RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5788
         (204 letters)



>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
          Length = 694

 Score = 31.2 bits (71), Expect = 0.38
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 133 LTSLIEGI-TVIAKLLSSRDRREKEDRIGESNESILDKICPGRES 176
           LT L E I   + +LLS +D R   DR+    + ++D ICP + S
Sbjct: 487 LTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQIS 531


>gnl|CDD|149893 pfam08966, DUF1882, Domain of unknown function (DUF1882).  This
           domain is found in a set of hypothetical bacterial
           proteins.
          Length = 72

 Score = 27.0 bits (60), Expect = 2.2
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 119 GKNFLNKMELLMASLTSLI-----EG-ITVIAKLLSSRDRRE 154
           G+ F NK E + A LTS +     +  IT+   L++  D+ E
Sbjct: 30  GRTFYNKFERIDAPLTSSLIKEHLKREITIAHSLINKNDKVE 71


>gnl|CDD|216118 pfam00784, MyTH4, MyTH4 domain.  Domain in myosin and kinesin
          tails, present twice in myosin-VIIa, and also present
          in 3 other myosins.
          Length = 106

 Score = 26.5 bits (59), Expect = 4.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 9  ELRDLIFCQIYQHQISAMEKLAKCMGWQFLS 39
          ELRD I+CQI +       K +   GW+ L 
Sbjct: 19 ELRDEIYCQIIKQTTKNPSKQSALRGWELLY 49


>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
          Length = 321

 Score = 27.3 bits (60), Expect = 5.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 77  AGIQVAIAHSPRKDFFCGQLVKERKW 102
           AG+ VAI HSP    F GQL  E  +
Sbjct: 238 AGLFVAIGHSPNTAIFEGQLELENGY 263


>gnl|CDD|190856 pfam04078, Rcd1, Cell differentiation family, Rcd1-like.  Two of
           the members in this family have been characterized as
           being involved in regulation of Ste11 regulated sex
           genes. Mammalian Rcd1 is a novel transcriptional
           cofactor that mediates retinoic acid-induced cell
           differentiation.
          Length = 262

 Score = 26.8 bits (60), Expect = 8.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 4   SYEPQELRDLIFCQIYQHQISAMEKLA 30
              P+ELRD  F Q+ +   +    L 
Sbjct: 228 KCLPEELRDGTFSQLLKEDPATKRWLL 254


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,966,623
Number of extensions: 878630
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 11
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)