Your job contains 1 sequence.
>psy5785
MSVAVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK
PDEKPTMQEYKTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYK
VDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKY
LGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLV
PDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWW
NGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5785
(340 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q3B8J8 - symbol:sdhb "Succinate dehydrogenase [... 539 2.9e-64 2
UNIPROTKB|B0BM36 - symbol:sdhb "Succinate dehydrogenase [... 533 2.9e-64 2
FB|FBgn0014028 - symbol:SdhB "Succinate dehydrogenase B" ... 564 9.9e-64 2
RGD|1308598 - symbol:Sdhb "succinate dehydrogenase comple... 536 3.3e-63 2
UNIPROTKB|Q007T0 - symbol:SDHB "Succinate dehydrogenase [... 541 6.9e-63 2
ZFIN|ZDB-GENE-030131-8005 - symbol:sdhb "succinate dehydr... 544 1.1e-62 2
UNIPROTKB|Q3T189 - symbol:SDHB "Succinate dehydrogenase [... 538 1.1e-62 2
UNIPROTKB|I3LDC1 - symbol:SDHB "Succinate dehydrogenase [... 536 2.3e-62 2
MGI|MGI:1914930 - symbol:Sdhb "succinate dehydrogenase co... 537 2.9e-62 2
UNIPROTKB|F1Q3W8 - symbol:SDHB "Uncharacterized protein" ... 539 4.8e-62 2
UNIPROTKB|F1NNF7 - symbol:SDHB "Succinate dehydrogenase [... 535 4.8e-62 2
UNIPROTKB|Q9YHT2 - symbol:SDHB "Succinate dehydrogenase [... 535 4.8e-62 2
UNIPROTKB|P21912 - symbol:SDHB "Succinate dehydrogenase [... 536 6.1e-62 2
SGD|S000003964 - symbol:SDH2 "Iron-sulfur protein subunit... 479 6.9e-57 2
FB|FBgn0030975 - symbol:CG7349 species:7227 "Drosophila m... 513 1.4e-56 2
POMBASE|SPAC140.01 - symbol:sdh2 "succinate dehydrogenase... 466 1.6e-55 2
CGD|CAL0000978 - symbol:SDH2 species:5476 "Candida albica... 463 1.6e-55 2
UNIPROTKB|Q59QN7 - symbol:SDH2 "Putative uncharacterized ... 463 1.6e-55 2
UNIPROTKB|A8WPF0 - symbol:sdhb-1 "Succinate dehydrogenase... 480 5.4e-55 2
WB|WBGene00006433 - symbol:sdhb-1 species:6239 "Caenorhab... 478 1.6e-53 2
UNIPROTKB|Q09545 - symbol:sdhb-1 "Succinate dehydrogenase... 478 1.6e-53 2
ASPGD|ASPL0000047708 - symbol:AN2332 species:162425 "Emer... 450 2.6e-53 2
TAIR|locus:2168818 - symbol:SDH2-2 "succinate dehydrogena... 437 3.3e-51 2
TIGR_CMR|ECH_0316 - symbol:ECH_0316 "succinate dehydrogen... 455 2.0e-49 2
TIGR_CMR|SPO_0361 - symbol:SPO_0361 "succinate dehydrogen... 454 2.3e-48 2
TAIR|locus:2086716 - symbol:SDH2-1 "succinate dehydrogena... 421 4.7e-48 2
GENEDB_PFALCIPARUM|PFL0630w - symbol:PFL0630w "iron-sulfu... 451 6.0e-48 2
UNIPROTKB|Q8I5S5 - symbol:PFL0630w "Iron-sulfur subunit o... 451 6.0e-48 2
TAIR|locus:504954878 - symbol:SDH2-3 "succinate dehydroge... 402 4.2e-47 2
TIGR_CMR|APH_0159 - symbol:APH_0159 "succinate dehydrogen... 442 8.6e-47 2
TIGR_CMR|APH_0162 - symbol:APH_0162 "succinate dehydrogen... 442 8.6e-47 2
DICTYBASE|DDB_G0270120 - symbol:sdhB "succinate dehydroge... 399 7.5e-42 2
TIGR_CMR|CBU_1400 - symbol:CBU_1400 "succinate dehydrogen... 377 2.8e-40 2
UNIPROTKB|P07014 - symbol:sdhB "succinate dehydrogenase i... 373 9.4e-40 2
UNIPROTKB|Q48K72 - symbol:sdhB "Succinate dehydrogenase, ... 375 1.5e-39 2
UNIPROTKB|Q4KFZ0 - symbol:sdhB "Succinate dehydrogenase, ... 382 3.2e-39 2
TIGR_CMR|NSE_0534 - symbol:NSE_0534 "succinate dehydrogen... 413 1.3e-38 1
TIGR_CMR|CPS_2218 - symbol:CPS_2218 "succinate dehydrogen... 362 3.5e-38 2
TIGR_CMR|SO_1929 - symbol:SO_1929 "succinate dehydrogenas... 352 3.5e-38 2
UNIPROTKB|Q9KQB2 - symbol:VC_2088 "Succinate dehydrogenas... 355 1.9e-37 2
TIGR_CMR|VC_2088 - symbol:VC_2088 "succinate dehydrogenas... 355 1.9e-37 2
UNIPROTKB|O53371 - symbol:sdhB "Succinate dehydrogenase a... 242 1.3e-23 2
UNIPROTKB|Q9KNS4 - symbol:VC_2657 "Fumarate reductase, ir... 162 5.8e-10 1
TIGR_CMR|VC_2657 - symbol:VC_2657 "fumarate reductase, ir... 162 5.8e-10 1
TIGR_CMR|CHY_1370 - symbol:CHY_1370 "fumarate reductase, ... 159 1.8e-09 1
UNIPROTKB|P0AC47 - symbol:frdB "fumarate reductase iron-s... 147 3.6e-08 1
TIGR_CMR|CHY_0064 - symbol:CHY_0064 "fumarate reductase, ... 150 4.3e-08 1
TIGR_CMR|SO_0399 - symbol:SO_0399 "fumarate reductase iro... 98 2.5e-05 2
TIGR_CMR|CJE_0489 - symbol:CJE_0489 "succinate dehydrogen... 114 0.00056 1
>UNIPROTKB|Q3B8J8 [details] [associations]
symbol:sdhb "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:8355 "Xenopus laevis"
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0022900 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039 GO:GO:0008177
KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 CTD:6390
HOVERGEN:HBG005483 HSSP:Q9YHT2 EMBL:BC043859 EMBL:BC106300
RefSeq:NP_001080247.1 UniGene:Xl.12560 ProteinModelPortal:Q3B8J8
SMR:Q3B8J8 PRIDE:Q3B8J8 GeneID:379939 KEGG:xla:379939
Xenbase:XB-GENE-970197 Uniprot:Q3B8J8
Length = 282
Score = 539 (194.8 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 96/126 (76%), Positives = 113/126 (89%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N KVSKIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ DK G QYLQS++
Sbjct: 118 RIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIE 177
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T +RL++L+
Sbjct: 178 DRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQ 237
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 238 DPFSLY 243
Score = 350 (128.3 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 59/73 (80%), Positives = 69/73 (94%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 171 QYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTE 230
Query: 203 DRLNQLKDPFSVY 215
+RL++L+DPFS+Y
Sbjct: 231 ERLSKLQDPFSLY 243
Score = 134 (52.2 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 78 SFQLSAAA-SSAVPAEKPA-KYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
+ Q+S A ++A PA + A + K FAIYRW+PDKP +KP MQ Y+VDLN
Sbjct: 20 ALQVSRGAQTAAAPASQAAARIKKFAIYRWDPDKPGDKPRMQTYEVDLN 68
Score = 116 (45.9 bits), Expect = 3.2e-45, Sum P(3) = 3.2e-45
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 29 SFQLSAAA-SSAVPAEKPA-KYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
+ Q+S A ++A PA + A + K FAIYRW+PDKP +KP MQ Y+ N
Sbjct: 20 ALQVSRGAQTAAAPASQAAARIKKFAIYRWDPDKPGDKPRMQTYEVDLN 68
Score = 37 (18.1 bits), Expect = 4.2e-47, Sum P(3) = 4.2e-47
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 242 LYRCHTIMNCTRTCP 256
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 242 LYRCHTIMNCTRTCP 256
>UNIPROTKB|B0BM36 [details] [associations]
symbol:sdhb "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0005743 "mitochondrial inner membrane"
evidence=ISS] [GO:0005749 "mitochondrial respiratory chain complex
II" evidence=ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0022900 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039 GO:GO:0008177
eggNOG:COG0479 HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 CTD:6390 GeneTree:ENSGT00390000013558
HOVERGEN:HBG005483 OrthoDB:EOG4T4CW4 EMBL:BC158270
RefSeq:NP_001120000.1 UniGene:Str.51669 ProteinModelPortal:B0BM36
SMR:B0BM36 STRING:B0BM36 Ensembl:ENSXETT00000029442
GeneID:100144957 KEGG:xtr:100144957 Xenbase:XB-GENE-970193
OMA:LIVDMEP Bgee:B0BM36 Uniprot:B0BM36
Length = 284
Score = 533 (192.7 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 95/126 (75%), Positives = 112/126 (88%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N KVSKIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 120 RIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKEQYLQSIE 179
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 180 DRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTEERLAKLQ 239
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 240 DPFSLY 245
Score = 348 (127.6 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 59/73 (80%), Positives = 68/73 (93%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 173 QYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTE 232
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 233 ERLAKLQDPFSLY 245
Score = 140 (54.3 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 77 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
R Q +AAA+ A AE A+ K FAIYRW+PDKP +KP MQ Y+VDLN
Sbjct: 25 RGAQTAAAAAPASQAE--ARIKKFAIYRWDPDKPGDKPRMQTYEVDLN 70
Score = 122 (48.0 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 26/48 (54%), Positives = 32/48 (66%)
Query: 28 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
R Q +AAA+ A AE A+ K FAIYRW+PDKP +KP MQ Y+ N
Sbjct: 25 RGAQTAAAAAPASQAE--ARIKKFAIYRWDPDKPGDKPRMQTYEVDLN 70
Score = 37 (18.1 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 244 LYRCHTIMNCTRTCP 258
Score = 37 (18.1 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 244 LYRCHTIMNCTRTCP 258
>FB|FBgn0014028 [details] [associations]
symbol:SdhB "Succinate dehydrogenase B" species:7227
"Drosophila melanogaster" [GO:0008177 "succinate dehydrogenase
(ubiquinone) activity" evidence=ISS;NAS] [GO:0005749 "mitochondrial
respiratory chain complex II" evidence=ISS;NAS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS;NAS] [GO:0009055 "electron
carrier activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur
cluster binding" evidence=IEA] [GO:0006121 "mitochondrial electron
transport, succinate to ubiquinone" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
UniPathway:UPA00223 InterPro:IPR017900 Prosite:PS00198
EMBL:AE013599 GO:GO:0005875 GO:GO:0009055 GO:GO:0046872
GO:GO:0006099 GO:GO:0051539 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0006121 GO:GO:0048039
GO:GO:0008177 eggNOG:COG0479 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP CTD:6390
GeneTree:ENSGT00390000013558 EMBL:L27705 EMBL:AY118923
RefSeq:NP_477101.1 UniGene:Dm.497 ProteinModelPortal:P21914
SMR:P21914 DIP:DIP-20115N IntAct:P21914 MINT:MINT-929605
STRING:P21914 PaxDb:P21914 EnsemblMetazoa:FBtr0086156 GeneID:35590
KEGG:dme:Dmel_CG3283 FlyBase:FBgn0014028 InParanoid:P21914
OrthoDB:EOG4XGXFW PhylomeDB:P21914 GenomeRNAi:35590 NextBio:794181
Bgee:P21914 GermOnline:CG3283 Uniprot:P21914
Length = 297
Score = 564 (203.6 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 103/129 (79%), Positives = 112/129 (86%)
Query: 216 SKIDANDKVS-KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE---NIGNAQYLQ 271
SKID N S K+YPLPHMYVV+DLVPDMNNFY QY++IQPWLQR E G AQYLQ
Sbjct: 122 SKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQ 181
Query: 272 SLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 331
S++DR KLDGLYECILCACCSTSCPSYWWN EKYLGPAVLMQAYRWIIDSRDE +A+RLN
Sbjct: 182 SVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLN 241
Query: 332 QLKDPFSVY 340
+LKDPFSVY
Sbjct: 242 KLKDPFSVY 250
Score = 382 (139.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 72/106 (67%), Positives = 80/106 (75%)
Query: 111 DEKPTMQEYKVDLNNQLNFSARSSHA-TAISNAQYLQSLDDRKKLDGLYECILCACCSTS 169
D P M + N + R + A AQYLQS++DR KLDGLYECILCACCSTS
Sbjct: 145 DLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECILCACCSTS 204
Query: 170 CPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
CPSYWWN EKYLGPAVLMQAYRWIIDSRDE +A+RLN+LKDPFSVY
Sbjct: 205 CPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVY 250
Score = 104 (41.7 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 91 AEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL 123
A++P + K F IYRWNPD EKP MQ Y+VDL
Sbjct: 41 AQEP-QIKKFEIYRWNPDNAGEKPYMQTYEVDL 72
Score = 94 (38.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 18 SAIG-LTAKN-IRSFQLSAAA--SSAVPAE-KPAKYKTFAIYRWNPDKPDEKPTMQEYK 71
S +G L A+N +R+ A A P E + + K F IYRWNPD EKP MQ Y+
Sbjct: 11 SRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQTYE 69
>RGD|1308598 [details] [associations]
symbol:Sdhb "succinate dehydrogenase complex, subunit B, iron
sulfur (Ip)" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;ISS;IDA] [GO:0005749 "mitochondrial
respiratory chain complex II" evidence=ISO;ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=IEA] [GO:0006105 "succinate
metabolic process" evidence=IMP] [GO:0008177 "succinate
dehydrogenase (ubiquinone) activity" evidence=IMP] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0022904 "respiratory
electron transport chain" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0048039 "ubiquinone binding"
evidence=ISS] [GO:0051537 "2 iron, 2 sulfur cluster binding"
evidence=ISS] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=ISS] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=ISS] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 RGD:1308598 GO:GO:0009055
GO:GO:0046872 GO:GO:0006099 GO:GO:0051539 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0022904 GO:GO:0005749 GO:GO:0048039
GO:GO:0008177 GO:GO:0006105 eggNOG:COG0479 HOGENOM:HOG000160590
KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP CTD:6390
GeneTree:ENSGT00390000013558 HOVERGEN:HBG005483 OrthoDB:EOG4T4CW4
EMBL:CH473968 EMBL:BC158620 EMBL:DQ403001 IPI:IPI00785564
PIR:B32394 RefSeq:NP_001094009.1 UniGene:Rn.3902
ProteinModelPortal:P21913 SMR:P21913 STRING:P21913
PhosphoSite:P21913 PRIDE:P21913 Ensembl:ENSRNOT00000010593
GeneID:298596 KEGG:rno:298596 UCSC:RGD:1308598 InParanoid:Q0QEZ3
SABIO-RK:P21913 NextBio:644032 Genevestigator:P21913
GermOnline:ENSRNOG00000007967 Uniprot:P21913
Length = 282
Score = 536 (193.7 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 95/126 (75%), Positives = 114/126 (90%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 118 RIDTDLGKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 177
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRDE T +RL +L+
Sbjct: 178 DREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTEERLAKLQ 237
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 238 DPFSLY 243
Score = 358 (131.1 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRDE T
Sbjct: 171 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDEFTE 230
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 231 ERLAKLQDPFSLY 243
Score = 127 (49.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 26/53 (49%), Positives = 30/53 (56%)
Query: 72 TAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
TA Q A + A + KTFAIYRW+PDK +KP MQ YKVDLN
Sbjct: 16 TALGRVGLQFQACREAQTAAAAAPRIKTFAIYRWDPDKAGDKPRMQTYKVDLN 68
Score = 120 (47.3 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 33/72 (45%), Positives = 41/72 (56%)
Query: 4 AVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDE 63
AV+G + LK FSA L ++ FQ A +A A P + KTFAIYRW+PDK +
