Your job contains 1 sequence.
>psy5791
MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCI
AGPTGADRYELLELTKSEILT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5791
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038578 - symbol:MED17 "Mediator complex subunit 1... 175 4.4e-19 2
ZFIN|ZDB-GENE-040302-1 - symbol:med17 "mediator complex s... 75 6.7e-06 2
MGI|MGI:2182585 - symbol:Med17 "mediator complex subunit ... 76 1.4e-05 2
RGD|1311120 - symbol:Med17 "mediator complex subunit 17" ... 76 1.4e-05 2
UNIPROTKB|E2RSF3 - symbol:MED17 "Uncharacterized protein"... 76 1.4e-05 2
UNIPROTKB|F1NY10 - symbol:MED17 "Mediator of RNA polymera... 73 2.2e-05 2
UNIPROTKB|Q5ZID1 - symbol:MED17 "Mediator of RNA polymera... 73 2.2e-05 2
UNIPROTKB|Q5BIR6 - symbol:MED17 "Mediator of RNA polymera... 74 2.2e-05 2
UNIPROTKB|F1STK7 - symbol:MED17 "Uncharacterized protein"... 74 2.2e-05 2
UNIPROTKB|Q9NVC6 - symbol:MED17 "Mediator of RNA polymera... 76 4.5e-05 2
>FB|FBgn0038578 [details] [associations]
symbol:MED17 "Mediator complex subunit 17" species:7227
"Drosophila melanogaster" [GO:0016592 "mediator complex"
evidence=ISS;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS;IMP] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=ISS;IMP] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0009987 "cellular
process" evidence=IMP] [GO:0045498 "sex comb development"
evidence=IGI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033613 "activating
transcription factor binding" evidence=IPI] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] InterPro:IPR019313 Pfam:PF10156 EMBL:AE014297
GO:GO:0005694 GO:GO:0007095 GO:GO:0045944 GO:GO:0045498
GO:GO:0016592 GO:GO:0001104 KO:K15133 CTD:9440 eggNOG:NOG310166
GeneTree:ENSGT00390000011810 OMA:MVQFPRN EMBL:AF244916
EMBL:AF289995 EMBL:AY118662 RefSeq:NP_650686.1 UniGene:Dm.3370
DIP:DIP-20967N IntAct:Q9VEC1 MINT:MINT-774806 STRING:Q9VEC1
PaxDb:Q9VEC1 PRIDE:Q9VEC1 EnsemblMetazoa:FBtr0083558 GeneID:42175
KEGG:dme:Dmel_CG7957 FlyBase:FBgn0038578 InParanoid:Q9VEC1
OrthoDB:EOG459ZWK PhylomeDB:Q9VEC1 GenomeRNAi:42175 NextBio:827514
Bgee:Q9VEC1 Uniprot:Q9VEC1
Length = 642
Score = 175 (66.7 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 35 VHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
VH+KN+HHPFPHP+S P+GP+K+R +AGP ADR LL++TKS+ +
Sbjct: 374 VHYKNSHHPFPHPASAPLGPTKKRMLAGPMAADRETLLDMTKSQTI 419
Score = 88 (36.0 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIYQ 27
SVNISVE EN I+EI YDG E+YQ
Sbjct: 4 SVNISVETTCENQIREIGYDGTELYQ 29
>ZFIN|ZDB-GENE-040302-1 [details] [associations]
symbol:med17 "mediator complex subunit 17"
species:7955 "Danio rerio" [GO:0016592 "mediator complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR019313 Pfam:PF10156
ZFIN:ZDB-GENE-040302-1 GO:GO:0016592 GO:GO:0001104 KO:K15133
CTD:9440 eggNOG:NOG310166 HOVERGEN:HBG103247 OrthoDB:EOG4FXR72
EMBL:BC124507 IPI:IPI00486330 RefSeq:NP_001071042.1 UniGene:Dr.8155
STRING:Q08BY1 GeneID:567560 KEGG:dre:567560 NextBio:20888736
Uniprot:Q08BY1
Length = 643
Score = 75 (31.5 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 25 IYQLSDNTFMV---HHKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
+Y L N + HK T PHP+S P G KR +AGP D+ E+ L ++E
Sbjct: 361 LYVLEHNLHQLIREFHKQTLSSVVMPHPASAPFG-HKRLRLAGPLAYDKAEISSLQQTE 418
Score = 63 (27.2 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V +S+E+ E +QE+S DG E Y
Sbjct: 6 AVRVSIESSCERQVQEVSLDGMETY 30
>MGI|MGI:2182585 [details] [associations]
symbol:Med17 "mediator complex subunit 17" species:10090
"Mus musculus" [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=ISO] [GO:0003712 "transcription
