Query psy5788
Match_columns 204
No_of_seqs 20 out of 22
Neff 2.4
Searched_HMMs 13730
Date Fri Aug 16 17:59:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5788.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5788hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vlaa_ d.227.1.2 (A:) Hypothe 42.3 7.8 0.00057 26.5 2.7 16 123-138 42-57 (144)
2 d1n2fa_ d.227.1.1 (A:) Organic 41.9 8 0.00058 26.5 2.7 19 123-142 47-65 (142)
3 d2pn2a1 d.227.1.1 (A:1-132) Un 30.5 9.2 0.00067 25.8 1.4 17 123-139 40-56 (132)
4 d1uspa_ d.227.1.1 (A:) Organic 28.2 11 0.00078 25.5 1.4 18 121-138 40-57 (137)
5 d2onfa1 d.227.1.1 (A:1-139) Hy 27.4 19 0.0014 24.4 2.6 17 123-139 40-56 (139)
6 d1ml8a_ d.227.1.2 (A:) Hypothe 26.2 12 0.00089 25.3 1.4 18 122-139 33-50 (134)
7 d2dfaa1 c.6.2.5 (A:1-250) Hypo 24.6 39 0.0029 26.7 4.5 42 2-48 75-116 (250)
8 d1qwia_ d.227.1.1 (A:) Osmotic 24.5 21 0.0015 24.6 2.5 21 119-139 41-61 (142)
9 d1ukka_ d.227.1.1 (A:) Hypothe 24.5 14 0.00099 25.4 1.4 17 123-139 43-59 (141)
10 d1lqla_ d.227.1.1 (A:) Hypothe 23.7 14 0.001 25.5 1.4 17 123-139 39-55 (141)
11 d1xw8a_ c.6.2.5 (A:) Hypotheti 21.8 45 0.0033 26.4 4.3 42 2-48 70-111 (247)
No 1
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=42.27 E-value=7.8 Score=26.51 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhh
Q psy5788 123 LNKMELLMASLTSLIE 138 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~ 138 (204)
.+=+|||+|+|++|+-
T Consensus 42 ~~P~elllaala~C~~ 57 (144)
T d1vlaa_ 42 PRPLELVLTGLMGCTG 57 (144)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 4779999999999984
No 2
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=41.85 E-value=8 Score=26.48 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhhhHHH
Q psy5788 123 LNKMELLMASLTSLIEGITV 142 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~~~~ 142 (204)
.+=+|||+|+|++|+ ++++
T Consensus 47 ~~P~elllaalasC~-~~t~ 65 (142)
T d1n2fa_ 47 TNPEQLFAAGYSACF-IGAM 65 (142)
T ss_dssp BCHHHHHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHH-HHHH
Confidence 377999999999998 4444
No 3
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=30.49 E-value=9.2 Score=25.82 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.+=+|||+|+|++|+-.
T Consensus 40 ~~P~eLllaala~C~~~ 56 (132)
T d2pn2a1 40 FSPTDLLATSLASCMLT 56 (132)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 45699999999999754
No 4
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.25 E-value=11 Score=25.47 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHhhhhhh
Q psy5788 121 NFLNKMELLMASLTSLIE 138 (204)
Q Consensus 121 NFV~KMELLMa~Lt~~~~ 138 (204)
...+=+|||+|+|++|+-
T Consensus 40 ~g~~P~elllaAlasC~~ 57 (137)
T d1uspa_ 40 PGTNPEQLFAAGYAACFQ 57 (137)
T ss_dssp SCBCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 346789999999999973
No 5
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=27.37 E-value=19 Score=24.39 Aligned_cols=17 Identities=24% Similarity=0.155 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.+=+|||+|+|++|.-.
T Consensus 40 ~~P~elllaala~C~~~ 56 (139)
T d2onfa1 40 LYPETLFPSVLASCLLT 56 (139)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 36799999999999864
No 6
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=26.19 E-value=12 Score=25.31 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHhhhhhhh
Q psy5788 122 FLNKMELLMASLTSLIEG 139 (204)
Q Consensus 122 FV~KMELLMa~Lt~~~~~ 139 (204)
-.+=+|||+++|++|.-.
