RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5791
         (81 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.29
 Identities = 11/74 (14%), Positives = 17/74 (22%), Gaps = 7/74 (9%)

Query: 3    VNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFPHPSSGPIGPSKRRCI-A 61
            ++I +  PV   I      G+ I +      +                 I          
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720

Query: 62   GPTGADRYELLELT 75
               G     LL  T
Sbjct: 1721 SEKG-----LLSAT 1729


>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
          structural genomics consortium, TBSG fold, FHAA,
          transferase; 2.26A {Mycobacterium tuberculosis} PDB:
          3oun_B* 3otv_A 3ouk_A
          Length = 286

 Score = 26.2 bits (58), Expect = 0.93
 Identities = 6/32 (18%), Positives = 7/32 (21%)

Query: 43 PFPHPSSGPIGPSKRRCIAGPTGADRYELLEL 74
            P   S       +          RY LL  
Sbjct: 7  REPDRESSAPPDDVQLVPGARIANGRYRLLIF 38


>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
           DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
           e.8.1.1
          Length = 847

 Score = 26.4 bits (58), Expect = 1.1
 Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 1   MSVNISVEAPVENIIQEISYDGQEIYQLSDNTFMVHHKNTHHPFP 45
           ++++I V  PV+  I +       I  ++    +           
Sbjct: 193 VAIDIEVYTPVKGRIPDSQKAEFPIISIA----LAGSDGLKKVLV 233


>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
          PEST defense, family GH1, hydrolase; 1.9A {Sorghum
          bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
          Length = 565

 Score = 25.7 bits (57), Expect = 1.7
 Identities = 9/24 (37%), Positives = 9/24 (37%)

Query: 36 HHKNTHHPFPHPSSGPIGPSKRRC 59
          H  N      H  S P   SKRR 
Sbjct: 21 HPNNESFSRHHLCSSPQNISKRRS 44


>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase,
           family 9, cellobiohydrolase; 2.1A {Clostridium
           thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
          Length = 609

 Score = 25.0 bits (54), Expect = 3.5
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 27  QLSDNTF-----MVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTGAD 67
           Q+++        MVHHK     +      P    + R +   + A 
Sbjct: 244 QVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAA 289


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,246,718
Number of extensions: 60412
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)