Query psy5792
Match_columns 377
No_of_seqs 225 out of 1899
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 18:05:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 4.4E-36 9.6E-41 292.9 18.3 212 149-372 990-1203(1289)
2 KOG1215|consensus 100.0 9.2E-30 2E-34 271.0 30.1 319 15-373 283-617 (877)
3 KOG1214|consensus 100.0 4.2E-29 9.1E-34 244.4 21.8 234 27-360 990-1233(1289)
4 PLN02919 haloacid dehalogenase 99.9 8.6E-21 1.9E-25 203.5 33.9 269 15-356 567-891 (1057)
5 KOG1215|consensus 99.8 2.4E-19 5.2E-24 191.3 22.8 304 1-328 534-876 (877)
6 PF08450 SGL: SMP-30/Gluconola 99.8 1.8E-15 4E-20 138.1 30.1 222 61-341 2-245 (246)
7 PLN02919 haloacid dehalogenase 99.7 8.3E-16 1.8E-20 165.3 29.5 231 56-361 565-841 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.7 1.4E-14 3.1E-19 132.1 29.1 220 18-297 2-245 (246)
9 PF10282 Lactonase: Lactonase, 99.7 2.7E-12 5.8E-17 123.1 37.4 286 38-370 13-341 (345)
10 PRK11028 6-phosphogluconolacto 99.6 3.7E-12 8E-17 121.3 35.3 277 28-353 2-304 (330)
11 PF10282 Lactonase: Lactonase, 99.6 4.9E-11 1.1E-15 114.3 36.6 287 15-328 36-344 (345)
12 PRK11028 6-phosphogluconolacto 99.5 1.1E-10 2.3E-15 111.2 33.0 271 15-329 34-327 (330)
13 TIGR02604 Piru_Ver_Nterm putat 99.4 8.8E-11 1.9E-15 113.5 25.6 241 7-341 5-339 (367)
14 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 9.8E-09 2.1E-13 95.2 38.4 271 28-357 1-283 (300)
15 PF06977 SdiA-regulated: SdiA- 99.4 9.3E-10 2E-14 99.5 25.8 210 16-306 22-247 (248)
16 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 1.6E-08 3.5E-13 93.8 35.2 264 16-330 31-299 (300)
17 COG3391 Uncharacterized conser 99.3 4.5E-09 9.8E-14 102.0 31.9 266 31-355 5-285 (381)
18 COG3391 Uncharacterized conser 99.3 6.9E-09 1.5E-13 100.7 30.1 275 15-340 30-317 (381)
19 COG3386 Gluconolactonase [Carb 99.3 1.8E-09 3.9E-14 100.9 24.7 218 67-344 35-277 (307)
20 KOG4659|consensus 99.3 4.7E-10 1E-14 116.2 20.9 259 17-351 366-689 (1899)
21 COG2706 3-carboxymuconate cycl 99.2 1.7E-07 3.6E-12 86.4 33.8 293 29-370 4-340 (346)
22 KOG4659|consensus 99.2 2.1E-09 4.5E-14 111.6 21.7 199 148-358 374-627 (1899)
23 COG4257 Vgb Streptogramin lyas 99.2 2.3E-08 5E-13 89.0 25.4 278 13-350 59-344 (353)
24 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.5E-07 3.2E-12 89.4 31.7 245 15-310 46-331 (352)
25 TIGR02658 TTQ_MADH_Hv methylam 99.2 6.8E-07 1.5E-11 84.9 34.6 271 26-354 11-331 (352)
26 PF07995 GSDH: Glucose / Sorbo 99.1 1.3E-07 2.9E-12 90.0 26.5 246 15-349 1-331 (331)
27 PF00058 Ldl_recept_b: Low-den 99.0 8.1E-10 1.8E-14 71.4 6.8 42 290-331 1-42 (42)
28 COG3386 Gluconolactonase [Carb 99.0 2.8E-08 6.1E-13 92.9 16.9 152 188-353 28-193 (307)
29 PF00058 Ldl_recept_b: Low-den 99.0 2.2E-09 4.7E-14 69.4 6.6 41 247-287 1-42 (42)
30 COG2706 3-carboxymuconate cycl 98.9 3E-05 6.5E-10 71.8 32.3 269 16-319 40-332 (346)
31 TIGR02604 Piru_Ver_Nterm putat 98.9 2E-07 4.4E-12 90.1 18.9 153 183-351 12-211 (367)
32 PF06977 SdiA-regulated: SdiA- 98.8 2.2E-06 4.8E-11 77.7 23.3 174 180-362 16-210 (248)
33 PF07995 GSDH: Glucose / Sorbo 98.8 3.6E-07 7.9E-12 87.0 18.3 160 185-350 2-208 (331)
34 KOG1520|consensus 98.8 5.7E-08 1.2E-12 90.9 10.9 148 185-340 115-282 (376)
35 PF03022 MRJP: Major royal jel 98.7 7.2E-06 1.6E-10 76.4 24.5 202 18-296 3-253 (287)
36 COG4257 Vgb Streptogramin lyas 98.7 6.5E-06 1.4E-10 73.7 22.3 247 56-361 59-312 (353)
37 PF02239 Cytochrom_D1: Cytochr 98.7 0.00015 3.2E-09 70.2 33.5 269 28-353 6-302 (369)
38 COG3204 Uncharacterized protei 98.7 9E-06 1.9E-10 73.6 21.3 204 17-297 87-302 (316)
39 PF02239 Cytochrom_D1: Cytochr 98.7 5.3E-05 1.1E-09 73.2 28.4 297 3-354 17-348 (369)
40 PRK04043 tolB translocation pr 98.6 0.00015 3.3E-09 71.3 30.0 235 24-318 152-409 (419)
41 TIGR03606 non_repeat_PQQ dehyd 98.6 8.8E-06 1.9E-10 79.8 20.7 160 181-344 26-250 (454)
42 PRK05137 tolB translocation pr 98.5 0.00036 7.8E-09 69.1 30.4 184 161-361 227-420 (435)
43 KOG1520|consensus 98.5 3.1E-06 6.7E-11 79.5 14.5 158 196-357 75-253 (376)
44 PRK05137 tolB translocation pr 98.5 0.00039 8.4E-09 68.9 29.6 233 28-317 166-420 (435)
45 TIGR03606 non_repeat_PQQ dehyd 98.5 2.7E-05 5.9E-10 76.4 20.3 98 196-298 96-249 (454)
46 smart00135 LY Low-density lipo 98.4 5.4E-07 1.2E-11 58.3 5.7 41 271-312 2-42 (43)
47 PF03088 Str_synth: Strictosid 98.4 2E-06 4.2E-11 64.9 9.4 72 238-311 1-89 (89)
48 PRK04792 tolB translocation pr 98.4 0.00049 1.1E-08 68.4 29.0 245 17-318 173-434 (448)
49 COG4946 Uncharacterized protei 98.4 0.0005 1.1E-08 65.9 26.9 135 197-341 372-508 (668)
50 PRK04043 tolB translocation pr 98.4 0.0016 3.4E-08 64.2 31.6 241 65-362 152-409 (419)
51 PRK00178 tolB translocation pr 98.4 0.00087 1.9E-08 66.3 29.8 243 18-317 154-414 (430)
52 PRK04792 tolB translocation pr 98.4 0.00095 2.1E-08 66.4 29.8 186 161-362 243-434 (448)
53 smart00135 LY Low-density lipo 98.4 1.1E-06 2.4E-11 56.8 5.9 40 316-356 3-42 (43)
54 PF03022 MRJP: Major royal jel 98.4 0.0005 1.1E-08 64.1 25.3 159 183-345 59-257 (287)
55 PRK04922 tolB translocation pr 98.3 0.00075 1.6E-08 66.8 27.9 243 19-318 160-420 (433)
56 PRK02889 tolB translocation pr 98.3 0.0021 4.5E-08 63.5 29.0 236 25-317 162-411 (427)
57 PF03088 Str_synth: Strictosid 98.2 1.1E-05 2.3E-10 60.9 9.2 72 281-354 1-88 (89)
58 PRK04922 tolB translocation pr 98.2 0.0037 8E-08 61.9 29.1 186 161-362 229-420 (433)
59 cd00200 WD40 WD40 domain, foun 98.2 0.0045 9.7E-08 55.4 34.5 265 16-340 10-280 (289)
60 PRK03629 tolB translocation pr 98.2 0.0064 1.4E-07 60.2 30.2 244 18-318 155-415 (429)
61 PRK03629 tolB translocation pr 98.2 0.0099 2.1E-07 58.8 31.1 185 161-361 224-414 (429)
62 TIGR02800 propeller_TolB tol-p 98.1 0.0056 1.2E-07 60.0 28.7 222 37-316 169-404 (417)
63 TIGR02800 propeller_TolB tol-p 98.1 0.01 2.2E-07 58.2 29.8 183 161-360 215-404 (417)
64 PRK00178 tolB translocation pr 98.1 0.012 2.7E-07 58.0 30.2 185 161-361 224-414 (430)
65 PRK02889 tolB translocation pr 98.1 0.012 2.5E-07 58.3 29.5 185 161-361 221-411 (427)
66 TIGR03118 PEPCTERM_chp_1 conse 98.0 0.0089 1.9E-07 54.9 25.2 224 56-316 20-287 (336)
67 PRK01029 tolB translocation pr 98.0 0.023 5E-07 56.2 31.3 188 161-362 212-412 (428)
68 COG3204 Uncharacterized protei 98.0 0.0017 3.6E-08 59.2 19.1 167 185-361 86-271 (316)
69 PF02333 Phytase: Phytase; In 97.9 0.009 2E-07 57.3 23.7 194 29-268 70-293 (381)
70 PRK01742 tolB translocation pr 97.8 0.024 5.3E-07 56.0 27.1 236 20-317 162-412 (429)
71 PRK01742 tolB translocation pr 97.8 0.037 8E-07 54.7 27.7 179 161-361 229-412 (429)
72 KOG4499|consensus 97.8 0.0059 1.3E-07 53.9 18.8 83 184-268 157-244 (310)
73 PRK02888 nitrous-oxide reducta 97.7 0.029 6.2E-07 56.9 25.2 134 235-370 321-491 (635)
74 PRK01029 tolB translocation pr 97.6 0.086 1.9E-06 52.1 29.8 122 188-318 284-412 (428)
75 PF14670 FXa_inhibition: Coagu 97.5 2.1E-05 4.5E-10 48.6 -0.3 25 119-143 1-28 (36)
76 KOG4499|consensus 97.5 0.02 4.4E-07 50.6 17.6 80 274-356 154-244 (310)
77 COG2133 Glucose/sorbosone dehy 97.4 0.083 1.8E-06 51.1 22.9 120 232-354 236-398 (399)
78 cd00200 WD40 WD40 domain, foun 97.4 0.088 1.9E-06 46.9 31.3 179 159-354 72-250 (289)
79 PF01436 NHL: NHL repeat; Int 97.3 0.00091 2E-08 38.9 5.0 27 321-349 1-27 (28)
80 PF01436 NHL: NHL repeat; Int 97.3 0.00065 1.4E-08 39.5 4.3 27 235-262 2-28 (28)
81 COG5276 Uncharacterized conser 97.2 0.18 3.9E-06 46.3 25.3 211 26-298 95-319 (370)
82 PF05096 Glu_cyclase_2: Glutam 97.2 0.19 4.1E-06 45.8 26.3 183 151-353 57-261 (264)
83 PF02333 Phytase: Phytase; In 97.1 0.29 6.4E-06 47.1 24.2 122 232-356 153-293 (381)
84 TIGR03118 PEPCTERM_chp_1 conse 97.1 0.099 2.2E-06 48.2 18.6 183 182-372 20-249 (336)
85 PF06433 Me-amine-dh_H: Methyl 96.9 0.41 8.9E-06 45.2 25.0 268 4-316 19-338 (342)
86 KOG1446|consensus 96.7 0.47 1E-05 43.7 30.6 245 57-360 13-269 (311)
87 KOG0291|consensus 96.6 1 2.2E-05 46.3 31.0 145 149-306 361-507 (893)
88 COG2133 Glucose/sorbosone dehy 96.5 0.14 3E-06 49.6 16.0 73 187-266 316-398 (399)
89 TIGR03032 conserved hypothetic 96.4 0.85 1.8E-05 42.5 21.0 201 151-368 19-246 (335)
90 PRK02888 nitrous-oxide reducta 96.4 0.19 4.1E-06 51.2 16.3 148 196-354 141-352 (635)
91 PF05096 Glu_cyclase_2: Glutam 96.4 0.78 1.7E-05 41.9 25.8 197 19-264 48-260 (264)
92 PF13449 Phytase-like: Esteras 96.2 0.93 2E-05 43.1 19.8 116 236-354 86-252 (326)
93 TIGR03032 conserved hypothetic 96.2 1.1 2.4E-05 41.8 22.8 138 187-339 105-258 (335)
94 COG0823 TolB Periplasmic compo 95.9 1.9 4.2E-05 42.5 20.9 116 192-316 289-409 (425)
95 COG4946 Uncharacterized protei 95.8 2 4.4E-05 42.0 25.5 103 249-354 374-478 (668)
96 KOG0291|consensus 95.6 3.2 7E-05 42.9 25.3 224 17-296 309-539 (893)
97 PF00930 DPPIV_N: Dipeptidyl p 95.6 1.7 3.6E-05 41.8 18.9 108 252-360 203-323 (353)
98 PF06433 Me-amine-dh_H: Methyl 95.6 2.1 4.6E-05 40.5 29.3 286 27-353 2-320 (342)
99 PF01731 Arylesterase: Arylest 94.8 0.11 2.4E-06 38.9 6.3 41 311-353 44-84 (86)
100 KOG0285|consensus 94.8 3.7 8E-05 38.8 22.5 236 57-356 150-392 (460)
101 KOG0268|consensus 93.9 1.8 3.8E-05 40.9 13.2 264 17-309 68-347 (433)
102 KOG1036|consensus 93.8 5.5 0.00012 36.9 22.5 266 11-341 9-294 (323)
103 COG3823 Glutamine cyclotransfe 93.8 4.4 9.5E-05 35.7 14.9 68 242-310 181-260 (262)
104 COG0823 TolB Periplasmic compo 93.7 4.9 0.00011 39.7 16.8 134 208-353 219-358 (425)
105 PF05787 DUF839: Bacterial pro 93.6 1.2 2.5E-05 45.3 12.6 66 232-298 347-455 (524)
106 TIGR03300 assembly_YfgL outer 93.5 7.5 0.00016 37.4 31.4 134 196-350 241-376 (377)
107 PF13449 Phytase-like: Esteras 93.3 1.2 2.5E-05 42.4 11.6 107 232-341 17-166 (326)
108 TIGR02276 beta_rpt_yvtn 40-res 93.3 0.56 1.2E-05 29.3 6.5 41 245-286 2-42 (42)
109 PF01731 Arylesterase: Arylest 93.2 0.25 5.4E-06 37.0 5.4 34 232-265 51-84 (86)
110 TIGR02276 beta_rpt_yvtn 40-res 92.7 0.54 1.2E-05 29.4 5.9 38 26-66 2-41 (42)
111 PF05787 DUF839: Bacterial pro 92.5 2 4.3E-05 43.6 12.4 71 182-253 347-453 (524)
112 KOG0310|consensus 92.5 12 0.00025 36.9 24.6 229 3-287 11-248 (487)
113 PTZ00421 coronin; Provisional 92.4 13 0.00029 37.5 28.1 218 17-288 77-314 (493)
114 KOG0315|consensus 92.0 9.2 0.0002 34.5 24.6 238 16-306 41-287 (311)
115 KOG0279|consensus 91.7 10 0.00023 34.7 26.4 237 16-311 16-264 (315)
116 KOG0278|consensus 91.3 4.4 9.5E-05 36.5 11.6 141 67-263 153-295 (334)
117 KOG0315|consensus 91.3 11 0.00024 34.1 23.1 129 152-295 55-185 (311)
118 KOG0289|consensus 91.2 16 0.00034 35.6 20.2 191 16-259 304-499 (506)
119 PRK11138 outer membrane biogen 90.8 17 0.00036 35.4 29.2 134 196-352 256-393 (394)
120 COG5276 Uncharacterized conser 90.5 15 0.00032 34.2 18.6 164 193-372 93-260 (370)
121 KOG0268|consensus 90.0 6.4 0.00014 37.3 11.9 199 150-372 121-321 (433)
122 KOG0285|consensus 89.8 18 0.0004 34.3 24.9 68 15-85 151-221 (460)
123 PRK11138 outer membrane biogen 89.4 22 0.00047 34.5 30.8 99 246-355 256-355 (394)
124 KOG0272|consensus 88.5 25 0.00054 34.1 19.8 198 58-310 174-378 (459)
125 PF14583 Pectate_lyase22: Olig 88.4 25 0.00055 34.0 15.1 157 150-319 49-234 (386)
126 PF02191 OLF: Olfactomedin-lik 88.4 20 0.00043 32.7 16.5 150 196-351 78-247 (250)
127 PF00930 DPPIV_N: Dipeptidyl p 88.2 25 0.00053 33.7 21.3 145 188-336 187-342 (353)
128 smart00284 OLF Olfactomedin-li 87.4 23 0.00049 32.3 15.2 146 196-348 83-249 (255)
129 KOG0641|consensus 87.0 22 0.00047 31.7 24.0 118 186-311 185-305 (350)
130 KOG0308|consensus 86.1 44 0.00095 34.3 18.4 200 139-353 116-327 (735)
131 KOG1274|consensus 86.1 52 0.0011 35.1 16.9 150 187-354 16-169 (933)
132 KOG0318|consensus 85.6 42 0.0009 33.6 28.8 101 233-338 319-422 (603)
133 TIGR03300 assembly_YfgL outer 85.5 35 0.00077 32.7 30.9 97 246-353 241-338 (377)
134 KOG1274|consensus 85.2 57 0.0012 34.8 26.3 271 17-340 15-298 (933)
135 KOG0266|consensus 84.7 45 0.00097 33.2 27.4 142 152-309 217-364 (456)
136 PF14583 Pectate_lyase22: Olig 83.9 34 0.00074 33.2 13.5 121 248-370 50-194 (386)
137 PF05694 SBP56: 56kDa selenium 83.6 38 0.00082 33.4 13.7 70 186-255 313-394 (461)
138 KOG0310|consensus 83.5 49 0.0011 32.7 18.3 176 149-339 79-256 (487)
139 COG4247 Phy 3-phytase (myo-ino 82.7 38 0.00083 30.9 17.3 104 203-309 120-234 (364)
140 KOG4649|consensus 82.6 39 0.00085 30.9 24.7 143 190-339 141-297 (354)
141 KOG0286|consensus 82.6 41 0.00089 31.2 28.4 137 202-349 161-299 (343)
142 KOG0318|consensus 81.6 61 0.0013 32.5 30.5 179 152-353 334-517 (603)
143 PLN00181 protein SPA1-RELATED; 80.6 87 0.0019 33.6 31.8 194 19-266 536-739 (793)
144 KOG4649|consensus 80.4 47 0.001 30.4 16.7 129 190-362 36-174 (354)
145 PF13360 PQQ_2: PQQ-like domai 79.1 44 0.00095 29.3 24.3 64 26-93 35-101 (238)
146 TIGR02171 Fb_sc_TIGR02171 Fibr 79.0 74 0.0016 34.3 14.9 53 321-374 546-608 (912)
147 COG4247 Phy 3-phytase (myo-ino 78.8 52 0.0011 30.0 22.6 64 151-215 169-234 (364)
148 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.6 82 0.0018 32.1 25.1 63 27-91 69-143 (527)
149 COG3823 Glutamine cyclotransfe 78.4 48 0.001 29.4 17.9 175 161-354 69-260 (262)
150 KOG0272|consensus 78.4 69 0.0015 31.2 17.0 101 184-292 345-445 (459)
151 PLN00181 protein SPA1-RELATED; 78.1 1E+02 0.0022 33.1 35.9 234 17-308 485-737 (793)
152 KOG0292|consensus 77.9 1.1E+02 0.0023 33.1 27.4 109 188-309 210-321 (1202)
153 COG3211 PhoX Predicted phospha 76.7 34 0.00073 34.7 11.1 114 183-297 415-573 (616)
154 PTZ00420 coronin; Provisional 75.7 1E+02 0.0022 31.8 29.2 50 241-290 269-319 (568)
155 PF07645 EGF_CA: Calcium-bindi 75.2 1.2 2.7E-05 28.2 0.6 27 117-143 2-34 (42)
156 KOG2110|consensus 74.1 85 0.0018 30.1 13.2 88 22-111 134-231 (391)
157 PF05694 SBP56: 56kDa selenium 74.0 15 0.00033 36.1 7.8 76 279-355 313-421 (461)
158 PF13360 PQQ_2: PQQ-like domai 74.0 61 0.0013 28.4 25.9 56 37-93 2-61 (238)
159 KOG0288|consensus 73.9 91 0.002 30.3 16.4 211 56-296 217-450 (459)
160 KOG0273|consensus 73.7 98 0.0021 30.6 19.9 73 234-307 316-389 (524)
161 KOG4328|consensus 72.4 84 0.0018 31.0 12.2 151 184-341 186-342 (498)
162 KOG2048|consensus 72.0 1.3E+02 0.0028 31.2 26.2 162 182-354 380-549 (691)
163 KOG0646|consensus 71.8 1.1E+02 0.0023 30.3 18.8 211 3-268 62-310 (476)
164 PF02897 Peptidase_S9_N: Proly 71.3 1E+02 0.0023 29.9 27.3 112 196-316 287-411 (414)
165 KOG0281|consensus 70.6 88 0.0019 29.8 11.6 145 187-353 323-477 (499)
166 COG3211 PhoX Predicted phospha 70.3 73 0.0016 32.4 11.7 65 233-298 415-519 (616)
167 KOG0308|consensus 70.1 1.4E+02 0.003 30.9 16.4 194 16-264 118-326 (735)
168 KOG0306|consensus 69.7 1.5E+02 0.0033 31.2 19.1 138 151-306 522-661 (888)
169 KOG0292|consensus 69.6 1.4E+02 0.0031 32.2 13.9 159 183-355 8-167 (1202)
170 KOG0266|consensus 69.6 1.2E+02 0.0027 30.1 26.1 85 17-104 205-295 (456)
171 PF06739 SBBP: Beta-propeller 69.5 5.6 0.00012 24.7 2.6 20 235-255 13-32 (38)
172 KOG0279|consensus 69.3 95 0.0021 28.7 24.7 158 187-355 66-224 (315)
173 KOG0294|consensus 67.6 1.1E+02 0.0024 28.8 22.3 233 16-314 44-288 (362)
174 KOG0277|consensus 67.1 1E+02 0.0022 28.2 16.4 51 161-215 171-221 (311)
175 KOG0281|consensus 66.8 50 0.0011 31.4 9.2 78 22-105 325-408 (499)
176 KOG0275|consensus 66.8 1.2E+02 0.0025 28.7 14.8 51 238-290 441-492 (508)
177 KOG0282|consensus 66.6 1.4E+02 0.0031 29.6 17.7 195 61-310 261-463 (503)
178 KOG0650|consensus 66.4 1.6E+02 0.0035 30.2 15.4 73 184-267 566-639 (733)
179 KOG0276|consensus 64.0 1.8E+02 0.004 30.0 22.2 67 16-84 98-168 (794)
180 KOG1334|consensus 59.9 86 0.0019 31.2 9.8 140 235-375 233-424 (559)
181 KOG2048|consensus 59.0 2.3E+02 0.0049 29.5 28.3 87 17-105 27-118 (691)
182 KOG0277|consensus 58.1 1.5E+02 0.0033 27.1 14.9 104 151-270 75-185 (311)
183 KOG2111|consensus 57.4 1.7E+02 0.0037 27.5 19.7 176 4-224 115-322 (346)
184 KOG0772|consensus 57.0 2.2E+02 0.0048 28.7 19.7 226 17-278 169-407 (641)
185 PTZ00486 apyrase Superfamily; 56.7 76 0.0016 30.3 8.6 52 26-77 123-182 (352)
186 PF15416 DUF4623: Domain of un 56.4 1.3E+02 0.0029 28.6 9.9 73 196-268 193-274 (442)
187 PF08309 LVIVD: LVIVD repeat; 55.2 52 0.0011 20.9 5.5 32 60-92 3-35 (42)
188 PRK13616 lipoprotein LpqB; Pro 55.1 2.6E+02 0.0057 29.0 16.0 102 236-341 449-558 (591)
189 KOG3621|consensus 52.9 2.9E+02 0.0064 28.9 15.9 32 184-216 124-155 (726)
190 cd01475 vWA_Matrilin VWA_Matri 52.4 9 0.00019 34.1 1.8 23 116-138 186-209 (224)
191 PF08662 eIF2A: Eukaryotic tra 52.0 1.6E+02 0.0034 25.5 19.7 135 208-355 40-181 (194)
192 PTZ00420 coronin; Provisional 51.9 2.9E+02 0.0063 28.5 27.7 193 152-355 89-295 (568)
193 PF07433 DUF1513: Protein of u 51.1 2.2E+02 0.0047 26.8 15.6 135 185-336 5-150 (305)
194 KOG2110|consensus 49.9 2.4E+02 0.0053 27.1 15.9 63 151-216 186-249 (391)
195 KOG0299|consensus 49.6 2.7E+02 0.0059 27.5 23.0 264 17-341 144-445 (479)
196 KOG0303|consensus 49.2 2.6E+02 0.0057 27.2 18.1 154 186-353 133-294 (472)
197 KOG2139|consensus 49.2 2.5E+02 0.0055 27.0 14.0 156 190-355 156-313 (445)
198 KOG0286|consensus 49.2 2.3E+02 0.0049 26.5 25.2 94 186-288 231-326 (343)
199 TIGR03075 PQQ_enz_alc_DH PQQ-d 47.6 3.2E+02 0.007 27.8 23.4 26 65-91 66-92 (527)
200 PF12947 EGF_3: EGF domain; I 46.2 5.1 0.00011 24.6 -0.5 20 119-138 1-22 (36)
201 KOG4378|consensus 45.7 3.3E+02 0.0072 27.4 22.8 118 185-311 122-241 (673)
202 TIGR02171 Fb_sc_TIGR02171 Fibr 43.5 1.9E+02 0.0041 31.5 9.9 98 246-346 319-424 (912)
203 KOG0301|consensus 43.0 4.2E+02 0.0091 27.8 16.5 94 155-265 195-288 (745)
204 KOG0282|consensus 43.0 3.5E+02 0.0077 26.9 14.6 120 178-307 293-413 (503)
205 PF02897 Peptidase_S9_N: Proly 42.7 3.2E+02 0.007 26.4 22.6 161 187-358 229-409 (414)
206 KOG0276|consensus 41.6 4.3E+02 0.0093 27.5 26.3 215 17-287 15-237 (794)
207 PF02191 OLF: Olfactomedin-lik 40.1 2.9E+02 0.0063 25.1 23.3 62 24-86 27-96 (250)
208 PRK13616 lipoprotein LpqB; Pro 39.6 4.6E+02 0.0099 27.3 19.9 156 186-359 351-533 (591)
209 KOG1538|consensus 39.1 4.9E+02 0.011 27.4 22.3 241 10-288 7-274 (1081)
210 KOG0269|consensus 37.1 2.7E+02 0.0058 29.6 9.6 143 201-350 104-246 (839)
211 KOG0269|consensus 35.7 5.4E+02 0.012 27.4 11.4 107 152-267 102-209 (839)
212 KOG0294|consensus 32.4 4.4E+02 0.0096 24.9 20.0 74 185-267 209-283 (362)
213 PF14339 DUF4394: Domain of un 32.1 3.8E+02 0.0083 24.2 11.3 67 183-252 25-91 (236)
214 KOG4328|consensus 31.4 5.4E+02 0.012 25.6 20.0 191 152-355 249-452 (498)
215 PTZ00421 coronin; Provisional 31.0 5.7E+02 0.012 25.8 33.7 195 152-355 90-292 (493)
216 KOG1539|consensus 30.9 7E+02 0.015 26.9 27.6 92 16-108 245-345 (910)
217 COG4993 Gcd Glucose dehydrogen 30.6 6.5E+02 0.014 26.3 18.6 26 67-93 213-239 (773)
218 smart00179 EGF_CA Calcium-bind 29.2 47 0.001 19.7 1.9 19 119-138 5-25 (39)
219 smart00181 EGF Epidermal growt 29.1 42 0.0009 19.6 1.6 19 124-142 6-28 (35)
220 PF03664 Glyco_hydro_62: Glyco 28.6 2.8E+02 0.0061 25.2 7.2 54 286-341 141-206 (271)
221 PF05345 He_PIG: Putative Ig d 28.6 58 0.0012 21.4 2.3 21 321-341 10-30 (49)
222 PF06079 Apyrase: Apyrase; In 28.5 1.9E+02 0.0041 26.9 6.4 51 27-77 63-119 (291)
223 KOG0284|consensus 28.0 1.6E+02 0.0034 28.8 5.9 98 187-293 141-238 (464)
224 PF14339 DUF4394: Domain of un 27.6 2.7E+02 0.0058 25.1 7.1 58 16-74 27-91 (236)
225 KOG4378|consensus 27.1 6.7E+02 0.015 25.4 17.8 122 150-287 177-303 (673)
226 KOG1272|consensus 27.0 6.1E+02 0.013 25.4 9.7 202 151-375 222-428 (545)
227 KOG1445|consensus 26.5 7.7E+02 0.017 25.9 13.6 182 159-358 602-790 (1012)
228 KOG1272|consensus 26.4 5E+02 0.011 26.0 9.0 60 251-312 267-326 (545)
229 KOG1407|consensus 26.2 5.2E+02 0.011 23.8 21.0 116 161-292 88-204 (313)
230 KOG0918|consensus 26.1 2.2E+02 0.0047 27.9 6.5 33 237-269 314-346 (476)
231 KOG0650|consensus 26.0 2.1E+02 0.0046 29.4 6.6 71 277-353 566-637 (733)
232 KOG0918|consensus 25.8 1.3E+02 0.0029 29.3 5.0 41 6-46 302-342 (476)
233 KOG1446|consensus 24.9 5.9E+02 0.013 23.9 31.4 239 15-309 14-262 (311)
234 KOG0270|consensus 24.6 6.9E+02 0.015 24.7 15.5 162 189-360 248-411 (463)
235 PF13570 PQQ_3: PQQ-like domai 23.7 1E+02 0.0022 18.8 2.7 22 63-85 16-37 (40)
236 PF09910 DUF2139: Uncharacteri 23.4 5.6E+02 0.012 24.2 8.4 39 323-362 107-148 (339)
237 KOG3914|consensus 23.2 7E+02 0.015 24.2 13.5 149 18-215 65-223 (390)
238 KOG0263|consensus 22.9 9.2E+02 0.02 25.5 21.5 150 189-353 498-649 (707)
239 KOG0646|consensus 21.2 8.3E+02 0.018 24.3 14.8 154 187-355 84-249 (476)
240 KOG0263|consensus 20.9 1E+03 0.022 25.2 20.0 113 184-307 535-647 (707)
241 TIGR03803 Gloeo_Verruco Gloeo_ 20.3 2.2E+02 0.0047 17.2 4.2 26 247-273 2-32 (34)
242 PHA02713 hypothetical protein; 20.1 9.5E+02 0.021 24.6 20.1 50 27-76 303-359 (557)
No 1
>KOG1214|consensus
Probab=100.00 E-value=4.4e-36 Score=292.92 Aligned_cols=212 Identities=28% Similarity=0.453 Sum_probs=191.0
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
..+|+++++.. |..+.+++...+++.....+ -..+-++|||||.++.+|||+|....+|.|+.++|.+.++++.
