BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5788
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcription subunit 17 OS=Anopheles
gambiae GN=MED17 PE=3 SV=2
Length = 645
Score = 203 bits (517), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
M +SYEPQELRDLI CQI QHQI ++ LAKCM WQ LSSS+HLG+G VEPLGNASSC+L
Sbjct: 507 MHMSYEPQELRDLILCQISQHQIVCLQNLAKCMAWQILSSSSHLGIGSVEPLGNASSCVL 566
Query: 61 SSPMGDRMIS--VRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
+SP DR+I+ VRC+ Q ++V IA SP KDFF G LV+ R WE+LGG FKEVR+DKME
Sbjct: 567 ASPNSDRLIAVQVRCDSQIDVKVFIAQSPAKDFFPGSLVQGRHWEHLGGHFKEVRFDKME 626
Query: 119 GKNFLNKMELLMASLTS 135
GKNF NKME LMASLTS
Sbjct: 627 GKNFHNKMEFLMASLTS 643
>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription subunit 17
OS=Drosophila melanogaster GN=MED17 PE=1 SV=1
Length = 642
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 2/137 (1%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
M+LSYEPQELRDLI CQI HQIS + LA+CM W LS+S HLG+G VEPLGNASSCLL
Sbjct: 503 MRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGKVEPLGNASSCLL 562
Query: 61 SSPMGDRMISV--RCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
+SP DRMI+V RC+PQ ++V IA SPR+DFF LV E+ WENLGG FKEVR+DK+E
Sbjct: 563 ASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPLVPEKLWENLGGTFKEVRFDKIE 622
Query: 119 GKNFLNKMELLMASLTS 135
GK+FLNKME LMASLTS
Sbjct: 623 GKSFLNKMEFLMASLTS 639
>sp|Q17JT4|MED17_AEDAE Mediator of RNA polymerase II transcription subunit 17 OS=Aedes
aegypti GN=MED17 PE=3 SV=1
Length = 645
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/137 (67%), Positives = 110/137 (80%), Gaps = 2/137 (1%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
M +SYE QELRDLI QI QHQI ++ LAKCM WQ LS+S+HLG+G VEPLGNASSC+L
Sbjct: 507 MHMSYEMQELRDLILYQISQHQIVCLQSLAKCMAWQILSNSSHLGIGSVEPLGNASSCVL 566
Query: 61 SSPMGDRMIS--VRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
+SP DR+I+ VRC+PQ ++V IA SP KDFF G LV+ R WE+LGG FKE+R+DKME
Sbjct: 567 ASPNSDRLIAVQVRCDPQLDVKVYIAQSPGKDFFPGSLVQGRHWEHLGGHFKELRFDKME 626
Query: 119 GKNFLNKMELLMASLTS 135
GKNF NKME LMASLTS
Sbjct: 627 GKNFHNKMEFLMASLTS 643
>sp|Q0VFR9|MED17_XENTR Mediator of RNA polymerase II transcription subunit 17 OS=Xenopus
tropicalis GN=med17 PE=2 SV=1
Length = 639
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 4/137 (2%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
+ LS++ QEL+D + Q+ QHQ+ A+++LAK MGW LS + H+GLG VE +GNASS +
Sbjct: 502 ITLSHQEQELQDFLLSQMSQHQVLAVQQLAKVMGWHVLSFTNHVGLGQVESVGNASSITV 561
Query: 61 SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
+SP GD ISVR P++G +V + PR KD G +++E KW+ L GP+KEV+W+KM
Sbjct: 562 TSPNGDYAISVRNGPESGTKVMVQF-PRSQCKDLPKGDVLQENKWQYLRGPYKEVQWNKM 620
Query: 118 EGKNFLNKMELLMASLT 134
EG+NF+ KMELLMA+LT
Sbjct: 621 EGRNFVYKMELLMAALT 637
>sp|Q5ZID1|MED17_CHICK Mediator of RNA polymerase II transcription subunit 17 OS=Gallus
gallus GN=MED17 PE=2 SV=1
Length = 643
Score = 146 bits (368), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 100/137 (72%), Gaps = 4/137 (2%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
+ LS++ QEL+D + Q+ QHQ+ A+++LAK MGW LS S H+GLG VE +GNAS+ +
Sbjct: 506 ITLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGPVESIGNASAITV 565
Query: 61 SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
+SP GD ISVR P++G +V + PR KD G ++++ KW +L GPFKEV+W+KM
Sbjct: 566 ASPNGDYAISVRNGPESGSKVMVQF-PRSQCKDLPKGDVLQDNKWNHLRGPFKEVQWNKM 624
Query: 118 EGKNFLNKMELLMASLT 134
EG+NF+ KMELLMA+LT
Sbjct: 625 EGRNFVYKMELLMAALT 641
>sp|Q9NVC6|MED17_HUMAN Mediator of RNA polymerase II transcription subunit 17 OS=Homo
sapiens GN=MED17 PE=1 SV=2
Length = 651
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 100/137 (72%), Gaps = 4/137 (2%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