Sbjct: 3 AVVG--VSLKRG-FSATALGRVGLQ-FQACREAQTAAAAA-P-RIKTFAIYRWDPDKAGD 56
Query: 64 KPTMQEYKTAKN 75
KP MQ YK N
Sbjct: 57 KPRMQTYKVDLN 68
Score = 37 (18.1 bits), Expect = 3.3e-47, Sum P(3) = 3.3e-47
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 242 LYRCHTIMNCTQTCP 256
Score = 37 (18.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 242 LYRCHTIMNCTQTCP 256
>UNIPROTKB|Q007T0 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9823 "Sus scrofa"
[GO:0048039 "ubiquinone binding" evidence=IDA] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=IDA]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IDA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA]
[GO:0005743 "mitochondrial inner membrane" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006099
"tricarboxylic acid cycle" evidence=IEA] [GO:0008177 "succinate
dehydrogenase (ubiquinone) activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0022900 "electron transport
chain" evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0046872
GO:GO:0006099 GO:GO:0051539 GO:GO:0022900 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 PDB:1ZOY PDB:1ZP0 PDB:3ABV
PDB:3AE1 PDB:3AE2 PDB:3AE3 PDB:3AE4 PDB:3AE5 PDB:3AE6 PDB:3AE7
PDB:3AE8 PDB:3AE9 PDB:3AEA PDB:3AEB PDB:3AEC PDB:3AED PDB:3AEE
PDB:3AEF PDB:3AEG PDB:3SFD PDB:3SFE PDBsum:1ZOY PDBsum:1ZP0
PDBsum:3ABV PDBsum:3AE1 PDBsum:3AE2 PDBsum:3AE3 PDBsum:3AE4
PDBsum:3AE5 PDBsum:3AE6 PDBsum:3AE7 PDBsum:3AE8 PDBsum:3AE9
PDBsum:3AEA PDBsum:3AEB PDBsum:3AEC PDBsum:3AED PDBsum:3AEE
PDBsum:3AEF PDBsum:3AEG PDBsum:3SFD PDBsum:3SFE GO:GO:0048039
GO:GO:0008177 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 CTD:6390
HOVERGEN:HBG005483 EMBL:DQ915498 EMBL:DQ403018
RefSeq:NP_001098423.1 UniGene:Ssc.55804 ProteinModelPortal:Q007T0
SMR:Q007T0 PRIDE:Q007T0 GeneID:414412 KEGG:ssc:414412
EvolutionaryTrace:Q007T0 Uniprot:Q007T0
Length = 280
Score = 541 (195.5 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 95/126 (75%), Positives = 115/126 (91%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N DKVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 116 RIDTNLDKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 176 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 235
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 236 DPFSLY 241
Score = 351 (128.6 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 59/73 (80%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 119 (46.9 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 81 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
L A + A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 23 LQACRGAQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNN 67
Score = 95 (38.5 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 32 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
L A + A + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 23 LQACRGAQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLN 66
>ZFIN|ZDB-GENE-030131-8005 [details] [associations]
symbol:sdhb "succinate dehydrogenase complex,
subunit B, iron sulfur (Ip)" species:7955 "Danio rerio" [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009055 "electron
carrier activity" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA;ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0008177 "succinate dehydrogenase (ubiquinone)
activity" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA;ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA;ISS] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0022900
"electron transport chain" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
UniPathway:UPA00223 InterPro:IPR017900 Prosite:PS00198
ZFIN:ZDB-GENE-030131-8005 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0022900 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039 GO:GO:0008177
eggNOG:COG0479 HOGENOM:HOG000160590 KO:K00235 OMA:WSADSRD
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 CTD:6390
GeneTree:ENSGT00390000013558 HOVERGEN:HBG005483 OrthoDB:EOG4T4CW4
EMBL:BC142799 IPI:IPI00511258 RefSeq:NP_001092210.1
UniGene:Dr.75182 ProteinModelPortal:A5PL98 SMR:A5PL98 STRING:A5PL98
PRIDE:A5PL98 Ensembl:ENSDART00000062264 GeneID:562149
KEGG:dre:562149 NextBio:20884271 Bgee:A5PL98 Uniprot:A5PL98
Length = 280
Score = 544 (196.6 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 97/127 (76%), Positives = 115/127 (90%)
Query: 216 SKIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSL 273
+KID N KV+KIYPLPHMYVVKDLVPDM+NFYAQYKSI+P+L++ D+ G QYLQS+
Sbjct: 114 NKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSV 173
Query: 274 DDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQL 333
+DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T DRL++L
Sbjct: 174 EDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKL 233
Query: 334 KDPFSVY 340
+DPFS+Y
Sbjct: 234 QDPFSLY 240
Score = 355 (130.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 60/73 (82%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 168 QYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTE 227
Query: 203 DRLNQLKDPFSVY 215
DRL++L+DPFS+Y
Sbjct: 228 DRLSKLQDPFSLY 240
Score = 114 (45.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 84 AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
A ++A PA +P + K F IYRW+PD +KP MQ Y++DLN
Sbjct: 26 AQTAAAPAAQP-RIKKFQIYRWDPDTVGDKPRMQTYEIDLN 65
Score = 96 (38.9 bits), Expect = 1.2e-43, Sum P(3) = 1.2e-43
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 35 AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
A ++A PA +P + K F IYRW+PD +KP MQ Y+ N
Sbjct: 26 AQTAAAPAAQP-RIKKFQIYRWDPDTVGDKPRMQTYEIDLN 65
Score = 37 (18.1 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 239 LYRCHTIMNCTRTCP 253
Score = 37 (18.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 239 LYRCHTIMNCTRTCP 253
>UNIPROTKB|Q3T189 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9913 "Bos taurus"
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS]
[GO:0048039 "ubiquinone binding" evidence=ISS] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=ISS]
[GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0008177
"succinate dehydrogenase (ubiquinone) activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0022900 "electron
transport chain" evidence=IEA] [GO:0009055 "electron carrier
activity" evidence=IEA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0046872
GO:GO:0006099 GO:GO:0051539 GO:GO:0022900 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039 GO:GO:0008177
eggNOG:COG0479 HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP EMBL:BC102067 IPI:IPI00693011
RefSeq:NP_001035573.1 UniGene:Bt.13128 ProteinModelPortal:Q3T189
SMR:Q3T189 IntAct:Q3T189 STRING:Q3T189 PRIDE:Q3T189
Ensembl:ENSBTAT00000010949 GeneID:286840 KEGG:bta:286840 CTD:6390
GeneTree:ENSGT00390000013558 HOVERGEN:HBG005483 InParanoid:Q3T189
OrthoDB:EOG4T4CW4 NextBio:20806491 ArrayExpress:Q3T189
Uniprot:Q3T189
Length = 280
Score = 538 (194.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 95/126 (75%), Positives = 114/126 (90%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 116 RIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQGGKEQYLQSIE 175
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 176 DREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 235
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 236 DPFSLY 241
Score = 355 (130.0 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
Identities = 60/73 (82%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 120 (47.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 80 QLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
+L A + A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 22 RLQACRGAQTAAAAAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNN 67
Score = 99 (39.9 bits), Expect = 5.7e-44, Sum P(3) = 5.7e-44
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 16 KFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
+F A L +++ + + A++A P + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 12 RFPAAALGGARLQACRGAQTAAAAAP-----RIKKFAIYRWDPDKTGDKPHMQTYEIDLN 66
Score = 37 (18.1 bits), Expect = 3.7e-46, Sum P(3) = 3.7e-46
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTQTCP 254
Score = 37 (18.1 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTQTCP 254
>UNIPROTKB|I3LDC1 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9823 "Sus scrofa"
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0051537 "2 iron, 2
sulfur cluster binding" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA] [GO:0006099 "tricarboxylic acid cycle" evidence=IEA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
GO:GO:0016491 GO:GO:0006099 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0005749 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP
GeneTree:ENSGT00390000013558 EMBL:FP565627
Ensembl:ENSSSCT00000027692 Uniprot:I3LDC1
Length = 280
Score = 536 (193.7 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 94/126 (74%), Positives = 115/126 (91%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N +KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 116 RIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 176 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 235
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 236 DPFSLY 241
Score = 351 (128.6 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
Identities = 59/73 (80%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 119 (46.9 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 81 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
L A + A + K FAIYRW+PDK +KP MQ Y++DLNN
Sbjct: 23 LQACRGAQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLNN 67
Score = 95 (38.5 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 32 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
L A + A + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 23 LQACRGAQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLN 66
>MGI|MGI:1914930 [details] [associations]
symbol:Sdhb "succinate dehydrogenase complex, subunit B,
iron sulfur (Ip)" species:10090 "Mus musculus" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005743 "mitochondrial inner
membrane" evidence=ISO;IDA] [GO:0005749 "mitochondrial respiratory
chain complex II" evidence=IDA] [GO:0006099 "tricarboxylic acid
cycle" evidence=IEA] [GO:0006105 "succinate metabolic process"
evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008177
"succinate dehydrogenase (ubiquinone) activity" evidence=ISO]
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0022900 "electron transport chain" evidence=IEA]
[GO:0022904 "respiratory electron transport chain" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051537 "2 iron, 2
sulfur cluster binding" evidence=IEA] [GO:0051538 "3 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 MGI:MGI:1914930 GO:GO:0009055
GO:GO:0046872 GO:GO:0006099 GO:GO:0051539 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0022904 GO:GO:0005749 GO:GO:0048039
GO:GO:0008177 GO:GO:0006105 eggNOG:COG0479 HOGENOM:HOG000160590
KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP CTD:6390
GeneTree:ENSGT00390000013558 HOVERGEN:HBG005483 OrthoDB:EOG4T4CW4
EMBL:AK003052 EMBL:AK003533 EMBL:AK009660 EMBL:AK153045
EMBL:AK169252 EMBL:BC013509 EMBL:BC051934 IPI:IPI00338536
PIR:PT0094 RefSeq:NP_075863.2 UniGene:Mm.246965
ProteinModelPortal:Q9CQA3 SMR:Q9CQA3 IntAct:Q9CQA3 STRING:Q9CQA3
PhosphoSite:Q9CQA3 REPRODUCTION-2DPAGE:Q9CQA3 PaxDb:Q9CQA3
PRIDE:Q9CQA3 Ensembl:ENSMUST00000010007 GeneID:67680 KEGG:mmu:67680
InParanoid:Q9CQA3 ChiTaRS:SDHB NextBio:325239 Bgee:Q9CQA3
Genevestigator:Q9CQA3 GermOnline:ENSMUSG00000009863 Uniprot:Q9CQA3
Length = 282
Score = 537 (194.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 95/126 (75%), Positives = 114/126 (90%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID + KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 118 RIDTDLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 177
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 178 DREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 237
Query: 335 DPFSVY 340
DPFSVY
Sbjct: 238 DPFSVY 243
Score = 358 (131.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 171 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 230
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFSVY
Sbjct: 231 ERLAKLQDPFSVY 243
Score = 117 (46.2 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 25/46 (54%), Positives = 30/46 (65%)
Query: 79 FQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
FQ A +A A P + K FAIYRW+PDK +KP MQ Y+VDLN
Sbjct: 25 FQACRGAQTAAAAA-P-RIKKFAIYRWDPDKTGDKPRMQTYEVDLN 68
Score = 99 (39.9 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 30 FQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
FQ A +A A P + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 25 FQACRGAQTAAAAA-P-RIKKFAIYRWDPDKTGDKPRMQTYEVDLN 68
>UNIPROTKB|F1Q3W8 [details] [associations]
symbol:SDHB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0006099
"tricarboxylic acid cycle" evidence=IEA] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0016491
GO:GO:0006099 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0005749 KO:K00235
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP CTD:6390
GeneTree:ENSGT00390000013558 EMBL:AAEX03001846 EMBL:AAEX03001845
RefSeq:NP_001239146.1 Ensembl:ENSCAFT00000025080 GeneID:478217
KEGG:cfa:478217 Uniprot:F1Q3W8
Length = 280
Score = 539 (194.8 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 95/126 (75%), Positives = 114/126 (90%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 116 RIDTNLSKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 176 DREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 235
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 236 DPFSLY 241
Score = 355 (130.0 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 60/73 (82%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 113 (44.8 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 81 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
L A + A + K FAIYRW+PDK +KP MQ Y++DLN
Sbjct: 23 LQACRGAQTAAATAPRIKKFAIYRWDPDKTGDKPHMQTYEIDLN 66
Score = 98 (39.6 bits), Expect = 7.2e-44, Sum P(3) = 7.2e-44
