BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5791
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17JT4|MED17_AEDAE Mediator of RNA polymerase II transcription subunit 17 OS=Aedes
aegypti GN=MED17 PE=3 SV=1
Length = 645
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 40/45 (88%)
Query: 36 HHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
HHKNTHHPFPHP+S P+GPSK+R +AGP+ DRYELLE+TKS+ L
Sbjct: 379 HHKNTHHPFPHPASAPLGPSKKRMLAGPSAFDRYELLEMTKSQTL 423
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 25/28 (89%)
Query: 1 MSVNISVEAPVENIIQEISYDGQEIYQL 28
+S NISVEAP+E+ IQEI+YDG EIYQL
Sbjct: 3 VSANISVEAPIESQIQEIAYDGTEIYQL 30
>sp|Q7PVZ2|MED17_ANOGA Mediator of RNA polymerase II transcription subunit 17 OS=Anopheles
gambiae GN=MED17 PE=3 SV=2
Length = 645
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 41/45 (91%)
Query: 36 HHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
HHKNTHHPFPHP+SGP+GPSK+R +AGP+ DR+ELLE+TKS+ L
Sbjct: 379 HHKNTHHPFPHPASGPLGPSKKRMLAGPSAYDRHELLEMTKSQTL 423
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 25/28 (89%)
Query: 1 MSVNISVEAPVENIIQEISYDGQEIYQL 28
+S NISVEAP+EN IQEI+YDG EIYQL
Sbjct: 3 LSANISVEAPIENQIQEIAYDGTEIYQL 30
>sp|Q9VEC1|MED17_DROME Mediator of RNA polymerase II transcription subunit 17
OS=Drosophila melanogaster GN=MED17 PE=1 SV=1
Length = 642
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 35 VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
VH+KN+HHPFPHP+S P+GP+K+R +AGP ADR LL++TKS+ +
Sbjct: 374 VHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRETLLDMTKSQTI 419
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIYQ 27
SVNISVE EN I+EI YDG E+YQ
Sbjct: 4 SVNISVETTCENQIREIGYDGTELYQ 29
>sp|Q08BY1|MED17_DANRE Mediator of RNA polymerase II transcription subunit 17 OS=Danio
rerio GN=med17 PE=2 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 45 PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
PHP+S P G KR +AGP D+ E+ L ++E L
Sbjct: 386 PHPASAPFG-HKRLRLAGPLAYDKAEISSLQQTEGL 420
>sp|Q5ZID1|MED17_CHICK Mediator of RNA polymerase II transcription subunit 17 OS=Gallus
gallus GN=MED17 PE=2 SV=1
Length = 643
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 44 FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
PHP+S P G KR +AGP D+ E+ L +E L
Sbjct: 386 MPHPASAPFG-HKRMRLAGPQAFDKNEISSLQTNEGL 421
>sp|Q9NVC6|MED17_HUMAN Mediator of RNA polymerase II transcription subunit 17 OS=Homo
sapiens GN=MED17 PE=1 SV=2
Length = 651
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 44 FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
PHP+S P G KR ++GP D+ E+ L SE L
Sbjct: 392 MPHPASAPFG-HKRMRLSGPQAFDKNEINSLQSSEGL 427
>sp|Q0VFR9|MED17_XENTR Mediator of RNA polymerase II transcription subunit 17 OS=Xenopus
tropicalis GN=med17 PE=2 SV=1
Length = 639
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIYQL 28
+VNIS+E+ E +QE+ DG E Y L
Sbjct: 6 AVNISIESSAEKQVQEVGLDGSETYVL 32
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 45 PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
PHP+S P G KR +AGP D+ E+ + ++E L
Sbjct: 383 PHPASAPFG-HKRMRLAGPQAFDKNEMGFMQQNEGL 417
>sp|Q8RXN9|BGL05_ARATH Putative beta-glucosidase 5 OS=Arabidopsis thaliana GN=BGLU5 PE=5
SV=2
Length = 500
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 SVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTH 41
++EA +E I Q SYD +Y L + T M HK+TH