cofactor activity" evidence=ISO] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0004872 "receptor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISO] [GO:0016592 "mediator
complex" evidence=ISO;ISA;IDA] [GO:0019827 "stem cell maintenance"
evidence=IMP] [GO:0030518 "intracellular steroid hormone receptor
signaling pathway" evidence=ISO] [GO:0030521 "androgen receptor
signaling pathway" evidence=ISO] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046966 "thyroid hormone receptor
binding" evidence=ISO] InterPro:IPR019313 Pfam:PF10156
MGI:MGI:2182585 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
GO:GO:0005667 Reactome:REACT_127416 GO:GO:0003713 GO:GO:0006367
GO:GO:0019827 Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104
KO:K15133 CTD:9440 eggNOG:NOG310166 GeneTree:ENSGT00390000011810
HOGENOM:HOG000008073 HOVERGEN:HBG103247 OMA:MVQFPRN
OrthoDB:EOG4FXR72 EMBL:AK033151 EMBL:AK038451 EMBL:AK049112
EMBL:AK151377 EMBL:BC004062 EMBL:BC020185 IPI:IPI00459787
RefSeq:NP_659182.1 UniGene:Mm.44151 ProteinModelPortal:Q8VCD5
DIP:DIP-48407N IntAct:Q8VCD5 STRING:Q8VCD5 PhosphoSite:Q8VCD5
PaxDb:Q8VCD5 PRIDE:Q8VCD5 Ensembl:ENSMUST00000034411 GeneID:234959
KEGG:mmu:234959 UCSC:uc009ofl.1 InParanoid:Q8VCD5 NextBio:382444
Bgee:Q8VCD5 CleanEx:MM_MED17 Genevestigator:Q8VCD5 Uniprot:Q8VCD5
Length = 649
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 22 GQE--IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
GQE +Y L N ++ HK T PHP+S P G KR ++GP D+ E+ +
Sbjct: 361 GQEDHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFG-HKRMRLSGPQAFDKNEINSI 419
Query: 75 TKSE 78
+E
Sbjct: 420 QSTE 423
Score = 59 (25.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGTETY 30
>RGD|1311120 [details] [associations]
symbol:Med17 "mediator complex subunit 17" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0004872 "receptor activity"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005667
"transcription factor complex" evidence=IEA;ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0016592 "mediator
complex" evidence=IEA;ISO] [GO:0019827 "stem cell maintenance"
evidence=IEA;ISO] [GO:0030518 "intracellular steroid hormone
receptor signaling pathway" evidence=ISO] [GO:0030521 "androgen
receptor signaling pathway" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0046966 "thyroid
hormone receptor binding" evidence=IEA;ISO] InterPro:IPR019313
Pfam:PF10156 RGD:1311120 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
GO:GO:0005667 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 EMBL:CH473993 KO:K15133 CTD:9440
GeneTree:ENSGT00390000011810 OMA:MVQFPRN OrthoDB:EOG4FXR72
IPI:IPI00870470 RefSeq:NP_001100271.1 UniGene:Rn.17278
Ensembl:ENSRNOT00000014435 GeneID:300367 KEGG:rno:300367
UCSC:RGD:1311120 NextBio:646793 Uniprot:D4ABU0
Length = 649
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 22 GQE--IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
GQE +Y L N ++ HK T PHP+S P G KR ++GP D+ E+ +
Sbjct: 361 GQEGHLYVLEHNLHLLIREFHKQTLSSIVMPHPASAPFG-HKRMRLSGPQAFDKNEINSI 419
Query: 75 TKSE 78
+E
Sbjct: 420 QSTE 423
Score = 59 (25.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGTETY 30
>UNIPROTKB|E2RSF3 [details] [associations]
symbol:MED17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] InterPro:IPR019313
Pfam:PF10156 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
GO:GO:0005667 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 KO:K15133 CTD:9440 GeneTree:ENSGT00390000011810
OMA:MVQFPRN EMBL:AAEX03012728 RefSeq:XP_533975.3
Ensembl:ENSCAFT00000006758 GeneID:476769 KEGG:cfa:476769
Uniprot:E2RSF3
Length = 651
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
+Y L N ++ HK T PHP+S P G KR ++GP D+ E+ L SE
Sbjct: 368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSLQSSE 425
