Query psy5788
Match_columns 204
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 17:59:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx3_A Ectonucleoside triphosp 21.2 70 0.0024 29.2 3.5 45 39-85 4-52 (452)
2 2e8e_A Hypothetical protein AQ 19.4 43 0.0015 24.2 1.4 21 119-139 28-48 (132)
3 1ml8_A Hypothetical protein (C 19.4 43 0.0015 24.2 1.4 18 122-139 33-50 (134)
4 2onf_A Hypothetical protein TA 19.0 44 0.0015 24.2 1.4 17 123-139 41-57 (140)
5 3by5_A Cobalamin biosynthesis 18.7 43 0.0015 26.5 1.4 94 5-105 21-147 (155)
6 3hs8_A Adaptor protein complex 17.4 90 0.0031 26.4 3.2 46 24-75 198-243 (273)
7 1fme_A FSD-EY peptide; beta-BE 17.0 59 0.002 19.9 1.4 10 6-15 14-23 (28)
8 1usp_A Organic hydroperoxide r 16.6 54 0.0018 23.9 1.4 18 122-139 43-60 (139)
9 2bjo_A Organic hydroperoxide r 16.2 56 0.0019 23.7 1.4 18 122-139 41-58 (136)
10 1vla_A Hydroperoxide resistanc 16.0 56 0.0019 24.6 1.4 17 123-139 48-64 (150)
No 1
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=21.16 E-value=70 Score=29.15 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=17.5
Q ss_pred ccCCccccCCCCccCCccee----EeecCCCCeeeEEeeCCCCceEEEEcC
Q psy5788 39 SSSAHLGLGGVEPLGNASSC----LLSSPMGDRMISVRCEPQAGIQVAIAH 85 (204)
Q Consensus 39 s~S~HvG~GpvE~lGnassi----llASP~gdr~IaVR~~p~~gI~V~I~r 85 (204)
|+.-|||+|...--- .+.+ ..-+|+-.|.|-+=+|. +|+||.|-+
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~iviDaGS-sgtRl~VY~ 52 (452)
T 3zx3_A 4 HHHHHVGTGSNDDDD-KSPDPTHNKPLPENVKYGIVLDAGS-SHTNLYIYK 52 (452)
T ss_dssp -----------------------------CEEEEEEEEECS-SCEEEEEEE
T ss_pred ccccccCCCCCCccc-ccccccccccCCCCceEEEEEEcCC-CCcEEEEEE
Confidence 456799999874321 1222 22357788888888886 899999944
No 2
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=19.45 E-value=43 Score=24.16 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHhhhhhhh
Q psy5788 119 GKNFLNKMELLMASLTSLIEG 139 (204)
Q Consensus 119 GrNFV~KMELLMa~Lt~~~~~ 139 (204)
|-.-.|=+|||+|+|++|.-.
T Consensus 28 G~~g~nP~eLllaala~C~~~ 48 (132)
T 2e8e_A 28 GEKGLNPMELLLVSIGSCSGV 48 (132)
T ss_dssp ETTSBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhhHHH
Confidence 433467899999999999854
No 3
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=19.45 E-value=43 Score=24.23 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhhhhhh
Q psy5788 122 FLNKMELLMASLTSLIEG 139 (204)
Q Consensus 122 FV~KMELLMa~Lt~~~~~ 139 (204)
-.|=+|||+|+|++|.-.
T Consensus 33 g~nP~eLllaala~C~~~ 50 (134)
T 1ml8_A 33 APSPMEMVLMAAGGCSAI 50 (134)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccHHH
Confidence 567899999999999854
No 4
>2onf_A Hypothetical protein TA0195; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE COA; 1.70A {Thermoplasma acidophilum} SCOP: d.227.1.1
Probab=18.98 E-value=44 Score=24.16 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.+=+|||+|+|++|.-.
T Consensus 41 ~~P~eLllaala~C~~~ 57 (140)
T 2onf_A 41 LYPETLFPSVLASCLLT 57 (140)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 57799999999999753
No 5
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=18.65 E-value=43 Score=26.54 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=48.3
Q ss_pred CchHhHHHHHHHHHHHHHH--------------HHHHHHHHHhceeecccC-------------------CccccCCCCc
Q psy5788 5 YEPQELRDLIFCQIYQHQI--------------SAMEKLAKCMGWQFLSSS-------------------AHLGLGGVEP 51 (204)
Q Consensus 5 ~e~QELrDlil~Qi~QHQV--------------~~vq~LAK~MGW~vLs~S-------------------~HvG~GpvE~ 51 (204)
...+++.+.|..-+.++.+ ..+..+|+.+||-+.-++ .++|++.|-.