T Consensus 990 gt~LL~aqg~~--I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n--- 1064 (1289)
T KOG1214|consen 990 GTFLLYAQGQQ--IGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN--- 1064 (1289)
T ss_pred cceEEEeccce--EEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeec---
Confidence 46999999988 99999999876442222111 1234589999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEE
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARA 306 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~ 306 (377)
.++..|+||||||+.+|+||||+...+|+++.|||+++++|+.++|-+||+|++|+.+|.||||||. ++++|++.
T Consensus 1065 ----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets 1140 (1289)
T KOG1214|consen 1065 ----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETS 1140 (1289)
T ss_pred ----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceee
Confidence 8999999999999999999999999999999999999999999999999999999999999999997 48999999
Q ss_pred ecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 307 ~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
+|||+++++|+++++.-|+||++|++.+.|.|+|+ +.++++.+..+|..||++.. ++.-||+.
T Consensus 1141 ~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDA-Gt~rleC~~p~g~gRR~i~~--~LqYPF~i 1203 (1289)
T KOG1214|consen 1141 SMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDA-GTKRLECTLPDGTGRRVIQN--NLQYPFSI 1203 (1289)
T ss_pred ccCCccceEEeecccCCCCCceeCcccceeeEEec-CCcceeEecCCCCcchhhhh--cccCceee
Confidence 99999999999999999999999999999999999 99999999999999998864 45555553
No 2
>KOG1215|consensus
Probab=99.97 E-value=9.2e-30 Score=270.96 Aligned_cols=319 Identities=24% Similarity=0.394 Sum_probs=262.2
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
++.|.|.+.+.-.+.+|| ..++++. .+ |. ...+.++ +|+++.+..+.+.. ..+....
T Consensus 283 ~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 341 (877)
T KOG1215|consen 283 LDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-IL-LSKLCHG----------YWTDGLNECAERVLKCSHKCPD 341 (877)
T ss_pred cCCCCcccccccccceee---------eeecccCCce-ee-ecccCcc----------ccccccccchhhcccccCCCCc
Confidence 346888888888888888 6777887 66 53 2333333 58888887777776 5555444
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCC-cCCCCCCceeccccC-CCccc---cCCcC----CCc---CCCcEEEEEeCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIK-YNKNESKVQQVLGPL-SKVSL---AAKVD----FHA---GISDFILFSVNSG 159 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~-C~~~~g~Cs~~C~~~-~~~~~---~~G~~----~C~---~~~~~l~~s~~~~ 159 (377)
+...... ..+...+..... ...+ |...+|+|+|+|++. ++.+. +.||. .|. ....+++++.+..
T Consensus 342 ~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~c~~~~~~~~~l~~s~~~~ 418 (877)
T KOG1215|consen 342 VSVGPRCDCMGAKVLPLGAR---TDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDKCEASDQPEAFLLFSNRHD 418 (877)
T ss_pred cccCCcccCCccceeccccc---ccCCcccccCCccceeccCCCCCceeEecCCCcEeccCCceecCCCCcEEEEecCcc
Confidence 4333333 333333333322 2556 999999999999954 66666 78887 554 3678999999998
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ 239 (377)
|+++.++... ...|+.....+.++++|..++.+||+|.....|.+...++.....+.. .+.-.|.+
T Consensus 419 --ir~~~~~~~~-----~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~-------~g~~~~~~ 484 (877)
T KOG1215|consen 419 --IRRISLDCSD-----VSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCG-------DGLCIPEG 484 (877)
T ss_pred --ceecccCCCc-----ceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEec-------cCccccCc
Confidence 9999998762 456777778899999999999999999999999999999987666665 67888999
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~ 319 (377)
||+||+.+++||+|.....|.+.+++|..+.+++...+..|+.+++||..|++||+||+..++|.|+.+||..+..++..
T Consensus 485 lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~ 564 (877)
T KOG1215|consen 485 LAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN 564 (877)
T ss_pred EEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC
Confidence 99999999999999999999999999999999999888999999999999999999998667999999999999999998
Q ss_pred CCCCceEEEEeCCCCEEEEEEeCCCC-eEEEEEccCCceEEEEecCCCCCccccc
Q psy5792 320 IIMPIKDITLDRKNKRVYWCYSVGSN-VLESMDYSGGSKMQLKLSSNIKNALLDR 373 (377)
Q Consensus 320 ~~~~P~glalD~~~~~LYw~d~~~~~-~i~~~~~~G~~~~~~~~~~~~~~p~~~~ 373 (377)
++.+|+||++|...+++||+|. ... .|++++++|.+++ +......+|||+..
T Consensus 565 ~~~~p~glt~d~~~~~~yw~d~-~~~~~i~~~~~~g~~r~-~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 565 GILWPNGLTIDYETDRLYWADA-KLDYTIESANMDGQNRR-VVDSEDLPHPFGLS 617 (877)
T ss_pred CccCCCcceEEeecceeEEEcc-cCCcceeeeecCCCceE-EeccccCCCceEEE
Confidence 8899999999999999999999 887 8999999999888 66678899998764
No 3
>KOG1214|consensus
Probab=99.97 E-value=4.2e-29 Score=244.37 Aligned_cols=234 Identities=21% Similarity=0.338 Sum_probs=199.4
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc-EEE-----EEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCC
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK-VAK-----VVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNA 98 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~-~~~-----i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~ 98 (377)
+.+| ..+..++|.+..++|+ .+. +++ -....|.||++ .+.+|||||+..++|.+..+.|+..+.+.
T Consensus 990 gt~L--L~aqg~~I~~lplng~~~~K~~ak~~l~-~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~--- 1063 (1289)
T KOG1214|consen 990 GTFL--LYAQGQQIGYLPLNGTRLQKDAAKTLLS-LPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV--- 1063 (1289)
T ss_pred cceE--EEeccceEEEeecCcchhchhhhhceEe-cccceeeeeecccccceEEEeecCCCccccccccCCCCceee---
Confidence 3466 4457789999999999 443 121 23456899999 89999999998888887776565543321
Q ss_pred CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 99 GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 99 ~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
T Consensus 1064 -------------------------------------------------------------------------------- 1063 (1289)
T KOG1214|consen 1064 -------------------------------------------------------------------------------- 1063 (1289)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--
Q psy5792 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE-- 256 (377)
Q Consensus 179 ~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~-- 256 (377)
-.++..|.|||+|+....|||+|....+|-++.+||+.+++++. +++-+|++|++|.+.++|||||+++
T Consensus 1064 --n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~-------tdLVNPR~iv~D~~rgnLYwtDWnRen 1134 (1289)
T KOG1214|consen 1064 --NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY-------TDLVNPRAIVVDPIRGNLYWTDWNREN 1134 (1289)
T ss_pred --cccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe-------ecccCcceEEeecccCceeeccccccC
Confidence 12345688999999999999999999999999999999999998 8999999999999999999999874
Q ss_pred CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 257 ~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
.+|++.+|||+++++++..++.-|.||.+||....|.|.|.| +.+++....+|..++++.+. |+.|.+|+-+ .+.+
T Consensus 1135 PkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAG-t~rleC~~p~g~gRR~i~~~-LqYPF~itsy--~~~f 1210 (1289)
T KOG1214|consen 1135 PKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAG-TKRLECTLPDGTGRRVIQNN-LQYPFSITSY--ADHF 1210 (1289)
T ss_pred CcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecC-CcceeEecCCCCcchhhhhc-ccCceeeeec--cccc
Confidence 699999999999999999999999999999999999999998 79999999999999998876 9999999986 4569
Q ss_pred EEEEeCCCCeEEEEEccCCceEEE
Q psy5792 337 YWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 337 Yw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
||+|+ +.+.|.++++.++.-+..
T Consensus 1211 Y~TDW-k~n~vvsv~~~~~~~td~ 1233 (1289)
T KOG1214|consen 1211 YHTDW-KRNGVVSVNKHSGQFTDE 1233 (1289)
T ss_pred eeecc-ccCceEEeeccccccccc
Confidence 99999 999999999987754433
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=8.6e-21 Score=203.45 Aligned_cols=269 Identities=14% Similarity=0.163 Sum_probs=195.6
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC------------CCCCceEEEEEE--CCeEEEEcCCCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM------------PDAAQVVAAVFY--KGRIIYSDANDG 79 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~------------~~~~~p~~lav~--~~~ly~td~~~~ 79 (377)
+..|.|+++|..+++||++|+..++|.+++++|. ..++... ..+..|.||++. ++.|||+|..++
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 5899999999999999999999999999999999 6666421 124679999994 567999999999
Q ss_pred ceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC
Q psy5792 80 NIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG 159 (377)
Q Consensus 80 ~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~ 159 (377)
.|++++..+...+++... +
T Consensus 647 ~Ir~id~~~~~V~tlag~-G------------------------------------------------------------ 665 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGN-G------------------------------------------------------------ 665 (1057)
T ss_pred eEEEEecCCCEEEEEecc-C------------------------------------------------------------
Confidence 999999544344333210 0
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc-------CCCC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET-------GDPT 232 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~-------~~~~ 232 (377)
....+..+... .....+..|.++++|+.++.||++|..+++|++++..+.....+...... ....
T Consensus 666 --~~g~~~~gg~~------~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~ 737 (1057)
T PLN02919 666 --TKGSDYQGGKK------GTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTST 737 (1057)
T ss_pred --cccCCCCCChh------hhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccc
Confidence 00001111100 00012456889999998899999999999999999865443333210000 0012
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee---------------------CCCCCceeEEEcCCCCe
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS---------------------GGVDQPSALAVDPESGY 291 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~---------------------~~~~~P~~iavdp~~g~ 291 (377)
.+..|.||++++.++.||++|..+++|.+.++++.....+.. ..+..|.++++|+ +|.
T Consensus 738 ~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~ 816 (1057)
T PLN02919 738 SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQ 816 (1057)
T ss_pred cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCc
Confidence 356799999998778899999999999999998644332221 1255799999997 678
Q ss_pred EEEEecCCCCeEEEEecCCCCeEEEEec-------------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 292 LFWSESGKIPLIARAGLDGKKQTILAQE-------------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 292 lywtd~g~~~~I~r~~ldG~~~~~l~~~-------------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
||++|++ +++|.+.+.++.....+... .+..|.||++|. +++||++|. .+++|..++++.+.
T Consensus 817 LYVADs~-N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt-~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 817 IYVADSY-NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADT-NNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEEECC-CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEEC-CCCEEEEEECCCCc
Confidence 9999986 79999999987665554432 256899999995 678999999 99999999998653
No 5
>KOG1215|consensus
Probab=99.84 E-value=2.4e-19 Score=191.32 Aligned_cols=304 Identities=19% Similarity=0.253 Sum_probs=235.9
Q ss_pred CceeEeeccccCCC------------------CcCCccccccCCCCeEEEEeCCCC-cEEEEEcCCc-EEEEEeCCCCCc
Q psy5792 1 MGYLHVLPYTRNPS------------------FGAVASTLKPQSGPFVYGVKTLSH-SLHYVNIEVK-VAKVVSMPDAAQ 60 (377)
Q Consensus 1 ~~~~~~~~~~~~~~------------------~~~~~~~~~d~~~~~ly~~d~~~~-~I~~~~~dG~-~~~i~~~~~~~~ 60 (377)
.|++||.+|-..|- +..|+|+++|..+.++||+|.... .|.+++.+|+ ++ +.....+.+
T Consensus 534 ~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~~~~~~~ 612 (877)
T KOG1215|consen 534 KGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVDSEDLPH 612 (877)
T ss_pred cCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-EeccccCCC
Confidence 48899999987442 258999999999999999999998 8999999999 76 333478899
Q ss_pred eEEEEEECCeEEEEcCCCCceEEEc-CCCCc-eEEEecCCCceeEEee-ecCCCCcccCCC-cCCCCCCceeccccCCCc
Q psy5792 61 VVAAVFYKGRIIYSDANDGNIRSIN-LDGSN-STVLRNNAGISDFILF-SVNSGYDIMGIK-YNKNESKVQQVLGPLSKV 136 (377)
Q Consensus 61 p~~lav~~~~ly~td~~~~~I~~~~-~~g~~-~~~~~~~~~p~~i~v~-~~~~~~~~~~~~-C~~~~g~Cs~~C~~~~~~ 136 (377)
|++++++++++||+|+..+.+.+.. ..+.. +.+......+..+..+ +...+ +.+.| |..++++|+|+|++.|..
T Consensus 613 p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~n~C~~~n~~c~~KOG~~p~~ 690 (877)
T KOG1215|consen 613 PFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR--PTGVNPCESSNGGCSQLCLPRPQG 690 (877)
T ss_pred ceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC--CCCCCcccccCCCCCeeeecCCCC
Confidence 9999999999999999999888887 55544 2233222237777666 44444 35888 999999999999999987
Q ss_pred cc---cCCcC------CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC
Q psy5792 137 SL---AAKVD------FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG 207 (377)
Q Consensus 137 ~~---~~G~~------~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~ 207 (377)
.. +.|+. +|.....++.++.... +..+..+.... .....+.. +...+..+|++...+
T Consensus 691 ~~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~~~ 756 (877)
T KOG1215|consen 691 STCACPEGYRLSPDGKSCSSPEGYLLITSRTG--IPCISLDSELS--PDQPLEDG----------DTIDRLEYWTDVRVG 756 (877)
T ss_pred CeeeCCCCCeecCCCCeecCcccccccccccc--cceeecCcccC--CCcccCCC----------cccccceecccccce
Confidence 54 77876 7888778888888887 88888776543 11111111 566889999987777
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC------eEEEEeeCCCCCce
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ------YRYVLISGGVDQPS 281 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~------~~~~l~~~~~~~P~ 281 (377)
...+...++.....++. .....+.++++++..+.|||+....+.|.+..+++. ....+.......|+
T Consensus 757 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (877)
T KOG1215|consen 757 VAAVSSQNCAPGYDLVG-------EGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPR 829 (877)
T ss_pred eeEEEecCCCCcccccc-------ccCCCCCCceeehhhcceEEEeecccEEEEEEEeeecccccccccccccCCCCCCc
Confidence 66666666544333444 567789999999999999999999999999988884 12233334577899
Q ss_pred eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE
Q psy5792 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 282 ~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla 328 (377)
.+.+.|....++|+++...+.|.+..++++....++...+..|.+++
T Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (877)
T KOG1215|consen 830 TTGVEPEKSLLFWTNWEPGPKIPRSALDGSERLVLFKSLLSCPNALA 876 (877)
T ss_pred ceeeccccceeccCCccccceeeecccccccccceeccCCCCccCCC
Confidence 99999999999999974468999999999999888887778888776
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.76 E-value=1.8e-15 Score=138.06 Aligned_cols=222 Identities=20% Similarity=0.231 Sum_probs=163.8
Q ss_pred eEEEEEE--CCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 61 VVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 61 p~~lav~--~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
|.|.++. ++.|||+|...+.|.+++.++....++... .|.|+++..++.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~~~G~~~~~~~g---------------------------- 52 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-GPNGMAFDRPDG---------------------------- 52 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-SEEEEEEECTTS----------------------------
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-CCceEEEEccCC----------------------------
Confidence 5678885 799999999999999999666555554322 288887753432
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC----CCCceEEEEEECCCCEEEEEEcCC--------
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS----KVSLAAKVDFHAAEDYIYWVDIDH-------- 206 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~----~~~~~~~l~~d~~~~~ly~sd~~~-------- 206 (377)
.+++++... +..++...... ..+.... ....|-.+++|+ ++.||+++...
T Consensus 53 ------------~l~v~~~~~--~~~~d~~~g~~---~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 53 ------------RLYVADSGG--IAVVDPDTGKV---TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp ------------EEEEEETTC--EEEEETTTTEE---EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGS
T ss_pred ------------EEEEEEcCc--eEEEecCCCcE---EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccc
Confidence 478888777 77777665533 2333321 456789999999 57799998754
Q ss_pred CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC--C---eEEEEeeCCC--CC
Q psy5792 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG--Q---YRYVLISGGV--DQ 279 (377)
Q Consensus 207 ~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g--~---~~~~l~~~~~--~~ 279 (377)
++|++++.+| ..+.+.. ++..|.||++++.++.||++|...++|.+++++. . .++++..... ..
T Consensus 115 g~v~~~~~~~-~~~~~~~--------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (246)
T PF08450_consen 115 GSVYRIDPDG-KVTVVAD--------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY 185 (246)
T ss_dssp EEEEEEETTS-EEEEEEE--------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE
T ss_pred cceEEECCCC-eEEEEec--------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC
Confidence 5799999994 3444443 6888999999998889999999999999999963 2 2445544322 25
Q ss_pred ceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe-CCCCEEEEEEe
Q psy5792 280 PSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD-RKNKRVYWCYS 341 (377)
Q Consensus 280 P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD-~~~~~LYw~d~ 341 (377)
|.|+++|. .|.||++.++ ..+|.+.+.+|+-...+... ..+|+.+++- ...++||++.+
T Consensus 186 pDG~~vD~-~G~l~va~~~-~~~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 186 PDGLAVDS-DGNLWVADWG-GGRIVVFDPDGKLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEBT-TS-EEEEEET-TTEEEEEETTSCEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCcceEcC-CCCEEEEEcC-CCEEEEECCCccEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 99999997 8999999996 79999999998876666554 5799999993 45689999865
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=8.3e-16 Score=165.29 Aligned_cols=231 Identities=13% Similarity=0.180 Sum_probs=166.5
Q ss_pred CCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 56 PDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 56 ~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
+.+..|.++++ .++.||++|..+++|++++.+|+....+... ++.|
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~-g~~G------------------------------- 612 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST-GEEG------------------------------- 612 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC-CCcC-------------------------------
Confidence 45678889999 4689999999999999999877654333210 0000
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTH 213 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~ 213 (377)
. .+|. .....+..|.++++|..++.||++|..++.|++++
T Consensus 613 -------------------------------~-~dG~--------~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 613 -------------------------------L-RDGS--------FEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred -------------------------------C-CCCc--------hhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 0 0111 00123567999999998889999999999999999
Q ss_pred cCCCCcEEEEecccc-----C----CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee----------
Q psy5792 214 RDGTGRENIIEYVET-----G----DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS---------- 274 (377)
Q Consensus 214 ~~G~~~~~i~~~~~~-----~----~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~---------- 274 (377)
+.+...+++...... . ....+..|.++++|+.+++||++|..+++|.+.+.......++..
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~ 732 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGS 732 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCC
Confidence 876555555321000 0 001256799999998889999999999999999987655443321
Q ss_pred ----CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe---------------------cCCCCceEEEE
Q psy5792 275 ----GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ---------------------EIIMPIKDITL 329 (377)
Q Consensus 275 ----~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~---------------------~~~~~P~glal 329 (377)
..+..|.+|+++|..+.||++|.+ +++|.+.++++...+.+.. ..+..|.|+++
T Consensus 733 ~~~~~~~~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 733 SGTSTSFAQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccccccccCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 125789999999988889999986 7899999987554443321 01567999999
Q ss_pred eCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 330 DRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|. ++.||++|. .+++|..++.+++...++.
T Consensus 812 d~-dG~LYVADs-~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 812 AK-DGQIYVADS-YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred eC-CCcEEEEEC-CCCEEEEEECCCCeEEEEe
Confidence 95 577999999 9999999999876555443
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.72 E-value=1.4e-14 Score=132.13 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=158.1
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
|.|.+.|..++.|||+|...++|+++++++. .+.+. ...|.|+++. ++.+|+++.. .+..++ .+|+...+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~----~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID----LPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE----SSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe----cCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE
Confidence 5688889888999999999999999999999 65553 2339999995 8899999874 455558 55654444
Q ss_pred Eec-----CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--------
Q psy5792 94 LRN-----NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG-------- 159 (377)
Q Consensus 94 ~~~-----~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~-------- 159 (377)
+.. ... |.++++... ..+++++...
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~-----------------------------------------G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPD-----------------------------------------GNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TT-----------------------------------------S-EEEEEECCBCTTCGGS
T ss_pred eeccCCCcccCCCceEEEcCC-----------------------------------------CCEEEEecCCCccccccc
Confidence 332 112 666665222 1255554321
Q ss_pred CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-----cEEEEeccccCCCCCC
Q psy5792 160 YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-----RENIIEYVETGDPTPV 234 (377)
Q Consensus 160 ~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-----~~~i~~~~~~~~~~~~ 234 (377)
|.|.+++.++. .......+..|-||++++.++.||++|...++|++++++... ++++... ....
T Consensus 115 g~v~~~~~~~~------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~ 183 (246)
T PF08450_consen 115 GSVYRIDPDGK------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDF-----PGGP 183 (246)
T ss_dssp EEEEEEETTSE------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE------SSSS
T ss_pred cceEEECCCCe------EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEc-----CCCC
Confidence 45888888732 122235677899999999999999999999999999997322 3444330 0122
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEE-cCCCCeEEEEec
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV-DPESGYLFWSES 297 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav-dp~~g~lywtd~ 297 (377)
+.|.||++|. .++||+++...++|.+++++|+....+-. ...+|..+++ -+..+.||+|..
