RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5791
         (81 letters)



>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
           CbhA {Clostridium thermocellum [TaxId: 1515]}
          Length = 511

 Score = 25.2 bits (54), Expect = 1.0
 Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 5/43 (11%)

Query: 27  QLSDNTF-----MVHHKNTHHPFPHPSSGPIGPSKRRCIAGPT 64
           Q+++        MVHHK     +      P    + R +   +
Sbjct: 146 QVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVS 188


>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes
           takasagoensis) [TaxId: 62960]}
          Length = 433

 Score = 23.8 bits (51), Expect = 3.6
 Identities = 6/23 (26%), Positives = 7/23 (30%), Gaps = 2/23 (8%)

Query: 27  QLSDNTF--MVHHKNTHHPFPHP 47
             S N F   V   +  H F   
Sbjct: 107 HTSQNEFYGQVGQGDADHAFWGR 129


>d1nxua_ c.122.1.1 (A:) 2,3-diketogulonate oxidoreductase (YiaK)
           {Escherichia coli [TaxId: 562]}
          Length = 332

 Score = 22.4 bits (47), Expect = 8.6
 Identities = 3/34 (8%), Positives = 9/34 (26%)

Query: 32  TFMVHHKNTHHPFPHPSSGPIGPSKRRCIAGPTG 65
             +    +     P  +      +    +A P+ 
Sbjct: 133 IGICWTNSIAVMPPWGAKECRIGTNPLIVAIPST 166


>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD)
          {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 88

 Score = 21.9 bits (46), Expect = 9.4
 Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)

Query: 19 SYDGQEIYQLSDNTFMVHHKNTHH 42
               E Y +S  T   H+   HH
Sbjct: 10 DPGALEPYGMSAKTLEFHY-GKHH 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 296,867
Number of extensions: 11451
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)