Query psy5791
Match_columns 81
No_of_seqs 40 out of 42
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:04:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hie_A Protein PSL1, exocyst c 29.2 11 0.00037 26.9 -0.1 39 19-60 28-69 (171)
2 3ld7_A LIN0431 protein; DUF131 14.3 72 0.0025 20.3 1.4 18 14-31 8-25 (101)
3 2jvd_A UPF0291 protein YNZC; s 13.8 85 0.0029 18.6 1.5 14 68-81 10-23 (54)
4 3bhp_A UPF0291 protein YNZC; N 13.0 91 0.0031 18.8 1.5 14 68-81 10-23 (60)
5 4esn_A Hypothetical protein; p 12.0 1.1E+02 0.0037 19.8 1.8 18 14-31 18-35 (104)
6 4fxw_B Splicing factor 1; UHM, 10.6 56 0.0019 22.1 0.0 11 50-60 1-11 (124)
7 1y8x_B Ubiquitin-activating en 10.3 80 0.0027 20.1 0.7 19 22-40 45-64 (98)
8 2jvf_A De novo protein M7; tet 9.9 1.7E+02 0.0059 18.9 2.2 11 17-27 11-21 (96)
9 1r94_A Protein YFHF; tetrameri 9.8 2.3E+02 0.0079 17.7 2.8 33 3-35 40-72 (118)
10 2kpp_A LIN0431 protein; soluti 9.3 1.3E+02 0.0044 19.6 1.4 16 16-31 10-25 (114)
No 1
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=29.16 E-value=11 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=23.3
Q ss_pred ecCc---eeeeecCcchhhhhhcCCCCCCCCCCCCCCCCCccccc
Q psy5791 19 SYDG---QEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCI 60 (81)
Q Consensus 19 ~~dG---~E~y~~p~~lrE~H~qn~s~~~PhPasaP~G~kK~R~l 60 (81)
.-|| .|+|+.-+...|.=+.-++-| .| .+|.|.||.|.|
T Consensus 28 d~~g~~~~esYitHiri~Eds~~ps~~P--p~-~~~~~~KK~R~L 69 (171)
T 3hie_A 28 DHKTGEPPNNYITHVRIIEDSKFPSSRP--PP-DSKLENKKKRLL 69 (171)
T ss_dssp ----CCSCCEEEEEEEEEEESSSSSSCC--CT-TCCGGGEEEEEE
T ss_pred CCCCCccceeeeeeEEEEeecCCCCCCC--CC-CCCCCCccceEE
Confidence 4466 789999888887644334333 22 336799998855
No 2
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=14.28 E-value=72 Score=20.31 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.5
Q ss_pred eeeeeecCceeeeecCcc
Q psy5791 14 IIQEISYDGQEIYQLSDN 31 (81)
Q Consensus 14 ~vqEi~~dG~E~y~~p~~ 31 (81)
.+-+|.+||++.+.-||+
T Consensus 8 ~~avI~vdGk~~~~i~L~ 25 (101)
T 3ld7_A 8 VVAIISQNGKVIREIPLT 25 (101)
T ss_dssp EEEEEEETTEEEEEEECT
T ss_pred cEEEEEECCEEEEEEECC
Confidence 345688888888887776
No 3
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=13.77 E-value=85 Score=18.62 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=12.0
Q ss_pred hHHHHHhhhhccCC
Q psy5791 68 RYELLELTKSEILT 81 (81)
Q Consensus 68 r~ei~~m~kte~L~ 81 (81)
-|||..-+|++|||
T Consensus 10 INeLakK~K~~gLT 23 (54)
T 2jvd_A 10 INELAAKAKAGVIT 23 (54)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCC
Confidence 47888889999997
No 4
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=12.98 E-value=91 Score=18.78 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=12.0
Q ss_pred hHHHHHhhhhccCC
Q psy5791 68 RYELLELTKSEILT 81 (81)
Q Consensus 68 r~ei~~m~kte~L~ 81 (81)
-|||..-+|++|||
T Consensus 10 INeLakK~K~~gLT 23 (60)
T 3bhp_A 10 INELAAKAKAGVIT 23 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCC
Confidence 47888899999997
No 5
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=11.99 E-value=1.1e+02 Score=19.76 Aligned_cols=18 Identities=17% Similarity=-0.010 Sum_probs=14.5
Q ss_pred eeeeeecCceeeeecCcc
Q psy5791 14 IIQEISYDGQEIYQLSDN 31 (81)
Q Consensus 14 ~vqEi~~dG~E~y~~p~~ 31 (81)
..-+|..||++.+.-||+
T Consensus 18 ~~avI~vdGk~~~~i~L~ 35 (104)
T 4esn_A 18 QGAVVTVDGEVYGTYSLA 35 (104)
T ss_dssp CEEEEEETTEEEEEEETT
T ss_pred CEEEEEECCEEEEEEECC
Confidence 355799999999888886
No 6
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=10.59 E-value=56 Score=22.07 Aligned_cols=11 Identities=55% Similarity=0.957 Sum_probs=0.0
Q ss_pred CCCCCCccccc
Q psy5791 50 GPIGPSKRRCI 60 (81)
Q Consensus 50 aP~G~kK~R~l 60 (81)
+|||++|+++.