Score = 59 (25.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGTETY 30
>UNIPROTKB|F1NY10 [details] [associations]
symbol:MED17 "Mediator of RNA polymerase II transcription
subunit 17" species:9031 "Gallus gallus" [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0004872
"receptor activity" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030521 "androgen receptor signaling
pathway" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IEA]
InterPro:IPR019313 Pfam:PF10156 GO:GO:0030521 GO:GO:0045944
GO:GO:0004872 GO:GO:0005667 GO:GO:0003713 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 GeneTree:ENSGT00390000011810
OMA:MVQFPRN IPI:IPI00575325 EMBL:AADN02004882 PRIDE:F1NY10
Ensembl:ENSGALT00000027831 Uniprot:F1NY10
Length = 643
Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 37 HKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
HK T PHP+S P G KR +AGP D+ E+ L +E
Sbjct: 377 HKQTLSSVVMPHPASAPFG-HKRMRLAGPQAFDKNEISSLQTNE 419
Score = 60 (26.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGSETY 30
>UNIPROTKB|Q5ZID1 [details] [associations]
symbol:MED17 "Mediator of RNA polymerase II transcription
subunit 17" species:9031 "Gallus gallus" [GO:0016592 "mediator
complex" evidence=ISS] [GO:0003712 "transcription cofactor
activity" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0004872 "receptor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005667
"transcription factor complex" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0030518 "intracellular steroid hormone receptor signaling
pathway" evidence=ISS] [GO:0030521 "androgen receptor signaling
pathway" evidence=ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0046966 "thyroid
hormone receptor binding" evidence=ISS] InterPro:IPR019313
Pfam:PF10156 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
GO:GO:0005667 GO:GO:0003713 GO:GO:0006367 GO:GO:0046966
GO:GO:0016592 GO:GO:0001104 KO:K15133 CTD:9440 eggNOG:NOG310166
HOGENOM:HOG000008073 HOVERGEN:HBG103247 OrthoDB:EOG4FXR72
EMBL:AJ720853 IPI:IPI00575325 RefSeq:NP_001006280.1
UniGene:Gga.22403 STRING:Q5ZID1 GeneID:419000 KEGG:gga:419000
InParanoid:Q5ZID1 NextBio:20822117 Uniprot:Q5ZID1
Length = 643
Score = 73 (30.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 37 HKNTHHP--FPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
HK T PHP+S P G KR +AGP D+ E+ L +E
Sbjct: 377 HKQTLSSVVMPHPASAPFG-HKRMRLAGPQAFDKNEISSLQTNE 419
Score = 60 (26.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGSETY 30
>UNIPROTKB|Q5BIR6 [details] [associations]
symbol:MED17 "Mediator of RNA polymerase II transcription
subunit 17" species:9913 "Bos taurus" [GO:0046966 "thyroid hormone
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030521 "androgen receptor signaling pathway" evidence=IEA]
[GO:0019827 "stem cell maintenance" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0004872 "receptor activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0016592 "mediator complex" evidence=IEA] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019313 Pfam:PF10156 GO:GO:0030521 GO:GO:0045944
GO:GO:0004872 GO:GO:0005667 GO:GO:0003713 GO:GO:0006367
GO:GO:0016592 GO:GO:0001104 KO:K15133 EMBL:BT021158 IPI:IPI00839450
RefSeq:NP_001029902.2 UniGene:Bt.1348 STRING:Q5BIR6 PRIDE:Q5BIR6
Ensembl:ENSBTAT00000004623 GeneID:541303 KEGG:bta:541303 CTD:9440
eggNOG:NOG310166 GeneTree:ENSGT00390000011810 HOGENOM:HOG000008073
HOVERGEN:HBG103247 InParanoid:Q5BIR6 OMA:MVQFPRN OrthoDB:EOG4FXR72
NextBio:20879129 Uniprot:Q5BIR6
Length = 651
Score = 74 (31.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
+Y L N ++ HK T PHP+S P G KR ++GP D+ E+ + SE
Sbjct: 368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSIQSSE 425