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 4 AVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDE 63
AV+G + LK +F A L +++ + + A++ P + K FAIYRW+PDK +
Sbjct: 3 AVVG--VSLKR-RFPAAALGGACLQACRGAQTAAATAP-----RIKKFAIYRWDPDKTGD 54
Query: 64 KPTMQEYKTAKN 75
KP MQ Y+ N
Sbjct: 55 KPHMQTYEIDLN 66
Score = 37 (18.1 bits), Expect = 2.0e-45, Sum P(3) = 2.0e-45
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTRTCP 254
Score = 37 (18.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTRTCP 254
>UNIPROTKB|F1NNF7 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9031 "Gallus gallus"
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0051537 "2 iron, 2
sulfur cluster binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0009055 GO:GO:0016491 GO:GO:0006099 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP GeneTree:ENSGT00390000013558
IPI:IPI00580009 EMBL:AADN02040962 RefSeq:XP_003642553.1
Ensembl:ENSGALT00000000694 GeneID:100859720 KEGG:gga:100859720
Uniprot:F1NNF7
Length = 290
Score = 535 (193.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 95/126 (75%), Positives = 113/126 (89%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 126 KIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIE 185
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL QL+
Sbjct: 186 DRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQ 245
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 246 DPFSLY 251
Score = 360 (131.8 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 179 QYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTE 238
Query: 203 DRLNQLKDPFSVY 215
+RL QL+DPFS+Y
Sbjct: 239 ERLAQLQDPFSLY 251
Score = 117 (46.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 77 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
R Q +AAA+S + K F+IYRW+PDKP +KP MQ Y+VDLN
Sbjct: 37 RGAQTAAAATSRI--------KKFSIYRWDPDKPGDKPRMQTYEVDLN 76
Score = 112 (44.5 bits), Expect = 7.5e-46, Sum P(3) = 7.5e-46
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 1 MSVAVIGETILLKM-SKFSAIGLT-AKNIRSFQ-LSAAASSAVPAEKPAKYKTFAIYRWN 57
M+ AV+G ++ + ++F GL + + + Q + A +A A ++ K F+IYRW+
Sbjct: 1 MAAAVVGVSLRRGVPARFLRAGLRPVRGLEAVQGICRGAQTAAAAT--SRIKKFSIYRWD 58
Query: 58 PDKPDEKPTMQEYKTAKN 75
PDKP +KP MQ Y+ N
Sbjct: 59 PDKPGDKPRMQTYEVDLN 76
Score = 37 (18.1 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 250 LYRCHTIMNCTRTCP 264
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 250 LYRCHTIMNCTRTCP 264
>UNIPROTKB|Q9YHT2 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9031 "Gallus gallus"
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0022900
"electron transport chain" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0008177 "succinate dehydrogenase
(ubiquinone) activity" evidence=IEA] [GO:0006099 "tricarboxylic
acid cycle" evidence=IEA;TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=ISS] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=ISS] [GO:0005743 "mitochondrial inner membrane"
evidence=ISS] [GO:0005749 "mitochondrial respiratory chain complex
II" evidence=ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS]
Reactome:REACT_115655 InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0044281 GO:GO:0009055
GO:GO:0046872 GO:GO:0006099 GO:GO:0051539 GO:GO:0022900
GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039
GO:GO:0008177 PDB:1YQ3 PDB:1YQ4 PDB:2FBW PDB:2H88 PDB:2H89 PDB:2WQY
PDBsum:1YQ3 PDBsum:1YQ4 PDBsum:2FBW PDBsum:2H88 PDBsum:2H89
PDBsum:2WQY eggNOG:COG0479 HOGENOM:HOG000160590 KO:K00235
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 CTD:6390 HOVERGEN:HBG005483
OrthoDB:EOG4T4CW4 EMBL:AF095937 IPI:IPI00580009
RefSeq:NP_001074344.1 ProteinModelPortal:Q9YHT2 SMR:Q9YHT2
STRING:Q9YHT2 PRIDE:Q9YHT2 GeneID:770063 KEGG:gga:770063
InParanoid:Q9YHT2 EvolutionaryTrace:Q9YHT2 NextBio:20920287
Uniprot:Q9YHT2
Length = 290
Score = 535 (193.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 95/126 (75%), Positives = 113/126 (89%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
KID + K +KIYPLPHMYVVKDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 126 KIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIE 185
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL QL+
Sbjct: 186 DRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQ 245
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 246 DPFSLY 251
Score = 360 (131.8 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS++DR+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 179 QYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTE 238
Query: 203 DRLNQLKDPFSVY 215
+RL QL+DPFS+Y
Sbjct: 239 ERLAQLQDPFSLY 251
Score = 117 (46.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 25/48 (52%), Positives = 32/48 (66%)
Query: 77 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
R Q +AAA+S + K F+IYRW+PDKP +KP MQ Y+VDLN
Sbjct: 37 RGAQTAAAATSRI--------KKFSIYRWDPDKPGDKPRMQTYEVDLN 76
Score = 107 (42.7 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 1 MSVAVIGETILLKM-SKFSAIGLT-AKNIRSFQ-LSAAASSAVPAEKPAKYKTFAIYRWN 57
M+ AV+G ++ + ++F GL + + + + A +A A ++ K F+IYRW+
Sbjct: 1 MAAAVVGVSLRRGVPARFLRAGLRPVRGLEAVHGICRGAQTAAAAT--SRIKKFSIYRWD 58
Query: 58 PDKPDEKPTMQEYKTAKN 75
PDKP +KP MQ Y+ N
Sbjct: 59 PDKPGDKPRMQTYEVDLN 76
Score = 37 (18.1 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 250 LYRCHTIMNCTRTCP 264
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 250 LYRCHTIMNCTRTCP 264
>UNIPROTKB|P21912 [details] [associations]
symbol:SDHB "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:9606 "Homo sapiens"
[GO:0009055 "electron carrier activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0008177 "succinate
dehydrogenase (ubiquinone) activity" evidence=IEA] [GO:0006105
"succinate metabolic process" evidence=IEA] [GO:0006099
"tricarboxylic acid cycle" evidence=IEA;TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=ISS] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=ISS] [GO:0005743 "mitochondrial inner membrane"
evidence=ISS;TAS] [GO:0005749 "mitochondrial respiratory chain
complex II" evidence=ISS] [GO:0051538 "3 iron, 4 sulfur cluster
binding" evidence=ISS] [GO:0048039 "ubiquinone binding"
evidence=ISS] [GO:0009060 "aerobic respiration" evidence=TAS]
[GO:0022904 "respiratory electron transport chain" evidence=TAS]
[GO:0044281 "small molecule metabolic process" evidence=TAS]
[GO:0005739 "mitochondrion" evidence=IDA] Reactome:REACT_111217
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
Prosite:PS00198 GO:GO:0044281 GO:GO:0009055 GO:GO:0046872
EMBL:CH471134 GO:GO:0006099 GO:GO:0051539 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 DrugBank:DB00139 EMBL:AL049569 GO:GO:0022904
GO:GO:0005749 MIM:606864 Orphanet:97286 Orphanet:29072
GO:GO:0048039 GO:GO:0008177 GO:GO:0006105 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
OMA:NCSRTCP CTD:6390 HOVERGEN:HBG005483 OrthoDB:EOG4T4CW4
EMBL:U17248 EMBL:U17886 EMBL:U17296 EMBL:U17880 EMBL:U17881
EMBL:U17882 EMBL:U17883 EMBL:U17884 EMBL:U17885 EMBL:AK312056
EMBL:BC007840 EMBL:D10245 EMBL:M32246 IPI:IPI00294911 PIR:I38895
RefSeq:NP_002991.2 UniGene:Hs.465924 ProteinModelPortal:P21912
SMR:P21912 IntAct:P21912 STRING:P21912 PhosphoSite:P21912
DMDM:20455488 UCD-2DPAGE:P21912 PaxDb:P21912 PeptideAtlas:P21912
PRIDE:P21912 DNASU:6390 Ensembl:ENST00000375499 GeneID:6390
KEGG:hsa:6390 UCSC:uc001bae.3 GeneCards:GC01M017345 HGNC:HGNC:10681
HPA:CAB009822 HPA:HPA002867 HPA:HPA002868 MIM:115310 MIM:171300
MIM:185470 MIM:612359 neXtProt:NX_P21912 Orphanet:201
PharmGKB:PA35606 InParanoid:P21912 PhylomeDB:P21912
BioCyc:MetaCyc:ENSG00000117118-MONOMER GenomeRNAi:6390
NextBio:24824 ArrayExpress:P21912 Bgee:P21912 CleanEx:HS_SDHB
Genevestigator:P21912 GermOnline:ENSG00000117118 Uniprot:P21912
Length = 280
Score = 536 (193.7 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 94/126 (74%), Positives = 115/126 (91%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+ID N +KVSKIYPLPHMYV+KDLVPD++NFYAQYKSI+P+L++ D+ G QYLQS++
Sbjct: 116 RIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIE 175
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T +RL +L+
Sbjct: 176 EREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQ 235
Query: 335 DPFSVY 340
DPFS+Y
Sbjct: 236 DPFSLY 241
Score = 351 (128.6 bits), Expect = 3.2e-45, Sum P(3) = 3.2e-45
Identities = 59/73 (80%), Positives = 70/73 (95%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
QYLQS+++R+KLDGLYECILCACCSTSCPSYWWNG+KYLGPAVLMQAYRW+IDSRD+ T
Sbjct: 169 QYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTE 228
Query: 203 DRLNQLKDPFSVY 215
+RL +L+DPFS+Y
Sbjct: 229 ERLAKLQDPFSLY 241
Score = 115 (45.5 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 81 LSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
L A+ + A + K FAIYRW+PDK +KP MQ Y+VDLN
Sbjct: 23 LQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLN 66
Score = 98 (39.6 bits), Expect = 1.9e-43, Sum P(3) = 1.9e-43
Identities = 21/54 (38%), Positives = 28/54 (51%)
Query: 22 LTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
L A + L A+ + A + K FAIYRW+PDK +KP MQ Y+ N
Sbjct: 13 LPATTLGGACLQASRGAQTAAATAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLN 66
Score = 37 (18.1 bits), Expect = 3.2e-45, Sum P(3) = 3.2e-45
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTRTCP 254
Score = 37 (18.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 240 LYRCHTIMNCTRTCP 254
>SGD|S000003964 [details] [associations]
symbol:SDH2 "Iron-sulfur protein subunit of succinate
dehydrogenase" species:4932 "Saccharomyces cerevisiae" [GO:0005749
"mitochondrial respiratory chain complex II" evidence=IDA]
[GO:0008177 "succinate dehydrogenase (ubiquinone) activity"
evidence=IEA;IGI;IMP;IDA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA;IMP] [GO:0045333 "cellular respiration"
evidence=IGI;IMP] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0022900 "electron transport chain" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051537 "2 iron,
2 sulfur cluster binding" evidence=IEA] [GO:0051538 "3 iron, 4
sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0006121
"mitochondrial electron transport, succinate to ubiquinone"
evidence=TAS] [GO:0031966 "mitochondrial membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IEA] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
UniPathway:UPA00223 SGD:S000003964 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
EMBL:BK006945 GO:GO:0051539 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0006121 GO:GO:0008177
PDB:1ORZ PDB:1PB4 PDBsum:1ORZ PDBsum:1PB4 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
OMA:NCSRTCP GeneTree:ENSGT00390000013558 OrthoDB:EOG4PRX0W
EMBL:J05487 EMBL:Z73146 EMBL:AY558189 PIR:A35435 RefSeq:NP_013059.1
ProteinModelPortal:P21801 SMR:P21801 DIP:DIP-5856N IntAct:P21801
MINT:MINT-695166 STRING:P21801 PaxDb:P21801 PeptideAtlas:P21801
EnsemblFungi:YLL041C GeneID:850685 KEGG:sce:YLL041C CYGD:YLL041c
NextBio:966692 Genevestigator:P21801 GermOnline:YLL041C
Uniprot:P21801
Length = 266
Score = 479 (173.7 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 87/125 (69%), Positives = 100/125 (80%)
Query: 217 KIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDD 275
KID N+ K KIYPLPHM++VKDLVPD+ NFY QYKSIQP+LQR + LQS++D
Sbjct: 110 KIDQNESKQLKIYPLPHMFIVKDLVPDLTNFYQQYKSIQPYLQRSSFPKDGTEVLQSIED 169
Query: 276 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
RKKLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRW+IDSRD+ T R L +
Sbjct: 170 RKKLDGLYECILCACCSTSCPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNN 229
Query: 336 PFSVY 340
S+Y
Sbjct: 230 SMSLY 234
Score = 315 (115.9 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 62/106 (58%), Positives = 73/106 (68%)
Query: 110 PDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTS 169
PD Q+YK + L S+ T + LQS++DRKKLDGLYECILCACCSTS
Sbjct: 135 PDLTNFYQQYK-SIQPYLQRSSFPKDGTEV-----LQSIEDRKKLDGLYECILCACCSTS 188
Query: 170 CPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
CPSYWWN E+YLGPAVLMQAYRW+IDSRD+ T R L + S+Y
Sbjct: 189 CPSYWWNQEQYLGPAVLMQAYRWLIDSRDQATKTRKAMLNNSMSLY 234
Score = 124 (48.7 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 83 AAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
A A++A P + KTF +YRWNPD+P KP +Q Y+VDLN+
Sbjct: 20 ATATTAAATHTP-RLKTFKVYRWNPDEPSAKPHLQSYQVDLND 61
Score = 105 (42.0 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 34 AAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
A A++A P + KTF +YRWNPD+P KP +Q Y+ N
Sbjct: 20 ATATTAAATHTP-RLKTFKVYRWNPDEPSAKPHLQSYQVDLN 60
Score = 37 (18.1 bits), Expect = 2.0e-40, Sum P(3) = 2.0e-40
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 233 LYRCHTIMNCTRTCP 247
Score = 37 (18.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 233 LYRCHTIMNCTRTCP 247
>FB|FBgn0030975 [details] [associations]
symbol:CG7349 species:7227 "Drosophila melanogaster"
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0009055 "electron carrier activity" evidence=IEA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0051537 "2
iron, 2 sulfur cluster binding" evidence=IEA] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0016491
GO:GO:0006099 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 eggNOG:COG0479 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 HSSP:P07014 EMBL:AY089563
ProteinModelPortal:Q8SXL9 SMR:Q8SXL9 STRING:Q8SXL9 PaxDb:Q8SXL9
PRIDE:Q8SXL9 FlyBase:FBgn0030975 InParanoid:Q8SXL9
OrthoDB:EOG41JWTV ArrayExpress:Q8SXL9 Bgee:Q8SXL9 Uniprot:Q8SXL9
Length = 437
Score = 513 (185.6 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 93/128 (72%), Positives = 104/128 (81%)
Query: 216 SKIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRD--KENIGNAQYLQS 272
S ID N+ K +IYPLPH+YVV+DLVPDM+ FY QY+SIQPWLQR K G AQYLQS
Sbjct: 260 SSIDQNESKCCRIYPLPHLYVVRDLVPDMSQFYDQYRSIQPWLQRKDLKREAGTAQYLQS 319
Query: 273 LDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQ 332
+DDR LDGLYECILCACC TSCPSYWWN KYLGPAVLMQAYRW+IDSRDE T RL+
Sbjct: 320 VDDRLVLDGLYECILCACCQTSCPSYWWNSNKYLGPAVLMQAYRWVIDSRDEATEQRLDF 379
Query: 333 LKDPFSVY 340
LKDP+ +Y
Sbjct: 380 LKDPWKLY 387
Score = 340 (124.7 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 63/105 (60%), Positives = 72/105 (68%)
Query: 111 DEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSC 170
D P M ++ + + R AQYLQS+DDR LDGLYECILCACC TSC
