RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5791
(81 letters)
>gnl|CDD|152726 pfam12291, DUF3623, Protein of unknown function (DUF3623). This
family of proteins is found in bacteria. Proteins in
this family are typically between 261 and 345 amino
acids in length.
Length = 261
Score = 26.1 bits (58), Expect = 2.1
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 53 GPSKRRCIAGPTGADRY 69
GP + C G G +R+
Sbjct: 90 GPRRTPCPPGARGWERF 106
>gnl|CDD|237722 PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis
protein NifN; Provisional.
Length = 455
Score = 26.0 bits (58), Expect = 2.3
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 31 NTFMVHHKNTHHPFPHPSSGPIGP 54
N + HH H P P +
Sbjct: 425 NLLLAHHHAHHEPLPQDFAAAPAR 448
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 25.8 bits (57), Expect = 3.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 8 EAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGAD 67
EAPV E +G+ ++ F + T HP + + P + I GPTG+
Sbjct: 296 EAPVVKDGSEPVPEGRGELDVNIRQF--TYPQTDHPALENVNFTLKPGQMLGICGPTGSG 353
Query: 68 RYELLEL 74
+ LL L
Sbjct: 354 KSTLLSL 360
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 25.2 bits (56), Expect = 3.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 27 QLSDNTFMVHHKNTHHPFPHPSSGPIG 53
+ S + + H N P P P S IG
Sbjct: 95 EWSGDKYSAWHNNKETPLPGPPSSRIG 121
>gnl|CDD|185265 PRK15367, PRK15367, type III secretion system protein SsaD;
Provisional.
Length = 395
Score = 24.9 bits (54), Expect = 5.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 21 DGQEIYQLSDNTFMVHHKNT--HHPF 44
+G EI LS + + H +T ++P
Sbjct: 368 NGGEIVHLSADVVTIKHYDTLINYPL 393
>gnl|CDD|201616 pfam01133, ER, Enhancer of rudimentary. Enhancer of rudimentary
is a protein of unknown function that is highly
conserved in plants and animals. This protein is found
to be an enhancer of the rudimentary gene.
Length = 103
Score = 24.6 bits (54), Expect = 5.2
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 15 IQEISYDGQEIY----QLSDNTFMVHHKNTHHPFPH 46
I+YD +++ L+D + +V+ +T PH
Sbjct: 47 APNITYDISQLFEFIDGLADLSCLVYDHSTQTYLPH 82
>gnl|CDD|206443 pfam14275, DUF4362, Domain of unknown function (DUF4362). This
family of proteins is found in bacteria. Proteins in
this family are typically between 93 and 146 amino
acids in length. There is a conserved IRIV sequence
motif.
Length = 97
Score = 24.0 bits (52), Expect = 7.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 14 IIQEISYDGQEIYQLSDNT 32
I Q + Y G +I +SDN
Sbjct: 45 IFQTLEYSGADILYVSDNR 63
>gnl|CDD|215316 PLN02579, PLN02579, sphingolipid delta-4 desaturase.
Length = 323
Score = 24.3 bits (53), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 21 DGQEIYQ----LSDNTFMVHHKNTHHPFP 45
GQE Y L+ T+ V + N HH FP
Sbjct: 240 PGQETYSYYGPLNLLTWNVGYHNEHHDFP 268
>gnl|CDD|185205 PRK15305, PRK15305, putative fimbrial protein StkG; Provisional.
Length = 353
Score = 24.2 bits (52), Expect = 9.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 18 ISYDGQEIYQLSDNTFMV 35
+ DG+ IYQ++DNT +
Sbjct: 74 VGDDGENIYQMTDNTLLE 91
>gnl|CDD|225923 COG3388, COG3388, Predicted transcriptional regulator
[Transcription].
Length = 101
Score = 23.9 bits (52), Expect = 9.9
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 25 IYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGADRYELLELTKSEIL 80
I +LSD T M HK + I PS++ I + E + SEI
Sbjct: 31 IIKLSDETGMPEHKVRYSLRVLEQENIISPSRQGAILTDDFPEFIEEIIGDLSEIN 86
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.133 0.394
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,988,784
Number of extensions: 295731
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 15
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)