T Consensus 184 g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 184 GYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIEL-PVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp CEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE--SSSSEEEEEEESTTSSEEEEEEB
T ss_pred cCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcC-CCCCEEEEEEECCCCCEEEEEeC
Confidence 3599999995 88999999999999999999987665544 3679999999 466799999963
No 9
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=2.7e-12 Score=123.09 Aligned_cols=286 Identities=15% Similarity=0.186 Sum_probs=183.7
Q ss_pred CcEEEEEc--CCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC---CCceEEEc--CCCCceEEEec---CCC-ceeE
Q psy5792 38 HSLHYVNI--EVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN---DGNIRSIN--LDGSNSTVLRN---NAG-ISDF 103 (377)
Q Consensus 38 ~~I~~~~~--dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~---~~~I~~~~--~~g~~~~~~~~---~~~-p~~i 103 (377)
+.|+.+.+ +.. .+.+........|.-|++ .+++||.++.. .+.|..+. .+....+.+.. ... |+.+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 45555555 222 333221145778888999 88899999884 57777776 33122332221 111 5555
Q ss_pred EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE--EE--
Q psy5792 104 ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV--LG-- 179 (377)
Q Consensus 104 ~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~--~~-- 179 (377)
.+ +++ ..+|++++...|.+..++++..+. +... +.
T Consensus 93 ~~-~~~---------------------------------------g~~l~vany~~g~v~v~~l~~~g~-l~~~~~~~~~ 131 (345)
T PF10282_consen 93 AV-DPD---------------------------------------GRFLYVANYGGGSVSVFPLDDDGS-LGEVVQTVRH 131 (345)
T ss_dssp EE-CTT---------------------------------------SSEEEEEETTTTEEEEEEECTTSE-EEEEEEEEES
T ss_pred EE-ecC---------------------------------------CCEEEEEEccCCeEEEEEccCCcc-cceeeeeccc
Confidence 44 222 136899998888899988876432 0111 11
Q ss_pred ----e---cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 180 ----P---LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 180 ----~---~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
| -....+|+.+.+++.+++||++|...++|+.++++... ...... . ....-..|+.|++++..+.+|
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~-~---~~~~G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS-I---KVPPGSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE-E---ECSTTSSEEEEEE-TTSSEEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec-c---ccccCCCCcEEEEcCCcCEEE
Confidence 1 12456799999999999999999999999999997543 211111 0 002334699999999889999
Q ss_pred EEcCCCCEEEEEEcC--CCeEEEE--eeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-CeEEE---
Q psy5792 251 WSDPKENVIEVARLT--GQYRYVL--ISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQTIL--- 316 (377)
Q Consensus 251 wtd~~~~~I~~~~~~--g~~~~~l--~~~------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~~~l--- 316 (377)
+++...++|.+++++ ....+.+ +.. ....|.+|+++|...+||+++.+ ...|....+|.. +....
T Consensus 208 v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 208 VVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEE
T ss_pred EecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEE
Confidence 999999999999988 2222111 111 12379999999999999999987 678888888543 22222
Q ss_pred EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc--CCceEEEEecCCCCCcc
Q psy5792 317 AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS--GGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 317 ~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~--G~~~~~~~~~~~~~~p~ 370 (377)
+...-..|.++++|+.+++||++.. ..+.|..++++ .+..+.+......+.|-
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~-~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQ-DSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEec-CCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 2222457999999999999999999 99999888775 34334343334566664
No 10
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=3.7e-12 Score=121.29 Aligned_cols=277 Identities=10% Similarity=0.084 Sum_probs=180.1
Q ss_pred CeEEEEeCCCCcEEEEEcC--CcEEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcC--CCCceEE--EecCCC
Q psy5792 28 PFVYGVKTLSHSLHYVNIE--VKVAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINL--DGSNSTV--LRNNAG 99 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~d--G~~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~--~g~~~~~--~~~~~~ 99 (377)
.++|++....+.|..++++ |+.+.+-.......|..|++ .+++||++....+.|..++. +|+...+ +.....
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4799999999999999985 44222211134567888888 56789999888888877763 3432111 111112
Q ss_pred ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEE
Q psy5792 100 ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLG 179 (377)
Q Consensus 100 p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~ 179 (377)
|.++.+ +++. .+++.+....+.|..++++..+.. ...+.
T Consensus 82 p~~i~~-~~~g---------------------------------------~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~ 120 (330)
T PRK11028 82 PTHIST-DHQG---------------------------------------RFLFSASYNANCVSVSPLDKDGIP-VAPIQ 120 (330)
T ss_pred ceEEEE-CCCC---------------------------------------CEEEEEEcCCCeEEEEEECCCCCC-CCcee
Confidence 555554 2322 257777655566888887632210 11122
Q ss_pred ecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE-----EEEeccccCCCCCCCCcceEEEeccCCeEEEEcC
Q psy5792 180 PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE-----NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254 (377)
Q Consensus 180 ~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~-----~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~ 254 (377)
.+.....|.++++++.++++|+++...++|..++++..... .... . ..-..|+++++++.++.+|.++.
T Consensus 121 ~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-----~-~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 121 IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-----T-VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-----c-CCCCCCceEEECCCCCEEEEEec
Confidence 22344568999999989999999999999999988642210 0011 0 11245999999998899999999
Q ss_pred CCCEEEEEEcCC--CeEEEEee-----C---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC--CCCeEEEEec-CC
Q psy5792 255 KENVIEVARLTG--QYRYVLIS-----G---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--GKKQTILAQE-II 321 (377)
Q Consensus 255 ~~~~I~~~~~~g--~~~~~l~~-----~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--G~~~~~l~~~-~~ 321 (377)
..++|.+.+++. ...+.+.. . +...|.+|+++|.+.+||.++.+ ...|...+++ +...+.+-.. .-
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-~~~I~v~~i~~~~~~~~~~~~~~~~ 273 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-ASLISVFSVSEDGSVLSFEGHQPTE 273 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-CCeEEEEEEeCCCCeEEEeEEEecc
Confidence 889999999863 12112111 1 11235579999999999999865 4677766664 3222222111 12
Q ss_pred CCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 322 MPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
..|.++++++.+++||.+.. ..++|..+.++
T Consensus 274 ~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~ 304 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID 304 (330)
T ss_pred ccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence 47999999999999999998 88888887765
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=4.9e-11 Score=114.34 Aligned_cols=287 Identities=15% Similarity=0.073 Sum_probs=180.6
Q ss_pred CcCCccccccCCCCeEEEEeC---CCCcEEEEEc--C-CcEEEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---LSHSLHYVNI--E-VKVAKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---~~~~I~~~~~--d-G~~~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~ 85 (377)
...|.-+++|+.+++||.+.. ..+.|..+.. + |+.+.+-. ......|-.|++ .+.+||+++...+.|..++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 468999999999999999988 4788887655 4 45333321 135778999999 7889999999999988877
Q ss_pred --CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 86 --LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 86 --~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
.+|........ ....|- -.++.+| .+.-.|.+..+|.+ .++++++.....|+
T Consensus 116 l~~~g~l~~~~~~-~~~~g~-g~~~~rq-----------~~~h~H~v~~~pdg-------------~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 116 LDDDGSLGEVVQT-VRHEGS-GPNPDRQ-----------EGPHPHQVVFSPDG-------------RFVYVPDLGADRVY 169 (345)
T ss_dssp ECTTSEEEEEEEE-EESEEE-ESSTTTT-----------SSTCEEEEEE-TTS-------------SEEEEEETTTTEEE
T ss_pred ccCCcccceeeee-cccCCC-CCccccc-----------ccccceeEEECCCC-------------CEEEEEecCCCEEE
Confidence 44544333210 000000 0122233 12222333333322 46888886666799
Q ss_pred EEEcCCCCceeeE-EEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEecc-ccCCCCCCCCcce
Q psy5792 164 GIKYNKNESKVTQ-VLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYV-ETGDPTPVDQFTD 239 (377)
Q Consensus 164 ~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~-~~~~~~~~~~p~~ 239 (377)
.++++....++.. ....+.....|..++|++.+.++|+++...+.|..++++ ....+.+.... ......+...|.+
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 9999766421111 223456667899999999999999999999999988887 22222221100 0001122236999
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCC---eEE-EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-CCeE
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQ---YRY-VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQT 314 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~---~~~-~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~~~~ 314 (377)
|++.+.++.||+++...+.|.+++++.. ... ..+......|++++++|.+.+||+++.. ...|....+|. ++..
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcE
Confidence 9999999999999999999999999542 221 2233456779999999999999999975 56777776653 2332
Q ss_pred EEEe--cCCCCceEEE
Q psy5792 315 ILAQ--EIIMPIKDIT 328 (377)
Q Consensus 315 ~l~~--~~~~~P~gla 328 (377)
.... ..+..|..|.
T Consensus 329 ~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIV 344 (345)
T ss_dssp EEEEEEEESSSEEEEE
T ss_pred EEecccccCCCCEEEe
Confidence 2222 2356666554
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.51 E-value=1.1e-10 Score=111.22 Aligned_cols=271 Identities=12% Similarity=0.061 Sum_probs=171.8
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcC--CcEEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc--CCC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE--VKVAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN--LDG 88 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d--G~~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~--~~g 88 (377)
.+.|..+++++.++.||++....+.|..++.+ |+.+.+-.......|.+|++ .+.+||.++...+.|..++ .+|
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 35799999999999999998888889877765 33332211133457899999 4668999998888888887 344
Q ss_pred CceEEEe---cCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 89 SNSTVLR---NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 89 ~~~~~~~---~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
...+.+. ....|.++.+ +++. .++++++...+.|..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~-~p~g---------------------------------------~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANI-DPDN---------------------------------------RTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCCceeeccCCCcccEeEe-CCCC---------------------------------------CEEEEeeCCCCEEEEE
Confidence 3322211 1112444433 3322 3677888776779999
Q ss_pred EcCCCCceee---EEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC--CCcEEEEeccccCCCC---CCCCc
Q psy5792 166 KYNKNESKVT---QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG--TGRENIIEYVETGDPT---PVDQF 237 (377)
Q Consensus 166 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G--~~~~~i~~~~~~~~~~---~~~~p 237 (377)
+++.... +. ...........|..+++++.++++|+++...+.|..++++. ...+.+... ...+. ....|
T Consensus 154 d~~~~g~-l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~ 230 (330)
T PRK11028 154 TLSDDGH-LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL--DMMPADFSDTRWA 230 (330)
T ss_pred EECCCCc-ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE--ecCCCcCCCCccc
Confidence 8865321 00 01112233456889999999999999998889998888862 122222210 00011 11235
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEEee-CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-Ce
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVLIS-GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQ 313 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l~~-~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~ 313 (377)
.+|++++.++.||.++...+.|.+++++ +...+.+-. .....|++++++|...+||.+..+ ...|....++.. +.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-SHHISVYEIDGETGL 309 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-CCcEEEEEEcCCCCc
Confidence 5799999888999999888899988874 332221111 113579999999999999999975 466666665532 11
Q ss_pred EEEEec--CCCCceEEEE
Q psy5792 314 TILAQE--IIMPIKDITL 329 (377)
Q Consensus 314 ~~l~~~--~~~~P~glal 329 (377)
...+.. .-..|.++++
T Consensus 310 l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 310 LTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEccccccCCCceEEEE
Confidence 112121 1357888876
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.43 E-value=8.8e-11 Score=113.48 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=148.1
Q ss_pred eccccCCCCcCCccccccCCCCeEEEEeCC-----------C-CcEEEEEc---CCc--EEEEEeCCCCCceEEEEEECC
Q psy5792 7 LPYTRNPSFGAVASTLKPQSGPFVYGVKTL-----------S-HSLHYVNI---EVK--VAKVVSMPDAAQVVAAVFYKG 69 (377)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~~~~~ly~~d~~-----------~-~~I~~~~~---dG~--~~~i~~~~~~~~p~~lav~~~ 69 (377)
.=|...|-+..|.++++|.. ++||+++.. . ++|.++.. ||. ..++++ ..+..|.||++..+
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAVG 82 (367)
T ss_pred EEEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEecC
Confidence 34567788999999999986 689999852 2 38888754 566 333432 67889999999655
Q ss_pred eEEEEcCCCCceEEEc-CCCC-----ceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcC
Q psy5792 70 RIIYSDANDGNIRSIN-LDGS-----NSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVD 143 (377)
Q Consensus 70 ~ly~td~~~~~I~~~~-~~g~-----~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~ 143 (377)
.||+++. ..|.++. .+|. .++++......
T Consensus 83 GlyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~------------------------------------------- 117 (367)
T TIGR02604 83 GVYVATP--PDILFLRDKDGDDKADGEREVLLSGFGG------------------------------------------- 117 (367)
T ss_pred CEEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCC-------------------------------------------
Confidence 5999974 4688884 5442 12222211100
Q ss_pred CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------------------
Q psy5792 144 FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI------------------- 204 (377)
Q Consensus 144 ~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~------------------- 204 (377)
... .....+.++++++ +++||+++.
T Consensus 118 ------------------------~~~-----------~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 118 ------------------------QIN-----------NHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred ------------------------CCC-----------cccccccCceECC-CCCEEEecccCCCceeccCCCccCcccc
Confidence 000 0000112222222 223333222
Q ss_pred CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC--C----------C-----
Q psy5792 205 DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT--G----------Q----- 267 (377)
Q Consensus 205 ~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~--g----------~----- 267 (377)
..+.|+|++++|+..+.+. .++..|.|+++|+ .++||++|.......++..- | .
T Consensus 162 ~~g~i~r~~pdg~~~e~~a--------~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~ 232 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVA--------HGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHA 232 (367)
T ss_pred cCceEEEEecCCCeEEEEe--------cCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccc
Confidence 2368999999988776665 4788899999997 78999998765433322211 0 0
Q ss_pred ------eE---------E-----EEeeCCCCCceeEEEc-------CCCCeEEEEecCCCCeEEEEecC--CCCe----E
Q psy5792 268 ------YR---------Y-----VLISGGVDQPSALAVD-------PESGYLFWSESGKIPLIARAGLD--GKKQ----T 314 (377)
Q Consensus 268 ------~~---------~-----~l~~~~~~~P~~iavd-------p~~g~lywtd~g~~~~I~r~~ld--G~~~----~ 314 (377)
.. . .........|.|+++- +..|.+|++++. ..+|.+..++ |... .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~-~~~v~~~~l~~~g~~~~~~~~ 311 (367)
T TIGR02604 233 DRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAH-GQLIVRYSLEPKGAGFKGERP 311 (367)
T ss_pred cccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeecc-CCEEEEEEeecCCCccEeecC
Confidence 00 0 0000112368999998 457899999995 6899999886 3211 1
Q ss_pred EEEec-C-CCCceEEEEeCCCCEEEEEEe
Q psy5792 315 ILAQE-I-IMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 315 ~l~~~-~-~~~P~glalD~~~~~LYw~d~ 341 (377)
.++.. . ...|..+++++ .+.||++|+
T Consensus 312 ~~l~~~~~~~rp~dv~~~p-DG~Lyv~d~ 339 (367)
T TIGR02604 312 EFLRSNDTWFRPVNVTVGP-DGALYVSDW 339 (367)
T ss_pred ceEecCCCcccccceeECC-CCCEEEEEe
Confidence 22332 1 35899999985 588999996
No 14
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.42 E-value=9.8e-09 Score=95.21 Aligned_cols=271 Identities=8% Similarity=0.002 Sum_probs=173.0
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCcee
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISD 102 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~ 102 (377)
+++|.+....+.|...|+++. ..++ .....|.++++ .+..+|.+....+.|..++ .+|+....+.....+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~---~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF---PVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE---ECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccE
Confidence 367888888999999998765 4444 33445788888 3446888888788899998 55554443332222333
Q ss_pred EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC
Q psy5792 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182 (377)
Q Consensus 103 i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~ 182 (377)
+.+ +++. ..++++....+.|+.+++..... +..+.
T Consensus 78 ~~~-~~~g---------------------------------------~~l~~~~~~~~~l~~~d~~~~~~-----~~~~~ 112 (300)
T TIGR03866 78 FAL-HPNG---------------------------------------KILYIANEDDNLVTVIDIETRKV-----LAEIP 112 (300)
T ss_pred EEE-CCCC---------------------------------------CEEEEEcCCCCeEEEEECCCCeE-----EeEee
Confidence 322 2221 24555554444688888765422 22222
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
....+.++++++.+..++.+......+..++.+......... .-..|..+++++.++.||++....++|...
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--------VDQRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--------cCCCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 223477889988777777666544455556665322211111 123588899998777888876667889999
Q ss_pred EcCCCeE-EEEeeC------CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE
Q psy5792 263 RLTGQYR-YVLISG------GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 263 ~~~g~~~-~~l~~~------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~ 335 (377)
++..... +.+-.. ....|.+++++|...++|++..+ ..+|...++........... -..|.++++.+.+++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-ANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKY 262 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-CCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCE
Confidence 9876533 222110 12357889999988888988653 46788887764333222222 256889999988899
Q ss_pred EEEEEeCCCCeEEEEEccCCce
Q psy5792 336 VYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
||.+.. ..+.|...+..++..
T Consensus 263 l~~~~~-~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 263 LLTTNG-VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEcC-CCCeEEEEECCCCcE
Confidence 998887 788999999987654
No 15
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.36 E-value=9.3e-10 Score=99.54 Aligned_cols=210 Identities=11% Similarity=0.137 Sum_probs=127.0
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcC--CCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINL--DGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~--~g~~~ 91 (377)
.-++|++.++++++||-+......|...+++|. .+++- ..+..++-||++ .++.+.+++-..+.+..++. +++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 359999999999999999999999999999999 77763 466889999999 55666677767777777762 11111
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
.. +. ..++.+....
T Consensus 101 ~~-------------------------------------------------------------~~-----~~~~~l~~~~ 114 (248)
T PF06977_consen 101 DR-------------------------------------------------------------AD-----VQKISLGFPN 114 (248)
T ss_dssp -E-------------------------------------------------------------EE-----EEEEE---S-
T ss_pred ch-------------------------------------------------------------hh-----ceEEeccccc
Confidence 00 00 2233332110
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEc--CCCCcEEEEeccccC-CCCCCCCcceEEEeccCC
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHR--DGTGRENIIEYVETG-DPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~--~G~~~~~i~~~~~~~-~~~~~~~p~~iavD~~~~ 247 (377)
.+.....|+++|+.++++|++... ...|+.++. .+........ .... ....+..|.+|++|+.++
T Consensus 115 ----------~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~S~l~~~p~t~ 183 (248)
T PF06977_consen 115 ----------KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QDLDDDKLFVRDLSGLSYDPRTG 183 (248)
T ss_dssp ------------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HHHH-HT--SS---EEEEETTTT
T ss_pred ----------CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc-cccccccceeccccceEEcCCCC
Confidence 122347899999999999998643 346777776 2222222211 0100 112345699999999999
Q ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEeeC--------CCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYRYVLISG--------GVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~~~l~~~--------~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
+||+......+|...+.+|+....+--. .+.+|.|||+|+ +|.||++.. ....+++
T Consensus 184 ~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE--pNlfy~f 247 (248)
T PF06977_consen 184 HLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE--PNLFYRF 247 (248)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET--TTEEEEE
T ss_pred eEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC--CceEEEe
Confidence 9999999999999999999876543221 367899999997 799999984 3444443
No 16
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.36 E-value=1.6e-08 Score=93.76 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=164.4
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
..|.++++++.+..+|.+....+.|...++++. ....+ .....|..+++ .++.+|.+....+.|..++ .+++..
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~ 108 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL--PSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL 108 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec--cCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE
Confidence 458899999988889999888899999998766 33322 23344666777 4557888887778899898 444333
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
..+.....|.++.+ +++. .+++++..+...+..++.....
T Consensus 109 ~~~~~~~~~~~~~~-~~dg---------------------------------------~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 109 AEIPVGVEPEGMAV-SPDG---------------------------------------KIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred eEeeCCCCcceEEE-CCCC---------------------------------------CEEEEEecCCCeEEEEeCCCCe
Confidence 33332222444443 2222 1344444332224455554332
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
. ... . .....+..+++++.++.||++....+.|..+++..... ..+... ..........|.++++++.++.+|
T Consensus 149 ~--~~~-~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 149 I--VDN-V--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred E--EEE-E--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-ccccccccCCccceEECCCCCEEE
Confidence 2 111 1 12235677888887888888766678888888864322 212110 000001122477899998788889
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
++....++|.+.+++.......+.. ...|.+++++|.+.+||.+.. ..+.|...+++......-+..+ ..|++|++-
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~ 299 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVAALKVIKSIKVG-RLPWGVVVR 299 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEEcC-CCCeEEEEECCCCcEEEEEEcc-cccceeEeC
Confidence 9887778899998875443222222 346899999998889988864 3578999998876643333433 789999973
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=4.5e-09 Score=102.04 Aligned_cols=266 Identities=14% Similarity=0.165 Sum_probs=181.9
Q ss_pred EEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEcCCCCceEE-EecCCC-ceeEEe
Q psy5792 31 YGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSINLDGSNSTV-LRNNAG-ISDFIL 105 (377)
Q Consensus 31 y~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~~~g~~~~~-~~~~~~-p~~i~v 105 (377)
|+...... +..++..+. ....+ .....|.++++ .+.++|+++.....+..++......+. ...... |.++.+
T Consensus 5 ~~~~~~~~-~~v~~~~~~~~~~~~--~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v 81 (381)
T COG3391 5 KVMNTGAD-VSVINTGTNKVTAAI--SLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAV 81 (381)
T ss_pred ccccCCCc-eEEEeecccEEEEEe--ecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceee
Confidence 44444433 666676666 44444 44558888888 677999999877767777633222222 122212 667666
Q ss_pred eecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCC
Q psy5792 106 FSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVS 185 (377)
Q Consensus 106 ~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~ 185 (377)
..... .+++...+.+.|..++...... +.......
T Consensus 82 ~~~~~----------------------------------------~vyv~~~~~~~v~vid~~~~~~-----~~~~~vG~ 116 (381)
T COG3391 82 NPAGN----------------------------------------KVYVTTGDSNTVSVIDTATNTV-----LGSIPVGL 116 (381)
T ss_pred CCCCC----------------------------------------eEEEecCCCCeEEEEcCcccce-----eeEeeecc
Confidence 44433 2555554434488888554422 12222223
Q ss_pred ceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
.|.++++++.++++|+++.. ++.|..++........... .+ ..|.++++|+.+..+|.++...++|.+.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-------vG-~~P~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-------VG-NTPTGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-------cC-CCcceEEECCCCCeEEEEecCCCeEEEEe
Confidence 79999999999999999994 6889888887432211121 11 25899999998888999999999999999
Q ss_pred cCCCeEEE-----EeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEEE--EecCCCCceEEEEeCCCCE
Q psy5792 264 LTGQYRYV-----LISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTIL--AQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 264 ~~g~~~~~-----l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~l--~~~~~~~P~glalD~~~~~ 335 (377)
..+..... .+. ....|.+++++|...++|+++.++ ...+.+.+......... ..... +|.++++++.+..
T Consensus 189 ~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~ 266 (381)
T COG3391 189 TSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA 266 (381)
T ss_pred CCCcceeccccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence 88775442 122 367899999999999999999752 15788888776554443 22335 8999999999999
Q ss_pred EEEEEeCCCCeEEEEEccCC
Q psy5792 336 VYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~~~G~ 355 (377)
+|.++. ..+.+..++....
T Consensus 267 ~yv~~~-~~~~V~vid~~~~ 285 (381)
T COG3391 267 AYVANS-QGGTVSVIDGATD 285 (381)
T ss_pred EEEEec-CCCeEEEEeCCCC
Confidence 999999 8899999888743
No 18
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=6.9e-09 Score=100.75 Aligned_cols=275 Identities=11% Similarity=0.056 Sum_probs=188.6
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~ 90 (377)
+..|.++++++.+..+|+++...+.+..++..-. ..... ......|.++++ .+.++|+++...+.|..++ ..-..
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 4589999999999999999998888888887733 44433 233378999999 6778999999999999999 33333
Q ss_pred eEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEEEcC
Q psy5792 91 STVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGIKYN 168 (377)
Q Consensus 91 ~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~~l~ 168 (377)
...+..+..|.++.+.... .++++++. ..+.+..++-.
T Consensus 109 ~~~~~vG~~P~~~~~~~~~----------------------------------------~~vYV~n~~~~~~~vsvid~~ 148 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDG----------------------------------------KYVYVANAGNGNNTVSVIDAA 148 (381)
T ss_pred eeEeeeccCCceEEECCCC----------------------------------------CEEEEEecccCCceEEEEeCC
Confidence 3333333347777763222 25777776 24457777665
Q ss_pred CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 169 KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.... ... . .....|.++++++.++++|.++...+.|..++.++..... -. ..........|.++++++.+.+
T Consensus 149 t~~~--~~~-~--~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~--~~~~~~~~~~P~~i~v~~~g~~ 220 (381)
T COG3391 149 TNKV--TAT-I--PVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS--VGSLVGVGTGPAGIAVDPDGNR 220 (381)
T ss_pred CCeE--EEE-E--ecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc--cccccccCCCCceEEECCCCCE
Confidence 5433 222 2 2223579999999999999999889999999977543321 10 0000123456999999998889
Q ss_pred EEEEcCCC--CEEEEEEcCCCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC---C
Q psy5792 249 IYWSDPKE--NVIEVARLTGQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI---I 321 (377)
Q Consensus 249 lYwtd~~~--~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~---~ 321 (377)
+|+++..+ +++.+.+......... ....+ .|.+++++|...++|+++.. ...+..++............. .
T Consensus 221 ~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~-~~~V~vid~~~~~v~~~~~~~~~~~ 298 (381)
T COG3391 221 VYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ-GGTVSVIDGATDRVVKTGPTGNEAL 298 (381)
T ss_pred EEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC-CCeEEEEeCCCCceeeeeccccccc
Confidence 99999987 6898888887654433 22345 89999999999999999864 577777776665554443331 2
Q ss_pred CCceEEEEeCCCCEEEEEE
Q psy5792 322 MPIKDITLDRKNKRVYWCY 340 (377)
Q Consensus 322 ~~P~glalD~~~~~LYw~d 340 (377)
..|..+++-......|...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ 317 (381)
T COG3391 299 GEPVSIAISPLYDTNYVSV 317 (381)
T ss_pred ccceeccceeeccccccee
Confidence 2366676654444444433
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=1.8e-09 Score=100.91 Aligned_cols=218 Identities=18% Similarity=0.250 Sum_probs=142.1
Q ss_pred ECCeEEEEcCCCCceEEEcC-CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 67 YKGRIIYSDANDGNIRSINL-DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~~-~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
.++.|||+|...++|++.+. +|+. +++..... +.+..+ +..