Sbjct: 283 DLVPDMSQFYDQYRSIQPWLQRKDLKREAGTAQYLQSVDDRLVLDGLYECILCACCQTSC 342
Query: 171 PSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 215
PSYWWN KYLGPAVLMQAYRW+IDSRDE T RL+ LKDP+ +Y
Sbjct: 343 PSYWWNSNKYLGPAVLMQAYRWVIDSRDEATEQRLDFLKDPWKLY 387
Score = 87 (35.7 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 85 ASSAVPAE-KPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL 123
A SA P + K + KTF IYRW KP ++P Q Y+VDL
Sbjct: 174 AKSAPPVKAKKQRLKTFEIYRW---KPGDQPQTQTYEVDL 210
Score = 73 (30.8 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 36 ASSAVPAE-KPAKYKTFAIYRWNPDKPDEKPTMQEYK 71
A SA P + K + KTF IYRW KP ++P Q Y+
Sbjct: 174 AKSAPPVKAKKQRLKTFEIYRW---KPGDQPQTQTYE 207
>POMBASE|SPAC140.01 [details] [associations]
symbol:sdh2 "succinate dehydrogenase (ubiquinone)
iron-sulfur protein subunit (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0006099 "tricarboxylic acid cycle" evidence=ISS]
[GO:0006105 "succinate metabolic process" evidence=ISS] [GO:0006121
"mitochondrial electron transport, succinate to ubiquinone"
evidence=ISS] [GO:0008177 "succinate dehydrogenase (ubiquinone)
activity" evidence=ISS] [GO:0009055 "electron carrier activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
PomBase:SPAC140.01 Prosite:PS00198 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0005749 GO:GO:0006121 GO:GO:0008177 GO:GO:0006105
eggNOG:COG0479 HOGENOM:HOG000160590 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 PIR:D32394 PIR:T37633 RefSeq:NP_593530.2
STRING:P21911 PRIDE:P21911 EnsemblFungi:SPAC140.01.1 GeneID:2542842
OrthoDB:EOG4PRX0W NextBio:20803883 Uniprot:P21911
Length = 275
Score = 466 (169.1 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 85/124 (68%), Positives = 101/124 (81%)
Query: 218 IDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIG-NAQYLQSLDDR 276
I ++K +KIYPLPH ++VKDLVPD+ FY QYKSI+PWLQ D NI + ++ QS DR
Sbjct: 122 IKKDNKPTKIYPLPHCFIVKDLVPDLTYFYKQYKSIEPWLQND--NIPKDKEFYQSRADR 179
Query: 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDP 336
KLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRWIIDSRD+ TA RL+ +++
Sbjct: 180 AKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATAKRLDVMQNS 239
Query: 337 FSVY 340
SVY
Sbjct: 240 MSVY 243
Score = 315 (115.9 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
Identities = 55/73 (75%), Positives = 63/73 (86%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++ QS DR KLDGLYECILCACCSTSCPSYWWN E+YLGPAVLMQAYRWIIDSRD+ TA
Sbjct: 171 EFYQSRADRAKLDGLYECILCACCSTSCPSYWWNSEEYLGPAVLMQAYRWIIDSRDQATA 230
Query: 203 DRLNQLKDPFSVY 215
RL+ +++ SVY
Sbjct: 231 KRLDVMQNSMSVY 243
Score = 124 (48.7 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 74 KNIRSFQLSA--AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDL 123
+N R A +A+SA P + KTF IYRWNP+KP+ KP +Q+Y VDL
Sbjct: 19 RNARMMATEANISATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKYTVDL 70
Score = 111 (44.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 25 KNIRSFQLSA--AASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
+N R A +A+SA P + KTF IYRWNP+KP+ KP +Q+Y
Sbjct: 19 RNARMMATEANISATSANPQSQGENLKTFEIYRWNPEKPEVKPKLQKY 66
>CGD|CAL0000978 [details] [associations]
symbol:SDH2 species:5476 "Candida albicans" [GO:0030445
"yeast-form cell wall" evidence=IDA] [GO:0000104 "succinate
dehydrogenase activity" evidence=NAS] [GO:0005749 "mitochondrial
respiratory chain complex II" evidence=IEA] [GO:0009986 "cell
surface" evidence=IDA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0008177 "succinate dehydrogenase (ubiquinone)
activity" evidence=IEA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 CGD:CAL0000978
Prosite:PS00198 GO:GO:0009986 GO:GO:0030445 GO:GO:0009055
GO:GO:0006099 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
EMBL:AACQ01000173 EMBL:AACQ01000172 RefSeq:XP_711983.1
RefSeq:XP_712003.1 ProteinModelPortal:Q59QN7 SMR:Q59QN7
STRING:Q59QN7 GeneID:3646378 GeneID:3646397 KEGG:cal:CaO19.637
KEGG:cal:CaO19.8251 Uniprot:Q59QN7
Length = 263
Score = 463 (168.0 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 81/125 (64%), Positives = 103/125 (82%)
Query: 217 KIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDD 275
+ID ++ K K+YPLPHM+VV+DLVPD+ +FY QYKSI+P+LQR+ + LQS++D
Sbjct: 107 RIDQDESKDLKVYPLPHMFVVRDLVPDLTHFYKQYKSIEPYLQRESNPADGRENLQSIED 166
Query: 276 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
R KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD+ TA+R L++
Sbjct: 167 RAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQATANRKAMLQN 226
Query: 336 PFSVY 340
S+Y
Sbjct: 227 SMSLY 231
Score = 310 (114.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS++DR KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD+ TA+R
Sbjct: 161 LQSIEDRAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQATANR 220
Query: 205 LNQLKDPFSVY 215
L++ S+Y
Sbjct: 221 KAMLQNSMSLY 231
Score = 127 (49.8 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 77 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
++ Q S + + AEK + K F IYRWNPD P+ +P MQ Y+VDLN
Sbjct: 10 KAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLN 57
Score = 109 (43.4 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 28 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
++ Q S + + AEK + K F IYRWNPD P+ +P MQ Y+ N
Sbjct: 10 KAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLN 57
Score = 37 (18.1 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 230 LYRCHTIMNCARTCP 244
Score = 37 (18.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 230 LYRCHTIMNCARTCP 244
>UNIPROTKB|Q59QN7 [details] [associations]
symbol:SDH2 "Putative uncharacterized protein SDH2"
species:237561 "Candida albicans SC5314" [GO:0000104 "succinate
dehydrogenase activity" evidence=NAS] [GO:0009986 "cell surface"
evidence=IDA] [GO:0030445 "yeast-form cell wall" evidence=IDA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 CGD:CAL0000978 Prosite:PS00198
GO:GO:0009986 GO:GO:0030445 GO:GO:0009055 GO:GO:0006099
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
EMBL:AACQ01000173 EMBL:AACQ01000172 RefSeq:XP_711983.1
RefSeq:XP_712003.1 ProteinModelPortal:Q59QN7 SMR:Q59QN7
STRING:Q59QN7 GeneID:3646378 GeneID:3646397 KEGG:cal:CaO19.637
KEGG:cal:CaO19.8251 Uniprot:Q59QN7
Length = 263
Score = 463 (168.0 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 81/125 (64%), Positives = 103/125 (82%)
Query: 217 KIDAND-KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDD 275
+ID ++ K K+YPLPHM+VV+DLVPD+ +FY QYKSI+P+LQR+ + LQS++D
Sbjct: 107 RIDQDESKDLKVYPLPHMFVVRDLVPDLTHFYKQYKSIEPYLQRESNPADGRENLQSIED 166
Query: 276 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
R KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD+ TA+R L++
Sbjct: 167 RAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQATANRKAMLQN 226
Query: 336 PFSVY 340
S+Y
Sbjct: 227 SMSLY 231
Score = 310 (114.2 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 53/71 (74%), Positives = 63/71 (88%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS++DR KLDGLYECILCACCSTSCPSYWWN ++YLGPAVLMQAYRW+IDSRD+ TA+R
Sbjct: 161 LQSIEDRAKLDGLYECILCACCSTSCPSYWWNQQQYLGPAVLMQAYRWLIDSRDQATANR 220
Query: 205 LNQLKDPFSVY 215
L++ S+Y
Sbjct: 221 KAMLQNSMSLY 231
Score = 127 (49.8 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 77 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
++ Q S + + AEK + K F IYRWNPD P+ +P MQ Y+VDLN
Sbjct: 10 KAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLN 57
Score = 109 (43.4 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 28 RSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKTAKN 75
++ Q S + + AEK + K F IYRWNPD P+ +P MQ Y+ N
Sbjct: 10 KAVQFSVRSLATAAAEKAPRLKKFQIYRWNPDTPEVQPKMQTYEVDLN 57
Score = 37 (18.1 bits), Expect = 3.3e-42, Sum P(3) = 3.3e-42
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 282 LYECILCACCSTSCP 296
LY C C+ +CP
Sbjct: 230 LYRCHTIMNCARTCP 244
Score = 37 (18.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 157 LYECILCACCSTSCP 171
LY C C+ +CP
Sbjct: 230 LYRCHTIMNCARTCP 244
>UNIPROTKB|A8WPF0 [details] [associations]
symbol:sdhb-1 "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:6238 "Caenorhabditis
briggsae" [GO:0005743 "mitochondrial inner membrane" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=ISS]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0022900 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0048039 GO:GO:0008177
eggNOG:COG0479 HOGENOM:HOG000160590 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 EMBL:HE600951 STRING:A8WPF0
EnsemblMetazoa:CBG00872 WormBase:CBG00872 Uniprot:A8WPF0
Length = 282
Score = 480 (174.0 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 86/126 (68%), Positives = 103/126 (81%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLD 274
KIDA+ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+Q+ +G Q QS+
Sbjct: 114 KIDADTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVA 173
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ +RL+++
Sbjct: 174 ERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYAQERLHRMH 233
Query: 335 DPFSVY 340
D FS +
Sbjct: 234 DSFSAF 239
Score = 307 (113.1 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 58/114 (50%), Positives = 77/114 (67%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD
Sbjct: 163 LGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRD 222
Query: 199 EKTADRLNQLKDPFSVYSKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKS 252
+ +RL+++ D FS + K +K P H+ K + ++ + +KS
Sbjct: 223 DYAQERLHRMHDSFSAF-KCHTIMNCTKTCP-KHLNPAK-AIGEIKSLLTGFKS 273
Score = 105 (42.0 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 82 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
++ A++A P + + KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 22 ASGAAAAQPKKTGNRIKTFEIYRFNPEAPGAKPTIQKFDVDLD 64
Score = 91 (37.1 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 33 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
++ A++A P + + KTF IYR+NP+ P KPT+Q++
Sbjct: 22 ASGAAAAQPKKTGNRIKTFEIYRFNPEAPGAKPTIQKF 59
>WB|WBGene00006433 [details] [associations]
symbol:sdhb-1 species:6239 "Caenorhabditis elegans"
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051537 "2 iron, 2
sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0009055 "electron carrier
activity" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0009055 GO:GO:0046872
GO:GO:0010171 GO:GO:0000003 GO:GO:0006099 GO:GO:0051539
GO:GO:0022900 GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0005749 GO:GO:0048039 GO:GO:0008177 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
OMA:NCSRTCP GeneTree:ENSGT00390000013558 EMBL:AB008569 EMBL:Z47809
PIR:T22083 PIR:T37260 RefSeq:NP_495992.1 ProteinModelPortal:Q09545
SMR:Q09545 STRING:Q09545 PaxDb:Q09545 EnsemblMetazoa:F42A8.2.1
EnsemblMetazoa:F42A8.2.2 GeneID:174482 KEGG:cel:CELE_F42A8.2
CTD:174482 WormBase:F42A8.2 InParanoid:Q09545 NextBio:884224
ArrayExpress:Q09545 Uniprot:Q09545
Length = 298
Score = 478 (173.3 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 85/126 (67%), Positives = 103/126 (81%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLD 274
KID++ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+Q+ +G Q QS+
Sbjct: 130 KIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVA 189
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ +RL+++
Sbjct: 190 ERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMH 249
Query: 335 DPFSVY 340
D FS +
Sbjct: 250 DSFSAF 255
Score = 306 (112.8 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD
Sbjct: 179 LGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRD 238
Query: 199 EKTADRLNQLKDPFSVY 215
+ +RL+++ D FS +
Sbjct: 239 DYATERLHRMHDSFSAF 255
Score = 93 (37.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
+ KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKFDVDLD 80
Score = 79 (32.9 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEY 70
+ KTF IYR+NP+ P KPT+Q++
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKF 75
>UNIPROTKB|Q09545 [details] [associations]
symbol:sdhb-1 "Succinate dehydrogenase [ubiquinone]
iron-sulfur subunit, mitochondrial" species:6239 "Caenorhabditis
elegans" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=ISS] [GO:0051538 "3 iron, 4 sulfur cluster binding"
evidence=ISS] [GO:0048039 "ubiquinone binding" evidence=ISS]
[GO:0005749 "mitochondrial respiratory chain complex II"
evidence=ISS] [GO:0005743 "mitochondrial inner membrane"
evidence=ISS] [GO:0051537 "2 iron, 2 sulfur cluster binding"
evidence=ISS] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0009055 GO:GO:0046872
GO:GO:0010171 GO:GO:0000003 GO:GO:0006099 GO:GO:0051539
GO:GO:0022900 GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0005749 GO:GO:0048039 GO:GO:0008177 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
OMA:NCSRTCP GeneTree:ENSGT00390000013558 EMBL:AB008569 EMBL:Z47809
PIR:T22083 PIR:T37260 RefSeq:NP_495992.1 ProteinModelPortal:Q09545
SMR:Q09545 STRING:Q09545 PaxDb:Q09545 EnsemblMetazoa:F42A8.2.1
EnsemblMetazoa:F42A8.2.2 GeneID:174482 KEGG:cel:CELE_F42A8.2
CTD:174482 WormBase:F42A8.2 InParanoid:Q09545 NextBio:884224
ArrayExpress:Q09545 Uniprot:Q09545
Length = 298
Score = 478 (173.3 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 85/126 (67%), Positives = 103/126 (81%)
Query: 217 KIDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLD 274
KID++ K +KIYPLPHM+VVKDLVPDMN FYAQY SIQPW+Q+ +G Q QS+
Sbjct: 130 KIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEKQMHQSVA 189
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
+R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD+ +RL+++
Sbjct: 190 ERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMH 249
Query: 335 DPFSVY 340
D FS +
Sbjct: 250 DSFSAF 255
Score = 306 (112.8 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 139 ISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRD 198
+ Q QS+ +R +LDGLYECILCACCSTSCPSYWWN +KYLGPAVLMQAYRW+IDSRD
Sbjct: 179 LGEKQMHQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRD 238
Query: 199 EKTADRLNQLKDPFSVY 215
+ +RL+++ D FS +
Sbjct: 239 DYATERLHRMHDSFSAF 255
Score = 93 (37.8 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 96 KYKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
+ KTF IYR+NP+ P KPT+Q++ VDL+
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKFDVDLD 80
