RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5785
(340 letters)
>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia
coli [TaxId: 562]}
Length = 132
Score = 97.3 bits (241), Expect = 2e-25
Identities = 57/98 (58%), Positives = 76/98 (77%)
Query: 243 MNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNG 302
M FYAQY+ I+P+L + +N ++LQ + R+KLDGLYECILCACCSTSCPS+WWN
Sbjct: 1 MGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNP 60
Query: 303 EKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
+K++GPA L+ AYR++IDSRD +T RL+ L D FSV+
Sbjct: 61 DKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVF 98
Score = 61.1 bits (147), Expect = 3e-12
Identities = 47/73 (64%), Positives = 61/73 (83%)
Query: 143 QYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTA 202
++LQ + R+KLDGLYECILCACCSTSCPS+WWN +K++GPA L+ AYR++IDSRD +T
Sbjct: 26 EHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETD 85
Query: 203 DRLNQLKDPFSVY 215
RL+ L D FSV+
Sbjct: 86 SRLDGLSDAFSVF 98
>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 96.1 bits (238), Expect = 5e-25
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 243 MNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNG 302
M +F ++I+P++ + +Q+ K CI C C +CP + N
Sbjct: 1 MTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP 60
Query: 303 EKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVY 340
+++GPA + A+R+ DSRD +R+ QL V+
Sbjct: 61 -EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVW 97
Score = 62.6 bits (151), Expect = 9e-13
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 142 AQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKT 201
+Q+ K CI C C +CP + N +++GPA + A+R+ DSRD
Sbjct: 25 GTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNP-EFIGPAAITLAHRYNEDSRDHGK 83
Query: 202 ADRLNQLKDPFSVYS 216
+R+ QL V+S
Sbjct: 84 KERMAQLNSQNGVWS 98
>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 133
Score = 88.0 bits (217), Expect = 6e-22
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 246 FYAQYKSIQPWLQRDKEN-IGNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEK 304
F + ++ W+ KE+ I + + +++ L CI C CC +C + +
Sbjct: 5 FNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED- 63
Query: 305 YLGPAVLMQAYRWIIDSRDEKTADR-LNQLKDPFSVY 340
++G A L + R++ID DE+T + + D V+
Sbjct: 64 FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVF 100
Score = 58.8 bits (141), Expect = 2e-11
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 137 TAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDS 196
IS + + +++ L CI C CC +C + + ++G A L + R++ID
Sbjct: 22 HDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED-FVGAAGLNRVVRFMIDP 80
Query: 197 RDEKTADR-LNQLKDPFSVYS 216
DE+T + + D V+
Sbjct: 81 HDERTDEDYYELIGDDDGVFG 101
Score = 26.4 bits (57), Expect = 3.5
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 8/67 (11%)
Query: 231 PHMYVVKDLVPDMNNFYAQYKSIQPWLQRDKENIGNAQYLQSLDDRKKLDGLYECILCAC 290
+ +D V I P +R E Y + + D DG++ C+
Sbjct: 56 GTKIMREDFVGAAGLNRVVRFMIDPHDERTDE-----DYYELIGDD---DGVFGCMTLLA 107
Query: 291 CSTSCPS 297
C CP
Sbjct: 108 CHDVCPK 114
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein,
N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Length = 106
Score = 64.5 bits (157), Expect = 8e-14
Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 47/150 (31%)
Query: 95 AKYKTFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKL 154
+ T +++++P KP QEYK++ + L+ ++
Sbjct: 2 GRMLTIRVFKYDPQSAVSKPHFQEYKIEEAPSMTI---------------FIVLNMIRET 46
Query: 155 DGLYECILCACCSTSCP--SYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPF 212
C + C NG L L + +
Sbjct: 47 YDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDF---------------------- 84
Query: 213 SVYSKIDANDKVSKIYPLPHMYVVKDLVPD 242
D V + PLP ++KDL D
Sbjct: 85 --------EDGVITLLPLPAFKLIKDLSVD 106
Score = 42.2 bits (99), Expect = 8e-06
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 46 AKYKTFAIYRWNPDKPDEKPTMQEYK 71
+ T +++++P KP QEYK
Sbjct: 2 GRMLTIRVFKYDPQSAVSKPHFQEYK 27
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur
protein, N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 106
Score = 62.6 bits (152), Expect = 4e-13
Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 45/146 (30%)
Query: 99 TFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLY 158
F+IYR+NPD D+ P MQ+Y ++ + + + LD +L
Sbjct: 4 EFSIYRYNPDV-DDAPRMQDYTLEAD----------------EGRDMMLLDALIQLKEKD 46
Query: 159 ECILC--ACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYS 216
+ +C C S N G A ++ L P
Sbjct: 47 PSLSFRRSCREGVCGSDGLNMNGKNGLA----------------CITPISALNQP----- 85
Query: 217 KIDANDKVSKIYPLPHMYVVKDLVPD 242
K I PLP + V++DLV D
Sbjct: 86 -----GKKIVIRPLPGLPVIRDLVVD 106
Score = 34.9 bits (80), Expect = 0.002
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 50 TFAIYRWNPDKPDEKPTMQEYK 71
F+IYR+NPD D+ P MQ+Y