T Consensus 35 ~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~-d~~----------------------------------- 77 (307)
T COG3386 35 DRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALI-DAG----------------------------------- 77 (307)
T ss_pred CCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceee-cCC-----------------------------------
Confidence 56679999999999999995 4544 33332212 222221 111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec---CCCCceEEEEEECCCCEEEEEEcC-----------CCcEE
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL---SKVSLAAKVDFHAAEDYIYWVDID-----------HGTIS 210 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~---~~~~~~~~l~~d~~~~~ly~sd~~-----------~~~I~ 210 (377)
-.+++..+. ++.++.+.... ...+... ....++-...+|+ .+.+|+++.. .++++
T Consensus 78 ------g~Lv~~~~g--~~~~~~~~~~~--~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~ly 146 (307)
T COG3386 78 ------GRLIACEHG--VRLLDPDTGGK--ITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLY 146 (307)
T ss_pred ------CeEEEEccc--cEEEeccCCce--eEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEE
Confidence 144555555 66665532222 0111111 1234465667777 5899998876 24799
Q ss_pred EEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC---CC--eE--EEEeeCCCCCceeE
Q psy5792 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT---GQ--YR--YVLISGGVDQPSAL 283 (377)
Q Consensus 211 ~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~---g~--~~--~~l~~~~~~~P~~i 283 (377)
|++.+|.. +.++. ..+..|+|||+++.+..||++|...++|.+++++ |. .+ .+.....-..|-|+
T Consensus 147 r~~p~g~~-~~l~~-------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~ 218 (307)
T COG3386 147 RVDPDGGV-VRLLD-------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM 218 (307)
T ss_pred EEcCCCCE-EEeec-------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCce
Confidence 99986644 44444 4588899999999999999999999999999998 32 12 23333334679999
Q ss_pred EEcCCCCeEE-EEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC-CCCEEEEEEeCCC
Q psy5792 284 AVDPESGYLF-WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR-KNKRVYWCYSVGS 344 (377)
Q Consensus 284 avdp~~g~ly-wtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~-~~~~LYw~d~~~~ 344 (377)
++|. .|.|| .+.++ ..+|.+.+.+|.....+.-- ..+|..+++-- ..++||++.. ..
T Consensus 219 ~vDa-dG~lw~~a~~~-g~~v~~~~pdG~l~~~i~lP-~~~~t~~~FgG~~~~~L~iTs~-~~ 277 (307)
T COG3386 219 AVDA-DGNLWVAAVWG-GGRVVRFNPDGKLLGEIKLP-VKRPTNPAFGGPDLNTLYITSA-RS 277 (307)
T ss_pred EEeC-CCCEEEecccC-CceEEEECCCCcEEEEEECC-CCCCccceEeCCCcCEEEEEec-CC
Confidence 9995 88888 55553 46999999998766554443 35777777722 2489999987 54
No 20
>KOG4659|consensus
Probab=99.27 E-value=4.7e-10 Score=116.24 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=161.5
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+|..+|.-++ +-||+-|.+ .|+++..||+ .+.+-. ...-.|-+-||+ .++.||++|...++|+|+. ..++..
T Consensus 366 aPvala~a~D-GSl~VGDfN--yIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~ 442 (1899)
T KOG4659|consen 366 APVALAYAPD-GSLIVGDFN--YIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS 442 (1899)
T ss_pred ceeeEEEcCC-CcEEEccch--heeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcccc
Confidence 8888888875 578888764 6999999999 443321 133446677888 8999999999999999998 555432
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
+. +.+ + |.....+ |. + .++. .+++ .
T Consensus 443 ~~---N~e---v-vaG~Ge~-------Cl-----------p---------------~des----CGDG----------a- 467 (1899)
T KOG4659|consen 443 RN---NYE---V-VAGDGEV-------CL-----------P---------------ADES----CGDG----------A- 467 (1899)
T ss_pred cc---Cee---E-EeccCcC-------cc-----------c---------------cccc----cCcc----------h-
Confidence 11 100 0 0011111 21 1 0000 1111 1
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-C------------CCCCCCcc
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-D------------PTPVDQFT 238 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~------------~~~~~~p~ 238 (377)
+..-+.+-.|.|+++|. .+.||++|. ..|++++.+|-- .+++. ..+. . .-.+.+|.
T Consensus 468 ------lA~dA~L~~PkGIa~dk-~g~lYfaD~--t~IR~iD~~giI-stlig-~~~~~~~p~~C~~~~kl~~~~leWPT 536 (1899)
T KOG4659|consen 468 ------LAQDAQLIFPKGIAFDK-MGNLYFADG--TRIRVIDTTGII-STLIG-TTPDQHPPRTCAQITKLVDLQLEWPT 536 (1899)
T ss_pred ------hcccceeccCCceeEcc-CCcEEEecc--cEEEEeccCceE-EEecc-CCCCccCccccccccchhheeeeccc
Confidence 11112334588999997 899999985 478888877632 22211 0000 0 01256799
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEe-------------------eCCCCCceeEEEcCCCCeEEEEecCC
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLI-------------------SGGVDQPSALAVDPESGYLFWSESGK 299 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~-------------------~~~~~~P~~iavdp~~g~lywtd~g~ 299 (377)
.|||||..+.||+.|.+ -|.+++.++.-+..+- ...+..|++||+-+ .|.||+++..
T Consensus 537 ~LaV~Pmdnsl~Vld~n--vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~-~G~lyvaEsD- 612 (1899)
T KOG4659|consen 537 SLAVDPMDNSLLVLDTN--VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGT-DGALYVAESD- 612 (1899)
T ss_pred ceeecCCCCeEEEeecc--eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecC-CceEEEEecc-
Confidence 99999999999999874 4777776665441110 01256789999996 8999999863
Q ss_pred CCeEEEE---ecCCCCeEEEE------------------------e-cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 300 IPLIARA---GLDGKKQTILA------------------------Q-EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 300 ~~~I~r~---~ldG~~~~~l~------------------------~-~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
..+|.|+ ..||+ ...+. . ..+..|..||+. ..+.+|++|. ++-+|.++.
T Consensus 613 ~rriNrvr~~~tdg~-i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVs-Pdg~v~IAD~-gN~rIr~Vs 689 (1899)
T KOG4659|consen 613 GRRINRVRKLSTDGT-ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVS-PDGDVIIADS-GNSRIRKVS 689 (1899)
T ss_pred chhhhheEEeccCce-EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEEC-CCCcEEEecC-Cchhhhhhh
Confidence 4555544 44542 11111 0 026779999997 5789999999 777776654
No 21
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.7e-07 Score=86.44 Aligned_cols=293 Identities=14% Similarity=0.177 Sum_probs=181.7
Q ss_pred eEEEEeCC---CCcEEEEEcCCc-----EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcC---CCCceEE
Q psy5792 29 FVYGVKTL---SHSLHYVNIEVK-----VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINL---DGSNSTV 93 (377)
Q Consensus 29 ~ly~~d~~---~~~I~~~~~dG~-----~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~---~g~~~~~ 93 (377)
.+|+.... ++.|+++++|+. ...++ .....|.=|++ .+.+||..... .+.|..+.. +|. .+.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v--~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-Lt~ 80 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLV--AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-LTF 80 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhc--cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-EEE
Confidence 56666555 788999988854 22222 56778888888 45569998766 566665542 242 222
Q ss_pred EecCC----CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 94 LRNNA----GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 94 ~~~~~----~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
+.... .|+-+.+ +++ ..+++.++-+.|+|....+..
T Consensus 81 ln~~~~~g~~p~yvsv-d~~---------------------------------------g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 81 LNRQTLPGSPPCYVSV-DED---------------------------------------GRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred eeccccCCCCCeEEEE-CCC---------------------------------------CCEEEEEEccCceEEEEEccc
Confidence 22111 1233333 111 137899998888899988843
Q ss_pred CCc--eeeEEEEecC-------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceE
Q psy5792 170 NES--KVTQVLGPLS-------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 170 ~~~--~~~~~~~~~~-------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
.+. ...+.+.... ..+++....+++.+++|+..|....+|+..+++-...+.... .....-..|+-|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~----~~v~~G~GPRHi 196 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP----AEVKPGAGPRHI 196 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc----cccCCCCCcceE
Confidence 222 1011111111 123477888899899999999999999988886222111111 000233469999
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEcCCC---eE--EEEee--C---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARLTGQ---YR--YVLIS--G---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD- 309 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~~g~---~~--~~l~~--~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld- 309 (377)
++.+..+..|....-+++|.+...+.. .. +++.. . +-..-.+|.|.+...+||.++.+. ..|..+..+
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~ 275 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH-DSIAVFSVDP 275 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC-CeEEEEEEcC
Confidence 999999999999999999999988863 21 12211 1 234557899999999999999984 466555544
Q ss_pred -CCCeEEEE--ecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc--CCceEEEEecCCCCCcc
Q psy5792 310 -GKKQTILA--QEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS--GGSKMQLKLSSNIKNAL 370 (377)
Q Consensus 310 -G~~~~~l~--~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~--G~~~~~~~~~~~~~~p~ 370 (377)
|..-..+. ...-+.|.++.+++.++.|+.+.. .++.|.....+ .+....+......+.|.
T Consensus 276 ~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q-~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pv 340 (346)
T COG2706 276 DGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ-KSDNITVFERDKETGRLTLLGRYAVVPEPV 340 (346)
T ss_pred CCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc-CCCcEEEEEEcCCCceEEecccccCCCCcE
Confidence 44322221 123456999999999999999988 77655555544 33333332223455553
No 22
>KOG4659|consensus
Probab=99.21 E-value=2.1e-09 Score=111.58 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=140.3
Q ss_pred CCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEc-CCC----CcEEE
Q psy5792 148 ISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR-DGT----GRENI 222 (377)
Q Consensus 148 ~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~-~G~----~~~~i 222 (377)
++..|++.+-+- ||||..+|.-. +-..+.++..++-.-+|+++.++.||++|..+.+|+|++- .+. +.+++
T Consensus 374 ~DGSl~VGDfNy--IRRI~~dg~v~--tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv 449 (1899)
T KOG4659|consen 374 PDGSLIVGDFNY--IRRISQDGQVS--TILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV 449 (1899)
T ss_pred CCCcEEEccchh--eeeecCCCceE--EEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence 455788888777 99999988755 3233334577888999999999999999999999999763 221 23444
Q ss_pred Eecccc-------------CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee---------------
Q psy5792 223 IEYVET-------------GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS--------------- 274 (377)
Q Consensus 223 ~~~~~~-------------~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~--------------- 274 (377)
+...+. .....+..|.|||+| ..++||++|.. +|.+.+-+|-..+.+-.
T Consensus 450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~k 526 (1899)
T KOG4659|consen 450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITK 526 (1899)
T ss_pred eccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccc
Confidence 321111 011235569999999 68999999986 58888888754433221
Q ss_pred ---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeE-------------------EEEecCCCCceEEEEeCC
Q psy5792 275 ---GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQT-------------------ILAQEIIMPIKDITLDRK 332 (377)
Q Consensus 275 ---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~-------------------~l~~~~~~~P~glalD~~ 332 (377)
-.+..|..+||||..+-||+-|. +-|.|+.-++..+- ......+..|..||+- .
T Consensus 527 l~~~~leWPT~LaV~Pmdnsl~Vld~---nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~ 602 (1899)
T KOG4659|consen 527 LVDLQLEWPTSLAVDPMDNSLLVLDT---NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-T 602 (1899)
T ss_pred hhheeeecccceeecCCCCeEEEeec---ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-C
Confidence 13789999999999999999984 46666665543321 1111114457899996 5
Q ss_pred CCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 333 NKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 333 ~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
.+-||++++ ...+|.++..-+++.+
T Consensus 603 ~G~lyvaEs-D~rriNrvr~~~tdg~ 627 (1899)
T KOG4659|consen 603 DGALYVAES-DGRRINRVRKLSTDGT 627 (1899)
T ss_pred CceEEEEec-cchhhhheEEeccCce
Confidence 799999999 8888888776666554
No 23
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.21 E-value=2.3e-08 Score=89.03 Aligned_cols=278 Identities=14% Similarity=0.133 Sum_probs=193.3
Q ss_pred CCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCC
Q psy5792 13 PSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGS 89 (377)
Q Consensus 13 ~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~ 89 (377)
|...+|..++.+++ +.+++++..++.|-+.|.... .+++ ......+|++|.+ -++..+++|... .|.|++ .+++
T Consensus 59 p~G~ap~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~y-pLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 59 PNGSAPFDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETY-PLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCCCCccccccCCC-CceEEecCccccceecCCCCCceEEE-ecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc
Confidence 33678999999875 579999999999999999777 5555 2478889999999 777899999877 899999 4554
Q ss_pred ceEE-EecCCCceeE--EeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 90 NSTV-LRNNAGISDF--ILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 90 ~~~~-~~~~~~p~~i--~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
..+. +......-++ .|+++ ...|.|+...+ +.. .
T Consensus 136 vt~f~lp~~~a~~nlet~vfD~----------------------------------------~G~lWFt~q~G--~yG-r 172 (353)
T COG4257 136 VTRFPLPLEHADANLETAVFDP----------------------------------------WGNLWFTGQIG--AYG-R 172 (353)
T ss_pred eEEeecccccCCCcccceeeCC----------------------------------------CccEEEeeccc--cce-e
Confidence 4322 1100001111 12222 12355555443 333 3
Q ss_pred cCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcceEEEecc
Q psy5792 167 YNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTDIAVDWI 245 (377)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~iavD~~ 245 (377)
|++... .-.+++......|.||...+ ++.+|++....+.|-+++.-....+++.. ++.+ +..+.|-.|++
T Consensus 173 LdPa~~--~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~------P~~~~~gsRriwsdpi 243 (353)
T COG4257 173 LDPARN--VISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQ------PNALKAGSRRIWSDPI 243 (353)
T ss_pred cCcccC--ceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecC------CCcccccccccccCcc
Confidence 444432 22345555556789999888 78999999999999999886445555543 1332 34677888974
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P 324 (377)
++++.|+..+++++++++.-+. .+--+-+.-.+|.++-|| ..++++.+|++ .+.|.|.+-.-..-+++-.. -.++
T Consensus 244 -g~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~-agai~rfdpeta~ftv~p~p-r~n~ 319 (353)
T COG4257 244 -GRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEAD-AGAIGRFDPETARFTVLPIP-RPNS 319 (353)
T ss_pred -CcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccc-cCceeecCcccceEEEecCC-CCCC
Confidence 7899999999999999987653 333333446789999999 48999999986 68899988765555555543 3566
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
.-+.+|...+.|+.++. .-..+...
T Consensus 320 gn~ql~gr~ge~W~~e~-gvd~lv~~ 344 (353)
T COG4257 320 GNIQLDGRPGELWFTEA-GVDALVTT 344 (353)
T ss_pred CceeccCCCCceeeccc-CcceeEEE
Confidence 67999999999999998 66655443
No 24
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.19 E-value=1.5e-07 Score=89.36 Aligned_cols=245 Identities=8% Similarity=0.063 Sum_probs=147.2
Q ss_pred CcCCccccccCCCCeEEEEeC---------CCCcEEEEEcCCc--EEEEEeCC-----CCCceEEEEE--ECCeEEEEcC
Q psy5792 15 FGAVASTLKPQSGPFVYGVKT---------LSHSLHYVNIEVK--VAKVVSMP-----DAAQVVAAVF--YKGRIIYSDA 76 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~---------~~~~I~~~~~dG~--~~~i~~~~-----~~~~p~~lav--~~~~ly~td~ 76 (377)
...|+++ +.++++.||++.+ ..+.|..+|+... ...|...+ ....|..+++ .+.+||++++
T Consensus 46 G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 46 GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC
Confidence 4599996 9999999999999 8999999999877 55553211 1445557777 6668999998
Q ss_pred C-CCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEE
Q psy5792 77 N-DGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILF 154 (377)
Q Consensus 77 ~-~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~ 154 (377)
. ...+..+| ..++....+.- | .|.++....+.++ +++.
T Consensus 125 ~p~~~V~VvD~~~~kvv~ei~v---p------------------------~~~~vy~t~e~~~-------------~~~~ 164 (352)
T TIGR02658 125 SPSPAVGVVDLEGKAFVRMMDV---P------------------------DCYHIFPTANDTF-------------FMHC 164 (352)
T ss_pred CCCCEEEEEECCCCcEEEEEeC---C------------------------CCcEEEEecCCcc-------------EEEe
Confidence 8 78899999 66666554432 1 2333322222221 1222
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEEEecC------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEE--ecc
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVLGPLS------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENII--EYV 226 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~~~~~------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~--~~~ 226 (377)
.++. ...+.++..+.. ...-.++. -..+| .|...++..+|.... |.|+.+++.+....... .-.
T Consensus 165 ~Dg~---~~~v~~d~~g~~-~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~ 236 (352)
T TIGR02658 165 RDGS---LAKVGYGTKGNP-KIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF 236 (352)
T ss_pred ecCc---eEEEEecCCCce-EEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec
Confidence 2222 334333332210 00001110 12445 334435566666555 99999998664322211 100
Q ss_pred ccCCCCCCCCcce---EEEeccCCeEEEEc-CC--------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCC-eEE
Q psy5792 227 ETGDPTPVDQFTD---IAVDWIAQNIYWSD-PK--------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG-YLF 293 (377)
Q Consensus 227 ~~~~~~~~~~p~~---iavD~~~~~lYwtd-~~--------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g-~ly 293 (377)
.......--+|.| +|+++.+++||+.. .. .++|.+++.....+..-+.. ...|.+|++.|... +||
T Consensus 237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLY 315 (352)
T ss_pred cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEE
Confidence 0000001124555 99999999999953 22 26899999987765544444 45799999999989 999
Q ss_pred EEecCCCCeEEEEecCC
Q psy5792 294 WSESGKIPLIARAGLDG 310 (377)
Q Consensus 294 wtd~g~~~~I~r~~ldG 310 (377)
.++.. ...|..++...
T Consensus 316 vtn~~-s~~VsViD~~t 331 (352)
T TIGR02658 316 ALSTG-DKTLYIFDAET 331 (352)
T ss_pred EeCCC-CCcEEEEECcC
Confidence 99864 56677777543
No 25
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=6.8e-07 Score=84.93 Aligned_cols=271 Identities=10% Similarity=0.038 Sum_probs=154.1
Q ss_pred CCCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcC---------CCCceEEEc-CC
Q psy5792 26 SGPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDA---------NDGNIRSIN-LD 87 (377)
Q Consensus 26 ~~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~---------~~~~I~~~~-~~ 87 (377)
+..++|+.|.. .++|..+|.+.. ..++ +....|.++ + .+..||++.. .++.|..+| .+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i---~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t 86 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMT---DGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT 86 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEE---EccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc
Confidence 45689999998 499999999887 4555 455677776 6 6779999999 788899998 77
Q ss_pred CCceEEEecCCCce--------eEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-
Q psy5792 88 GSNSTVLRNNAGIS--------DFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS- 158 (377)
Q Consensus 88 g~~~~~~~~~~~p~--------~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~- 158 (377)
++....+.....|. .+.+ +++ ..+|++++-+
T Consensus 87 ~~~~~~i~~p~~p~~~~~~~~~~~~l-s~d---------------------------------------gk~l~V~n~~p 126 (352)
T TIGR02658 87 HLPIADIELPEGPRFLVGTYPWMTSL-TPD---------------------------------------NKTLLFYQFSP 126 (352)
T ss_pred CcEEeEEccCCCchhhccCccceEEE-CCC---------------------------------------CCEEEEecCCC
Confidence 76655554322232 2222 221 1357766644
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc--cCCCCCCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE--TGDPTPVDQ 236 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~--~~~~~~~~~ 236 (377)
...+..+++..... -...++.+ -...+........+.+. .++...+.++..+........- .....-+.+
T Consensus 127 ~~~V~VvD~~~~kv---v~ei~vp~--~~~vy~t~e~~~~~~~~---Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r 198 (352)
T TIGR02658 127 SPAVGVVDLEGKAF---VRMMDVPD--CYHIFPTANDTFFMHCR---DGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH 198 (352)
T ss_pred CCEEEEEECCCCcE---EEEEeCCC--CcEEEEecCCccEEEee---cCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence 44588888776533 11112211 11111111111122222 2333443333222111111000 000011245
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-----eeCC----CCCcee---EEEcCCCCeEEEEecC------
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-----ISGG----VDQPSA---LAVDPESGYLFWSESG------ 298 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-----~~~~----~~~P~~---iavdp~~g~lywtd~g------ 298 (377)
| ++-+..+..+|.... ++|.++++.+...... +... .-+|.| +++++.+++||++..+
T Consensus 199 P---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 199 P---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred C---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence 6 333323444444444 8999999877532221 1111 224655 9999999999995422
Q ss_pred --CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC-EEEEEEeCCCCeEEEEEccC
Q psy5792 299 --KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK-RVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 299 --~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~-~LYw~d~~~~~~i~~~~~~G 354 (377)
....|+.++.....+..-+.. -..|.+|++....+ +||.+.. ..+.|..+|...
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t 331 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALST-GDKTLYIFDAET 331 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcC
Confidence 125788888764443333332 25789999999889 9999998 889999999764
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.08 E-value=1.3e-07 Score=89.99 Aligned_cols=246 Identities=15% Similarity=0.139 Sum_probs=146.3
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC-----CCCCceEEEEEEC-----CeEEEEcCCC-----
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM-----PDAAQVVAAVFYK-----GRIIYSDAND----- 78 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~-----~~~~~p~~lav~~-----~~ly~td~~~----- 78 (377)
++.|.++++.+. ++||+++. .++|.+++.+|. ...+... .....+.||++.. ++||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 357999999987 79999988 999999998888 3554321 3456789999966 6777764321
Q ss_pred ---CceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 79 ---GNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 79 ---~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
.+|.|+..+...... . . ...+
T Consensus 79 ~~~~~v~r~~~~~~~~~~-~------~-----------------------------------------------~~~l-- 102 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDL-S------S-----------------------------------------------EEVL-- 102 (331)
T ss_dssp SEEEEEEEEEEETTSCEE-E------E-----------------------------------------------EEEE--
T ss_pred CcceeeEEEeccCCcccc-c------c-----------------------------------------------ceEE--
Confidence 123333211100000 0 0 0000
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-------------CCCcEEEEEcCCC-----
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-------------DHGTISRTHRDGT----- 217 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-------------~~~~I~~~~~~G~----- 217 (377)
+..+.... ........|+|++ +++||++-- ..++|.|++.+|+
T Consensus 103 ------~~~~p~~~------------~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dn 163 (331)
T PF07995_consen 103 ------VTGLPDTS------------SGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADN 163 (331)
T ss_dssp ------EEEEES-C------------SSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTS
T ss_pred ------EEEeCCCC------------CCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCC
Confidence 11111100 1222356688887 569998842 1368999999987
Q ss_pred --------CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EEEEEEcCCCe----E-------------
Q psy5792 218 --------GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VIEVARLTGQY----R------------- 269 (377)
Q Consensus 218 --------~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I~~~~~~g~~----~------------- 269 (377)
..++.. .++.+|.++++|+.++.||.+|.+.. .|.++...+.. +
T Consensus 164 P~~~~~~~~~~i~A--------~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~ 235 (331)
T PF07995_consen 164 PFVGDDGADSEIYA--------YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGD 235 (331)
T ss_dssp TTTTSTTSTTTEEE--------E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECT
T ss_pred ccccCCCceEEEEE--------eCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccc
Confidence 334444 48889999999998899999986543 45554432210 0
Q ss_pred ---------EEEeeCCCCCceeEEEcC------CCCeEEEEecCCCCeEEEEecCCCC----eEEEEecCCC-CceEEEE
Q psy5792 270 ---------YVLISGGVDQPSALAVDP------ESGYLFWSESGKIPLIARAGLDGKK----QTILAQEIIM-PIKDITL 329 (377)
Q Consensus 270 ---------~~l~~~~~~~P~~iavdp------~~g~lywtd~g~~~~I~r~~ldG~~----~~~l~~~~~~-~P~glal 329 (377)
..+.-..-..|.|+++-. ..|.+|+++++ ..+|++..++... .+.++. ++. .|.++++
T Consensus 236 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~-~~~~r~~~v~~ 313 (331)
T PF07995_consen 236 APSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG-GGRIWRLDLDEDGSVTEEEEFLG-GFGGRPRDVAQ 313 (331)
T ss_dssp GSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT-TTEEEEEEEETTEEEEEEEEECT-TSSS-EEEEEE
T ss_pred ccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCC-CCEEEEEeeecCCCccceEEccc-cCCCCceEEEE
Confidence 011111235688888862 37789999996 7899999987442 223332 344 7899999
Q ss_pred eCCCCEEEEEEeCCCCeEEE
Q psy5792 330 DRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 330 D~~~~~LYw~d~~~~~~i~~ 349 (377)
++ .+.||+++. ..++|+|
T Consensus 314 ~p-DG~Lyv~~d-~~G~iyR 331 (331)
T PF07995_consen 314 GP-DGALYVSDD-SDGKIYR 331 (331)
T ss_dssp ET-TSEEEEEE--TTTTEEE
T ss_pred cC-CCeEEEEEC-CCCeEeC
Confidence 95 699999999 8898875
No 27
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.05 E-value=8.1e-10 Score=71.41 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=38.2
Q ss_pred CeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeC
Q psy5792 290 GYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331 (377)
Q Consensus 290 g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~ 331 (377)
++|||||++..++|+++++||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 589999997434999999999999999999999999999984
No 28
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.8e-08 Score=92.93 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=112.2
Q ss_pred EEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
.+-.++...+.|||+|...++|.+.+......+++.. .-.-+.++.+| ..++|..++.....+.. -.|.
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~--------p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~ 96 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS--------PGGFSSGALID-AGGRLIACEHGVRLLDP--DTGG 96 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC--------CCCcccceeec-CCCeEEEEccccEEEec--cCCc
Confidence 3445677899999999999999999997444455443 23347788888 57888877776433333 2233
Q ss_pred eEEEEeeC----CCCCceeEEEcCCCCeEEEEecC-----C-----CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCC
Q psy5792 268 YRYVLISG----GVDQPSALAVDPESGYLFWSESG-----K-----IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 268 ~~~~l~~~----~~~~P~~iavdp~~g~lywtd~g-----~-----~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~ 333 (377)
.++.+... ....|+...+|| .|.+|+++.+ . .++++|++.+|...+ ++...+..||||++++.+
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCC
Confidence 32344332 367899999998 5999999866 1 347999988655444 444448999999999999
Q ss_pred CEEEEEEeCCCCeEEEEEcc
Q psy5792 334 KRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~ 353 (377)
+.||++|+ ..++|.+++++
T Consensus 175 ~tly~aDT-~~~~i~r~~~d 193 (307)
T COG3386 175 KTLYVADT-PANRIHRYDLD 193 (307)
T ss_pred CEEEEEeC-CCCeEEEEecC
Confidence 99999999 99999999998
No 29
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.98 E-value=2.2e-09 Score=69.41 Aligned_cols=41 Identities=39% Similarity=0.645 Sum_probs=39.1
Q ss_pred CeEEEEcCCCC-EEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 247 QNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 247 ~~lYwtd~~~~-~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
++|||||...+ +|++++++|+.+++++..++..|+|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999999999999999999999999999996
No 30
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.87 E-value=3e-05 Score=71.77 Aligned_cols=269 Identities=11% Similarity=0.080 Sum_probs=165.4
Q ss_pred cCCccccccCCCCeEEEEeCC--CCcEEEEEcCC---cEEEEE-eCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc--
Q psy5792 16 GAVASTLKPQSGPFVYGVKTL--SHSLHYVNIEV---KVAKVV-SMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-- 85 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG---~~~~i~-~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-- 85 (377)
+.|+=+++++...+||.+... .+.|..+..|. +.+.+- +......|--+++ .+..||.++...+.|.+..