Score = 79 (32.9 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 47 KYKTFAIYRWNPDKPDEKPTMQEY 70
+ KTF IYR+NP+ P KPT+Q++
Sbjct: 52 RIKTFEIYRFNPEAPGAKPTVQKF 75
>ASPGD|ASPL0000047708 [details] [associations]
symbol:AN2332 species:162425 "Emericella nidulans"
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA;RCA]
[GO:0000104 "succinate dehydrogenase activity" evidence=RCA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0009055
"electron carrier activity" evidence=IEA] [GO:0005749
"mitochondrial respiratory chain complex II" evidence=IEA]
[GO:0008177 "succinate dehydrogenase (ubiquinone) activity"
evidence=IEA] [GO:0035690 "cellular response to drug" evidence=IEA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0009055 EMBL:BN001307 GO:GO:0016491 GO:GO:0006099
EMBL:AACD01000038 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
eggNOG:COG0479 HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP OrthoDB:EOG4PRX0W RefSeq:XP_659936.1
ProteinModelPortal:Q5BAU8 SMR:Q5BAU8 STRING:Q5BAU8
EnsemblFungi:CADANIAT00009027 GeneID:2875591 KEGG:ani:AN2332.2
Uniprot:Q5BAU8
Length = 273
Score = 450 (163.5 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 78/118 (66%), Positives = 95/118 (80%)
Query: 223 KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGL 282
K S+IYPLPH YVVKDLVPD+ Y QYKSI+P+LQRD + + QS +DRKKLDGL
Sbjct: 124 KESRIYPLPHTYVVKDLVPDLTQIYKQYKSIKPYLQRDTKTEDGLENRQSPEDRKKLDGL 183
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
YECILC CCSTSCPSYWWN E+YLGPA+L+Q+YRW+ DSRD+KTA+R + + + SVY
Sbjct: 184 YECILCFCCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDQKTAERKHAIDNSMSVY 241
Score = 302 (111.4 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 50/70 (71%), Positives = 61/70 (87%)
Query: 146 QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205
QS +DRKKLDGLYECILC CCSTSCPSYWWN E+YLGPA+L+Q+YRW+ DSRD+KTA+R
Sbjct: 172 QSPEDRKKLDGLYECILCFCCSTSCPSYWWNSEEYLGPAILLQSYRWLADSRDQKTAERK 231
Query: 206 NQLKDPFSVY 215
+ + + SVY
Sbjct: 232 HAIDNSMSVY 241
Score = 119 (46.9 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 21/34 (61%), Positives = 27/34 (79%)
Query: 91 AEKPA-KYKTFAIYRWNPDKPDEKPTMQEYKVDL 123
A++PA + K F +YRWNPDKP EKP MQ Y++DL
Sbjct: 33 AQEPAPQMKKFQVYRWNPDKPSEKPKMQTYELDL 66
Score = 108 (43.1 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 42 AEKPA-KYKTFAIYRWNPDKPDEKPTMQEYK 71
A++PA + K F +YRWNPDKP EKP MQ Y+
Sbjct: 33 AQEPAPQMKKFQVYRWNPDKPSEKPKMQTYE 63
Score = 45 (20.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 103 YRWNPDKPDEKPTMQEYKVD 122
YRW D D+K +++ +D
Sbjct: 216 YRWLADSRDQKTAERKHAID 235
Score = 38 (18.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCP 296
WL D + A+ ++D+ + Y C C+ +CP
Sbjct: 218 WLA-DSRDQKTAERKHAIDNSMSV---YRCHTILNCTRTCP 254
>TAIR|locus:2168818 [details] [associations]
symbol:SDH2-2 "succinate dehydrogenase 2-2" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA;ISS] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0006121 "mitochondrial electron transport,
succinate to ubiquinone" evidence=ISS] [GO:0045281 "succinate
dehydrogenase complex" evidence=ISS] [GO:0005749 "mitochondrial
respiratory chain complex II" evidence=IDA] [GO:0008270 "zinc ion
binding" evidence=IDA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009055 GO:GO:0046872 GO:GO:0008270
GO:GO:0006099 GO:GO:0051539 GO:GO:0051538 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 EMBL:AB009052 GO:GO:0005749 GO:GO:0000104
GO:GO:0006121 GO:GO:0008177 eggNOG:COG0479 HOGENOM:HOG000160590
KO:K00235 ProtClustDB:PLN00129 SUPFAM:SSF46548 TIGRFAMs:TIGR00384
EMBL:AJ278911 EMBL:AY074299 EMBL:AY123036 EMBL:AY087504
IPI:IPI00523799 RefSeq:NP_198881.1 UniGene:At.20145
UniGene:At.67187 UniGene:At.7421 ProteinModelPortal:Q8LB02
SMR:Q8LB02 IntAct:Q8LB02 STRING:Q8LB02 PaxDb:Q8LB02 PRIDE:Q8LB02
EnsemblPlants:AT5G40650.1 GeneID:834065 KEGG:ath:AT5G40650
GeneFarm:2169 TAIR:At5g40650 InParanoid:Q8LB02 OMA:NCSRTCP
PhylomeDB:Q8LB02 Genevestigator:Q8LB02 GermOnline:AT5G40650
Uniprot:Q8LB02
Length = 280
Score = 437 (158.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 78/126 (61%), Positives = 95/126 (75%)
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR-DKENIGNAQYLQSLD 274
+KI++ K + I PLPHM+V+KDLV DM NFY QYKSI+PWL+R + ++ + LQS
Sbjct: 123 TKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKK 182
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL +
Sbjct: 183 DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAID 242
Query: 335 DPFSVY 340
D F +Y
Sbjct: 243 DEFKLY 248
Score = 290 (107.1 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
Identities = 50/84 (59%), Positives = 60/84 (71%)
Query: 132 RSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYR 191
+ + ++ + LQS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A R
Sbjct: 165 KRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR 224
Query: 192 WIIDSRDEKTADRLNQLKDPFSVY 215
WI DSRDE T +RL + D F +Y
Sbjct: 225 WISDSRDEYTKERLEAIDDEFKLY 248
Score = 112 (44.5 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 82 SAAASSAVPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
S A S A A KTF IYRWNPD P KP +Q+YK+DL +
Sbjct: 33 SEAQSKASTGGGGASLKTFQIYRWNPDNPG-KPELQDYKIDLKD 75
Score = 106 (42.4 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 27/71 (38%), Positives = 34/71 (47%)
Query: 1 MSVAVIGETILLKMSKFSAIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPDK 60
M+ +IG + K S+ S + S A S A A KTF IYRWNPD
Sbjct: 1 MAFGLIGRVVGTKSSRLSTAARLIPARWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDN 60
Query: 61 PDEKPTMQEYK 71
P KP +Q+YK
Sbjct: 61 PG-KPELQDYK 70
Score = 51 (23.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 256 WLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCP 296
W+ ++ + L+++DD KL Y C C+ +CP
Sbjct: 225 WISDSRDEY-TKERLEAIDDEFKL---YRCHTILNCARACP 261
Score = 47 (21.6 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCP 171
L+++DD KL Y C C+ +CP
Sbjct: 238 LEAIDDEFKL---YRCHTILNCARACP 261
>TIGR_CMR|ECH_0316 [details] [associations]
symbol:ECH_0316 "succinate dehydrogenase and fumarate
reductase iron-sulfur protein" species:205920 "Ehrlichia
chaffeensis str. Arkansas" [GO:0000104 "succinate dehydrogenase
activity" evidence=ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=ISS] [GO:0009060 "aerobic respiration" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0016491 GO:GO:0006099
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 eggNOG:COG0479 HOGENOM:HOG000160590
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240 ProtClustDB:PRK05950
RefSeq:YP_507137.1 ProteinModelPortal:Q2GHE6 SMR:Q2GHE6
STRING:Q2GHE6 GeneID:3927401 KEGG:ech:ECH_0316 PATRIC:20576135
OMA:MVQFSLP BioCyc:ECHA205920:GJNR-316-MONOMER Uniprot:Q2GHE6
Length = 258
Score = 455 (165.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 75/114 (65%), Positives = 96/114 (84%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 286
IYPLPHM+V+KDLVPD++NFY QY+S+ PW+Q ++ N N + LQ+++DR KLDG+Y+CI
Sbjct: 114 IYPLPHMHVIKDLVPDLSNFYKQYESVTPWIQAEEPN-HNKERLQTIEDRSKLDGIYDCI 172
Query: 287 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
LCACCSTSCPSYWWN +KYLGPA L+QAYRW+IDSRDE + RL+ L D F +Y
Sbjct: 173 LCACCSTSCPSYWWNSDKYLGPAALLQAYRWLIDSRDEASDSRLDVLDDAFKLY 226
Score = 311 (114.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 51/75 (68%), Positives = 63/75 (84%)
Query: 141 NAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEK 200
N + LQ+++DR KLDG+Y+CILCACCSTSCPSYWWN +KYLGPA L+QAYRW+IDSRDE
Sbjct: 152 NKERLQTIEDRSKLDGIYDCILCACCSTSCPSYWWNSDKYLGPAALLQAYRWLIDSRDEA 211
Query: 201 TADRLNQLKDPFSVY 215
+ RL+ L D F +Y
Sbjct: 212 SDSRLDVLDDAFKLY 226
Score = 77 (32.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 91 AEKPAK-YKTFAIYRWNPDKPDEKPTMQEYKVDLN 124
A K AK K F IYRW+PD DE P + + +DL+
Sbjct: 21 ARKGAKNVKCFKIYRWSPDD-DENPRIDTFFIDLD 54
Score = 66 (28.3 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 42 AEKPAK-YKTFAIYRWNPDKPDEKPTMQEY 70
A K AK K F IYRW+PD DE P + +
Sbjct: 21 ARKGAKNVKCFKIYRWSPDD-DENPRIDTF 49
>TIGR_CMR|SPO_0361 [details] [associations]
symbol:SPO_0361 "succinate dehydrogenase, iron-sulfur
protein" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006099 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 HOGENOM:HOG000160590
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240 ProtClustDB:PRK05950
OMA:LIVDMEP RefSeq:YP_165624.1 ProteinModelPortal:Q5LXE7 SMR:Q5LXE7
GeneID:3196472 KEGG:sil:SPO0361 PATRIC:23373981 Uniprot:Q5LXE7
Length = 259
Score = 454 (164.9 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 77/115 (66%), Positives = 96/115 (83%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KIYPLPHM VVKDL+PD+ +FYAQ+ SI PWL+ K N ++ QS++DR+KLDGLYEC
Sbjct: 112 KIYPLPHMPVVKDLIPDLTHFYAQHASIMPWLET-KTNRPAKEWKQSIEDRRKLDGLYEC 170
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
++CA CSTSCPSYWWNG++YLGPA L+ AYRWIIDSRDE T +RL+ L+DPF +Y
Sbjct: 171 VMCASCSTSCPSYWWNGDRYLGPAALLHAYRWIIDSRDEATGERLDNLEDPFKLY 225
Score = 321 (118.1 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 51/73 (69%), Positives = 65/73 (89%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++ QS++DR+KLDGLYEC++CA CSTSCPSYWWNG++YLGPA L+ AYRWIIDSRDE T
Sbjct: 153 EWKQSIEDRRKLDGLYECVMCASCSTSCPSYWWNGDRYLGPAALLHAYRWIIDSRDEATG 212
Query: 203 DRLNQLKDPFSVY 215
+RL+ L+DPF +Y
Sbjct: 213 ERLDNLEDPFKLY 225
Score = 68 (29.0 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 92 EKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
E + F IYRWNPD + P + Y VD+++
Sbjct: 22 EGATNLRKFQIYRWNPDD-GQNPRVDTYFVDMDD 54
Score = 57 (25.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 43 EKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
E + F IYRWNPD + P + Y
Sbjct: 22 EGATNLRKFQIYRWNPDD-GQNPRVDTY 48
>TAIR|locus:2086716 [details] [associations]
symbol:SDH2-1 "succinate dehydrogenase 2-1" species:3702
"Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA;ISS] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0006121 "mitochondrial electron transport,
succinate to ubiquinone" evidence=ISS] [GO:0045281 "succinate
dehydrogenase complex" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IDA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0005739 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005743 GO:GO:0009055 GO:GO:0046872
GO:GO:0008270 GO:GO:0006099 GO:GO:0051539 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 GO:GO:0006121 GO:GO:0008177
EMBL:AJ278910 EMBL:AB024028 EMBL:AY035013 EMBL:AY063053
EMBL:AY924777 EMBL:AY086901 IPI:IPI00517821 RefSeq:NP_001118718.1
RefSeq:NP_189374.1 UniGene:At.17610 UniGene:At.22540
UniGene:At.32384 UniGene:At.71559 ProteinModelPortal:Q8LBZ7
SMR:Q8LBZ7 IntAct:Q8LBZ7 STRING:Q8LBZ7 PaxDb:Q8LBZ7 PRIDE:Q8LBZ7
EnsemblPlants:AT3G27380.1 EnsemblPlants:AT3G27380.2 GeneID:822359
KEGG:ath:AT3G27380 GeneFarm:2168 TAIR:At3g27380 eggNOG:COG0479
HOGENOM:HOG000160590 InParanoid:Q9LTZ2 KO:K00235 OMA:WSADSRD
PhylomeDB:Q8LBZ7 ProtClustDB:PLN00129 Genevestigator:Q8LBZ7
GermOnline:AT3G27380 GO:GO:0045281 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 Uniprot:Q8LBZ7
Length = 279
Score = 421 (153.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 77/126 (61%), Positives = 91/126 (72%)
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKE-NIGNAQYLQSLD 274
+KI + I PLPHM+V+KDLV DM NFY QYKSI+PWL+R ++ + LQS
Sbjct: 124 TKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKK 183
Query: 275 DRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLK 334
DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T +RL +
Sbjct: 184 DRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAID 243
Query: 335 DPFSVY 340
D F +Y
Sbjct: 244 DEFKLY 249
Score = 287 (106.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 50/73 (68%), Positives = 56/73 (76%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
+ LQS DR KLDG+YECILCACCSTSCPSYWWN E YLGPA L+ A RWI DSRDE T
Sbjct: 177 EILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTK 236
Query: 203 DRLNQLKDPFSVY 215
+RL + D F +Y
Sbjct: 237 ERLEAIDDEFKLY 249
Score = 98 (39.6 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 98 KTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
KTF IYRWNPD P KP +Q Y++DL +
Sbjct: 50 KTFQIYRWNPDNPG-KPELQNYQIDLKD 76
Score = 96 (38.9 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 1 MSVAVIGETILLKMSKFS-AIGLTAKNIRSFQLSAAASSAVPAEKPAKYKTFAIYRWNPD 59
M+ +IG + K SK + A L S A ++ + + KTF IYRWNPD
Sbjct: 1 MASGLIGRLVGTKPSKLATAARLIPARWTSTGAEAETKASSGGGRGSNLKTFQIYRWNPD 60
Query: 60 KPDEKPTMQEYK 71
P KP +Q Y+
Sbjct: 61 NPG-KPELQNYQ 71
>GENEDB_PFALCIPARUM|PFL0630w [details] [associations]
symbol:PFL0630w "iron-sulfur subunit of
succinate dehydrogenase" species:5833 "Plasmodium falciparum"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0005739 GO:GO:0009055
GO:GO:0006099 EMBL:AE014188 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0008177 HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP ProtClustDB:CLSZ2431440
RefSeq:XP_001350535.1 HSSP:P07014 ProteinModelPortal:Q8I5S5
SMR:Q8I5S5 IntAct:Q8I5S5 MINT:MINT-1741055
EnsemblProtists:PFL0630w:mRNA GeneID:811179 KEGG:pfa:PFL0630w
EuPathDB:PlasmoDB:PF3D7_1212800 Uniprot:Q8I5S5
Length = 321
Score = 451 (163.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 79/134 (58%), Positives = 105/134 (78%)
Query: 209 KDPFSVYSKIDANDK-VSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRD-KENIGN 266
K+ + ++++ + K +++I PLP++YV+KDLVPD+ NFY QYKSI PWL+R K+ G
Sbjct: 135 KNGLACLTEVNRDKKEITEIQPLPNLYVMKDLVPDLTNFYNQYKSIDPWLKRKTKKEKGQ 194
Query: 267 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
++ QS++DRKKLDGLYECI+CA CSTSCPSYWWN E YLGPA LMQAYRWI+DSRDE T
Sbjct: 195 KEFYQSIEDRKKLDGLYECIMCASCSTSCPSYWWNPEYYLGPATLMQAYRWIVDSRDEYT 254
Query: 327 ADRLNQLKDPFSVY 340
+RL ++ D +Y
Sbjct: 255 KERLMEVNDTMKLY 268
Score = 304 (112.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++ QS++DRKKLDGLYECI+CA CSTSCPSYWWN E YLGPA LMQAYRWI+DSRDE T
Sbjct: 196 EFYQSIEDRKKLDGLYECIMCASCSTSCPSYWWNPEYYLGPATLMQAYRWIVDSRDEYTK 255
Query: 203 DRLNQLKDPFSVY 215
+RL ++ D +Y
Sbjct: 256 ERLMEVNDTMKLY 268
Score = 67 (28.6 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 89 VPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
V E + K F+I+R+NP ++P M+ ++VD++N
Sbjct: 59 VNGEVVKRKKKFSIFRYNPTNK-KRPQMETFEVDIDN 94