Sbjct: 4 EFSIYRYNPDV-DDAPRMQDYT 24
>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 105
Score = 61.8 bits (150), Expect = 9e-13
Identities = 20/144 (13%), Positives = 37/144 (25%), Gaps = 45/144 (31%)
Query: 99 TFAIYRWNPDKPDEKPTMQEYKVDLNNQLNFSARSSHATAISNAQYLQSLDDRKKLDGLY 158
+ R+NP+ D P Y+V + + L +L K
Sbjct: 7 KIEVVRYNPEV-DTAPHSAFYEVPYDATTSL---------------LDALGYIKDNLAPD 50
Query: 159 ECILCACCSTSCPSYWWNGEKYLGPAVLMQAYRWIIDSRDEKTADRLNQLKDPFSVYSKI 218
+C C S ++ + + D +
Sbjct: 51 LSYRWSCRMAICGS---------CGMMVNNVPKLACKTFLRDYTDGM------------- 88
Query: 219 DANDKVSKIYPLPHMYVVKDLVPD 242
K+ L + + +DLV D
Sbjct: 89 -------KVEALANFPIERDLVVD 105
Score = 34.1 bits (78), Expect = 0.005
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 50 TFAIYRWNPDKPDEKPTMQEYK 71
+ R+NP+ D P Y+
Sbjct: 7 KIEVVRYNPEV-DTAPHSAFYE 27
>d1nlxa_ a.24.17.1 (A:) Pollen allergen Phl P 6 {Timothy grass
(Phleum pratense) [TaxId: 15957]}
Length = 104
Score = 32.5 bits (74), Expect = 0.016
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 29 SFQLSAAASSAVPAEKPAKYKTF-AIYRWNPDKPDEKPTMQEYKTAKNIRSFQLSAAASS 87
SF+ + A ++ VP KYKTF A + + + + + + +AA ++
Sbjct: 15 SFRAAMATTANVPP--ADKYKTFEAAFTVSSKRNLADAVSKAPQLVPKLDEVY-NAAYNA 71
Query: 88 AVPAEKPAKYKTF 100
A A KY+ F
Sbjct: 72 ADHAAPEDKYEAF 84
Score = 24.8 bits (54), Expect = 8.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 66 TMQEYKTAKNIR-SFQLSAAASSAVPAEKPAKYKTFA 101
T +E K +++ SF+ + A ++ VP KYKTF
Sbjct: 2 TTEEQKLIEDVNASFRAAMATTANVPP--ADKYKTFE 36
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 202
Score = 30.1 bits (67), Expect = 0.27
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 129 FSARSSHATAISNAQYLQSLDDRKKLDGLYECILCACCSTSCPSYWWNGEKYLGPA 184
FS H AQ + S + L + C C S + G GPA
Sbjct: 88 FSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHC-PCHGSIYALKDGGVVVSGPA 142
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 25.6 bits (56), Expect = 3.2
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 10/64 (15%)
Query: 147 SLDDRKKLDGLYECILCACCSTSCPSYW----------WNGEKYLGPAVLMQAYRWIIDS 196
+ + L Y+ C+ PS W + L + Y I+
Sbjct: 23 PNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSE 82
Query: 197 RDEK 200
Sbjct: 83 IFPY 86
Score = 25.6 bits (56), Expect = 3.2
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 10/64 (15%)
Query: 272 SLDDRKKLDGLYECILCACCSTSCPSYW----------WNGEKYLGPAVLMQAYRWIIDS 321
+ + L Y+ C+ PS W + L + Y I+
Sbjct: 23 PNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSE 82
Query: 322 RDEK 325
Sbjct: 83 IFPY 86
>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit,
N-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 85
Score = 25.4 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 160 CILCACCSTSCPSYWWNGEKYLGPAV 185
CI C CS CP+ GE ++
Sbjct: 34 CIGCDTCSQYCPTAAIFGEMGEPHSI 59
Score = 25.4 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 285 CILCACCSTSCPSYWWNGEKYLGPAV 310
CI C CS CP+ GE ++
Sbjct: 34 CIGCDTCSQYCPTAAIFGEMGEPHSI 59
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 24.3 bits (52), Expect = 6.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 160 CILCACCSTSCPSYWWNGE 178
CI A C++ CP + +
Sbjct: 11 CIGDAICASLCPDVFEMND 29
Score = 24.3 bits (52), Expect = 6.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 285 CILCACCSTSCPSYWWNGE 303
CI A C++ CP + +
Sbjct: 11 CIGDAICASLCPDVFEMND 29
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 26.2 bits (57), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 160 CILCACCSTSCPSYWWNGE 178
CI C CS +C + W + E
Sbjct: 16 CIGCHTCSVTCKNVWTSRE 34
Score = 26.2 bits (57), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 285 CILCACCSTSCPSYWWNGE 303
CI C CS +C + W + E
Sbjct: 16 CIGCHTCSVTCKNVWTSRE 34
>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId:
1556]}
Length = 55
Score = 23.8 bits (51), Expect = 8.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 160 CILCACCSTSCP 171
CI C C+ CP
Sbjct: 37 CIDCGACAGVCP 48
Score = 23.8 bits (51), Expect = 8.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 285 CILCACCSTSCP 296
CI C C+ CP
Sbjct: 37 CIDCGACAGVCP 48
>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 83
Score = 24.4 bits (52), Expect = 8.7
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 160 CILCACCSTSCPSYW 174
C+LC C +C
Sbjct: 21 CLLCGRCVNACGKNT 35
Score = 24.4 bits (52), Expect = 8.7
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 285 CILCACCSTSCPSYW 299
C+LC C +C
Sbjct: 21 CLLCGRCVNACGKNT 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.407
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,261,750
Number of extensions: 57171
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 49
Length of query: 340
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,226,816
Effective search space: 311611264
Effective search space used: 311611264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)