T Consensus 1 ~~~~~~~~~r~ 11 (124)
T 4fxw_B 1 GPLGSSKKRKR 11 (124)
T ss_dssp -----------
T ss_pred CCCCccccccc
Confidence 58888887654
No 7
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=10.33 E-value=80 Score=20.12 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=16.0
Q ss_pred ceeeeec-CcchhhhhhcCC
Q psy5791 22 GQEIYQL-SDNTFMVHHKNT 40 (81)
Q Consensus 22 G~E~y~~-p~~lrE~H~qn~ 40 (81)
|.-.|++ |.+|+|-++.|.
T Consensus 45 ~k~LYmq~pp~Lee~Tr~NL 64 (98)
T 1y8x_B 45 NRTLYMQSVTSIEERTRPNL 64 (98)
T ss_dssp EEEEECSSCHHHHHHHHHHH
T ss_pred CCeEEEeCcHHHHHHhHhhh
Confidence 7778887 789999999883
No 8
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=9.88 E-value=1.7e+02 Score=18.94 Aligned_cols=11 Identities=55% Similarity=0.625 Sum_probs=7.5
Q ss_pred eeecCceeeee
Q psy5791 17 EISYDGQEIYQ 27 (81)
Q Consensus 17 Ei~~dG~E~y~ 27 (81)
.|..||||+-+
T Consensus 11 kiqrdgqeiei 21 (96)
T 2jvf_A 11 KIQRDGQEIEI 21 (96)
T ss_dssp EEEETTEEEEE
T ss_pred EEeeCCeEEEE
Confidence 35678888754
No 9
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=9.81 E-value=2.3e+02 Score=17.66 Aligned_cols=33 Identities=3% Similarity=-0.128 Sum_probs=20.9
Q ss_pred eeeeeecchhceeeeeecCceeeeecCcchhhh
Q psy5791 3 VNISVEAPVENIIQEISYDGQEIYQLSDNTFMV 35 (81)
Q Consensus 3 v~isiE~~~e~~vqEi~~dG~E~y~~p~~lrE~ 35 (81)
..++++...+..-..+..||...|+.+.|+.-+
T Consensus 40 y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L 72 (118)
T 1r94_A 40 YVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFL 72 (118)
T ss_dssp EEEEEESSCCTTEEEEEETTEEEEEEGGGHHHH
T ss_pred EEEEEccCCCCCceEEEECCEEEEEEHHHHHHh
Confidence 345554322333345667999999999887543
No 10
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=9.32 E-value=1.3e+02 Score=19.58 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=12.5
Q ss_pred eeeecCceeeeecCcc
Q psy5791 16 QEISYDGQEIYQLSDN 31 (81)
Q Consensus 16 qEi~~dG~E~y~~p~~ 31 (81)
-+|..||++.+.-||+
T Consensus 10 avI~vdGk~~~~i~L~ 25 (114)
T 2kpp_A 10 AIISQNGKVIREIPLT 25 (114)
T ss_dssp EEEEETTEEEEEEECT
T ss_pred EEEEECCEEEEEEECC
Confidence 3488899888887775
Done!