+ LSY+ QEL+D + Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+ +
Sbjct: 512 ITLSYQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITV 571
Query: 61 SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
+SP GD ISVR P++G ++ + PR KD ++++ KW +L GPFKEV+W+KM
Sbjct: 572 ASPSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDNKWSHLRGPFKEVQWNKM 630
Query: 118 EGKNFLNKMELLMASLT 134
EG+NF+ KMELLM++L+
Sbjct: 631 EGRNFVYKMELLMSALS 647
>sp|Q5BIR6|MED17_BOVIN Mediator of RNA polymerase II transcription subunit 17 OS=Bos
taurus GN=MED17 PE=2 SV=1
Length = 651
Score = 143 bits (360), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 4/137 (2%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
+ LS+E QEL+D + Q+ QHQ+ A+++LAK MGWQ LS S H+GLG VE +GNAS+ +
Sbjct: 512 ITLSHEGQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPVESIGNASAITV 571
Query: 61 SSPMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKM 117
+SP GD ISVR P++G ++ + PR KD ++++ KW +L GPFKEV+W+KM
Sbjct: 572 ASPNGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWNHLRGPFKEVQWNKM 630
Query: 118 EGKNFLNKMELLMASLT 134
EG+NF+ KMELLM++L+
Sbjct: 631 EGRNFVYKMELLMSALS 647
>sp|Q8VCD5|MED17_MOUSE Mediator of RNA polymerase II transcription subunit 17 OS=Mus
musculus GN=Med17 PE=1 SV=1
Length = 649
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 99/135 (73%), Gaps = 4/135 (2%)
Query: 3 LSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSS 62
LS++ QEL+D + Q+ QHQ+ A+++LAK MGWQ LS S H+GLG +E +GNAS+ ++S
Sbjct: 512 LSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 571
Query: 63 PMGDRMISVRCEPQAGIQVAIAHSPR---KDFFCGQLVKERKWENLGGPFKEVRWDKMEG 119
P GD ISVR P++G ++ + PR KD ++++ KW +L GPFKEV+W+KMEG
Sbjct: 572 PSGDYAISVRNGPESGSKIMVQF-PRNQCKDLPKSDVLQDSKWSHLRGPFKEVQWNKMEG 630
Query: 120 KNFLNKMELLMASLT 134
+NF+ KMELLM++L+
Sbjct: 631 RNFVYKMELLMSALS 645
>sp|Q08BY1|MED17_DANRE Mediator of RNA polymerase II transcription subunit 17 OS=Danio
rerio GN=med17 PE=2 SV=1
Length = 643
Score = 136 bits (343), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 2/136 (1%)
Query: 1 MKLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLL 60
+ LS++ QEL+D + Q+ QHQ+ A+++LAK MGW LS S H+GLG +E +GNASS +
Sbjct: 505 ITLSHQEQELQDFLLSQMSQHQVHAVQQLAKVMGWHVLSFSNHVGLGSIESIGNASSITV 564
Query: 61 SSPMGDRMISVRCEPQAGIQVAIA--HSPRKDFFCGQLVKERKWENLGGPFKEVRWDKME 118
+SP G+ ISVR P++G +V + S KD V++ KW L G +EV WD+ME
Sbjct: 565 ASPSGEYAISVRNGPESGCKVLVQFPRSQAKDAGRSDAVQDGKWTQLRGAHREVHWDRME 624
Query: 119 GKNFLNKMELLMASLT 134
GKNF+ KMELLMA+LT
Sbjct: 625 GKNFVYKMELLMAALT 640
>sp|Q8YDK9|FLHA_BRUME Flagellar biosynthesis protein FlhA OS=Brucella melitensis biotype
1 (strain 16M / ATCC 23456 / NCTC 10094) GN=flhA PE=1
SV=2
Length = 723
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 116 KMEGKNFLNKMELLMASLTSLIEGITVIAKLLSSRDRREKEDRIGESNESILDKICPGRE 175
+ EG ++ + +L+ L+ ++ +A+LLS +D R DR+G +L+ ICP
Sbjct: 502 RREGYMTVDNLSVLLTHLSEIVR--NNLAQLLSYKDMRILLDRLGPEYRKLLEDICPAHI 559
Query: 176 S 176
S
Sbjct: 560 S 560
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 5 YEPQELRDLIFCQIYQHQISAMEKLAKCMGWQF-----LSSSAHL-GLGGVEPLGNASSC 58
Y P ++ +++FC+ QI KL + +F L +SAHL +G ++ L N C
Sbjct: 516 YLPPKIENVVFCRPGALQIELYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCN-HPC 574
Query: 59 LLSSPMGDRMISVRCE 74
LL S + + S CE
Sbjct: 575 LLFSSVKGKEFSSSCE 590
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,602,660
Number of Sequences: 539616
Number of extensions: 2844623
Number of successful extensions: 6042
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6022
Number of HSP's gapped (non-prelim): 14
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)