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~ 119 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ 119 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcc
Confidence 589999999999999999876 78887765554 444332 1133455688888 5558999998888888877
Q ss_pred CCCCceEEEe---cCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 86 LDGSNSTVLR---NNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 86 ~~g~~~~~~~---~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
.+|....++. .... | + .+| ...+|- .-.-+ | ...+|++.+...-+
T Consensus 120 ~dG~l~~~v~~~~h~g~~p------~-~rQ---~~~h~H--------~a~~t-----P--------~~~~l~v~DLG~Dr 168 (346)
T COG2706 120 ADGSLQPVVQVVKHTGSGP------H-ERQ---ESPHVH--------SANFT-----P--------DGRYLVVPDLGTDR 168 (346)
T ss_pred cCCccccceeeeecCCCCC------C-ccc---cCCccc--------eeeeC-----C--------CCCEEEEeecCCce
Confidence 5575533322 1111 2 2 223 111110 00000 1 11356666644445
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC--CcEEEEeccccCCCCC---CCC
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT--GRENIIEYVETGDPTP---VDQ 236 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~--~~~~i~~~~~~~~~~~---~~~ 236 (377)
|..++++....+. .....+.....|.-|.|++..+..|....-+++|-....+.. ..+.+-. ....+++ -.+
T Consensus 169 i~~y~~~dg~L~~-~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~--i~tlP~dF~g~~~ 245 (346)
T COG2706 169 IFLYDLDDGKLTP-ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT--IDTLPEDFTGTNW 245 (346)
T ss_pred EEEEEcccCcccc-ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee--eccCccccCCCCc
Confidence 7777776333211 111122445669999999999999999998999988888763 2222211 0111222 334
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcC--CCeEEEE--eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCC-C
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLT--GQYRYVL--ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG-K 311 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~--g~~~~~l--~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~ 311 (377)
..+|.+.+.++.||.+|...+.|.++..+ |...+.+ ..+....||++.+++..++|+.+... ...|.....|. +
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~-sd~i~vf~~d~~T 324 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK-SDNITVFERDKET 324 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC-CCcEEEEEEcCCC
Confidence 66788999999999999998888776554 4443332 22456679999999999999999864 34466555554 3
Q ss_pred CeEEEEec
Q psy5792 312 KQTILAQE 319 (377)
Q Consensus 312 ~~~~l~~~ 319 (377)
++-.+...
T Consensus 325 G~L~~~~~ 332 (346)
T COG2706 325 GRLTLLGR 332 (346)
T ss_pred ceEEeccc
Confidence 34343333
No 31
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.86 E-value=2e-07 Score=90.13 Aligned_cols=153 Identities=21% Similarity=0.268 Sum_probs=109.5
Q ss_pred CCCceEEEEEECCCCEEEEEEc-----------CC-CcEEEEEc---CCCC-cEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDI-----------DH-GTISRTHR---DGTG-RENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~-----------~~-~~I~~~~~---~G~~-~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
.+.+|.+|++|. .++||+++. .. ++|.++.- ||.. ...++. +++..|.||++.. +
T Consensus 12 ~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-------~~l~~p~Gi~~~~-~ 82 (367)
T TIGR02604 12 LLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-------EELSMVTGLAVAV-G 82 (367)
T ss_pred ccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-------cCCCCccceeEec-C
Confidence 367899999998 688999974 22 38888765 3432 223444 5788999999984 4
Q ss_pred CeEEEEcCCCCEEEEE-EcCCC-----eEEEEeeC---C----CCCceeEEEcCCCCeEEEEecCC--------------
Q psy5792 247 QNIYWSDPKENVIEVA-RLTGQ-----YRYVLISG---G----VDQPSALAVDPESGYLFWSESGK-------------- 299 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~-~~~g~-----~~~~l~~~---~----~~~P~~iavdp~~g~lywtd~g~-------------- 299 (377)
+ ||+++.. +|.++ +.+|. .++++++. . ...|++++++| .|+||+++...
T Consensus 83 G-lyV~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 83 G-VYVATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred C-EEEeCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCc
Confidence 5 9999754 58776 44442 34455542 1 23388999998 78999987510
Q ss_pred ----CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 300 ----IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 300 ----~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
...|+|++.+|+..+++.. .+.+|+||++|. .++||++|. ......+++
T Consensus 159 ~~~~~g~i~r~~pdg~~~e~~a~-G~rnp~Gl~~d~-~G~l~~tdn-~~~~~~~i~ 211 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLRVVAH-GFQNPYGHSVDS-WGDVFFCDN-DDPPLCRVT 211 (367)
T ss_pred ccccCceEEEEecCCCeEEEEec-CcCCCccceECC-CCCEEEEcc-CCCceeEEc
Confidence 1469999999988776655 589999999996 689999998 666555554
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.83 E-value=2.2e-06 Score=77.68 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=112.0
Q ss_pred ecCCCC-ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 180 PLSKVS-LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 180 ~~~~~~-~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
++.+.. ++.|++|++.++.||...-..+.|+.++++|...+.+-- .+.+.++||++- -++.+..++...++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l-------~g~~D~EgI~y~-g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL-------DGFGDYEGITYL-GNGRYVLSEERDQR 87 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE--------SS-SSEEEEEE--STTEEEEEETTTTE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC-------CCCCCceeEEEE-CCCEEEEEEcCCCc
Confidence 445543 599999999999999888788999999999876666654 577889999996 34555667777888
Q ss_pred EEEEEcCC--Ce--EEE--EeeCC-----CCCceeEEEcCCCCeEEEEecCCCCeEEEEec--CCCCeEEEEec------
Q psy5792 259 IEVARLTG--QY--RYV--LISGG-----VDQPSALAVDPESGYLFWSESGKIPLIARAGL--DGKKQTILAQE------ 319 (377)
Q Consensus 259 I~~~~~~g--~~--~~~--l~~~~-----~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l--dG~~~~~l~~~------ 319 (377)
+..+..+. .. ... -+..+ -....|||.||.++.||.+......+|+..+. .+.........
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 98888843 21 111 11111 12368999999999999997654446888876 33332222221
Q ss_pred -CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEe
Q psy5792 320 -IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 320 -~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
.+..|.+|++|+.+++||+... .+++|..++.+|.-...+.+
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~-es~~l~~~d~~G~~~~~~~L 210 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSD-ESRLLLELDRQGRVVSSLSL 210 (248)
T ss_dssp --SS---EEEEETTTTEEEEEET-TTTEEEEE-TT--EEEEEE-
T ss_pred ceeccccceEEcCCCCeEEEEEC-CCCeEEEECCCCCEEEEEEe
Confidence 2567999999999999999999 99999999999765554444
No 33
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.81 E-value=3.6e-07 Score=87.02 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=107.1
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEec---cCCeEEEEcCC------
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDW---IAQNIYWSDPK------ 255 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~---~~~~lYwtd~~------ 255 (377)
++|.+|++.+ ++.||+++. .++|++++.+|.....+.... .....+.....+||+|+ .++.||++-..
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAER-SGRIWVVDKDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEET-TSCEEEEET-TTEEEEEETTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEeC-CCcEEEEeC-CceEEEEeCCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 5799999998 489999997 899999997776533333211 11112334588999998 35788887552
Q ss_pred --CCEEEEEEcCCC-----eEEEEeeC------CCCCceeEEEcCCCCeEEEEecC------------CCCeEEEEecCC
Q psy5792 256 --ENVIEVARLTGQ-----YRYVLISG------GVDQPSALAVDPESGYLFWSESG------------KIPLIARAGLDG 310 (377)
Q Consensus 256 --~~~I~~~~~~g~-----~~~~l~~~------~~~~P~~iavdp~~g~lywtd~g------------~~~~I~r~~ldG 310 (377)
..+|.+..++.. ..++++.. ....-.+|+++| .|+||++--. ...+|.|++.||
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 247888888654 23344432 234557899998 6799998411 146899999998
Q ss_pred C-------------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 311 K-------------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 311 ~-------------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
+ ...+ ....+.+|.++++|+.+++||.+|. +....+.+
T Consensus 158 ~~p~dnP~~~~~~~~~~i-~A~GlRN~~~~~~d~~tg~l~~~d~-G~~~~dei 208 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEI-YAYGLRNPFGLAFDPNTGRLWAADN-GPDGWDEI 208 (331)
T ss_dssp SB-TTSTTTTSTTSTTTE-EEE--SEEEEEEEETTTTEEEEEEE--SSSSEEE
T ss_pred cCCCCCccccCCCceEEE-EEeCCCccccEEEECCCCcEEEEcc-CCCCCcEE
Confidence 7 3444 4445999999999988899999998 66554444
No 34
>KOG1520|consensus
Probab=98.76 E-value=5.7e-08 Score=90.94 Aligned_cols=148 Identities=18% Similarity=0.266 Sum_probs=114.2
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC---------
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--------- 255 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--------- 255 (377)
++|.|++++..++.||++|. .-.++.++..|...+.+....++ ..+.-..++.||. ++.+||||..
T Consensus 115 GRPLGl~f~~~ggdL~VaDA-YlGL~~V~p~g~~a~~l~~~~~G---~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~ 189 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA-YLGLLKVGPEGGLAELLADEAEG---KPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFV 189 (376)
T ss_pred CCcceEEeccCCCeEEEEec-ceeeEEECCCCCcceeccccccC---eeeeecCceeEcC-CCeEEEeccccccchhheE
Confidence 57999999999999999995 45788888988765555541111 2233478999998 9999999975
Q ss_pred --------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe---EEEEecCCCCc
Q psy5792 256 --------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ---TILAQEIIMPI 324 (377)
Q Consensus 256 --------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~---~~l~~~~~~~P 324 (377)
.+|+++.++..+..++|++ ++.-|+|+|+.|...++-+++.. ..+|.|..+.|... .++++.--..|
T Consensus 190 ~a~l~g~~~GRl~~YD~~tK~~~VLld-~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~LPG~P 267 (376)
T KOG1520|consen 190 FAALEGDPTGRLFRYDPSTKVTKVLLD-GLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGLPGYP 267 (376)
T ss_pred EeeecCCCccceEEecCcccchhhhhh-cccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcCCCCC
Confidence 3567777776666667776 59999999999999999999975 78999999999766 66666446789
Q ss_pred eEEEEeCCCCEEEEEE
Q psy5792 325 KDITLDRKNKRVYWCY 340 (377)
Q Consensus 325 ~glalD~~~~~LYw~d 340 (377)
.-|..+ .++..+++-
T Consensus 268 DNIR~~-~~G~fWVal 282 (376)
T KOG1520|consen 268 DNIRRD-STGHFWVAL 282 (376)
T ss_pred cceeEC-CCCCEEEEE
Confidence 999998 556555543
No 35
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.75 E-value=7.2e-06 Score=76.39 Aligned_cols=202 Identities=15% Similarity=0.208 Sum_probs=126.8
Q ss_pred CccccccCCCCeEEEEeCCC------------CcEEEEEcCCc--EEEEE-eC---CCCCceEEEEEEC-------CeEE
Q psy5792 18 VASTLKPQSGPFVYGVKTLS------------HSLHYVNIEVK--VAKVV-SM---PDAAQVVAAVFYK-------GRII 72 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~------------~~I~~~~~dG~--~~~i~-~~---~~~~~p~~lav~~-------~~ly 72 (377)
+-++.+|. .++|+++|++. -+|..+|+... .+++. .. ........|++.. .++|
T Consensus 3 V~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 3 VQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred ccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 45678886 57999999873 47899999877 45443 11 1234567788844 5899
Q ss_pred EEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcE
Q psy5792 73 YSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDF 151 (377)
Q Consensus 73 ~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~ 151 (377)
+||.....|.+++ .+|+..+++.....+ .|. .
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~------~p~-----------------------------------------~ 114 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSP------DPD-----------------------------------------A 114 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTT------S-S-----------------------------------------S
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcce------ecc-----------------------------------------c
Confidence 9999999999999 888888877642221 000 0
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEEC---CCCEEEEEEcCCCcEEEEEcC----CCC------
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHA---AEDYIYWVDIDHGTISRTHRD----GTG------ 218 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~---~~~~ly~sd~~~~~I~~~~~~----G~~------ 218 (377)
..+..... . +.. .....|++..+ .++.|||.-..+.+++++... .+.
T Consensus 115 ~~~~i~g~--~--~~~----------------~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~ 174 (287)
T PF03022_consen 115 GPFTIGGE--S--FQW----------------PDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQAL 174 (287)
T ss_dssp EEEEETTE--E--EEE----------------TTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-H
T ss_pred cceeccCc--e--Eec----------------CCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccc
Confidence 00111100 0 000 01255666654 356999999888899998863 211
Q ss_pred ---cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC----CeEEEEee-CC-CCCceeEEEcC-C
Q psy5792 219 ---RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG----QYRYVLIS-GG-VDQPSALAVDP-E 288 (377)
Q Consensus 219 ---~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g----~~~~~l~~-~~-~~~P~~iavdp-~ 288 (377)
.+.+.. ......|+++|. +|+||+++-..+.|.+.+.++ ....++.. .. +..|.++++++ .
T Consensus 175 ~~~v~~lG~--------k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~ 245 (287)
T PF03022_consen 175 ASQVQDLGD--------KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEG 245 (287)
T ss_dssp HHT-EEEEE-----------SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--
T ss_pred cccceeccc--------cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecccc
Confidence 122221 224678999996 999999999999999999999 23344444 34 78999999995 3
Q ss_pred CCeEEEEe
Q psy5792 289 SGYLFWSE 296 (377)
Q Consensus 289 ~g~lywtd 296 (377)
+|+||+..
T Consensus 246 ~g~L~v~s 253 (287)
T PF03022_consen 246 DGYLWVLS 253 (287)
T ss_dssp TS-EEEEE
T ss_pred CceEEEEE
Confidence 69999986
No 36
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.73 E-value=6.5e-06 Score=73.70 Aligned_cols=247 Identities=12% Similarity=0.097 Sum_probs=163.7
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEE-EecCCCceeEEeeecCCCCcccCCCcCCCCCCceecccc
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTV-LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGP 132 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~-~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~ 132 (377)
.....|+.++. .++.+++++..++.|-+.| .+|+..++ +.++..|++|.+ .++.
T Consensus 59 p~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~-gpdg---------------------- 115 (353)
T COG4257 59 PNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVV-GPDG---------------------- 115 (353)
T ss_pred CCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEE-CCCC----------------------
Confidence 56678999999 6667999999999999999 88987655 555555999886 3321
Q ss_pred CCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 133 LSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 133 ~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
-..+.+... .|.|++-+..+. +...+|.. ...+.....||. .++|+++.. .+---|
T Consensus 116 ------------------~~Witd~~~-aI~R~dpkt~ev--t~f~lp~~~a~~nlet~vfD~-~G~lWFt~q-~G~yGr 172 (353)
T COG4257 116 ------------------SAWITDTGL-AIGRLDPKTLEV--TRFPLPLEHADANLETAVFDP-WGNLWFTGQ-IGAYGR 172 (353)
T ss_pred ------------------CeeEecCcc-eeEEecCcccce--EEeecccccCCCcccceeeCC-CccEEEeec-ccccee
Confidence 133333331 388876655444 33333322 122334455776 789999875 333335
Q ss_pred EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee-CC-CCCceeEEEcCCC
Q psy5792 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS-GG-VDQPSALAVDPES 289 (377)
Q Consensus 212 ~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~-~~-~~~P~~iavdp~~ 289 (377)
++......++.-. ..-..|+||.+.+ ++.+|++.-..+-|.+++.-....+++.. +. -..-|.|..|| -
T Consensus 173 LdPa~~~i~vfpa-------PqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-i 243 (353)
T COG4257 173 LDPARNVISVFPA-------PQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-I 243 (353)
T ss_pred cCcccCceeeecc-------CCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-c
Confidence 5554333444433 3334699999996 78899998877889988876544444432 22 23457889998 6
Q ss_pred CeEEEEecCCCCeEEEEecCCCC-eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 290 GYLFWSESGKIPLIARAGLDGKK-QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 290 g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|+++.|+|+ +++++|++..-+. +.--+...-..|..+-+| ..+|++.+|. ..+.|.+.+.. +.+.+++
T Consensus 244 g~~wittwg-~g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea-~agai~rfdpe-ta~ftv~ 312 (353)
T COG4257 244 GRAWITTWG-TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEA-DAGAIGRFDPE-TARFTVL 312 (353)
T ss_pred CcEEEeccC-CceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeecc-ccCceeecCcc-cceEEEe
Confidence 999999997 7999999866443 221122223578889999 5789999999 99999999887 3444443
No 37
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=0.00015 Score=70.18 Aligned_cols=269 Identities=16% Similarity=0.109 Sum_probs=151.4
Q ss_pred CeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCce-EEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCce
Q psy5792 28 PFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQV-VAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGIS 101 (377)
Q Consensus 28 ~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p-~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~ 101 (377)
..+|+++...+.|..+|.+.. ..++ +....+ .++++ .+.++|+++. ++.|..+| .+++....+..+..|.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i---~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARI---PTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEE---E-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEE---cCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCCCcc
Confidence 356789999999999999877 5555 333344 44666 4678999985 57999999 7888777777666699
Q ss_pred eEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec
Q psy5792 102 DFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181 (377)
Q Consensus 102 ~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~ 181 (377)
++++...+ .++++++...+.+..++....+. .. ..+.
T Consensus 82 ~i~~s~DG----------------------------------------~~~~v~n~~~~~v~v~D~~tle~--v~-~I~~ 118 (369)
T PF02239_consen 82 GIAVSPDG----------------------------------------KYVYVANYEPGTVSVIDAETLEP--VK-TIPT 118 (369)
T ss_dssp EEEE--TT----------------------------------------TEEEEEEEETTEEEEEETTT--E--EE-EEE-
T ss_pred eEEEcCCC----------------------------------------CEEEEEecCCCceeEeccccccc--ee-eccc
Confidence 98874332 25676765555577777655433 11 1222
Q ss_pred C------CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC
Q psy5792 182 S------KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 182 ~------~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~ 255 (377)
. ..+++.++...+......++-.+.++|+.++........+... ..-..|.+..+|+.++.++.+...
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i------~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI------KVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE------E--TTEEEEEE-TTSSEEEEEEGG
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee------cccccccccccCcccceeeecccc
Confidence 1 2245667766665555555556789999998764322221110 122359999999988888888777
Q ss_pred CCEEEEEEcCCCeEEEEeeCC-CCCce--eEEEcCCCCeEEEEecC-CCCeEEEEecCC---------CCeEEEEecCCC
Q psy5792 256 ENVIEVARLTGQYRYVLISGG-VDQPS--ALAVDPESGYLFWSESG-KIPLIARAGLDG---------KKQTILAQEIIM 322 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~~-~~~P~--~iavdp~~g~lywtd~g-~~~~I~r~~ldG---------~~~~~l~~~~~~ 322 (377)
.++|.+++........++..+ ..+|. .=..||..|.+ |+..+ ....|--+..+- +..+.+-. ..
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v-w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~--~G 269 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV-WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT--QG 269 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE-EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SS
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCCCcceE-EeeccccceecccccCCccccchhhcCeEEEEEEC--CC
Confidence 889999999887666666542 22332 33478866665 54432 223333332221 12233332 24
Q ss_pred CceEEEEeCCCCEEEEE---EeCCCCeEEEEEcc
Q psy5792 323 PIKDITLDRKNKRVYWC---YSVGSNVLESMDYS 353 (377)
Q Consensus 323 ~P~glalD~~~~~LYw~---d~~~~~~i~~~~~~ 353 (377)
.|..+...+.+.+||+. .. ..+.|.-++..
T Consensus 270 ~glFi~thP~s~~vwvd~~~~~-~~~~v~viD~~ 302 (369)
T PF02239_consen 270 GGLFIKTHPDSRYVWVDTFLNP-DADTVQVIDKK 302 (369)
T ss_dssp SS--EE--TT-SEEEEE-TT-S-SHT-EEEEECC
T ss_pred CcceeecCCCCccEEeeccCCC-CCceEEEEECc
Confidence 55667776555555554 24 55677777766
No 38
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=9e-06 Score=73.63 Aligned_cols=204 Identities=10% Similarity=0.123 Sum_probs=136.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEcCCCCceEEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSINLDGSNSTVL 94 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~g~~~~~~ 94 (377)
-.++++-++++..||-+-..--.|..++++|. ++++- ...+.+|.+|++- +++.-.+|-..+.+..+..+-+.. ++
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~-~~ 164 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT-VI 164 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc-EE
Confidence 47899999999999999888889999999999 87773 4678999999994 445556677777776665211100 00
Q ss_pred ecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCcee
Q psy5792 95 RNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKV 174 (377)
Q Consensus 95 ~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~ 174 (377)
. . . ..++.|+....
T Consensus 165 ~-----------------------------------------------------------~--~---~~~i~L~~~~k-- 178 (316)
T COG3204 165 S-----------------------------------------------------------A--K---VQKIPLGTTNK-- 178 (316)
T ss_pred e-----------------------------------------------------------c--c---ceEEeccccCC--
Confidence 0 0 0 11334433211
Q ss_pred eEEEEecCCCCceEEEEEECCCCEEEEEEcC-CCcEEEEEcCCCCcEEEEe-ccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 175 TQVLGPLSKVSLAAKVDFHAAEDYIYWVDID-HGTISRTHRDGTGRENIIE-YVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 175 ~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~-~~~I~~~~~~G~~~~~i~~-~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
....-.|+++|+.++++|++-.. .-.|+..+..-+....-.. .....-.--+....|+.+|..+++|++-
T Consensus 179 --------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVL 250 (316)
T COG3204 179 --------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVL 250 (316)
T ss_pred --------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEE
Confidence 12346799999999999998653 4577777644222111111 0000000003357899999999999999
Q ss_pred cCCCCEEEEEEcCCCeEEEEee--------CCCCCceeEEEcCCCCeEEEEec
Q psy5792 253 DPKENVIEVARLTGQYRYVLIS--------GGVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 253 d~~~~~I~~~~~~g~~~~~l~~--------~~~~~P~~iavdp~~g~lywtd~ 297 (377)
....+.+...+++|..+..+.- .++.+|.|||+|. .|.||.+..
T Consensus 251 S~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvSE 302 (316)
T COG3204 251 SDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVSE 302 (316)
T ss_pred ecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEec
Confidence 8888999999999986554332 2478999999996 899999863
No 39
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.66 E-value=5.3e-05 Score=73.23 Aligned_cols=297 Identities=9% Similarity=0.049 Sum_probs=163.7
Q ss_pred eeEeeccccC------CCCcCC-ccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeE
Q psy5792 3 YLHVLPYTRN------PSFGAV-ASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRI 71 (377)
Q Consensus 3 ~~~~~~~~~~------~~~~~~-~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~l 71 (377)
-+.|.|-... ++...| .+++..+++.++|++.. .+.|..+|+... ..++ .....|.++++ .+.++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i---~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATI---KVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEE---E-SSEEEEEEE--TTTEE
T ss_pred EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEE---ecCCCcceEEEcCCCCEE
Confidence 3455555433 344443 56777888889999964 689999999777 6666 45778999999 56689
Q ss_pred EEEcCCCCceEEEc-CCCCceEEEecCC------CceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCC
Q psy5792 72 IYSDANDGNIRSIN-LDGSNSTVLRNNA------GISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDF 144 (377)
Q Consensus 72 y~td~~~~~I~~~~-~~g~~~~~~~~~~------~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~ 144 (377)
|+++...+.+..+| .+.+..+.+.... ++.-..++...
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~----------------------------------- 137 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP----------------------------------- 137 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S-----------------------------------
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC-----------------------------------
Confidence 99999999999999 6666665554211 01111111111
Q ss_pred CcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe
Q psy5792 145 HAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224 (377)
Q Consensus 145 C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~ 224 (377)
..+.++++..+.++|..++...... .....+.....+....+|+...+++.+....++|..++........++.
T Consensus 138 ---~~~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 138 ---GRPEFVVNLKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp ---SSSEEEEEETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ---CCCEEEEEEccCCeEEEEEeccccc---cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 1123566666667798888755432 1222233345688899999888999988888899999987433333332
Q ss_pred ccccCCCCCCCCcceE--EEeccCCeEEEEcCC--CCEEEEEEcCC---------CeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 225 YVETGDPTPVDQFTDI--AVDWIAQNIYWSDPK--ENVIEVARLTG---------QYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~i--avD~~~~~lYwtd~~--~~~I~~~~~~g---------~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
. ....+|..+ -.++..+- +|+-.+ ...|-.+..+- +..+.+-. ...|..+..+|...+
T Consensus 212 ~------g~~p~~~~~~~~php~~g~-vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~--~G~glFi~thP~s~~ 282 (369)
T PF02239_consen 212 T------GKKPHPGPGANFPHPGFGP-VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT--QGGGLFIKTHPDSRY 282 (369)
T ss_dssp -------SSSBEETTEEEEEETTTEE-EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE---SSSS--EE--TT-SE
T ss_pred c------cccccccccccccCCCcce-EEeeccccceecccccCCccccchhhcCeEEEEEEC--CCCcceeecCCCCcc
Confidence 0 111122222 25654444 454332 22323322221 12333322 345689999998888
Q ss_pred EEEEecC--CCCeEEEEecCCCCeEEEEec-CCCCceEEEEeCCCCEEEEEEeCCCC-eEEEEEccC
Q psy5792 292 LFWSESG--KIPLIARAGLDGKKQTILAQE-IIMPIKDITLDRKNKRVYWCYSVGSN-VLESMDYSG 354 (377)
Q Consensus 292 lywtd~g--~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD~~~~~LYw~d~~~~~-~i~~~~~~G 354 (377)
||+.... ....|..++..--....-+.. .-..+..+.....+.++|++.+ ..+ +|..++-..
