RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5788
         (204 letters)



>d2atza1 d.264.1.3 (A:3-178) Hypothetical protein HP0184
           {Helicobacter pylori [TaxId: 210]}
          Length = 176

 Score = 26.0 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)

Query: 119 GKNFLNKMELLMASLTSLI------EGITVIAKLLSSRDRRE 154
           G+ F NK + + A LTS +        I +   L+   D+ E
Sbjct: 29  GRCFYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVE 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,346
Number of extensions: 30479
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 3
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)