T Consensus 21 ~~~~~i~~ai~~aL~~~gl~v~~lATid~K~dE~gL~e~A~~lgvPl~~~~~eeL~~v~~~~~~~S~~V~~~~Gv~sVaE 100 (155)
T 3by5_A 21 AASDAIIAAVRAAERAFGVTVDYLATAPLKADEAGLAEAAKGLSLSLEIVAQERLEAVAAETMTFSQASLDHSGSPSVSE 100 (155)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCEEEESSCCSCCHHHHHHHHHTTCCEEECCHHHHHHHHHHHHHTCGGGCSSSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEchhhhCCCHHHHHHHHHhCCCeEEECHHHHhhcccCCCCCCHHHHHHhCCchHHH
Confidence 5677888888877777653 378899999999877664 4677776632
Q ss_pred cCCcceeEeecCCCCeeeEEeeCCCCceEEEEcCCCCCCCCCcccccccccccC
Q psy5788 52 LGNASSCLLSSPMGDRMISVRCEPQAGIQVAIAHSPRKDFFCGQLVKERKWENL 105 (204)
Q Consensus 52 lGnassillASP~gdr~IaVR~~p~~gI~V~I~rs~~~Df~~sdlv~D~KWe~L 105 (204)
+++++.+.|.+ +.|.=|. -..+++|.|++.+... |+++=.-.-|++-
T Consensus 101 ---aAAL~aag~~~-~Ll~~K~-~~~~vTvAIA~~~~p~--p~~~~~~~~~~~~ 147 (155)
T 3by5_A 101 ---AAALAAAGAGA-RLVAPRL-VVGDVTVAIAMTSDAP--HGSRSAIEYGEQE 147 (155)
T ss_dssp ---HHHHHHHCTTC-EECSCCE-EETTEEEEEEECCC-----------------
T ss_pred ---HHHHHhcCCCC-ceEEeeE-ecCCcEEEEEeCCCCC--CCCccHhHhhhhh
Confidence 12222222333 3332221 1257899997764433 3555444455543
No 6
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=17.39 E-value=90 Score=26.43 Aligned_cols=46 Identities=11% Similarity=-0.014 Sum_probs=25.0
Q ss_pred HHHHHHHHHhceeecccCCccccCCCCccCCcceeEeecCCCCeeeEEeeCC
Q psy5788 24 SAMEKLAKCMGWQFLSSSAHLGLGGVEPLGNASSCLLSSPMGDRMISVRCEP 75 (204)
Q Consensus 24 ~~vq~LAK~MGW~vLs~S~HvG~GpvE~lGnassillASP~gdr~IaVR~~p 75 (204)
..++++-+.+||+++.... |+...--+++++.++ +|.+-+-||-+|
T Consensus 198 ~~v~~~l~~lg~~vl~g~D-----pn~~n~v~AGi~~t~-~g~~gcLvRle~ 243 (273)
T 3hs8_A 198 EITKAKIIGFGSALLEEVD-----PNPANFVGAGIIHTK-TTQIGCLLRLEP 243 (273)
T ss_dssp HHHHHHHHHHTCEECTTSS-----SSTTSEEEEEEEECS-SCEEEEEEEEEE
T ss_pred HHHHHHHHhCCeEEeCCCC-----CCcccEEEEEEEEeC-CCCEEEEEEEEE
Confidence 4555666899999997542 221111223344433 555555556555
No 7
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=17.00 E-value=59 Score=19.93 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=8.4
Q ss_pred chHhHHHHHH
Q psy5788 6 EPQELRDLIF 15 (204)
Q Consensus 6 e~QELrDlil 15 (204)
.+.||||||.
T Consensus 14 nekelrdfie 23 (28)
T 1fme_A 14 NEKELRDFIE 23 (28)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4689999986
No 8
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=16.62 E-value=54 Score=23.89 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhhhhhhh
Q psy5788 122 FLNKMELLMASLTSLIEG 139 (204)
Q Consensus 122 FV~KMELLMa~Lt~~~~~ 139 (204)
-.|=+|||+|+|++|.-.
T Consensus 43 g~nP~eLllaala~C~~~ 60 (139)
T 1usp_A 43 GTNPEQLFAAGYAACFQG 60 (139)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 468899999999999864
No 9
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=16.18 E-value=56 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhhhhhh
Q psy5788 122 FLNKMELLMASLTSLIEG 139 (204)
Q Consensus 122 FV~KMELLMa~Lt~~~~~ 139 (204)
-.+=+|||+|+|++|.-.
T Consensus 41 g~nP~eLllaala~C~~~ 58 (136)
T 2bjo_A 41 GTNPEQLFAAGYAACFGG 58 (136)
T ss_dssp CBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 367899999999999854
No 10
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=15.95 E-value=56 Score=24.60 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.|=+|||+|+|++|.-.
T Consensus 48 ~nP~ELllaAlaaC~~~ 64 (150)
T 1vla_A 48 PRPLELVLTGLMGCTGM 64 (150)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 57799999999999854
Done!