T Consensus 283 vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~-~~~~~i~v~D~~T 348 (369)
T PF02239_consen 283 VWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVW-DGNGAIVVYDAKT 348 (369)
T ss_dssp EEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTT
T ss_pred EEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEe-cCCCEEEEEECCC
Confidence 7776211 246788877664321111111 1123678889999999999999 777 898888763
No 40
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=0.00015 Score=71.30 Aligned_cols=235 Identities=12% Similarity=0.116 Sum_probs=141.8
Q ss_pred cCCCCeEEEEeC-C--CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCe-EEEEcCC--CCceEEEc-CCCCceEE
Q psy5792 24 PQSGPFVYGVKT-L--SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGR-IIYSDAN--DGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 24 d~~~~~ly~~d~-~--~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~-ly~td~~--~~~I~~~~-~~g~~~~~ 93 (377)
...+..+|++.. . ..+|..+|.||. .+++. ... .-..-.+ .+++ +|++... ...|+..+ .+|+...
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~--~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~- 227 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIV--KGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK- 227 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEc--cCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-
Confidence 445678888873 3 579999999999 87776 222 2223344 4554 7776554 46799999 4454433
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEEEcCCCC
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGIKYNKNE 171 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~~l~~~~ 171 (377)
+....+.......+|+.. .++++.. ....|..+++++..
T Consensus 228 lt~~~g~~~~~~~SPDG~---------------------------------------~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 228 IASSQGMLVVSDVSKDGS---------------------------------------KLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred EecCCCcEEeeEECCCCC---------------------------------------EEEEEEccCCCcEEEEEECCCCc
Confidence 332222111112233321 3444332 12348888877664
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
. ..+..... ....-.+.+.+++||++.... ..|+++++++...+.+.. .+... .++.+.++.|
T Consensus 269 ~---~~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-------~g~~~---~~~SPDG~~I 333 (419)
T PRK04043 269 L---TQITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-------HGKNN---SSVSTYKNYI 333 (419)
T ss_pred E---EEcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-------CCCcC---ceECCCCCEE
Confidence 3 12221111 122335777788899886433 389999999877656554 22222 3667778888
Q ss_pred EEEcCCC--------CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 250 YWSDPKE--------NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 250 Ywtd~~~--------~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.++.... ..|.+.++++...+.|...... ...+..|....|+++.. +....|..++++|.....+..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~--~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVN--QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCc--CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 7775432 4899999998877666654322 34678888888888764 335679999999988777654
No 41
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.59 E-value=8.8e-06 Score=79.77 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=108.5
Q ss_pred cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc------CCeEEEEcC
Q psy5792 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI------AQNIYWSDP 254 (377)
Q Consensus 181 ~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~------~~~lYwtd~ 254 (377)
.+++..|.+|++.+ +++||++....++|++++.++...+.+..........+...+.+||+++. ++.||++..
T Consensus 26 a~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 26 LSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred ECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 35788999999988 67999999777999999876543333221000000013456899999854 457888741
Q ss_pred ---------CCCEEEEEEcCCC-----eEEEEeeC----CCCCceeEEEcCCCCeEEEEe--cCC---------------
Q psy5792 255 ---------KENVIEVARLTGQ-----YRYVLISG----GVDQPSALAVDPESGYLFWSE--SGK--------------- 299 (377)
Q Consensus 255 ---------~~~~I~~~~~~g~-----~~~~l~~~----~~~~P~~iavdp~~g~lywtd--~g~--------------- 299 (377)
...+|.|..++.. ..++++.. ....-..|+++| .|+||++- .+.
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~ 183 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHT 183 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhccc
Confidence 2468999988632 23445542 123346899998 68999974 210
Q ss_pred --------------CCeEEEEecCCCC----------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 300 --------------IPLIARAGLDGKK----------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 300 --------------~~~I~r~~ldG~~----------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
..+|.|++.||+- +..+..-.+.+|.||++|+ +++||.+|. +.
T Consensus 184 ~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~-Gp 250 (454)
T TIGR03606 184 PTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQ-GP 250 (454)
T ss_pred cccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEec-CC
Confidence 2379999999972 2345665699999999997 799999998 55
No 42
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.00036 Score=69.13 Aligned_cols=184 Identities=11% Similarity=0.123 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+.... ....+.++.+.+.+|+++-.. ...|+.+++++...+.+.. .-....
T Consensus 227 ~i~~~dl~~g~~---~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~--------~~~~~~ 293 (435)
T PRK05137 227 RVYLLDLETGQR---ELVGNFP--GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD--------SPAIDT 293 (435)
T ss_pred EEEEEECCCCcE---EEeecCC--CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC--------CCCccC
Confidence 488888876543 2222221 234466777878888776433 3469999998766555443 112233
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.+++|...+.+... ...-...+..|...+|+++... ...+|...+++|...+.
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 45666667777766432 35899999998766655542 2223456788888899887643 23589999998877665
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCC-----CeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGS-----NVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~-----~~i~~~~~~G~~~~~~~ 361 (377)
+... .....+++.+.++.||++-. .. ..++.++++|+..+.+.
T Consensus 373 lt~~--~~~~~p~~spDG~~i~~~~~-~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 373 LTSG--FLVEGPTWAPNGRVIMFFRQ-TPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ccCC--CCCCCCeECCCCCEEEEEEc-cCCCCCcceEEEEECCCCceEEcc
Confidence 5443 23445677777788888654 22 47999999988776553
No 43
>KOG1520|consensus
Probab=98.51 E-value=3.1e-06 Score=79.46 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=104.6
Q ss_pred CCEEEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee
Q psy5792 196 EDYIYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS 274 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~ 274 (377)
++.|+|+-...+-|-++...- +.+.............-.++|-|||+|..+++||++|.-. -++..+++|...+.+..
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD 153 (376)
T ss_pred CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc
Confidence 556678766666666555521 1111110000000002347899999998888999999874 47778888877544444
Q ss_pred CC----CCCceeEEEcCCCCeEEEEecCC----------------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCC
Q psy5792 275 GG----VDQPSALAVDPESGYLFWSESGK----------------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNK 334 (377)
Q Consensus 275 ~~----~~~P~~iavdp~~g~lywtd~g~----------------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~ 334 (377)
.. +.-..++.||+ +|.+||||..+ .+|+.+.+..-+..++|..+ +..|+|+++.+...
T Consensus 154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~-L~F~NGlaLS~d~s 231 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG-LYFPNGLALSPDGS 231 (376)
T ss_pred cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc-ccccccccCCCCCC
Confidence 32 33357999998 99999999542 22343433333344455554 89999999999999
Q ss_pred EEEEEEeCCCCeEEEEEccCCce
Q psy5792 335 RVYWCYSVGSNVLESMDYSGGSK 357 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~~~ 357 (377)
.+.+++. ...+|.++=+.|...
T Consensus 232 fvl~~Et-~~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 232 FVLVAET-TTARIKRYWIKGPKA 253 (376)
T ss_pred EEEEEee-ccceeeeeEecCCcc
Confidence 9999999 999999998887643
No 44
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00039 Score=68.92 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=134.8
Q ss_pred CeEEEEeCC------CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcCCCCceEEEec
Q psy5792 28 PFVYGVKTL------SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINLDGSNSTVLRN 96 (377)
Q Consensus 28 ~~ly~~d~~------~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~~g~~~~~~~~ 96 (377)
.+|+|+... ..+|+.+|.+|. .+++. .........++ .+.+|+++... ...|+..+..+...+.+..
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~ 243 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN 243 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec
Confidence 456555432 348999999999 87775 33334455556 56677666532 3568888843333333322
Q ss_pred CCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCce
Q psy5792 97 NAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS--GYDIMGIKYNKNESK 173 (377)
Q Consensus 97 ~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~ 173 (377)
..+ ..... ++|+. ..|+++... ...|..+++++...
T Consensus 244 ~~g~~~~~~-~SPDG---------------------------------------~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 244 FPGMTFAPR-FSPDG---------------------------------------RKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred CCCcccCcE-ECCCC---------------------------------------CEEEEEEecCCCceEEEEECCCCce-
Confidence 111 11111 12211 234444321 12377778776543
Q ss_pred eeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 174 ~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
..+.. ........++.+.+.+|+++.... ..|+.++++|...+.+.. .-......++.+.++.|++
T Consensus 283 --~~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~--------~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 283 --TRLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF--------GGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred --EEccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec--------CCCcccCeEECCCCCEEEE
Confidence 11111 112233456777778887765333 479999998876666553 1122334566666788877
Q ss_pred EcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CC---CeEEEEecCCCCeEEEE
Q psy5792 252 SDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KI---PLIARAGLDGKKQTILA 317 (377)
Q Consensus 252 td~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~---~~I~r~~ldG~~~~~l~ 317 (377)
+... ..+|.+.++++...+.+... ......++.|....|+++-.. .. .+|++++++|...+.+.
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 7543 34799999988766555432 245677889988888886532 12 57999999988776554
No 45
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.46 E-value=2.7e-05 Score=76.35 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=64.1
Q ss_pred CCEEEEEEc---------CCCcEEEEEcCCC-----CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC------
Q psy5792 196 EDYIYWVDI---------DHGTISRTHRDGT-----GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK------ 255 (377)
Q Consensus 196 ~~~ly~sd~---------~~~~I~~~~~~G~-----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~------ 255 (377)
+++||++-. ...+|.|+.++.. ..++++.. ... ...+.-..|++++ .+.||++-..
T Consensus 96 n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~-lP~--~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~ 171 (454)
T TIGR03606 96 NPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG-LPA--GNDHNGGRLVFGP-DGKIYYTIGEQGRNQG 171 (454)
T ss_pred CcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEec-CCC--CCCcCCceEEECC-CCcEEEEECCCCCCCc
Confidence 457777631 1357888877521 23444431 000 1123356789986 5789996221
Q ss_pred --------------------------CCEEEEEEcCCCe----------EEEEeeCCCCCceeEEEcCCCCeEEEEecC
Q psy5792 256 --------------------------ENVIEVARLTGQY----------RYVLISGGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 256 --------------------------~~~I~~~~~~g~~----------~~~l~~~~~~~P~~iavdp~~g~lywtd~g 298 (377)
.++|.|++.||+. +..+.+.++.+|.++++|| +|.||.+|.|
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 2489999999962 3346666799999999999 8999999976
No 46
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.45 E-value=5.4e-07 Score=58.27 Aligned_cols=41 Identities=41% Similarity=0.767 Sum_probs=36.3
Q ss_pred EEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 271 ~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
+++..++..|.+||+|+.+++|||+|+. ...|++++++|++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~-~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCC-CCEEEEEeCCCCC
Confidence 3455578999999999999999999996 5999999999975
No 47
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.44 E-value=2e-06 Score=64.93 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=58.6
Q ss_pred ceEEEeccCCeEEEEcCC-----------------CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCC
Q psy5792 238 TDIAVDWIAQNIYWSDPK-----------------ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~-----------------~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~ 300 (377)
.+|+|+..+|.|||||.. ++++.+.++..+..++++++ +.-|+|||+.+.+.+|++++.+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~-~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETG-R 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGG-G
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEecc-C
Confidence 378999767999999974 47999999999998888884 9999999999999999999986 6
Q ss_pred CeEEEEecCCC
Q psy5792 301 PLIARAGLDGK 311 (377)
Q Consensus 301 ~~I~r~~ldG~ 311 (377)
.+|.|..+.|.
T Consensus 79 ~Ri~rywl~Gp 89 (89)
T PF03088_consen 79 YRILRYWLKGP 89 (89)
T ss_dssp TEEEEEESSST
T ss_pred ceEEEEEEeCC
Confidence 99999999873
No 48
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00049 Score=68.44 Aligned_cols=245 Identities=10% Similarity=0.087 Sum_probs=139.6
Q ss_pred CCccccccCCCCeEEEEeCCC----CcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLS----HSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLD 87 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~----~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~ 87 (377)
..+|..-...+.-.|++.... .+|..+|.||. .+++. .........++ .+.+|+|+...+ ..|+.++.+
T Consensus 173 ~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~ 250 (448)
T PRK04792 173 KLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIY 250 (448)
T ss_pred HhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECC
Confidence 445555555555667766543 37888999999 77775 22222233445 566787765433 358888844
Q ss_pred CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEE
Q psy5792 88 GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMG 164 (377)
Q Consensus 88 g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~ 164 (377)
+...+.+....+ .... ..+|+. ..|+++....| .|..
T Consensus 251 tg~~~~lt~~~g~~~~~-~wSPDG---------------------------------------~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 251 TQVREKVTSFPGINGAP-RFSPDG---------------------------------------KKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCCeEEecCCCCCcCCe-eECCCC---------------------------------------CEEEEEEeCCCCeEEEE
Confidence 333333322111 1111 112221 23444332222 4777
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav 242 (377)
+++++... ..+.. ........++.+.++.|+++.... ..|+++++++...+.+.. .+ ....+.++
T Consensus 291 ~dl~tg~~---~~lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~-------~g-~~~~~~~~ 357 (448)
T PRK04792 291 VDIATKAL---TRITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF-------EG-EQNLGGSI 357 (448)
T ss_pred EECCCCCe---EECcc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec-------CC-CCCcCeeE
Confidence 77776533 11111 112234456777788888875433 479999988665555432 11 12334577
Q ss_pred eccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 243 DWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 243 D~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
.+.++.||++.... .+|.+.++++...+.+..... -...++.|....|+++... ....|+.++.+|...+.+..
T Consensus 358 SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 358 TPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 77788898886543 478899998876655543322 1233688888888887642 24568888999988776643
No 49
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=0.0005 Score=65.91 Aligned_cols=135 Identities=10% Similarity=0.061 Sum_probs=102.4
Q ss_pred CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC
Q psy5792 197 DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG 276 (377)
Q Consensus 197 ~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~ 276 (377)
+.+-..+.....+...+.+|...+.+.. +++.+.++++++.+..+-+++. +..|++.+++....+.+-.+.
T Consensus 372 e~~vigt~dgD~l~iyd~~~~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNd-r~el~vididngnv~~idkS~ 442 (668)
T COG4946 372 EGDVIGTNDGDKLGIYDKDGGEVKRIEK--------DLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGNVRLIDKSE 442 (668)
T ss_pred cceEEeccCCceEEEEecCCceEEEeeC--------CccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCCeeEecccc
Confidence 3455555566688888999887777764 8999999999976666766655 468999999988887776666
Q ss_pred CCCceeEEEcCCCCeEEEEecCC--CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 277 VDQPSALAVDPESGYLFWSESGK--IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 277 ~~~P~~iavdp~~g~lywtd~g~--~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
-....+++++|...++=++=... ...|...+|+|...-.+.+. -.+-..-|.|+.++.||+...
T Consensus 443 ~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 443 YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCcEEEEEec
Confidence 66788999999888877764321 45788899999776665554 345556789999999999876
No 50
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=0.0016 Score=64.21 Aligned_cols=241 Identities=8% Similarity=0.057 Sum_probs=146.3
Q ss_pred EEECCeEEEEcCC---CCceEEEcCCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCC
Q psy5792 65 VFYKGRIIYSDAN---DGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAK 141 (377)
Q Consensus 65 av~~~~ly~td~~---~~~I~~~~~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G 141 (377)
.+....+|++... ..+|+.+|.+|.+.+++.... +.--...+|+.+
T Consensus 152 ~f~~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~------------------------------ 200 (419)
T PRK04043 152 DWMKRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQ------------------------------ 200 (419)
T ss_pred CceeeEEEEEEccCCCcceEEEECCCCCceeEEccCC-CeEeEEECCCCC------------------------------
Confidence 4456677887632 457888898998877654331 111111222211
Q ss_pred cCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCC
Q psy5792 142 VDFHAGISDFILFSVNS--GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGT 217 (377)
Q Consensus 142 ~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~ 217 (377)
..++++... ...|..+++.+... ..+.. ........++.+.+.+|.++... ...|+.+++++.
T Consensus 201 --------~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 201 --------TAFYYTSYGERKPTLYKYNLYTGKK---EKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred --------cEEEEEEccCCCCEEEEEECCCCcE---EEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 124443222 23588888876544 22222 12223445677778788876543 358999999877
Q ss_pred CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 218 GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 218 ~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
..+.+.. ... .-..-.+.+.++.||++... ...|++.++++...+.+...+... .+++|..++|.++
T Consensus 268 ~~~~LT~-------~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~ 336 (419)
T PRK04043 268 TLTQITN-------YPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYS 336 (419)
T ss_pred cEEEccc-------CCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEE
Confidence 6555543 111 11122566667788887543 348999999987665554432222 3789988888887
Q ss_pred ecCC-------CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 296 ESGK-------IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 296 d~g~-------~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
.... ...|+.+++++...+.|...... ...+..+.++.|+++... +...+..++++|..++.+..
T Consensus 337 ~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~--~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 337 SRETNNEFGKNTFNLYLISTNSDYIRRLTANGVN--QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred EcCCCcccCCCCcEEEEEECCCCCeEECCCCCCc--CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeec
Confidence 6421 15899999998887776654221 235666777888887651 34469999999877766654
No 51
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00087 Score=66.25 Aligned_cols=243 Identities=11% Similarity=0.126 Sum_probs=137.3
Q ss_pred CccccccCCCCeEEEEeCC-----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCC
Q psy5792 18 VASTLKPQSGPFVYGVKTL-----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLD 87 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~-----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~ 87 (377)
.+|......+..+|+.... ..+|..+|++|. .+.+. .........++ .+++|+++...+ ..|+..+.+
T Consensus 154 ltg~~g~f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~ 231 (430)
T PRK00178 154 LTGIKGAFSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD 231 (430)
T ss_pred HhCCCccceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC
Confidence 3444444444455655432 235888999999 77775 33333455556 567887765443 468888844
Q ss_pred CCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--CeEEE
Q psy5792 88 GSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG--YDIMG 164 (377)
Q Consensus 88 g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~--~~I~~ 164 (377)
+...+.+....+ .... .++|+. ..|+++.... ..|..
T Consensus 232 ~g~~~~l~~~~g~~~~~-~~SpDG---------------------------------------~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 232 TGRREQITNFEGLNGAP-AWSPDG---------------------------------------SKLAFVLSKDGNPEIYV 271 (430)
T ss_pred CCCEEEccCCCCCcCCe-EECCCC---------------------------------------CEEEEEEccCCCceEEE
Confidence 333333321111 1111 112221 2344443221 24788
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEE
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iav 242 (377)
+++++... ..+. ..........+.+.++.|+++.... ..|+++++++...+.+.. .. ......++
T Consensus 272 ~d~~~~~~---~~lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-------~~-~~~~~~~~ 338 (430)
T PRK00178 272 MDLASRQL---SRVT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-------VG-NYNARPRL 338 (430)
T ss_pred EECCCCCe---EEcc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-------CC-CCccceEE
Confidence 88876543 1111 1112233456677678888775433 479999987666555443 11 12223466
Q ss_pred eccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEE
Q psy5792 243 DWIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 243 D~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~ 317 (377)
.+.++.|+++.... ..|.+.++++...+.+.... ......+.|....|+++... ...+|+.++++|...+.+.
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 77788898886543 36899999887666665432 22345788888889888643 2467899999987765543
No 52
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00095 Score=66.39 Aligned_cols=186 Identities=13% Similarity=0.096 Sum_probs=116.2
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++.+... ..+....+ .....++.+.+.+|+++....+ .|+.+++++...+.+.. ......
T Consensus 243 ~L~~~dl~tg~~---~~lt~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~--------~~~~~~ 309 (448)
T PRK04792 243 EIFVQDIYTQVR---EKVTSFPG--INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITR--------HRAIDT 309 (448)
T ss_pred EEEEEECCCCCe---EEecCCCC--CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc--------CCCCcc
Confidence 488888876543 12222221 2235677887888988644333 69999998765554433 222344
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .....+.++.|...+||++... ...+|++.++++...+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 55666667778777543 35799999986655444322 2223456889988899998653 24588999998877666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
+...... ...++.+.++.|+++... ....++.++.+|...+.+..
T Consensus 389 lt~~~~d--~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 389 LTSTRLD--ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred ccCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 5443211 123566677888887651 23458889999887666643
No 53
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.38 E-value=1.1e-06 Score=56.76 Aligned_cols=40 Identities=25% Similarity=0.421 Sum_probs=36.1
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
++...+..|+||++|+.+++|||+|. ..+.|++++++|++
T Consensus 3 ~~~~~~~~~~~la~d~~~~~lYw~D~-~~~~I~~~~~~g~~ 42 (43)
T smart00135 3 LLSEGLGHPNGLAVDWIEGRLYWTDW-GLDVIEVANLDGTN 42 (43)
T ss_pred EEECCCCCcCEEEEeecCCEEEEEeC-CCCEEEEEeCCCCC
Confidence 44556899999999999999999999 99999999999875
No 54
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.35 E-value=0.0005 Score=64.10 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=98.1
Q ss_pred CCCceEEEEEECCC-----CEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCC------------CCCCCcceEEEecc
Q psy5792 183 KVSLAAKVDFHAAE-----DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP------------TPVDQFTDIAVDWI 245 (377)
Q Consensus 183 ~~~~~~~l~~d~~~-----~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~------------~~~~~p~~iavD~~ 245 (377)
..+....+.+|... ..+|++|.....|..+++.......+....-...+ .......|||+.+.
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 34556677777644 58999998888888888764322222221000000 00123667888663
Q ss_pred ---CCeEEEEcCCCCEEEEEEcC----CC---------eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 246 ---AQNIYWSDPKENVIEVARLT----GQ---------YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 246 ---~~~lYwtd~~~~~I~~~~~~----g~---------~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
++.|||.--...++++...+ .. ..+.+.. ...+..|+++|+ +|.||+++.. ...|.+.+.+
T Consensus 139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~ 215 (287)
T PF03022_consen 139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPD 215 (287)
T ss_dssp STTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECC-CTEEEEEETT
T ss_pred CCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECC-CCcEEEecCC-CCeEEEEeCC
Confidence 45799998887788887652 11 1122322 124568999998 9999999985 7999999999
Q ss_pred C----CCeEEEEec-C-CCCceEEEEeC-CCCEEEEEEeCCCC
Q psy5792 310 G----KKQTILAQE-I-IMPIKDITLDR-KNKRVYWCYSVGSN 345 (377)
Q Consensus 310 G----~~~~~l~~~-~-~~~P~glalD~-~~~~LYw~d~~~~~ 345 (377)
+ .+.+++++. . +.+|.+++++. .++.||+... ..+
T Consensus 216 ~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn-rl~ 257 (287)
T PF03022_consen 216 GPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN-RLQ 257 (287)
T ss_dssp TSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE--S--
T ss_pred CCcCccchheeEEcCceeeccceeeeccccCceEEEEEC-cch
Confidence 8 456666665 3 89999999984 2689999876 443
No 55
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00075 Score=66.84 Aligned_cols=243 Identities=12% Similarity=0.145 Sum_probs=137.4
Q ss_pred ccccccCCCCeEEEEeCC-----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCCC
Q psy5792 19 ASTLKPQSGPFVYGVKTL-----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLDG 88 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~-----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~g 88 (377)
+|..-...+.-.|+.... ...|...|++|. .+++. .......+.++ .+++|+++.... ..|+.++.++
T Consensus 160 tg~~g~f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~ 237 (433)
T PRK04922 160 TGVPGAFWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT 237 (433)
T ss_pred cCCCCcccceEEEEEEeCCCCCceEEEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC
Confidence 344334444444655542 246888999999 77775 33223344455 566788776433 4588888443
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeC--CCCeEEEE
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVN--SGYDIMGI 165 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~--~~~~I~~~ 165 (377)
...+.+....+ ..... ++++. ..++++.. ....|..+
T Consensus 238 g~~~~l~~~~g~~~~~~-~SpDG---------------------------------------~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 238 GQRELVASFRGINGAPS-FSPDG---------------------------------------RRLALTLSRDGNPEIYVM 277 (433)
T ss_pred CCEEEeccCCCCccCce-ECCCC---------------------------------------CEEEEEEeCCCCceEEEE
Confidence 33333321111 11111 12211 23444321 11248888
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++++... ..+. .........++.+.+..|+++.... ..|+.+++++...+.+.. .+ ......++.
T Consensus 278 d~~~g~~---~~lt--~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-------~g-~~~~~~~~S 344 (433)
T PRK04922 278 DLGSRQL---TRLT--NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-------QG-NYNARASVS 344 (433)
T ss_pred ECCCCCe---EECc--cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec-------CC-CCccCEEEC
Confidence 8776543 1111 1112234567777778888765433 369999987765555443 12 223456777
Q ss_pred ccCCeEEEEcCCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 244 WIAQNIYWSDPKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 244 ~~~~~lYwtd~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
+.++.|+++.... .+|.+.++++...+.+.... .....+..|....|+++.. +...+|+..+++|...+.+..
T Consensus 345 pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 345 PDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 7788898875433 47999999877665554321 2345678887777777754 235689999999987766643
No 56
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0021 Score=63.55 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=132.6
Q ss_pred CCCCeEEEEeCC-CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcC-CCCceEEEecC
Q psy5792 25 QSGPFVYGVKTL-SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINL-DGSNSTVLRNN 97 (377)
Q Consensus 25 ~~~~~ly~~d~~-~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~-~g~~~~~~~~~ 97 (377)
..+...|+.... ..+|..+|.+|. .+++. .........++ .+.+|+++.... ..|+..+. .|+. ..+...
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~ 238 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF 238 (427)
T ss_pred cccEEEEEEccCCccEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC
Confidence 334455555432 467999999999 77775 22223334455 566777765433 45888884 4443 333211
Q ss_pred CCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCC--CeEEEEEcCCCCceee
Q psy5792 98 AGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSG--YDIMGIKYNKNESKVT 175 (377)
Q Consensus 98 ~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~--~~I~~~~l~~~~~~~~ 175 (377)
.+......++|+. ..|+++.... ..|..+++++...
T Consensus 239 ~g~~~~~~~SPDG---------------------------------------~~la~~~~~~g~~~Iy~~d~~~~~~--- 276 (427)
T PRK02889 239 KGSNSAPAWSPDG---------------------------------------RTLAVALSRDGNSQIYTVNADGSGL--- 276 (427)
T ss_pred CCCccceEECCCC---------------------------------------CEEEEEEccCCCceEEEEECCCCCc---
Confidence 1110011122322 1344432211 2377777765533
Q ss_pred EEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 176 QVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 176 ~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
..+.. .........+.+.+.+|+++... .-.|+.+++++...+.+.. .+ ......++.+.++.|+++.