Score = 48 (22.0 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 40 VPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYK 71
V E + K F+I+R+NP ++P M+ ++
Sbjct: 59 VNGEVVKRKKKFSIFRYNPTNK-KRPQMETFE 89
>UNIPROTKB|Q8I5S5 [details] [associations]
symbol:PFL0630w "Iron-sulfur subunit of succinate
dehydrogenase" species:36329 "Plasmodium falciparum 3D7"
[GO:0005739 "mitochondrion" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0005739 GO:GO:0009055
GO:GO:0006099 EMBL:AE014188 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0008177 HOGENOM:HOG000160590 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP ProtClustDB:CLSZ2431440
RefSeq:XP_001350535.1 HSSP:P07014 ProteinModelPortal:Q8I5S5
SMR:Q8I5S5 IntAct:Q8I5S5 MINT:MINT-1741055
EnsemblProtists:PFL0630w:mRNA GeneID:811179 KEGG:pfa:PFL0630w
EuPathDB:PlasmoDB:PF3D7_1212800 Uniprot:Q8I5S5
Length = 321
Score = 451 (163.8 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 79/134 (58%), Positives = 105/134 (78%)
Query: 209 KDPFSVYSKIDANDK-VSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRD-KENIGN 266
K+ + ++++ + K +++I PLP++YV+KDLVPD+ NFY QYKSI PWL+R K+ G
Sbjct: 135 KNGLACLTEVNRDKKEITEIQPLPNLYVMKDLVPDLTNFYNQYKSIDPWLKRKTKKEKGQ 194
Query: 267 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
++ QS++DRKKLDGLYECI+CA CSTSCPSYWWN E YLGPA LMQAYRWI+DSRDE T
Sbjct: 195 KEFYQSIEDRKKLDGLYECIMCASCSTSCPSYWWNPEYYLGPATLMQAYRWIVDSRDEYT 254
Query: 327 ADRLNQLKDPFSVY 340
+RL ++ D +Y
Sbjct: 255 KERLMEVNDTMKLY 268
Score = 304 (112.1 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++ QS++DRKKLDGLYECI+CA CSTSCPSYWWN E YLGPA LMQAYRWI+DSRDE T
Sbjct: 196 EFYQSIEDRKKLDGLYECIMCASCSTSCPSYWWNPEYYLGPATLMQAYRWIVDSRDEYTK 255
Query: 203 DRLNQLKDPFSVY 215
+RL ++ D +Y
Sbjct: 256 ERLMEVNDTMKLY 268
Score = 67 (28.6 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 89 VPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
V E + K F+I+R+NP ++P M+ ++VD++N
Sbjct: 59 VNGEVVKRKKKFSIFRYNPTNK-KRPQMETFEVDIDN 94
Score = 48 (22.0 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 40 VPAEKPAKYKTFAIYRWNPDKPDEKPTMQEYK 71
V E + K F+I+R+NP ++P M+ ++
Sbjct: 59 VNGEVVKRKKKFSIFRYNPTNK-KRPQMETFE 89
>TAIR|locus:504954878 [details] [associations]
symbol:SDH2-3 "succinate dehydrogenase 2-3"
species:3702 "Arabidopsis thaliana" [GO:0005739 "mitochondrion"
evidence=ISM;IDA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA;ISS] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0006121 "mitochondrial electron transport,
succinate to ubiquinone" evidence=ISS] [GO:0045281 "succinate
dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
UniPathway:UPA00223 InterPro:IPR017900 Prosite:PS00198
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005743
GO:GO:0009055 GO:GO:0046872 GO:GO:0006099 GO:GO:0051539
GO:GO:0051538 EMBL:AB013395 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
GO:GO:0000104 GO:GO:0006121 GO:GO:0008177 eggNOG:COG0479
HOGENOM:HOG000160590 KO:K00235 ProtClustDB:PLN00129 GO:GO:0045281
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 EMBL:AJ278912 IPI:IPI00528859
RefSeq:NP_680465.2 UniGene:At.45474 ProteinModelPortal:Q9FJP9
SMR:Q9FJP9 STRING:Q9FJP9 PaxDb:Q9FJP9 EnsemblPlants:AT5G65165.1
GeneID:836640 KEGG:ath:AT5G65165 GeneFarm:2172 TAIR:At5g65165
InParanoid:Q9FJP9 OMA:CRTLTKD PhylomeDB:Q9FJP9
Genevestigator:Q9FJP9 Uniprot:Q9FJP9
Length = 309
Score = 402 (146.6 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 73/119 (61%), Positives = 89/119 (74%)
Query: 218 IDAN-DKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDR 276
I+ N K + I PLPHMYV+KDLV D+ NFY QYKS++PWL+ K ++ QS DR
Sbjct: 144 INPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDR 203
Query: 277 KKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
KKLDGLYECILCACC+TSCPSYWWN E++ GPA L+QAYRWI DSRDE +RL + +
Sbjct: 204 KKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITE 262
Score = 269 (99.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 46/68 (67%), Positives = 55/68 (80%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++ QS DRKKLDGLYECILCACC+TSCPSYWWN E++ GPA L+QAYRWI DSRDE
Sbjct: 195 EHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYRE 254
Query: 203 DRLNQLKD 210
+RL + +
Sbjct: 255 ERLQAITE 262
Score = 108 (43.1 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 65 PTMQEYKTAKNIRSFQLSAAASSAVPAEKPAKYKT----FAIYRWNPDKPDEKPTMQEYK 120
P + +K A+++ L S + EK ++K F IYRWNPDKP+ KP +Q +
Sbjct: 33 PILNGHKAAQDLSKDTLK---SQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFF 89
Query: 121 VDLNN 125
VDL++
Sbjct: 90 VDLSS 94
Score = 88 (36.0 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 49 KTFAIYRWNPDKPDEKPTMQEY 70
K F IYRWNPDKP+ KP +Q +
Sbjct: 67 KEFKIYRWNPDKPNSKPFLQSF 88
>TIGR_CMR|APH_0159 [details] [associations]
symbol:APH_0159 "succinate dehydrogenase, iron-sulfur
protein" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0006099
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240
ProtClustDB:PRK05950 OMA:MVQFSLP RefSeq:YP_504783.1
RefSeq:YP_504786.1 ProteinModelPortal:Q2GLG8 SMR:Q2GLG8
STRING:Q2GLG8 GeneID:3930311 GeneID:3930807 KEGG:aph:APH_0159
KEGG:aph:APH_0162 PATRIC:20948886
BioCyc:APHA212042:GHPM-194-MONOMER
BioCyc:APHA212042:GHPM-197-MONOMER Uniprot:Q2GLG8
Length = 262
Score = 442 (160.7 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 74/115 (64%), Positives = 92/115 (80%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KI+PLPHM V+KDLVPD++NFY QYKSI PWL+ D ++LQS++DR KLD +Y+C
Sbjct: 113 KIFPLPHMDVIKDLVPDLSNFYKQYKSISPWLKSDGARSDREEHLQSIEDRSKLDKVYDC 172
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWN +KYLGPA L+Q YRW++DSRD T +RL L+D F +Y
Sbjct: 173 ILCACCSTSCPSYWWNPDKYLGPAALLQVYRWLVDSRDTATEERLAFLEDAFKLY 227
Score = 296 (109.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++LQS++DR KLD +Y+CILCACCSTSCPSYWWN +KYLGPA L+Q YRW++DSRD T
Sbjct: 155 EHLQSIEDRSKLDKVYDCILCACCSTSCPSYWWNPDKYLGPAALLQVYRWLVDSRDTATE 214
Query: 203 DRLNQLKDPFSVY 215
+RL L+D F +Y
Sbjct: 215 ERLAFLEDAFKLY 227
Score = 65 (27.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLN 124
F IYRW+PD E P + Y +DL+
Sbjct: 31 FKIYRWSPDD-GENPRIDTYYIDLD 54
Score = 53 (23.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
F IYRW+PD E P + Y
Sbjct: 31 FKIYRWSPDD-GENPRIDTY 49
>TIGR_CMR|APH_0162 [details] [associations]
symbol:APH_0162 "succinate dehydrogenase, iron-sulfur
protein" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379
InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055 GO:GO:0006099
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240
ProtClustDB:PRK05950 OMA:MVQFSLP RefSeq:YP_504783.1
RefSeq:YP_504786.1 ProteinModelPortal:Q2GLG8 SMR:Q2GLG8
STRING:Q2GLG8 GeneID:3930311 GeneID:3930807 KEGG:aph:APH_0159
KEGG:aph:APH_0162 PATRIC:20948886
BioCyc:APHA212042:GHPM-194-MONOMER
BioCyc:APHA212042:GHPM-197-MONOMER Uniprot:Q2GLG8
Length = 262
Score = 442 (160.7 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 74/115 (64%), Positives = 92/115 (80%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
KI+PLPHM V+KDLVPD++NFY QYKSI PWL+ D ++LQS++DR KLD +Y+C
Sbjct: 113 KIFPLPHMDVIKDLVPDLSNFYKQYKSISPWLKSDGARSDREEHLQSIEDRSKLDKVYDC 172
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPSYWWN +KYLGPA L+Q YRW++DSRD T +RL L+D F +Y
Sbjct: 173 ILCACCSTSCPSYWWNPDKYLGPAALLQVYRWLVDSRDTATEERLAFLEDAFKLY 227
Score = 296 (109.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 48/73 (65%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++LQS++DR KLD +Y+CILCACCSTSCPSYWWN +KYLGPA L+Q YRW++DSRD T
Sbjct: 155 EHLQSIEDRSKLDKVYDCILCACCSTSCPSYWWNPDKYLGPAALLQVYRWLVDSRDTATE 214
Query: 203 DRLNQLKDPFSVY 215
+RL L+D F +Y
Sbjct: 215 ERLAFLEDAFKLY 227
Score = 65 (27.9 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDLN 124
F IYRW+PD E P + Y +DL+
Sbjct: 31 FKIYRWSPDD-GENPRIDTYYIDLD 54
Score = 53 (23.7 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
F IYRW+PD E P + Y
Sbjct: 31 FKIYRWSPDD-GENPRIDTY 49
>DICTYBASE|DDB_G0270120 [details] [associations]
symbol:sdhB "succinate dehydrogenase (ubiquinone)"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0051537 "2 iron, 2
sulfur cluster binding" evidence=IEA;ISS] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA;ISS] [GO:0008177 "succinate dehydrogenase (ubiquinone)
activity" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA;ISS] [GO:0051538 "3 iron, 4 sulfur cluster
binding" evidence=IEA;ISS] [GO:0048039 "ubiquinone binding"
evidence=ISS] [GO:0009060 "aerobic respiration" evidence=ISS]
[GO:0006121 "mitochondrial electron transport, succinate to
ubiquinone" evidence=ISS] [GO:0005749 "mitochondrial respiratory
chain complex II" evidence=ISS] [GO:0005743 "mitochondrial inner
membrane" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IEA;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0022900 "electron transport chain" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183
PROSITE:PS00197 PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 dictyBase:DDB_G0270120 Prosite:PS00198
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0009055
GO:GO:0046872 GO:GO:0006099 GO:GO:0051539 GO:GO:0051538
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0005749 GO:GO:0006121 GO:GO:0048039
GO:GO:0008177 eggNOG:COG0479 KO:K00235 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP RefSeq:XP_646559.1 HSSP:Q9YHT2
ProteinModelPortal:Q55CC2 SMR:Q55CC2 STRING:Q55CC2 PRIDE:Q55CC2
EnsemblProtists:DDB0231383 GeneID:8617527 KEGG:ddi:DDB_G0270120
ProtClustDB:CLSZ2431440 Uniprot:Q55CC2
Length = 287
Score = 399 (145.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 77/127 (60%), Positives = 95/127 (74%)
Query: 220 ANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQR--DKENIGNAQYLQSLDDRK 277
+ D V K+YPLPHM+VV+DL+PD+++FY Q+KSI+PWL+ D + LQS ++R
Sbjct: 130 SGDTV-KVYPLPHMHVVRDLIPDLSHFYTQHKSIKPWLEPAVDVPRYNGKEILQSKENRH 188
Query: 278 KLDGLYECILCACCSTSCPSYWWN--GEK-YLGPAVLMQAYRWIIDSRDEKTADRLNQL- 333
KLDGLYECILCACCSTSCPSYWW+ G+ YLGPAVL+QAYRWI DSRD DRL L
Sbjct: 189 KLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDRLAILS 248
Query: 334 KDPFSVY 340
+D VY
Sbjct: 249 EDQMKVY 255
Score = 264 (98.0 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 52/77 (67%), Positives = 59/77 (76%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWN--GEK-YLGPAVLMQAYRWIIDSRDE 199
+ LQS ++R KLDGLYECILCACCSTSCPSYWW+ G+ YLGPAVL+QAYRWI DSRD
Sbjct: 179 EILQSKENRHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDS 238
Query: 200 KTADRLNQL-KDPFSVY 215
DRL L +D VY
Sbjct: 239 IQKDRLAILSEDQMKVY 255
Score = 61 (26.5 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 91 AEKPAKYKTFAIYRWNPDKPDEKPTMQEYKVDLNN 125
AEK + F +YR+N ++ KP +Q Y ++L +
Sbjct: 42 AEKKDHFVNFQVYRYN-EETTAKPYIQTYNINLKD 75
Score = 52 (23.4 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 42 AEKPAKYKTFAIYRWNPDKPDEKPTMQEY 70
AEK + F +YR+N ++ KP +Q Y
Sbjct: 42 AEKKDHFVNFQVYRYN-EETTAKPYIQTY 69
>TIGR_CMR|CBU_1400 [details] [associations]
symbol:CBU_1400 "succinate dehydrogenase, iron-sulfur
protein" species:227377 "Coxiella burnetii RSA 493" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183
PROSITE:PS51379 UniPathway:UPA00223 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0046872 GO:GO:0006099
GO:GO:0051539 GO:GO:0022900 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0000104 EMBL:L33409
eggNOG:COG0479 HOGENOM:HOG000160590 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP EMBL:X77919 PIR:S42873
RefSeq:NP_820385.1 ProteinModelPortal:P51053 SMR:P51053
PRIDE:P51053 GeneID:1209306 KEGG:cbu:CBU_1400 PATRIC:17931557
KO:K00240 ProtClustDB:PRK05950 BioCyc:CBUR227377:GJ7S-1388-MONOMER
Uniprot:P51053
Length = 235
Score = 377 (137.8 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 67/122 (54%), Positives = 92/122 (75%)
Query: 219 DANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKK 278
D D+V + PLP +++DL+ DM FYAQYK ++P+L D+E + LQS ++R K
Sbjct: 79 DLPDRVV-VRPLPGFPIIRDLIVDMEQFYAQYKKVKPYLLNDQE-APQKERLQSPEERAK 136
Query: 279 LDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFS 338
LDGLYECILCACCS+SCPSYWWN +K++GPA L+ +YR+I DSRD K +RL+ +KDP+S
Sbjct: 137 LDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIADSRDSKEKERLDAMKDPYS 196
Query: 339 VY 340
V+
Sbjct: 197 VF 198
Score = 281 (104.0 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 47/71 (66%), Positives = 61/71 (85%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS ++R KLDGLYECILCACCS+SCPSYWWN +K++GPA L+ +YR+I DSRD K +R
Sbjct: 128 LQSPEERAKLDGLYECILCACCSSSCPSYWWNPDKFIGPAGLLWSYRFIADSRDSKEKER 187
Query: 205 LNQLKDPFSVY 215
L+ +KDP+SV+
Sbjct: 188 LDAMKDPYSVF 198
Score = 68 (29.0 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 12/26 (46%), Positives = 22/26 (84%)
Query: 99 TFAIYRWNPDKPDEKPTMQEYKVDLN 124
TF+I R+NP+ D+KP MQ++++D++
Sbjct: 2 TFSIMRFNPET-DKKPYMQDFELDVS 26
Score = 59 (25.8 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 50 TFAIYRWNPDKPDEKPTMQEYK 71
TF+I R+NP+ D+KP MQ+++
Sbjct: 2 TFSIMRFNPET-DKKPYMQDFE 22
>UNIPROTKB|P07014 [details] [associations]
symbol:sdhB "succinate dehydrogenase iron-sulfur protein"
species:83333 "Escherichia coli K-12" [GO:0022900 "electron
transport chain" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA;IMP]
[GO:0051538 "3 iron, 4 sulfur cluster binding" evidence=IEA;IDA]
[GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA;IMP]
[GO:0051536 "iron-sulfur cluster binding" evidence=IDA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0009055 "electron carrier activity"
evidence=IEA;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000104 "succinate dehydrogenase activity" evidence=IEA]
[GO:0006099 "tricarboxylic acid cycle" evidence=IEA] [GO:0009060
"aerobic respiration" evidence=IEP] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 UniPathway:UPA00223
InterPro:IPR017900 Prosite:PS00198 GO:GO:0005886 GO:GO:0009055
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006099 GO:GO:0051539
GO:GO:0022900 GO:GO:0051538 GO:GO:0051537 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 GO:GO:0009060
Gene3D:1.10.1060.10 GO:GO:0000104 EMBL:J01619 EMBL:X01070 PDB:1NEK
PDB:1NEN PDB:2ACZ PDB:2AD0 PDB:2WDQ PDB:2WDR PDB:2WDV PDB:2WP9
PDB:2WS3 PDB:2WU2 PDB:2WU5 PDBsum:1NEK PDBsum:1NEN PDBsum:2ACZ
PDBsum:2AD0 PDBsum:2WDQ PDBsum:2WDR PDBsum:2WDV PDBsum:2WP9