T Consensus 33 gp~P~elllaal~~C~~~ 50 (134)
T d1ml8a_ 33 APSPMEMVLMAAGGCSAI 50 (134)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 357899999999999643
No 7
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=24.57 E-value=39 Score=26.74 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=34.5
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhceeecccCCccccCC
Q psy5788 2 KLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGG 48 (204)
Q Consensus 2 tLS~e~QELrDlil~Qi~QHQV~~vq~LAK~MGW~vLs~S~HvG~Gp 48 (204)
.+...++||+++|.. |+.+++.+|+..|-.+=|--+|=++.+
T Consensus 75 ~~~~s~~el~~~i~~-----Qi~al~~~a~~~g~~l~hVKpHGALYn 116 (250)
T d2dfaa1 75 EMALSPEEVYADVLY-----QIGALSAFLKAEGLPLHHVKPHGALYL 116 (250)
T ss_dssp CCCCCHHHHHHHHHH-----HHHHHHHHHHHTTCCCCCBCCCHHHHH
T ss_pred cCCCCHHHHHHHHHH-----HHHHHHHHHHHcCCceeeechhHHHhh
Confidence 466789999988875 567889999999999989999977654
No 8
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=24.51 E-value=21 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=16.5
Q ss_pred CChhHHHHHHHHHHhhhhhhh
Q psy5788 119 GKNFLNKMELLMASLTSLIEG 139 (204)
Q Consensus 119 GrNFV~KMELLMa~Lt~~~~~ 139 (204)
|-+-.+=+|||+|+|++|+-.
T Consensus 41 ~~~G~~P~elllaAlasC~~~ 61 (142)
T d1qwia_ 41 GEKGTNPEELIGAAHAACFSM 61 (142)
T ss_dssp CCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 344467899999999999843
No 9
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=24.51 E-value=14 Score=25.35 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.+=+|||+|+|.+|+-.
T Consensus 43 p~P~elllaala~C~~~ 59 (141)
T d1ukka_ 43 TNPEELIAAAHAGCFSM 59 (141)
T ss_dssp BCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 46799999999999643
No 10
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=23.67 E-value=14 Score=25.46 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy5788 123 LNKMELLMASLTSLIEG 139 (204)
Q Consensus 123 V~KMELLMa~Lt~~~~~ 139 (204)
.+=+|||+++|++|+-.
T Consensus 39 ~~P~elllaaLa~C~~~ 55 (141)
T d1lqla_ 39 FGPLAALLSGLAACELA 55 (141)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 46789999999999864
No 11
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=21.81 E-value=45 Score=26.37 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.6
Q ss_pred cccCchHhHHHHHHHHHHHHHHHHHHHHHHHhceeecccCCccccCC
Q psy5788 2 KLSYEPQELRDLIFCQIYQHQISAMEKLAKCMGWQFLSSSAHLGLGG 48 (204)
Q Consensus 2 tLS~e~QELrDlil~Qi~QHQV~~vq~LAK~MGW~vLs~S~HvG~Gp 48 (204)
.+...++||++++..| +.+++.+|+..|-.+=|--+|=++-+
T Consensus 70 ~~~~s~~el~~~v~~Q-----i~al~~~~~~~g~~l~hvKpHGALYn 111 (247)
T d1xw8a_ 70 AMQLPPETVYAQTLYQ-----IGALATIARAQGGVMRHVKPHGMLYN 111 (247)
T ss_dssp CCCCCHHHHHHHHHHH-----HHHHHHHHHHTTCCEEEECCCHHHHH
T ss_pred cCCCCHHHHHHHHHHH-----HHHHHHHHHHcCCeeeeechhHHHHH
Confidence 4667899999998765 56889999999999999999977654
Done!