T Consensus 277 ~~lt~--~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~-------~g-~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 277 RRLTQ--SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF-------TG-SYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EECCC--CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec-------CC-CCcCceEECCCCCEEEEEE
Confidence 11111 11123345677778888876432 3378888887665555443 11 1223456776688888775
Q ss_pred CCC--CEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEE
Q psy5792 254 PKE--NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILA 317 (377)
Q Consensus 254 ~~~--~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~ 317 (377)
... ..|.+.++++...+.+.... ........|.+..|+++.. +....++.++++|...+.+.
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 543 37999999877665555432 2356788988888888753 22456888899988776654
No 57
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.23 E-value=1.1e-05 Score=60.92 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=57.0
Q ss_pred eeEEEcCCCCeEEEEecC----------------CCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCC
Q psy5792 281 SALAVDPESGYLFWSESG----------------KIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGS 344 (377)
Q Consensus 281 ~~iavdp~~g~lywtd~g----------------~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~ 344 (377)
.+++|++.+|.|||||.. .++++.+.+......+++... +..|+|+++.+.+..|.+++. ..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et-~~ 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAET-GR 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEG-GG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEec-cC
Confidence 368999877999999942 246899999987777777776 999999999999999999999 99
Q ss_pred CeEEEEEccC
Q psy5792 345 NVLESMDYSG 354 (377)
Q Consensus 345 ~~i~~~~~~G 354 (377)
.+|.+.-+.|
T Consensus 79 ~Ri~rywl~G 88 (89)
T PF03088_consen 79 YRILRYWLKG 88 (89)
T ss_dssp TEEEEEESSS
T ss_pred ceEEEEEEeC
Confidence 9999998876
No 58
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.0037 Score=61.91 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++.+... ..+.... ....+.++.+.+++|+++-... ..|+.+++++...+.+.. ......
T Consensus 229 ~l~~~dl~~g~~---~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~--------~~~~~~ 295 (433)
T PRK04922 229 AIYVQDLATGQR---ELVASFR--GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN--------HFGIDT 295 (433)
T ss_pred EEEEEECCCCCE---EEeccCC--CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc--------CCCCcc
Confidence 488888866533 2222222 2234567888788888764333 379999998765544432 222234
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .......++.|...+|+++... ....|+..++++...+.
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT 374 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE
Confidence 56777767778776432 34699999887655444432 2334578999988999988642 23479999998777665
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEEe
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~~ 362 (377)
+.... .....++.+.++.|+++... ....|+.++.+|+..+.+..
T Consensus 375 Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 375 LTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred CCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 54431 22345677677778887651 34579999999877666643
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.18 E-value=0.0045 Score=55.44 Aligned_cols=265 Identities=15% Similarity=0.138 Sum_probs=146.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.+.++++++.++.|+... ..+.|...+++.. ...+. ........+.+. .+..+++-..++.|...+ .+++..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEEEe--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 4577888888766665443 4778888888766 34332 222233477773 333444444467888888 444444
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+..... +..+.. +++ ..++++....+.|..+++...
T Consensus 87 ~~~~~~~~~i~~~~~-~~~----------------------------------------~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 87 RTLTGHTSYVSSVAF-SPD----------------------------------------GRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEEeccCCcEEEEEE-cCC----------------------------------------CCEEEEecCCCeEEEEECCCc
Confidence 44432221 333332 111 124444433345888877633
Q ss_pred CceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 171 ESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 171 ~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
.. ...+. ....+..+++++.+..++.. ...+.|...++.......... ..-..+..+++.+.++.|
T Consensus 126 ~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KC-----LTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLRTGKCVATLT-------GHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EE-----EEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcEEEEEccccccceeEe-------cCccccceEEECCCcCEE
Confidence 22 11122 23457888888864444444 346788888886333222222 223357888888765566
Q ss_pred EEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEE
Q psy5792 250 YWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITL 329 (377)
Q Consensus 250 Ywtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glal 329 (377)
+.+.. .+.|.+.++........+......+..++++|. +.++.+.. ....|...++........+...-..+..+++
T Consensus 193 ~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 193 LSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS-EDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred EEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc-CCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence 66655 778999998754333333222346789999986 55555543 2467777777643322222222245677888
Q ss_pred eCCCCEEEEEE
Q psy5792 330 DRKNKRVYWCY 340 (377)
Q Consensus 330 D~~~~~LYw~d 340 (377)
++.+..|+.+.
T Consensus 270 ~~~~~~l~~~~ 280 (289)
T cd00200 270 SPDGKRLASGS 280 (289)
T ss_pred CCCCCEEEEec
Confidence 75544444433
No 60
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0064 Score=60.17 Aligned_cols=244 Identities=11% Similarity=0.081 Sum_probs=138.5
Q ss_pred CccccccCCCCeEEEEeCC----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCC--CCceEEEcCCC
Q psy5792 18 VASTLKPQSGPFVYGVKTL----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAN--DGNIRSINLDG 88 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~--~~~I~~~~~~g 88 (377)
.+|.--...+...|+.... ..+|+.+|.||. .+++. .+.......++ .+.+|.++... ...|+..+.++
T Consensus 155 ltg~~g~f~~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~ 232 (429)
T PRK03629 155 LTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN 232 (429)
T ss_pred hcCCCCccCCeEEEEEeeCCCCcceeEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC
Confidence 3444444445556666543 347999999999 77775 33333445566 55677665432 24577777433
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEEE
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMGI 165 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~~ 165 (377)
...+.+....+ .... ..+|+. ..|+++....| .|..+
T Consensus 233 G~~~~l~~~~~~~~~~-~~SPDG---------------------------------------~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 233 GAVRQVASFPRHNGAP-AFSPDG---------------------------------------SKLAFALSKTGSLNLYVM 272 (429)
T ss_pred CCeEEccCCCCCcCCe-EECCCC---------------------------------------CEEEEEEcCCCCcEEEEE
Confidence 33232221111 1111 112221 23554432111 37777
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
++++... ..+. ..........+.+.++.|+++.... -.|+++++++...+.+.. ........++.
T Consensus 273 d~~tg~~---~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------~~~~~~~~~~S 339 (429)
T PRK03629 273 DLASGQI---RQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------EGSQNQDADVS 339 (429)
T ss_pred ECCCCCE---EEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------CCCCccCEEEC
Confidence 7766533 1121 1222445677788788886654332 389999998766555543 22234456777
Q ss_pred ccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEEEEe
Q psy5792 244 WIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 244 ~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~l~~ 318 (377)
+.++.|+++... ...|.+.++++...+.+.... .-....+.|....|+++... ....++..+++|...+.+..
T Consensus 340 pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 340 SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 767788776543 346888999887666555332 12345678888888887642 24568888999988877643
No 61
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0099 Score=58.82 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=116.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++++... ..+.... ......++.+.+.+|+++....+ .|+.+++++...+.+.. .-....
T Consensus 224 ~i~i~dl~~G~~---~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--------~~~~~~ 290 (429)
T PRK03629 224 ALVIQTLANGAV---RQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD--------GRSNNT 290 (429)
T ss_pred EEEEEECCCCCe---EEccCCC--CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC--------CCCCcC
Confidence 477777766533 2222222 22345678888889998754333 69999998765555443 222345
Q ss_pred eEEEeccCCeEEEEc-C-CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSD-P-KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd-~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++- . ...+|++.++++...+.+... .......++.|...+|+++... ....|+..++++...+.
T Consensus 291 ~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 567776677776653 3 234899999988765555432 2334567889988888887532 24578888998777666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
|.... .-...++.+.+..|+++... ....++.++++|...+++.
T Consensus 370 Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 370 LTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred eCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 55331 11134566777888887651 2345888899988777664
No 62
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.13 E-value=0.0056 Score=60.03 Aligned_cols=222 Identities=12% Similarity=0.112 Sum_probs=126.1
Q ss_pred CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEc-CCCCceEEEecCCC-ceeEEeeecC
Q psy5792 37 SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVN 109 (377)
Q Consensus 37 ~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~ 109 (377)
...|..+|.+|. .+++. .........++ .+.+|+|+.... ..|+.++ .+|+... +....+ ..... ++++
T Consensus 169 ~~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~-~spD 244 (417)
T TIGR02800 169 RYELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPA-FSPD 244 (417)
T ss_pred cceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceE-ECCC
Confidence 457999999998 77775 22222344445 667788876543 4677777 4443322 221111 11111 1221
Q ss_pred CCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC--CCeEEEEEcCCCCceeeEEEEecCCCCce
Q psy5792 110 SGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS--GYDIMGIKYNKNESKVTQVLGPLSKVSLA 187 (377)
Q Consensus 110 ~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~--~~~I~~~~l~~~~~~~~~~~~~~~~~~~~ 187 (377)
. ..|+++... ...|..+++++... ..+.. .....
T Consensus 245 g---------------------------------------~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~~--~~~~~ 280 (417)
T TIGR02800 245 G---------------------------------------SKLAVSLSKDGNPDIYVMDLDGKQL---TRLTN--GPGID 280 (417)
T ss_pred C---------------------------------------CEEEEEECCCCCccEEEEECCCCCE---EECCC--CCCCC
Confidence 1 134443321 12377777765533 11111 11112
Q ss_pred EEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCC--CEEEEEE
Q psy5792 188 AKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE--NVIEVAR 263 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~--~~I~~~~ 263 (377)
...++.+.+++|+++.... ..|+.+++++...+.+.. ........++.+.++.|+++.... .+|.+++
T Consensus 281 ~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~--------~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d 352 (417)
T TIGR02800 281 TEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF--------RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMD 352 (417)
T ss_pred CCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--------CCCCccCeEECCCCCEEEEEEccCCceEEEEEe
Confidence 2345666677888765433 379999998766555443 223455667777788888887653 4789999
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEEE
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTIL 316 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~l 316 (377)
+++...+.+... ......++.|..++|+++.... ...++....+|...+.+
T Consensus 353 ~~~~~~~~l~~~--~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 353 LDGGGERVLTDT--GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCCCeEEccCC--CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 988666555432 2234557888888898887532 34677777888665543
No 63
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.10 E-value=0.01 Score=58.20 Aligned_cols=183 Identities=11% Similarity=0.076 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++..... ..+.... ....+.++.+.++.|+++.... ..|+..++++...+.+.. ......
T Consensus 215 ~i~v~d~~~g~~---~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--------~~~~~~ 281 (417)
T TIGR02800 215 EIYVQDLATGQR---EKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--------GPGIDT 281 (417)
T ss_pred EEEEEECCCCCE---EEeecCC--CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--------CCCCCC
Confidence 477777765533 1222111 2344567777788898875433 479999988655444432 111122
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++... ...|++.++++...+.+... .......++.|...+|+++.... ..+|..+++++...+.
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~ 360 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV 360 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE
Confidence 34555556778776432 34799999987765544432 34456778999888999987532 3478899988766555
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeCCC--CeEEEEEccCCceEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSVGS--NVLESMDYSGGSKMQL 360 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~~~--~~i~~~~~~G~~~~~~ 360 (377)
+.... .....++.+.++.|+++.. .. ..++.++.+|...+.+
T Consensus 361 l~~~~--~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 361 LTDTG--LDESPSFAPNGRMILYATT-RGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred ccCCC--CCCCceECCCCCEEEEEEe-CCCcEEEEEEECCCceeeEC
Confidence 54321 2233456667788988877 43 3567777776544433
No 64
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.012 Score=58.04 Aligned_cols=185 Identities=10% Similarity=0.060 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|..+++++... ..+.... ......++.+.+++|+++-... ..|+.+++++...+.+.. ......
T Consensus 224 ~l~~~~l~~g~~---~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 290 (430)
T PRK00178 224 RIFVQNLDTGRR---EQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN--------HPAIDT 290 (430)
T ss_pred EEEEEECCCCCE---EEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc--------CCCCcC
Confidence 477788876533 2221111 2233567777788888765333 379999998766554433 122233
Q ss_pred eEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCC-CCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~-~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.||++... ...|++.++++...+.+... .......++.|...+|+++.... ...|+..++++...+.
T Consensus 291 ~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 44666667778776433 34799999877655444332 22234567889889999987432 3478999998877666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
+.... ......+.+.++.|+++... +...|+.++.+|...+.+.
T Consensus 370 lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 370 LTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 65432 22234677777888888651 3357999999987665553
No 65
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.06 E-value=0.012 Score=58.30 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+.... ....+.++.+.+++|+++-.. ...|+.+++++...+.+.. ......
T Consensus 221 ~I~~~dl~~g~~---~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 287 (427)
T PRK02889 221 VVYVHDLATGRR---RVVANFK--GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ--------SSGIDT 287 (427)
T ss_pred EEEEEECCCCCE---EEeecCC--CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC--------CCCCCc
Confidence 477788876533 1222122 234567788878888876433 3479999988766555432 122233
Q ss_pred eEEEeccCCeEEEEcC--CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEecCCCCeEE
Q psy5792 239 DIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGLDGKKQTI 315 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ldG~~~~~ 315 (377)
..++.+.++.|+++.. +...|++.++++...+.+...+ ......++.|...+|+++... ....|+..++++...+.
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA 366 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE
Confidence 4566666777777633 2457888888876544443221 223456889988898887632 23478999988776666
Q ss_pred EEecCCCCceEEEEeCCCCEEEEEEe-CCCCeEEEEEccCCceEEEE
Q psy5792 316 LAQEIIMPIKDITLDRKNKRVYWCYS-VGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 316 l~~~~~~~P~glalD~~~~~LYw~d~-~~~~~i~~~~~~G~~~~~~~ 361 (377)
+.... .....++.+.++.|+++-. .+...+..++.+|...+.+.
T Consensus 367 lt~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 367 LTDTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred ccCCC--CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 55432 2234577777888888764 13346888999987666664
No 66
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.03 E-value=0.0089 Score=54.94 Aligned_cols=224 Identities=16% Similarity=0.175 Sum_probs=127.8
Q ss_pred CCCCceEEEEEE-CCeEEEEcCCCCceEEEcCC-----CCc--eEEEec------CCC-ceeEEeeecCCCCcccCCCcC
Q psy5792 56 PDAAQVVAAVFY-KGRIIYSDANDGNIRSINLD-----GSN--STVLRN------NAG-ISDFILFSVNSGYDIMGIKYN 120 (377)
Q Consensus 56 ~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~-----g~~--~~~~~~------~~~-p~~i~v~~~~~~~~~~~~~C~ 120 (377)
+.+.+||||++. .+.++++|..++.....+.+ |.. +.+-.. ... |+|+.+...+.
T Consensus 20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~---------- 89 (336)
T TIGR03118 20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT---------- 89 (336)
T ss_pred ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------
Confidence 678899999995 78899999988888877744 322 111111 111 55554421110
Q ss_pred CCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc--CCCCceeeEEEEecCCC---CceEEEEEE--
Q psy5792 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY--NKNESKVTQVLGPLSKV---SLAAKVDFH-- 193 (377)
Q Consensus 121 ~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l--~~~~~~~~~~~~~~~~~---~~~~~l~~d-- 193 (377)
.-+...+. .++..||+.+.... |..-.. +.... +.....+... .--.|+++-
T Consensus 90 --------F~vt~~g~---------~~~a~Fif~tEdGT--isaW~p~v~~t~~--~~~~~~~d~s~~gavYkGLAi~~~ 148 (336)
T TIGR03118 90 --------FVVSGEGI---------TGPSRFLFVTEDGT--LSGWAPALGTTRM--TRAEIVVDASQQGNVYKGLAVGPT 148 (336)
T ss_pred --------eEEcCCCc---------ccceeEEEEeCCce--EEeecCcCCcccc--cccEEEEccCCCcceeeeeEEeec
Confidence 00000000 01234666665444 655442 22210 0111111111 112344443
Q ss_pred CCCCEEEEEEcCCCcEEEEEcCCCCcEEEEe-cccc-CCCCCCCCcceEEEeccCCeEEEEcC-------------CCCE
Q psy5792 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIE-YVET-GDPTPVDQFTDIAVDWIAQNIYWSDP-------------KENV 258 (377)
Q Consensus 194 ~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~-~~~~-~~~~~~~~p~~iavD~~~~~lYwtd~-------------~~~~ 258 (377)
...+.||-+|..+++|-+.+- +....... .... ..+.+. .|.+|..- .++||+|-. ..+-
T Consensus 149 ~~~~~LYaadF~~g~IDVFd~--~f~~~~~~g~F~DP~iPagy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~ 223 (336)
T TIGR03118 149 GGGDYLYAANFRQGRIDVFKG--SFRPPPLPGSFIDPALPAGY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGY 223 (336)
T ss_pred CCCceEEEeccCCCceEEecC--ccccccCCCCccCCCCCCCC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcce
Confidence 446899999999999987743 33322211 0000 001111 37777664 899999842 2368
Q ss_pred EEEEEcCCCeEEEEee-CCCCCceeEEEcCC-----CCeEEEEecCCCCeEEEEecC-CCCeEEE
Q psy5792 259 IEVARLTGQYRYVLIS-GGVDQPSALAVDPE-----SGYLFWSESGKIPLIARAGLD-GKKQTIL 316 (377)
Q Consensus 259 I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~-----~g~lywtd~g~~~~I~r~~ld-G~~~~~l 316 (377)
|-+++++|+..+.+.+ ..|..|+|||+-|. .|.|-+-+.| ..+|...+.. |...-.|
T Consensus 224 VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFG-DG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 224 VNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFG-DGTINAYDPQSGAQLGQL 287 (336)
T ss_pred EEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecC-CceeEEecCCCCceeeee
Confidence 9999999998876654 45999999999874 6899999988 5899999865 5543333
No 67
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.97 E-value=0.023 Score=56.19 Aligned_cols=188 Identities=7% Similarity=0.022 Sum_probs=114.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCC--CcEEEE--EcCC---CCcEEEEeccccCCCCC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH--GTISRT--HRDG---TGRENIIEYVETGDPTP 233 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~--~~I~~~--~~~G---~~~~~i~~~~~~~~~~~ 233 (377)
.|..+++++... ..+....+ ...+.++.+.+.+|.++.... ..|+.. ++++ ...+.+.. ..
T Consensus 212 ~I~~~~l~~g~~---~~lt~~~g--~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-------~~ 279 (428)
T PRK01029 212 KIFLGSLENPAG---KKILALQG--NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-------EA 279 (428)
T ss_pred eEEEEECCCCCc---eEeecCCC--CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-------CC
Confidence 488888887654 23332222 234567777788888876432 256654 3332 22333433 22
Q ss_pred CCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCC--CeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEec
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTG--QYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAGL 308 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~l 308 (377)
.......++.+.++.|+++... ..+|++.++++ ...+.+.. ........+..|...+|+++... ....|+..++
T Consensus 280 ~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 280 FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 2223445777767777776432 34788888864 22333322 22344567889988888887532 2468999999
Q ss_pred CCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe-CCCCeEEEEEccCCceEEEEe
Q psy5792 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS-VGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 309 dG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~-~~~~~i~~~~~~G~~~~~~~~ 362 (377)
++...+.+... -......+..+.++.|+++.. .....|+.++++|+..+.+..
T Consensus 359 ~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 359 ATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 88877776654 233455677767778887644 145689999999887776654
No 68
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=0.0017 Score=59.18 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=121.0
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE-EcCCCCEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW-SDPKENVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw-td~~~~~I~~~~ 263 (377)
.+..++.|++..+.||-+-...-.|..++++|...+++-- .+++.|++|++= +++.|. +|....++..+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-------~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-------TGFSDPETIEYI--GGNQFVIVDERDRALYLFT 156 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-------cccCChhHeEEe--cCCEEEEEehhcceEEEEE
Confidence 4588999999999999876666789999999988777766 688899999885 666665 577778888877
Q ss_pred cCCCeEEE--------EeeCC--CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec--------CCCCce
Q psy5792 264 LTGQYRYV--------LISGG--VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE--------IIMPIK 325 (377)
Q Consensus 264 ~~g~~~~~--------l~~~~--~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~--------~~~~P~ 325 (377)
++...... |-... -..-.|+|-||.++.+|++-....-+|+..+.+-+.-..-+.. .+....
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 76542211 11111 1234799999999999999875556888876543221111110 134567
Q ss_pred EEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEE
Q psy5792 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 326 glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~ 361 (377)
|+..|..++.|++... .++.+..++.+|.-+..+.
T Consensus 237 gl~~~~~~~~LLVLS~-ESr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 237 GLEFNAITNSLLVLSD-ESRRLLEVDLSGEVIELLS 271 (316)
T ss_pred cceecCCCCcEEEEec-CCceEEEEecCCCeeeeEE
Confidence 9999999999999999 9999999999987544443
No 69
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.88 E-value=0.009 Score=57.28 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=106.7
Q ss_pred eEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECC---------eEEEEcCCC--Cc--eEEEc-CCCCceEE
Q psy5792 29 FVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKG---------RIIYSDAND--GN--IRSIN-LDGSNSTV 93 (377)
Q Consensus 29 ~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~---------~ly~td~~~--~~--I~~~~-~~g~~~~~ 93 (377)
+|.-++- .+-+..+|++|+ ++.+- ...|..+++..+ -+..+|..+ ++ |++++ .+|.-..+
T Consensus 70 lIigTdK-~~GL~VYdL~Gk~lq~~~----~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 70 LIIGTDK-KGGLYVYDLDGKELQSLP----VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp EEEEEET-TTEEEEEETTS-EEEEE-----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred eEEEEeC-CCCEEEEcCCCcEEEeec----CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4444444 466999999999 77662 346776666222 245666543 23 56666 34432221
Q ss_pred ------EecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEE
Q psy5792 94 ------LRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIK 166 (377)
Q Consensus 94 ------~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~ 166 (377)
+..... |+|+++|+.... ..+..+..+..|.+..+.
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~-------------------------------------g~~ya~v~~k~G~~~Qy~ 187 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPST-------------------------------------GALYAFVNGKDGRVEQYE 187 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT---------------------------------------EEEEEEETTSEEEEEE
T ss_pred CCCCcccccccccceeeEEeecCCC-------------------------------------CcEEEEEecCCceEEEEE
Confidence 112333 788888875321 013333333445676666
Q ss_pred cC--CCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEeccccCCCCCC-CCcceEE
Q psy5792 167 YN--KNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYVETGDPTPV-DQFTDIA 241 (377)
Q Consensus 167 l~--~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~~~~~~~~~-~~p~~ia 241 (377)
+. +.+.-....+-.+...+.+.|+.+|...+.||+.+. ...|++...+ +.....++....+ ..+ ..++||+
T Consensus 188 L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g---~~l~aDvEGla 263 (381)
T PF02333_consen 188 LTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADG---DGLVADVEGLA 263 (381)
T ss_dssp EEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET-TTEEEEEESSCCC-S--EEEEEBSS---SSB-S-EEEEE
T ss_pred EEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC-ccEEEEEecCCCCCCcceeeecccc---cccccCccceE
Confidence 63 222100122223444568999999999999999995 5799999886 3333333321111 223 4589999
Q ss_pred Eec---cCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 242 VDW---IAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 242 vD~---~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
+=. -.+.|..+++..++..+.+..+..
T Consensus 264 ly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 264 LYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 832 246799999999999999988754
No 70
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.024 Score=56.04 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=128.0
Q ss_pred cccccCCCCeEEEEeCC----CCcEEEEEcCCc-EEEEEeCCCCCceEEEEE--ECCeEEEEcCCC--CceEEEcCCCCc
Q psy5792 20 STLKPQSGPFVYGVKTL----SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF--YKGRIIYSDAND--GNIRSINLDGSN 90 (377)
Q Consensus 20 ~~~~d~~~~~ly~~d~~----~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav--~~~~ly~td~~~--~~I~~~~~~g~~ 90 (377)
|.--...+...|+.... ..+|+..|.||. .+++. .........++ .+.+|.++...+ ..|+..+..+..
T Consensus 162 g~~g~f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 162 AIRGAFRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred CCCCccCCEEEEEEEEcCCCceEEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 33333333334666543 258888999999 77765 32333455566 566787765433 358777843322
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCC--eEEEEEc
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGY--DIMGIKY 167 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~--~I~~~~l 167 (377)
.+.+....+ .... .++|+. ..|+++....| .|..+++
T Consensus 240 ~~~l~~~~g~~~~~-~wSPDG---------------------------------------~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 240 RKVVASFRGHNGAP-AFSPDG---------------------------------------SRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred eEEEecCCCccCce-eECCCC---------------------------------------CEEEEEEecCCcEEEEEEEC
Confidence 222221111 1111 112221 23544432222 3566666
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcC--CCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEecc
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWI 245 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~--~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~ 245 (377)
++... ..+. .........++.+.+..|+++... .-.|+.++.++...+.+ . .. . ...++.+.
T Consensus 280 ~~~~~---~~lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-------~~-~--~~~~~SpD 343 (429)
T PRK01742 280 NGGTP---SQLT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-------GR-G--YSAQISAD 343 (429)
T ss_pred CCCCe---Eeec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-------CC-C--CCccCCCC
Confidence 55433 1111 122234567788878888876533 33788888876554433 2 11 1 23456666
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCC-eEEEEecCCCCeEEEE
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP-LIARAGLDGKKQTILA 317 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~-~I~r~~ldG~~~~~l~ 317 (377)
++.|+++.. ..|.+.++.+...+.+... . .-...++.|....|+++...... .++..+++|...+.+.
T Consensus 344 G~~ia~~~~--~~i~~~Dl~~g~~~~lt~~-~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 344 GKTLVMING--DNVVKQDLTSGSTEVLSST-F-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCEEEEEcC--CCEEEEECCCCCeEEecCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 777877754 4577788876654444332 2 23567789988888887643233 3455678898877764
No 71
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.79 E-value=0.037 Score=54.74 Aligned_cols=179 Identities=10% Similarity=0.117 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.|...++.+... ..+....+ .....++.+.+.+|+++....+ .|+.+++++...+.+.. .-....