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGTETY 30
>UNIPROTKB|F1STK7 [details] [associations]
symbol:MED17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030521
"androgen receptor signaling pathway" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IEA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0004872 "receptor activity" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] InterPro:IPR019313
Pfam:PF10156 GO:GO:0030521 GO:GO:0045944 GO:GO:0004872
GO:GO:0005667 GO:GO:0003713 GO:GO:0006367 GO:GO:0016592
GO:GO:0001104 KO:K15133 GeneTree:ENSGT00390000011810 OMA:MVQFPRN
EMBL:CU464153 RefSeq:XP_003129834.3 Ensembl:ENSSSCT00000016308
GeneID:100516331 KEGG:ssc:100516331 Uniprot:F1STK7
Length = 651
Score = 74 (31.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
+Y L N ++ HK T PHP+S P G KR ++GP D+ E+ + SE
Sbjct: 368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSIQSSE 425
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E +QE+ DG E Y
Sbjct: 6 AVRISIESACEKQVQEVGLDGTETY 30
>UNIPROTKB|Q9NVC6 [details] [associations]
symbol:MED17 "Mediator of RNA polymerase II transcription
subunit 17" species:9606 "Homo sapiens" [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030374 "ligand-dependent nuclear
receptor transcription coactivator activity" evidence=NAS]
[GO:0030521 "androgen receptor signaling pathway" evidence=IDA]
[GO:0046966 "thyroid hormone receptor binding" evidence=IDA]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0004872 "receptor
activity" evidence=IDA] [GO:0030518 "intracellular steroid hormone
receptor signaling pathway" evidence=IDA] [GO:0003712
"transcription cofactor activity" evidence=IDA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0042809 "vitamin D receptor
binding" evidence=NAS] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR019313 Pfam:PF10156 Reactome:REACT_111045 GO:GO:0030521
GO:GO:0045944 GO:GO:0004872 GO:GO:0005667 GO:GO:0006367
GO:GO:0046966 GO:GO:0030374 GO:GO:0016592 GO:GO:0001104
GO:GO:0042809 KO:K15133 CTD:9440 eggNOG:NOG310166
HOGENOM:HOG000008073 HOVERGEN:HBG103247 OMA:MVQFPRN
OrthoDB:EOG4FXR72 EMBL:AF117657 EMBL:AF105421 EMBL:AK001674
EMBL:AK022156 EMBL:AK023209 EMBL:AC022150 EMBL:BC021101
EMBL:AF104254 IPI:IPI00301139 IPI:IPI00855753 RefSeq:NP_004259.3
UniGene:Hs.444931 ProteinModelPortal:Q9NVC6 DIP:DIP-31451N
IntAct:Q9NVC6 MINT:MINT-275744 STRING:Q9NVC6 PhosphoSite:Q9NVC6
DMDM:296437366 PaxDb:Q9NVC6 PRIDE:Q9NVC6 Ensembl:ENST00000251871
Ensembl:ENST00000530819 GeneID:9440 KEGG:hsa:9440 UCSC:uc001pel.2
UCSC:uc001pem.4 GeneCards:GC11P093517 H-InvDB:HIX0010027
HGNC:HGNC:2375 MIM:603810 MIM:613668 neXtProt:NX_Q9NVC6
PharmGKB:PA162395443 InParanoid:Q9NVC6 PhylomeDB:Q9NVC6
ChiTaRS:MED17 GenomeRNAi:9440 NextBio:35350 ArrayExpress:Q9NVC6
Bgee:Q9NVC6 CleanEx:HS_MED17 Genevestigator:Q9NVC6 Uniprot:Q9NVC6
Length = 651
Score = 76 (31.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 25 IYQLSDNTFMV---HHKNTHHPF--PHPSSGPIGPSKRRCIAGPTGADRYELLELTKSE 78
+Y L N ++ HK T PHP+S P G KR ++GP D+ E+ L SE
Sbjct: 368 LYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFG-HKRMRLSGPQAFDKNEINSLQSSE 425
Score = 54 (24.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 SVNISVEAPVENIIQEISYDGQEIY 26
+V IS+E+ E + E+ DG E Y
Sbjct: 6 AVRISIESACEKQVHEVGLDGTETY 30
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 81 0.00091 102 3 11 23 0.47 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 505 (54 KB)
Total size of DFA: 98 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.66u 0.08s 11.74t Elapsed: 00:00:03
Total cpu time: 11.66u 0.08s 11.74t Elapsed: 00:00:03
Start: Thu Aug 15 12:37:19 2013 End: Thu Aug 15 12:37:22 2013