Sbjct: 373 TMEAVLEYIKQ--SYDNPPVYILENGTPMTQHKDTH 406
>sp|Q6PAR0|KLD10_MOUSE Kelch domain-containing protein 10 OS=Mus musculus GN=Klhdc10 PE=2
SV=1
Length = 439
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNT-FMVHHKNTHHPF-------------PHPSS 49
N+S + P E EI++DGQ IY L T + + N H + PH
Sbjct: 248 NLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKI 307
Query: 50 GPIGPSKRRC 59
G P+ RRC
Sbjct: 308 G--FPAARRC 315
>sp|Q6PID8|KLD10_HUMAN Kelch domain-containing protein 10 OS=Homo sapiens GN=KLHDC10 PE=2
SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNT-FMVHHKNTHHPF-------------PHPSS 49
N+S + P E EI++DGQ IY L T + + N H + PH
Sbjct: 251 NLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKI 310
Query: 50 GPIGPSKRRC 59
G P+ RRC
Sbjct: 311 G--FPAARRC 318
>sp|Q0IIC2|KLD10_BOVIN Kelch domain-containing protein 10 OS=Bos taurus GN=KLHDC10 PE=2
SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNT-FMVHHKNTHHPF-------------PHPSS 49
N+S + P E EI++DGQ IY L T + + N H + PH
Sbjct: 251 NLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKI 310
Query: 50 GPIGPSKRRC 59
G P+ RRC
Sbjct: 311 G--FPAARRC 318
>sp|Q5U3Y0|KLD10_RAT Kelch domain-containing protein 10 OS=Rattus norvegicus GN=Klhdc10
PE=2 SV=1
Length = 410
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNT-FMVHHKNTHHPF-------------PHPSS 49
N+S + P E EI++DGQ IY L T + + N H + PH
Sbjct: 219 NLSCDLPEERYRHEIAHDGQRIYILGGGTSWTAYSLNKIHAYNLETNAWEEIATKPHEKI 278
Query: 50 GPIGPSKRRC 59
G P+ RRC
Sbjct: 279 G--FPAARRC 286
>sp|Q8VCD5|MED17_MOUSE Mediator of RNA polymerase II transcription subunit 17 OS=Mus
musculus GN=Med17 PE=1 SV=1
Length = 649
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 22 GQE--IYQLSDNTFMV---HHKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
GQE +Y L N ++ HK T PHP+S P G KR ++GP D+ E+ +
Sbjct: 361 GQEDHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFG-HKRMRLSGPQAFDKNEINSI 419
Query: 75 TKSEIL 80
+E L
Sbjct: 420 QSTEGL 425
>sp|Q5BIR6|MED17_BOVIN Mediator of RNA polymerase II transcription subunit 17 OS=Bos
taurus GN=MED17 PE=2 SV=1
Length = 651
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 44 FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
PHP+S P G KR ++GP D+ E+ + SE L
Sbjct: 392 MPHPASAPFG-HKRMRLSGPQAFDKNEINSIQSSEGL 427
>sp|Q5U580|KLD10_XENLA Kelch domain-containing protein 10 OS=Xenopus laevis GN=klhdc10
PE=2 SV=1
Length = 411
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHK-----------NTHHPFPHPSSGPI 52
N + P E EI++DGQ IY L T + NT P G +
Sbjct: 220 NPPCDLPEERYRHEIAHDGQRIYVLGGGTSWTAYSLEKIHAYNFETNTWEDIPTKPHGNL 279
Query: 53 G-PSKRRC 59
G P+ RRC
Sbjct: 280 GFPAARRC 287
>sp|Q28DE7|KLD10_XENTR Kelch domain-containing protein 10 OS=Xenopus tropicalis GN=klhdc10
PE=2 SV=2
Length = 411
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 4 NISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHK-----------NTHHPFPHPSSGPI 52
N + P E EI++DGQ IY L T + NT P G +
Sbjct: 220 NPPCDLPEERYRHEIAHDGQRIYVLGGGTSWTAYSLEKIHAYNFETNTWEDIPTKPYGNL 279
Query: 53 G-PSKRRC 59
G P+ RRC
Sbjct: 280 GFPAARRC 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,513,025
Number of Sequences: 539616
Number of extensions: 1240134
Number of successful extensions: 2944
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2930
Number of HSP's gapped (non-prelim): 27
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)