PDBsum:2WS3 PDBsum:2WU2 PDBsum:2WU5 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP
KO:K00240 ProtClustDB:PRK05950 EMBL:X00661 PIR:A28837
RefSeq:NP_415252.1 RefSeq:YP_489004.1 ProteinModelPortal:P07014
SMR:P07014 DIP:DIP-10836N IntAct:P07014 PRIDE:P07014
EnsemblBacteria:EBESCT00000004560 EnsemblBacteria:EBESCT00000004561
EnsemblBacteria:EBESCT00000017526 GeneID:12932956 GeneID:945300
KEGG:ecj:Y75_p0704 KEGG:eco:b0724 PATRIC:32116643 EchoBASE:EB0925
EcoGene:EG10932 BioCyc:EcoCyc:SDH-FE-S
BioCyc:ECOL316407:JW0714-MONOMER BioCyc:MetaCyc:SDH-FE-S
EvolutionaryTrace:P07014 Genevestigator:P07014 Uniprot:P07014
Length = 238
Score = 373 (136.4 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 73/143 (51%), Positives = 101/143 (70%)
Query: 202 ADRLNQL-KDPFSVYSKIDANDKVSK---IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL 257
+D LN K+ + + I A ++ K I PLP + V++DLV DM FYAQY+ I+P+L
Sbjct: 62 SDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYL 121
Query: 258 QRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRW 317
+ +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR+
Sbjct: 122 LNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRF 181
Query: 318 IIDSRDEKTADRLNQLKDPFSVY 340
+IDSRD +T RL+ L D FSV+
Sbjct: 182 LIDSRDTETDSRLDGLSDAFSVF 204
Score = 276 (102.2 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 47/73 (64%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T
Sbjct: 132 EHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETD 191
Query: 203 DRLNQLKDPFSVY 215
RL+ L D FSV+
Sbjct: 192 SRLDGLSDAFSVF 204
Score = 67 (28.6 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVD 122
F+IYR+NPD D+ P MQ+Y ++
Sbjct: 5 FSIYRYNPDV-DDAPRMQDYTLE 26
Score = 65 (27.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
F+IYR+NPD D+ P MQ+Y
Sbjct: 5 FSIYRYNPDV-DDAPRMQDY 23
>UNIPROTKB|Q48K72 [details] [associations]
symbol:sdhB "Succinate dehydrogenase, iron-sulfur protein"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0009055 GO:GO:0006099 GO:GO:0051536 Gene3D:3.10.20.30
InterPro:IPR012675 SUPFAM:SSF54292 Gene3D:1.10.1060.10
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0000104
eggNOG:COG0479 HOGENOM:HOG000160590 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 KO:K00240 ProtClustDB:PRK05950
RefSeq:YP_274203.1 ProteinModelPortal:Q48K72 SMR:Q48K72
STRING:Q48K72 GeneID:3555647 KEGG:psp:PSPPH_1979 PATRIC:19973160
OMA:DAAPFMQ Uniprot:Q48K72
Length = 234
Score = 375 (137.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 69/125 (55%), Positives = 95/125 (76%)
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDD 275
S + A +K+ + PLP + V++DLV DM+ FY QY+ ++P+LQ D + LQ+ ++
Sbjct: 78 SAVVAKNKLI-VRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQNDTPAPA-IERLQTPEE 135
Query: 276 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
R+KLDGLYECILCACCSTSCPS+WWN +K+LGPA L+QAYR++ DSRD +T +RL L D
Sbjct: 136 REKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTRTNERLASLDD 195
Query: 336 PFSVY 340
PFSV+
Sbjct: 196 PFSVF 200
Score = 291 (107.5 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
Identities = 49/71 (69%), Positives = 62/71 (87%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQ+ ++R+KLDGLYECILCACCSTSCPS+WWN +K+LGPA L+QAYR++ DSRD +T +R
Sbjct: 130 LQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTRTNER 189
Query: 205 LNQLKDPFSVY 215
L L DPFSV+
Sbjct: 190 LASLDDPFSVF 200
Score = 63 (27.2 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 101 AIYRWNPDKPDEKPTMQEYKVD 122
++YR+NP++ D P MQE++VD
Sbjct: 5 SVYRYNPEQ-DAAPFMQEFQVD 25
Score = 53 (23.7 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 52 AIYRWNPDKPDEKPTMQEYK 71
++YR+NP++ D P MQE++
Sbjct: 5 SVYRYNPEQ-DAAPFMQEFQ 23
>UNIPROTKB|Q4KFZ0 [details] [associations]
symbol:sdhB "Succinate dehydrogenase, iron-sulfur protein"
species:220664 "Pseudomonas protegens Pf-5" [GO:0005886 "plasma
membrane" evidence=ISS] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 PROSITE:PS51379 InterPro:IPR017900
Prosite:PS00198 GO:GO:0005886 GO:GO:0009055 GO:GO:0006099
GO:GO:0051536 EMBL:CP000076 GenomeReviews:CP000076_GR
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240
ProtClustDB:PRK05950 OMA:DAAPFMQ RefSeq:YP_258843.1
ProteinModelPortal:Q4KFZ0 SMR:Q4KFZ0 STRING:Q4KFZ0 GeneID:3478177
KEGG:pfl:PFL_1717 PATRIC:19872663
BioCyc:PFLU220664:GIX8-1725-MONOMER Uniprot:Q4KFZ0
Length = 234
Score = 382 (139.5 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 72/134 (53%), Positives = 99/134 (73%)
Query: 209 KDPFSVYSKIDANDKVSKIY--PLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGN 266
K+ + + + A K +K+ PLP + V++DLV DM+ FY QY+ ++P+LQ D
Sbjct: 68 KNGLACITPLSAVVKKNKLVVRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQNDTPAPA- 126
Query: 267 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 326
+ LQS ++R+KLDGLYECILCACCSTSCPS+WWN +K+LGPA L+QAYR++ DSRD KT
Sbjct: 127 IERLQSPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKT 186
Query: 327 ADRLNQLKDPFSVY 340
++RL L DPFSV+
Sbjct: 187 SERLASLDDPFSVF 200
Score = 300 (110.7 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 51/71 (71%), Positives = 63/71 (88%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS ++R+KLDGLYECILCACCSTSCPS+WWN +K+LGPA L+QAYR++ DSRD KT++R
Sbjct: 130 LQSPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTSER 189
Query: 205 LNQLKDPFSVY 215
L L DPFSV+
Sbjct: 190 LASLDDPFSVF 200
Score = 53 (23.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 102 IYRWNPDKPDEKPTMQEYKVD 122
+YR+NPD D P Q ++VD
Sbjct: 6 VYRYNPDT-DSAPKTQVFQVD 25
Score = 43 (20.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 53 IYRWNPDKPDEKPTMQEYK 71
+YR+NPD D P Q ++
Sbjct: 6 VYRYNPDT-DSAPKTQVFQ 23
>TIGR_CMR|NSE_0534 [details] [associations]
symbol:NSE_0534 "succinate dehydrogenase and fumarate
reductase iron-sulfur protein" species:222891 "Neorickettsia
sennetsu str. Miyayama" [GO:0000104 "succinate dehydrogenase
activity" evidence=ISS] [GO:0006099 "tricarboxylic acid cycle"
evidence=ISS] [GO:0009060 "aerobic respiration" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS00197 PROSITE:PS51085 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 GO:GO:0016491 GO:GO:0006099
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0479 HOGENOM:HOG000160590 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 KO:K00240 ProtClustDB:PRK05950
RefSeq:YP_506417.1 ProteinModelPortal:Q2GDM9 SMR:Q2GDM9
STRING:Q2GDM9 GeneID:3932205 KEGG:nse:NSE_0534 PATRIC:22681115
OMA:PSHAIER BioCyc:NSEN222891:GHFU-553-MONOMER Uniprot:Q2GDM9
Length = 254
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 70/115 (60%), Positives = 91/115 (79%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
+IYPLPHM V+KDLV D+ F+ Y+SI+PWL +K N G ++LQ ++R+KL GL++C
Sbjct: 109 RIYPLPHMRVLKDLVTDLTVFFQHYRSIKPWLHSEKSNNGK-EHLQMPEEREKLAGLHDC 167
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
ILCACCSTSCPS+WWNG+KYLGPA L+QAYRW++DSRD K +RL L D F +Y
Sbjct: 168 ILCACCSTSCPSFWWNGDKYLGPAALLQAYRWLVDSRDSKKKERLEFLADSFRLY 222
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 49/82 (59%), Positives = 65/82 (79%)
Query: 135 HATAISNA-QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 193
H+ +N ++LQ ++R+KL GL++CILCACCSTSCPS+WWNG+KYLGPA L+QAYRW+
Sbjct: 141 HSEKSNNGKEHLQMPEEREKLAGLHDCILCACCSTSCPSFWWNGDKYLGPAALLQAYRWL 200
Query: 194 IDSRDEKTADRLNQLKDPFSVY 215
+DSRD K +RL L D F +Y
Sbjct: 201 VDSRDSKKKERLEFLADSFRLY 222
>TIGR_CMR|CPS_2218 [details] [associations]
symbol:CPS_2218 "succinate dehydrogenase, iron-sulfur
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
GO:GO:0006099 GO:GO:0051536 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP
KO:K00240 ProtClustDB:PRK05950 RefSeq:YP_268943.1
ProteinModelPortal:Q482S4 SMR:Q482S4 STRING:Q482S4 GeneID:3518711
KEGG:cps:CPS_2218 PATRIC:21467547
BioCyc:CPSY167879:GI48-2288-MONOMER Uniprot:Q482S4
Length = 235
Score = 362 (132.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 66/125 (52%), Positives = 95/125 (76%)
Query: 216 SKIDANDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDD 275
S++ A DK+ + PLP + VV+DL+ DM FY QY+ I+P+L D + + +Q++++
Sbjct: 80 SELKA-DKII-LRPLPGLPVVRDLIIDMTQFYQQYEKIKPYLINDAQPAAR-ENIQTIEE 136
Query: 276 RKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKD 335
R KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD T +RL+ L+D
Sbjct: 137 RDKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLHAYRFLIDSRDTATEERLDGLQD 196
Query: 336 PFSVY 340
+SV+
Sbjct: 197 AYSVF 201
Score = 277 (102.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 45/71 (63%), Positives = 62/71 (87%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
+Q++++R KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD T +R
Sbjct: 131 IQTIEERDKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLHAYRFLIDSRDTATEER 190
Query: 205 LNQLKDPFSVY 215
L+ L+D +SV+
Sbjct: 191 LDGLQDAYSVF 201
Score = 63 (27.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDL 123
F+IYR+NPD D P M++Y++++
Sbjct: 5 FSIYRYNPDV-DNAPYMKDYELEV 27
Score = 59 (25.8 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 51 FAIYRWNPDKPDEKPTMQEYK 71
F+IYR+NPD D P M++Y+
Sbjct: 5 FSIYRYNPDV-DNAPYMKDYE 24
>TIGR_CMR|SO_1929 [details] [associations]
symbol:SO_1929 "succinate dehydrogenase, iron-sulfur
protein" species:211586 "Shewanella oneidensis MR-1" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0009055 GO:GO:0006099 GO:GO:0051536 EMBL:AE014299
GenomeReviews:AE014299_GR Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0008177
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 OMA:NCSRTCP
KO:K00240 ProtClustDB:PRK05950 HSSP:P07014 RefSeq:NP_717536.1
ProteinModelPortal:Q8EFP1 SMR:Q8EFP1 GeneID:1169691
KEGG:son:SO_1929 PATRIC:23523491 Uniprot:Q8EFP1
Length = 235
Score = 352 (129.0 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 63/118 (53%), Positives = 88/118 (74%)
Query: 223 KVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGL 282
K +I PLP M VV+DLV D+ FY QY+ I+P+L D + ++LQS + R LDGL
Sbjct: 85 KKLEIRPLPGMPVVRDLVVDLTQFYKQYEKIKPFLINDDKQPAR-EHLQSPEQRAHLDGL 143
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
YECI+CACCST+CPS+WWN +K++GP+ L+ AYR++IDSRD T +RL++L D +SV+
Sbjct: 144 YECIMCACCSTACPSFWWNPDKFIGPSGLLHAYRFLIDSRDTATEERLSELDDAYSVF 201
Score = 267 (99.0 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 43/73 (58%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++LQS + R LDGLYECI+CACCST+CPS+WWN +K++GP+ L+ AYR++IDSRD T
Sbjct: 129 EHLQSPEQRAHLDGLYECIMCACCSTACPSFWWNPDKFIGPSGLLHAYRFLIDSRDTATE 188
Query: 203 DRLNQLKDPFSVY 215
+RL++L D +SV+
Sbjct: 189 ERLSELDDAYSVF 201
Score = 73 (30.8 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDL 123
FA+YR+NPD D KP MQ+Y +++
Sbjct: 5 FAVYRYNPDV-DTKPYMQDYSLEV 27
Score = 69 (29.3 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
FA+YR+NPD D KP MQ+Y
Sbjct: 5 FAVYRYNPDV-DTKPYMQDY 23
>UNIPROTKB|Q9KQB2 [details] [associations]
symbol:VC_2088 "Succinate dehydrogenase, iron-sulfur
protein" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0000104 "succinate dehydrogenase activity"
evidence=ISS] [GO:0006099 "tricarboxylic acid cycle" evidence=ISS]
[GO:0009055 "electron carrier activity" evidence=ISS] [GO:0045282
"plasma membrane succinate dehydrogenase complex" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900
Prosite:PS00198 GO:GO:0009055 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006099 GO:GO:0051536
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 GO:GO:0045282 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP KO:K00240 ProtClustDB:PRK05950
HSSP:P07014 PIR:F82118 RefSeq:NP_231720.1 ProteinModelPortal:Q9KQB2
SMR:Q9KQB2 DNASU:2613344 GeneID:2613344 KEGG:vch:VC2088
PATRIC:20083207 Uniprot:Q9KQB2
Length = 236
Score = 355 (130.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 69/142 (48%), Positives = 96/142 (67%)
Query: 202 ADRLNQL-KDPFSVYSKIDA--NDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQ 258
+D LN K+ + + + A DK+ I PLP + VV+DL+ DM FY Y ++P+L
Sbjct: 62 SDGLNMNGKNGLACITPLSALKGDKIV-IRPLPGLPVVRDLIVDMTQFYDNYAKVKPFLI 120
Query: 259 RDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 318
D + + LQS ++R LDGLYECI+CACC+TSCPS+WWN +K++GPA L+ AYRW+
Sbjct: 121 ADDALPPSRENLQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWL 180
Query: 319 IDSRDEKTADRLNQLKDPFSVY 340
IDSRD T +RL+ L D FSV+
Sbjct: 181 IDSRDTATDERLSNLDDAFSVF 202
Score = 277 (102.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS ++R LDGLYECI+CACC+TSCPS+WWN +K++GPA L+ AYRW+IDSRD T +R
Sbjct: 132 LQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWLIDSRDTATDER 191
Query: 205 LNQLKDPFSVY 215
L+ L D FSV+
Sbjct: 192 LSNLDDAFSVF 202
Score = 63 (27.2 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDL 123
F++YR+NPD D KP M++Y +++
Sbjct: 5 FSLYRYNPDV-DNKPYMKDYILEV 27
Score = 62 (26.9 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
F++YR+NPD D KP M++Y
Sbjct: 5 FSLYRYNPDV-DNKPYMKDY 23
>TIGR_CMR|VC_2088 [details] [associations]
symbol:VC_2088 "succinate dehydrogenase, iron-sulfur
protein" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0006099
"tricarboxylic acid cycle" evidence=ISS] [GO:0009055 "electron
carrier activity" evidence=ISS] [GO:0045282 "plasma membrane
succinate dehydrogenase complex" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006099 GO:GO:0051536
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 GO:GO:0045282 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 OMA:NCSRTCP KO:K00240 ProtClustDB:PRK05950
HSSP:P07014 PIR:F82118 RefSeq:NP_231720.1 ProteinModelPortal:Q9KQB2
SMR:Q9KQB2 DNASU:2613344 GeneID:2613344 KEGG:vch:VC2088
PATRIC:20083207 Uniprot:Q9KQB2
Length = 236
Score = 355 (130.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 69/142 (48%), Positives = 96/142 (67%)
Query: 202 ADRLNQL-KDPFSVYSKIDA--NDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQ 258
+D LN K+ + + + A DK+ I PLP + VV+DL+ DM FY Y ++P+L
Sbjct: 62 SDGLNMNGKNGLACITPLSALKGDKIV-IRPLPGLPVVRDLIVDMTQFYDNYAKVKPFLI 120
Query: 259 RDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWI 318
D + + LQS ++R LDGLYECI+CACC+TSCPS+WWN +K++GPA L+ AYRW+
Sbjct: 121 ADDALPPSRENLQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWL 180
Query: 319 IDSRDEKTADRLNQLKDPFSVY 340
IDSRD T +RL+ L D FSV+
Sbjct: 181 IDSRDTATDERLSNLDDAFSVF 202
Score = 277 (102.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 46/71 (64%), Positives = 59/71 (83%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQS ++R LDGLYECI+CACC+TSCPS+WWN +K++GPA L+ AYRW+IDSRD T +R
Sbjct: 132 LQSPEERAHLDGLYECIMCACCTTSCPSFWWNPDKFIGPAGLLAAYRWLIDSRDTATDER 191
Query: 205 LNQLKDPFSVY 215
L+ L D FSV+
Sbjct: 192 LSNLDDAFSVF 202
Score = 63 (27.2 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 100 FAIYRWNPDKPDEKPTMQEYKVDL 123
F++YR+NPD D KP M++Y +++
Sbjct: 5 FSLYRYNPDV-DNKPYMKDYILEV 27
Score = 62 (26.9 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 51 FAIYRWNPDKPDEKPTMQEY 70
F++YR+NPD D KP M++Y
Sbjct: 5 FSLYRYNPDV-DNKPYMKDY 23
>UNIPROTKB|O53371 [details] [associations]
symbol:sdhB "Succinate dehydrogenase and fumarate reductase
iron-sulfur protein" species:83332 "Mycobacterium tuberculosis
H37Rv" [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 Pfam:PF13183 PROSITE:PS51379 InterPro:IPR017900
Prosite:PS00198 GO:GO:0005886 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0009055 GO:GO:0016491 GO:GO:0006099
GO:GO:0051536 EMBL:BX842582 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0000104
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00240
ProtClustDB:PRK05950 OMA:LIVDMEP HSSP:P07014 EMBL:CP003248
PIR:F70843 RefSeq:NP_217836.1 RefSeq:NP_337948.1
RefSeq:YP_006516798.1 SMR:O53371 EnsemblBacteria:EBMYCT00000002372
EnsemblBacteria:EBMYCT00000071457 GeneID:13318144 GeneID:887562
GeneID:926326 KEGG:mtc:MT3420 KEGG:mtu:Rv3319 KEGG:mtv:RVBD_3319
PATRIC:18129270 TubercuList:Rv3319 Uniprot:O53371
Length = 263
Score = 242 (90.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 49/114 (42%), Positives = 71/114 (62%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 286
+ P+ + V KDLV DM F+ Y++I+P+L N + +QS DR + D +CI
Sbjct: 119 VEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLITSG-NPPTRERIQSPTDRARYDDTTKCI 177
Query: 287 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
LCACC+TSCP +W G Y GPA ++ A+R+I DSRDE A+RL+ L + V+
Sbjct: 178 LCACCTTSCPVFWHEGS-YFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVW 230
Score = 190 (71.9 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
+QS DR + D +CILCACC+TSCP +W G Y GPA ++ A+R+I DSRDE A+R
Sbjct: 161 IQSPTDRARYDDTTKCILCACCTTSCPVFWHEGS-YFGPAAIVNAHRFIFDSRDEAAAER 219
Query: 205 LNQLKDPFSVY 215
L+ L + V+
Sbjct: 220 LDILNEVDGVW 230
Score = 44 (20.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 41 PAEKPAKYKTFAIYRWNPDKPD 62
P A T I R+NPD PD
Sbjct: 16 PVPDGAVMVTVKIARFNPDDPD 37
Score = 44 (20.5 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 90 PAEKPAKYKTFAIYRWNPDKPD 111
P A T I R+NPD PD
Sbjct: 16 PVPDGAVMVTVKIARFNPDDPD 37
>UNIPROTKB|Q9KNS4 [details] [associations]
symbol:VC_2657 "Fumarate reductase, iron-sulfur protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0009055 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006099
GO:GO:0009061 GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675
SUPFAM:SSF54292 Gene3D:1.10.1060.10 GO:GO:0000104 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 KO:K00245 ProtClustDB:PRK12385 PIR:G82050
RefSeq:NP_232285.1 HSSP:P00364 ProteinModelPortal:Q9KNS4
DNASU:2615674 GeneID:2615674 KEGG:vch:VC2657 PATRIC:20084334
OMA:EKDAEPY Uniprot:Q9KNS4
Length = 252
Score = 162 (62.1 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL---QRDKENIGNAQYLQSLDDRKKLDGL 282
KI PL + + KDL+ DM F + ++I+P++ R E+ N Q + + K+ G
Sbjct: 90 KIEPLANFPIEKDLIVDMTPFIERLEAIKPYIIGNDRKPEDGTNLQTPEQMARYKQFAG- 148
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 330
CI C C +CP + N E +LGPA L A+R+ +DSRD A+R+
Sbjct: 149 --CINCGLCYAACPQFGLNPE-FLGPAALTLAHRYNLDSRDNGKAERM 193
Score = 110 (43.8 bits), Expect = 0.00095, P = 0.00095
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQ+ + + CI C C +CP + N E +LGPA L A+R+ +DSRD A+R
Sbjct: 134 LQTPEQMARYKQFAGCINCGLCYAACPQFGLNPE-FLGPAALTLAHRYNLDSRDNGKAER 192
Query: 205 L 205
+
Sbjct: 193 M 193
>TIGR_CMR|VC_2657 [details] [associations]
symbol:VC_2657 "fumarate reductase, iron-sulfur protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000104
"succinate dehydrogenase activity" evidence=ISS] [GO:0009061
"anaerobic respiration" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006099 GO:GO:0009061
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 SUPFAM:SSF46548
TIGRFAMs:TIGR00384 KO:K00245 ProtClustDB:PRK12385 PIR:G82050
RefSeq:NP_232285.1 HSSP:P00364 ProteinModelPortal:Q9KNS4
DNASU:2615674 GeneID:2615674 KEGG:vch:VC2657 PATRIC:20084334
OMA:EKDAEPY Uniprot:Q9KNS4
Length = 252
Score = 162 (62.1 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 39/108 (36%), Positives = 60/108 (55%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL---QRDKENIGNAQYLQSLDDRKKLDGL 282
KI PL + + KDL+ DM F + ++I+P++ R E+ N Q + + K+ G
Sbjct: 90 KIEPLANFPIEKDLIVDMTPFIERLEAIKPYIIGNDRKPEDGTNLQTPEQMARYKQFAG- 148
Query: 283 YECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 330
CI C C +CP + N E +LGPA L A+R+ +DSRD A+R+
Sbjct: 149 --CINCGLCYAACPQFGLNPE-FLGPAALTLAHRYNLDSRDNGKAERM 193
Score = 110 (43.8 bits), Expect = 0.00095, P = 0.00095
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 145 LQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADR 204
LQ+ + + CI C C +CP + N E +LGPA L A+R+ +DSRD A+R
Sbjct: 134 LQTPEQMARYKQFAGCINCGLCYAACPQFGLNPE-FLGPAALTLAHRYNLDSRDNGKAER 192
Query: 205 L 205
+
Sbjct: 193 M 193
>TIGR_CMR|CHY_1370 [details] [associations]
symbol:CHY_1370 "fumarate reductase, iron-sulfur subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=ISS] [GO:0009061
"anaerobic respiration" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0016491 GO:GO:0006099
GO:GO:0051537 Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 eggNOG:COG0479 HOGENOM:HOG000160590
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 ProtClustDB:PRK05950 KO:K00245
RefSeq:YP_360202.1 ProteinModelPortal:Q3ACD2 STRING:Q3ACD2
GeneID:3727625 KEGG:chy:CHY_1370 PATRIC:21275873 OMA:NLNPARA
BioCyc:CHYD246194:GJCN-1369-MONOMER Uniprot:Q3ACD2
Length = 263
Score = 159 (61.0 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 36/116 (31%), Positives = 65/116 (56%)
Query: 224 VSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWL--QRDKENIG-NAQYLQSLDDRKKLD 280
V +I PLP+ +KDLVPD+ + ++K+++P++ + ++E I +Y Q+ + ++
Sbjct: 85 VIEIAPLPNYKNIKDLVPDLTPLFEKHKNVKPYVIPENEQEFINPTGEYSQTPAELEEYL 144
Query: 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDP 336
CI C C +CP+ + + GP L QAYR+ D+RD +R Q+ +P
Sbjct: 145 QFAYCIKCGACLAACPTVGTTPD-FPGPQALAQAYRYNADNRDFGEKERKVQVDNP 199
>UNIPROTKB|P0AC47 [details] [associations]
symbol:frdB "fumarate reductase iron-sulfur protein"
species:83333 "Escherichia coli K-12" [GO:0016020 "membrane"
evidence=IDA] [GO:0022900 "electron transport chain" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0009296
"flagellum assembly" evidence=IMP] [GO:0001539 "ciliary or
flagellar motility" evidence=IMP] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA;IDA] [GO:0051538 "3 iron, 4 sulfur
cluster binding" evidence=IEA;IDA] [GO:0051537 "2 iron, 2 sulfur
cluster binding" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0006099 "tricarboxylic acid cycle"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000104 "succinate dehydrogenase activity" evidence=IEA]
[GO:0009061 "anaerobic respiration" evidence=IMP] [GO:0006113
"fermentation" evidence=IMP] [GO:0009055 "electron carrier
activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197
PROSITE:PS51085 PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198
GO:GO:0005737 GO:GO:0016020 GO:GO:0009055 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0006099 GO:GO:0051539 GO:GO:0022900 GO:GO:0006113
GO:GO:0009061 GO:GO:0051538 EMBL:U14003 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 EMBL:J01611 EMBL:V00277 GO:GO:0009296
GO:GO:0000104 GO:GO:0001539 eggNOG:COG0479 HOGENOM:HOG000160590
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 PDB:1KF6 PDB:1KFY PDB:1L0V
PDB:2B76 PDB:3CIR PDB:3P4P PDB:3P4Q PDB:3P4R PDB:3P4S PDBsum:1KF6
PDBsum:1KFY PDBsum:1L0V PDBsum:2B76 PDBsum:3CIR PDBsum:3P4P
PDBsum:3P4Q PDBsum:3P4R PDBsum:3P4S PIR:A00377 RefSeq:NP_418577.1
RefSeq:YP_492298.1 ProteinModelPortal:P0AC47 SMR:P0AC47
IntAct:P0AC47 PRIDE:P0AC47 EnsemblBacteria:EBESCT00000004418
EnsemblBacteria:EBESCT00000017881 GeneID:12933707 GeneID:948666
KEGG:ecj:Y75_p4042 KEGG:eco:b4153 PATRIC:32123879 EchoBASE:EB0327
EcoGene:EG10331 KO:K00245 OMA:NPRTPDQ ProtClustDB:PRK12385
BioCyc:EcoCyc:FUM-FE-S BioCyc:ECOL316407:JW4114-MONOMER
BioCyc:MetaCyc:FUM-FE-S EvolutionaryTrace:P0AC47
Genevestigator:P0AC47 Uniprot:P0AC47
Length = 244
Score = 147 (56.8 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 226 KIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYEC 285
K+ L + + +DLV DM +F ++I+P++ + +Q+ K C
Sbjct: 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGC 149
Query: 286 ILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
I C C +CP + N E ++GPA + A+R+ DSRD +R+ QL V+
Sbjct: 150 INCGLCYAACPQFGLNPE-FIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVW 203
>TIGR_CMR|CHY_0064 [details] [associations]
symbol:CHY_0064 "fumarate reductase, iron-sulfur subunit"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=ISS] [GO:0009061
"anaerobic respiration" evidence=ISS] InterPro:IPR001041
InterPro:IPR004489 InterPro:IPR006058 InterPro:IPR009051
InterPro:IPR012285 InterPro:IPR017896 InterPro:IPR025192
Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197 PROSITE:PS51085
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006099 GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00245
RefSeq:YP_358936.1 ProteinModelPortal:Q3AFZ8 STRING:Q3AFZ8
GeneID:3727128 KEGG:chy:CHY_0064 PATRIC:21273325 OMA:GCCASEC
ProtClustDB:CLSK2772298 BioCyc:CHYD246194:GJCN-64-MONOMER
Uniprot:Q3AFZ8
Length = 317
Score = 150 (57.9 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 32/105 (30%), Positives = 54/105 (51%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECI 286
I PL + V++DLV D + ++PWL E Q+ ++ KK++ +CI
Sbjct: 90 IEPLQNFKVIRDLVVDWETKVERLARVKPWLIPRDEFSKETGCRQTPEEFKKINKNSDCI 149
Query: 287 LCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLN 331
LC CC++ C N +L P + +A ++I DSRD+ R++
Sbjct: 150 LCGCCASECNKLSNNDSDFLEPFIFSKAQKFIADSRDKDPLSRIS 194
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 146 QSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRL 205
Q+ ++ KK++ +CILC CC++ C N +L P + +A ++I DSRD+ R+
Sbjct: 134 QTPEEFKKINKNSDCILCGCCASECNKLSNNDSDFLEPFIFSKAQKFIADSRDKDPLSRI 193
Query: 206 N 206
+
Sbjct: 194 S 194
Score = 48 (22.0 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 280 DGLYECILCACCSTSCP 296
+G ++C+ C C T CP
Sbjct: 199 NGAWKCMHCQECVTKCP 215
>TIGR_CMR|SO_0399 [details] [associations]
symbol:SO_0399 "fumarate reductase iron-sulfur protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0000104 "succinate
dehydrogenase activity" evidence=ISS] [GO:0006099 "tricarboxylic
acid cycle" evidence=ISS] [GO:0009061 "anaerobic respiration"
evidence=ISS] InterPro:IPR001041 InterPro:IPR004489
InterPro:IPR006058 InterPro:IPR009051 InterPro:IPR012285
InterPro:IPR017896 InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183
PROSITE:PS00197 PROSITE:PS51379 GO:GO:0009055 GO:GO:0006099
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 HOGENOM:HOG000160590
SUPFAM:SSF46548 TIGRFAMs:TIGR00384 KO:K00245 HSSP:P17596
ProtClustDB:PRK13552 RefSeq:NP_716037.1 ProteinModelPortal:Q8EJR3
SMR:Q8EJR3 GeneID:1168276 KEGG:son:SO_0399 PATRIC:23520501
OMA:CRTLTSK Uniprot:Q8EJR3
Length = 243
Score = 98 (39.6 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 25/105 (23%), Positives = 52/105 (49%)
Query: 227 IYPLPHMYVVKDLVPDMNNFYAQY-KSIQPWLQRDKENIGNAQYLQSL--DDRKKLDGLY 283
+ PLP ++ DL + F + + ++ WL +I + + + ++ +L L
Sbjct: 93 LMPLPGFELIGDLSVNTGKFMRELAERLKLWLHPKANDISIHRLEEPMAPEEAARLYELE 152
Query: 284 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTAD 328
C+ C C ++C + E ++G +M+ R+ +DSRD +TA+
Sbjct: 153 RCVECGVCVSACATKQMR-ETFVGAVGMMKIARFELDSRDARTAE 196
Score = 65 (27.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 99 TFAIYRWNPDKPDEKPTMQEYKV 121
TF I+R++P +P++KP M Y++
Sbjct: 8 TFNIFRYDPQEPNDKPKMVRYQL 30
Score = 64 (27.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 50 TFAIYRWNPDKPDEKPTMQEYK 71
TF I+R++P +P++KP M Y+
Sbjct: 8 TFNIFRYDPQEPNDKPKMVRYQ 29
>TIGR_CMR|CJE_0489 [details] [associations]
symbol:CJE_0489 "succinate dehydrogenase, iron-sulfur
protein subunit" species:195099 "Campylobacter jejuni RM1221"
[GO:0000104 "succinate dehydrogenase activity" evidence=ISS]
[GO:0006099 "tricarboxylic acid cycle" evidence=ISS] [GO:0009055
"electron carrier activity" evidence=ISS] [GO:0045282 "plasma
membrane succinate dehydrogenase complex" evidence=ISS]
InterPro:IPR001041 InterPro:IPR004489 InterPro:IPR006058
InterPro:IPR009051 InterPro:IPR012285 InterPro:IPR017896
InterPro:IPR025192 Pfam:PF13085 Pfam:PF13183 PROSITE:PS00197
PROSITE:PS51379 InterPro:IPR017900 Prosite:PS00198 GO:GO:0009055
GO:GO:0006099 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0051537
Gene3D:3.10.20.30 InterPro:IPR012675 SUPFAM:SSF54292
Gene3D:1.10.1060.10 GO:GO:0000104 eggNOG:COG0479
HOGENOM:HOG000160590 OMA:WSADSRD SUPFAM:SSF46548 TIGRFAMs:TIGR00384
KO:K00240 RefSeq:YP_178508.1 ProteinModelPortal:Q5HW27
STRING:Q5HW27 GeneID:3231250 KEGG:cjr:CJE0489 PATRIC:20042682
ProtClustDB:CLSK878790 BioCyc:CJEJ195099:GJC0-499-MONOMER
Uniprot:Q5HW27
Length = 321
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 27/102 (26%), Positives = 45/102 (44%)
Query: 221 NDKVSKIYPLPHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLD 280
N +I PL + V+ DL+ D + I+P + E QS ++ ++
Sbjct: 84 NPSSIRISPLGNFRVISDLIVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRIS 143
Query: 281 GLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSR 322
++CILC C++ C + Y+ P V A+R DSR
Sbjct: 144 KQWDCILCGSCASECNKLEADSSDYMQPFVFTHAWRAAADSR 185
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 340 340 0.00095 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 49
No. of states in DFA: 599 (64 KB)
Total size of DFA: 233 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.32u 0.06s 28.38t Elapsed: 00:00:10
Total cpu time: 28.33u 0.06s 28.39t Elapsed: 00:00:10
Start: Thu Aug 15 12:25:51 2013 End: Thu Aug 15 12:26:01 2013