T Consensus 229 ~i~i~dl~tg~~---~~l~~~~g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~--------~~~~~~ 295 (429)
T PRK01742 229 QLVVHDLRSGAR---KVVASFRG--HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS--------GAGNNT 295 (429)
T ss_pred EEEEEeCCCCce---EEEecCCC--ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc--------CCCCcC
Confidence 477778765533 22222222 2345778887888888753333 68888887765554433 222355
Q ss_pred eEEEeccCCeEEEEcC--CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 239 DIAVDWIAQNIYWSDP--KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~--~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
..++.+.+..|+++.. +..+|+..+.++...+.+ .... ...++.|.+.+|+++.. ..|.+.++.+...+.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING---DNVVKQDLTSGSTEVL 368 (429)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEe
Confidence 6777777777777643 344788888877655444 2211 34578888888888753 4677788776554444
Q ss_pred EecCCCCceEEEEeCCCCEEEEEEeC-CCCeEEEEEccCCceEEEE
Q psy5792 317 AQEIIMPIKDITLDRKNKRVYWCYSV-GSNVLESMDYSGGSKMQLK 361 (377)
Q Consensus 317 ~~~~~~~P~glalD~~~~~LYw~d~~-~~~~i~~~~~~G~~~~~~~ 361 (377)
... . .-...++.+.++.|+++... ....++.++.+|...+++.
T Consensus 369 t~~-~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 369 SST-F-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred cCC-C-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 332 1 12345677777788887541 2234555678887777664
No 72
>KOG4499|consensus
Probab=97.78 E-value=0.0059 Score=53.90 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEE--cCC---CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTH--RDG---TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~--~~G---~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~ 258 (377)
+.-+-|++.|.....+|+.|..+..|-..+ ..+ +++++++. .+...+.+-..|.|+++|- .|+||++-.+.++
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~d-lrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFD-LRKSQPFESLEPDGMTIDT-EGNLYVATFNGGT 234 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEE-eccCCCcCCCCCCcceEcc-CCcEEEEEecCcE
Confidence 334567788877899999999988995555 433 35677765 2222223334599999995 8999999999999
Q ss_pred EEEEEcCCCe
Q psy5792 259 IEVARLTGQY 268 (377)
Q Consensus 259 I~~~~~~g~~ 268 (377)
|++.++....
T Consensus 235 V~~~dp~tGK 244 (310)
T KOG4499|consen 235 VQKVDPTTGK 244 (310)
T ss_pred EEEECCCCCc
Confidence 9999986543
No 73
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.71 E-value=0.029 Score=56.93 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=85.5
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe---------EEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY---------RYVLISG--GVDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~---------~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
.+|+|+++.+.++.+|.++...+.+.+++..... +.+++.. -...|...++|+ +|+.|.|=.- .++|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~-dsqv 398 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFL-DSQI 398 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEee-ccee
Confidence 3699999999999999999999999999986522 2333332 134699999997 6889988754 4677
Q ss_pred EEEecC-------CCCeEEEEec-C-CCCc------eEEEEeCCCCEEEEEEeC-----------CCCeEEEEEccCCce
Q psy5792 304 ARAGLD-------GKKQTILAQE-I-IMPI------KDITLDRKNKRVYWCYSV-----------GSNVLESMDYSGGSK 357 (377)
Q Consensus 304 ~r~~ld-------G~~~~~l~~~-~-~~~P------~glalD~~~~~LYw~d~~-----------~~~~i~~~~~~G~~~ 357 (377)
-+.+++ |.....++.+ + -.+| .|=+.+..++.|+....- ....-+-+++.|...
T Consensus 399 ~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM 478 (635)
T PRK02888 399 VKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKM 478 (635)
T ss_pred EEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCee
Confidence 777765 3433334443 1 1223 333336666666654320 223455688886644
Q ss_pred EEEEecCCCCCcc
Q psy5792 358 MQLKLSSNIKNAL 370 (377)
Q Consensus 358 ~~~~~~~~~~~p~ 370 (377)
+.+.....+++|+
T Consensus 479 ~lv~d~p~~~EPH 491 (635)
T PRK02888 479 KLVHDGPTFAEPH 491 (635)
T ss_pred EEEecCCCCCCCc
Confidence 4444455577774
No 74
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.62 E-value=0.086 Score=52.14 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=79.6
Q ss_pred EEEEEECCCCEEEEEEcCCC--cEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEE
Q psy5792 188 AKVDFHAAEDYIYWVDIDHG--TISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEV 261 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~ 261 (377)
...++.+.+..|+++....+ .|+.+++++. ..+.+.. ........+..+.++.|+++... ...|.+
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--------~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v 355 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--------KYRNSSCPAWSPDGKKIAFCSVIKGVRQICV 355 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--------CCCCccceeECCCCCEEEEEEcCCCCcEEEE
Confidence 34567777787887654333 6888887642 2333322 22233455677777888887543 357999
Q ss_pred EEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEec-CCCCeEEEEecCCCCeEEEEe
Q psy5792 262 ARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES-GKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 262 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~-g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.++++...+.+... .......+..|....|+++.. .....|+..++++...+.+..
T Consensus 356 ~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 356 YDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred EECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 99998877666543 234567788887778887643 224689999999877766654
No 75
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.48 E-value=2.1e-05 Score=48.56 Aligned_cols=25 Identities=4% Similarity=-0.086 Sum_probs=21.3
Q ss_pred cCCCCCCceeccccCCCccc---cCCcC
Q psy5792 119 YNKNESKVQQVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 119 C~~~~g~Cs~~C~~~~~~~~---~~G~~ 143 (377)
|..+||+|+|+|++.++++. +.||.
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYK 28 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCE
Confidence 67789999999999999887 67753
No 76
>KOG4499|consensus
Probab=97.46 E-value=0.02 Score=50.63 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=61.5
Q ss_pred eCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe--cCC---CCeEEEEec------CCCCceEEEEeCCCCEEEEEEeC
Q psy5792 274 SGGVDQPSALAVDPESGYLFWSESGKIPLIARAG--LDG---KKQTILAQE------IIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 274 ~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~--ldG---~~~~~l~~~------~~~~P~glalD~~~~~LYw~d~~ 342 (377)
.+.+.-|.||+-|.....+|++|.- +..|...+ ..+ ++++++..- +-..|.|++||. ++.||++-.
T Consensus 154 ~~~v~IsNgl~Wd~d~K~fY~iDsl-n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~- 230 (310)
T KOG4499|consen 154 WNCVGISNGLAWDSDAKKFYYIDSL-NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATF- 230 (310)
T ss_pred ehhccCCccccccccCcEEEEEccC-ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEe-
Confidence 3446678999999999999999974 67885555 333 466666542 245699999995 899999999
Q ss_pred CCCeEEEEEccCCc
Q psy5792 343 GSNVLESMDYSGGS 356 (377)
Q Consensus 343 ~~~~i~~~~~~G~~ 356 (377)
..++|++++...+.
T Consensus 231 ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGK 244 (310)
T ss_pred cCcEEEEECCCCCc
Confidence 99999999988553
No 77
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.083 Score=51.10 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCE------EEEEEc---------------CCC------eEEEEe-----eCCCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENV------IEVARL---------------TGQ------YRYVLI-----SGGVDQ 279 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~------I~~~~~---------------~g~------~~~~l~-----~~~~~~ 279 (377)
-++.+|.|++.++.++.||.++..... +.+... +|. ....+. .....-
T Consensus 236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~A 315 (399)
T COG2133 236 YGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIA 315 (399)
T ss_pred eccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccc
Confidence 478889999999999999999887521 111111 111 111111 011233
Q ss_pred ceeEEEcCC------CCeEEEEecCCCCeEEEEecCCCCeE---EEEecC-CCCceEEEEeCCCCEEEEEEeCC-CCeEE
Q psy5792 280 PSALAVDPE------SGYLFWSESGKIPLIARAGLDGKKQT---ILAQEI-IMPIKDITLDRKNKRVYWCYSVG-SNVLE 348 (377)
Q Consensus 280 P~~iavdp~------~g~lywtd~g~~~~I~r~~ldG~~~~---~l~~~~-~~~P~glalD~~~~~LYw~d~~~-~~~i~ 348 (377)
|.||++-.- ++.+|++..+ .-.+.+.+.+|..+. ..+..+ -..|.+++++ ..+-||+++. . .++|.
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hg-sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D-~~~g~i~ 392 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHG-SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTD-QGDGRIL 392 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeec-ceeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeec-CCCCeEE
Confidence 578888521 2688998876 346777888887333 333321 2589999998 4688888888 6 66999
Q ss_pred EEEccC
Q psy5792 349 SMDYSG 354 (377)
Q Consensus 349 ~~~~~G 354 (377)
|+.+.+
T Consensus 393 Rv~~~~ 398 (399)
T COG2133 393 RVSYAG 398 (399)
T ss_pred EecCCC
Confidence 998875
No 78
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.40 E-value=0.088 Score=46.90 Aligned_cols=179 Identities=14% Similarity=0.059 Sum_probs=106.1
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcc
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFT 238 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~ 238 (377)
.+.|...++..... ...+ . .....+..+.+.+. +.++++....+.|...++.......... .....+.
T Consensus 72 ~~~i~i~~~~~~~~--~~~~-~-~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~i~ 139 (289)
T cd00200 72 DKTIRLWDLETGEC--VRTL-T-GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLR-------GHTDWVN 139 (289)
T ss_pred CCeEEEEEcCcccc--eEEE-e-ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEec-------cCCCcEE
Confidence 34577777765322 1111 1 12235778888875 4566665557888888887322222222 2233578
Q ss_pred eEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEe
Q psy5792 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQ 318 (377)
Q Consensus 239 ~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~ 318 (377)
.+++++. +.++.+....+.|.+.++........+......+..++++|.+..++.+.. ...|...++..........
T Consensus 140 ~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 140 SVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred EEEEcCc-CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecchh
Confidence 8899865 444445445678999988744333333333446789999986667777753 4677777776433322221
Q ss_pred cCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 319 EIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 319 ~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
.....+..+++++. +.++.+.. ..+.|...++..
T Consensus 217 ~~~~~i~~~~~~~~-~~~~~~~~-~~~~i~i~~~~~ 250 (289)
T cd00200 217 GHENGVNSVAFSPD-GYLLASGS-EDGTIRVWDLRT 250 (289)
T ss_pred hcCCceEEEEEcCC-CcEEEEEc-CCCcEEEEEcCC
Confidence 21236678888755 56666655 577788777763
No 79
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.27 E-value=0.00091 Score=38.87 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=24.4
Q ss_pred CCCceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 321 IMPIKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 321 ~~~P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
+..|.||++| .++.||++|. ++++|..
T Consensus 1 f~~P~gvav~-~~g~i~VaD~-~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADS-GNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEEC-CCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEEC-CCCEEEE
Confidence 4689999999 8999999999 9999875
No 80
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.27 E-value=0.00065 Score=39.48 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.2
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
..|.|||+| .+++||++|..+++|.++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 469999999 689999999999999864
No 81
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.18 Score=46.26 Aligned_cols=211 Identities=14% Similarity=0.142 Sum_probs=114.1
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCc--
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGI-- 100 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p-- 100 (377)
+.++.|++|-.++ |+.+|...- .+.+-+........++.+.+++.|++|+.+ .+..+| .+-+.+.+......|
T Consensus 95 se~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 95 SEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred cccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccC-cEEEEECCCCCCceeeeeeccCCC
Confidence 4568999986655 777776555 444422233355788899999999999954 456667 555554443321112
Q ss_pred --eeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEE
Q psy5792 101 --SDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178 (377)
Q Consensus 101 --~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~ 178 (377)
..+++.. ...+++..++ -+.-++...... .++
T Consensus 173 d~~~v~ISG------------------------------------------n~AYvA~~d~-GL~ivDVSnp~s---Pvl 206 (370)
T COG5276 173 DTHDVAISG------------------------------------------NYAYVAWRDG-GLTIVDVSNPHS---PVL 206 (370)
T ss_pred CceeEEEec------------------------------------------CeEEEEEeCC-CeEEEEccCCCC---CeE
Confidence 1222200 1233332221 044444433221 111
Q ss_pred EecCCCC-ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCCCCCCCcceE---EEeccCCeEEEEc
Q psy5792 179 GPLSKVS-LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDPTPVDQFTDI---AVDWIAQNIYWSD 253 (377)
Q Consensus 179 ~~~~~~~-~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~~~p~~i---avD~~~~~lYwtd 253 (377)
..--+.+ ...++.. ..++.|.++... .+.-.+.++-. ...+-. -+...|.++ +|- ....|++|
T Consensus 207 i~~~n~g~g~~sv~v--sdnr~y~vvy~e-gvlivd~s~~ssp~~~gs-------yet~~p~~~s~v~Vs--~~~~Yvad 274 (370)
T COG5276 207 IGSYNTGPGTYSVSV--SDNRAYLVVYDE-GVLIVDVSGPSSPTVFGS-------YETSNPVSISTVPVS--GEYAYVAD 274 (370)
T ss_pred EEEEecCCceEEEEe--cCCeeEEEEccc-ceEEEecCCCCCceEeec-------cccCCcccccceecc--cceeeeec
Confidence 1111111 2333333 378888888654 44456666533 233322 233345555 554 78899998
Q ss_pred CCCC--EEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC
Q psy5792 254 PKEN--VIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 254 ~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g 298 (377)
...+ .|-..++.+.+..-=+.....+-++|++ ..+++|++|..
T Consensus 275 ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn 319 (370)
T COG5276 275 GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN 319 (370)
T ss_pred cccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeEeccCC
Confidence 7654 5666676666543333333446788888 68999999964
No 82
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.15 E-value=0.19 Score=45.81 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=115.0
Q ss_pred EEEEEeCCCC--eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 151 FILFSVNSGY--DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 151 ~l~~s~~~~~--~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
.|+-+.+.-| .|++++++.... ....++...--..|+++- +++||..-+..+..+..+.+.-....-+.
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~---~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~---- 127 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKV---LQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP---- 127 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSE---EEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE----
T ss_pred EEEEeCCCCCcEEEEEEECCCCcE---EEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe----
Confidence 4666654433 588998887644 233445544446677776 89999999999999999997422222222
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EE-EEee-CC--CCCceeEEEcCCCCeEEEEecCCCCeE
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RY-VLIS-GG--VDQPSALAVDPESGYLFWSESGKIPLI 303 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~-~l~~-~~--~~~P~~iavdp~~g~lywtd~g~~~~I 303 (377)
--++-+||+-| +..||.+|.. .+|...++..-. .+ +-+. .+ ...-+.+.. .+|.||=--|. ...|
T Consensus 128 ----y~~EGWGLt~d--g~~Li~SDGS-~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~-td~I 197 (264)
T PF05096_consen 128 ----YPGEGWGLTSD--GKRLIMSDGS-SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQ-TDRI 197 (264)
T ss_dssp -----SSS--EEEEC--SSCEEEE-SS-SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETT-SSEE
T ss_pred ----cCCcceEEEcC--CCEEEEECCc-cceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCC-CCeE
Confidence 23578999988 7889999884 688888886532 22 2222 21 233344544 48999888885 7999
Q ss_pred EEEecCCCCeEEEEec-C--------------CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 304 ARAGLDGKKQTILAQE-I--------------IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 304 ~r~~ldG~~~~~l~~~-~--------------~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.+++..-....-.+.- . ..-.||||.|+.++++|++-. .=.+++.+.+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK-~Wp~lyeV~l~ 261 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK-LWPKLYEVKLV 261 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET-T-SEEEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC-CCCceEEEEEE
Confidence 9999875554443321 1 123799999999999999988 77788888765
No 83
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.10 E-value=0.29 Score=47.09 Aligned_cols=122 Identities=20% Similarity=0.227 Sum_probs=76.3
Q ss_pred CCCCCcceEEE--eccCCeEEEE-cCCCCEEEEEEcC----CCeEEEEeeC--CCCCceeEEEcCCCCeEEEEecCCCCe
Q psy5792 232 TPVDQFTDIAV--DWIAQNIYWS-DPKENVIEVARLT----GQYRYVLISG--GVDQPSALAVDPESGYLFWSESGKIPL 302 (377)
Q Consensus 232 ~~~~~p~~iav--D~~~~~lYwt-d~~~~~I~~~~~~----g~~~~~l~~~--~~~~P~~iavdp~~g~lywtd~g~~~~ 302 (377)
..+..|+|+++ ++.++.+|.. ....+++....+. |.....++.. -..+|.|+++|...|+||+.+. ..-
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE--~~G 230 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE--DVG 230 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET--TTE
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC--ccE
Confidence 45667999997 4456666654 3344677665552 3333333332 2358999999999999999996 479
Q ss_pred EEEEecCC---CCeEEEEec---CC-CCceEEEEeC---CCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 303 IARAGLDG---KKQTILAQE---II-MPIKDITLDR---KNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 303 I~r~~ldG---~~~~~l~~~---~~-~~P~glalD~---~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
|++...+. ..++.+... .+ .-.-||+|-+ ..+.|..++. +.++....+..|.+
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ-G~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ-GDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG-GGTEEEEEESSTT-
T ss_pred EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC-CCCeEEEEecCCCC
Confidence 99998873 334444221 12 3577999943 2467889999 88888888888753
No 84
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.09 E-value=0.099 Score=48.24 Aligned_cols=183 Identities=9% Similarity=0.023 Sum_probs=110.0
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-----CCCcEEEEeccccCCCCCCCCcceEEEeccCCe--------
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-----GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN-------- 248 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-----G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~-------- 248 (377)
.++.++-||++.+ .+.++++|..++.....+.+ |.....++.............|.|+.+......
T Consensus 20 p~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 3567899999998 67888899888877666666 433333333111111122346999998743321
Q ss_pred -----EEEEcCCCCEEEEEEcCC--C---eEEEEeeCC--CCCceeEEEcCC--CCeEEEEecCCCCeEEEEecCCCCeE
Q psy5792 249 -----IYWSDPKENVIEVARLTG--Q---YRYVLISGG--VDQPSALAVDPE--SGYLFWSESGKIPLIARAGLDGKKQT 314 (377)
Q Consensus 249 -----lYwtd~~~~~I~~~~~~g--~---~~~~l~~~~--~~~P~~iavdp~--~g~lywtd~g~~~~I~r~~ldG~~~~ 314 (377)
||.|+. ++|..-++.- . ...++++.. ...-+|+||-.. ..+||-+|.. +.+|...+ ++..+
T Consensus 99 ~~a~Fif~tEd--GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd--~~f~~ 173 (336)
T TIGR03118 99 GPSRFLFVTED--GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK--GSFRP 173 (336)
T ss_pred cceeEEEEeCC--ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec--Ccccc
Confidence 333333 4455444321 1 111333321 333477887643 6799999985 78998774 33222
Q ss_pred EEEecC--------CCCceEEEEeCCCCEEEEEEeC------------CCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 315 ILAQEI--------IMPIKDITLDRKNKRVYWCYSV------------GSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 315 ~l~~~~--------~~~P~glalD~~~~~LYw~d~~------------~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.-+... -.-|.+|.- .+++||++=.. +.+.|...+.+|.-.+++.++..++.|.+.
T Consensus 174 ~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 174 PPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred ccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCcee
Confidence 211111 134677765 57999998331 346899999999888888877889998764
No 85
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.88 E-value=0.41 Score=45.20 Aligned_cols=268 Identities=10% Similarity=0.076 Sum_probs=132.1
Q ss_pred eEeeccccCCCC-----cCCccccccCCCCeEEEEeCC---------CCcEEEEEcCCc-EEE-E-EeCC----CCCce-
Q psy5792 4 LHVLPYTRNPSF-----GAVASTLKPQSGPFVYGVKTL---------SHSLHYVNIEVK-VAK-V-VSMP----DAAQV- 61 (377)
Q Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~d~~~~~ly~~d~~---------~~~I~~~~~dG~-~~~-i-~~~~----~~~~p- 61 (377)
+||.|-.....+ ++-..++++++++.+|.+++. ++.|...|...- .+. | +... .+..+
T Consensus 19 v~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~ 98 (342)
T PF06433_consen 19 VYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKN 98 (342)
T ss_dssp EEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GG
T ss_pred EEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheeccccc
Confidence 455554444433 244457788889999998774 456667777777 222 2 2110 11222
Q ss_pred -EEEEEECCeEEEEcCCC-CceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 62 -VAAVFYKGRIIYSDAND-GNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 62 -~~lav~~~~ly~td~~~-~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
++|...+.++|+.+..- .+|.++| ..++....+.. | +|.++-=..+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---P------------------------GC~~iyP~~~~--- 148 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---P------------------------GCWLIYPSGNR--- 148 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---T------------------------SEEEEEEEETT---
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC---C------------------------CEEEEEecCCC---
Confidence 33334777888888655 5677777 33433333321 2 44443211111
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEE-ecCCCCceE--EEEEECCCCEEEEEEcCCCcEEEEEcC
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLG-PLSKVSLAA--KVDFHAAEDYIYWVDIDHGTISRTHRD 215 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~-~~~~~~~~~--~l~~d~~~~~ly~sd~~~~~I~~~~~~ 215 (377)
.|...... |++..+.++..+... +... .+.....|. .-++...++++||... .|.|+.+++.
T Consensus 149 -----------~F~~lC~D--Gsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dls 213 (342)
T PF06433_consen 149 -----------GFSMLCGD--GSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLS 213 (342)
T ss_dssp -----------EEEEEETT--SCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEET
T ss_pred -----------ceEEEecC--CceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEec-CCEEEEEecc
Confidence 12222222 237777776444321 1111 112222221 2234455788999874 6899999998
Q ss_pred CCCcEEEEeccccC-C-CCCCCCcce---EEEeccCCeEEEEcCC----C-----CEEEEEEcCCCeEEEEee-------
Q psy5792 216 GTGRENIIEYVETG-D-PTPVDQFTD---IAVDWIAQNIYWSDPK----E-----NVIEVARLTGQYRYVLIS------- 274 (377)
Q Consensus 216 G~~~~~i~~~~~~~-~-~~~~~~p~~---iavD~~~~~lYwtd~~----~-----~~I~~~~~~g~~~~~l~~------- 274 (377)
|...+..-.-+... . ...--+|-| +|++...++||+.... + ..|+++++..+.|..-+.
T Consensus 214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~S 293 (342)
T PF06433_consen 214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDS 293 (342)
T ss_dssp TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESE
T ss_pred CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccce
Confidence 87644332200000 0 001112443 8999889999997432 1 268888888765432211
Q ss_pred ---CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 275 ---GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 275 ---~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
+....|.=++++..++.|++-|..+...+.++.-=|...+.+
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGETPTLI 338 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SSS--EE
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCCCceEE
Confidence 124566666666656677777754333333343334444443
No 86
>KOG1446|consensus
Probab=96.73 E-value=0.47 Score=43.66 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=148.3
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLS 134 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~ 134 (377)
....+.+|.+ ..+..-.+...+..|+..+ .+|+..+++.+.-- ||+..|....
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-------------------------G~~~~~Fth~ 67 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-------------------------GVDLACFTHH 67 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-------------------------cccEEEEecC
Confidence 3556788888 5555666666677888899 88988777764211 2333332221
Q ss_pred CccccCCcCCCcCCCcEEEEEeC-CCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 135 KVSLAAKVDFHAGISDFILFSVN-SGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 135 ~~~~~~G~~~C~~~~~~l~~s~~-~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
.. .++.+.. ....||-+++..... +-.+.+ -..+..++..+.+ ..|.+....+.|+-.
T Consensus 68 ~~--------------~~i~sStk~d~tIryLsl~dNky-----lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLW 127 (311)
T KOG1446|consen 68 SN--------------TVIHSSTKEDDTIRYLSLHDNKY-----LRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLW 127 (311)
T ss_pred Cc--------------eEEEccCCCCCceEEEEeecCce-----EEEcCCCCceEEEEEecCCC-CeEEecccCCeEEee
Confidence 11 2333332 122377777765533 112222 2347788888866 778888788899988
Q ss_pred EcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC----CCeEEEEee-CCCCCceeEEEcC
Q psy5792 213 HRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT----GQYRYVLIS-GGVDQPSALAVDP 287 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~----g~~~~~l~~-~~~~~P~~iavdp 287 (377)
++.-..-+.+.. +..+.-.|+|+ .|.+|.+-.+...|...++. |.+..-.+. ....+=..|...|
T Consensus 128 DlR~~~cqg~l~---------~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 128 DLRVKKCQGLLN---------LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP 197 (311)
T ss_pred EecCCCCceEEe---------cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC
Confidence 888555555543 44566789996 57666666666688888874 334433333 3355567889998
Q ss_pred CCCeEEEEecCCCCeEEEEe-cCCCCeEEEEec--CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEE
Q psy5792 288 ESGYLFWSESGKIPLIARAG-LDGKKQTILAQE--IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~-ldG~~~~~l~~~--~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~ 360 (377)
.+.+|-.+.. .+.|+..+ .+|+-...+-.. ...-|-+-+.-++++.+.- -. ..++|..-+++.+.....
T Consensus 198 dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~-gs-~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 198 DGKSILLSTN--ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLS-GS-DDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCEEEEEeC--CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEE-ec-CCCcEEEEEcCCCcEeeE
Confidence 8888888874 46676664 678755544332 1223434444454444444 44 567888888875544333
No 87
>KOG0291|consensus
Probab=96.64 E-value=1 Score=46.34 Aligned_cols=145 Identities=15% Similarity=0.055 Sum_probs=94.4
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~ 227 (377)
+..++.+..+.|+|+.-+...+-. .+.--+..+...++.|... ++..++..-.|+|+..++. ..+.+++..
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC----~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTft~--- 432 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFC----FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTFTS--- 432 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceE----EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeeecC---
Confidence 344666666666777776655422 1111233456788888874 4555555567888888875 334455554
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
..-.+-..+|+|+.+..+.-.....-.|.+-++......-++++ -..| .+|+++|.+..|+=..|...-+|+-+
T Consensus 433 ----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 433 ----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 33345678999986666655566666899999876665555554 3445 78999999999998888645555554
No 88
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.14 Score=49.60 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=50.5
Q ss_pred eEEEEEECC------CCEEEEEEcCCCcEEEEEcCCC---CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC-C
Q psy5792 187 AAKVDFHAA------EDYIYWVDIDHGTISRTHRDGT---GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK-E 256 (377)
Q Consensus 187 ~~~l~~d~~------~~~ly~sd~~~~~I~~~~~~G~---~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~-~ 256 (377)
|.|++|-.. .+.+|+.-..+-.+.+.+++|. ..+.++.. ..-++|.++++++ .+.||+++.. +
T Consensus 316 psGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~------d~~gR~~dV~v~~-DGallv~~D~~~ 388 (399)
T COG2133 316 PSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG------DLGGRPRDVAVAP-DGALLVLTDQGD 388 (399)
T ss_pred cceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec------CCCCcccceEECC-CCeEEEeecCCC
Confidence 455665532 2788888877777888999886 22333330 1226899999996 6788888766 6
Q ss_pred CEEEEEEcCC
Q psy5792 257 NVIEVARLTG 266 (377)
Q Consensus 257 ~~I~~~~~~g 266 (377)
++|.|.+..+
T Consensus 389 g~i~Rv~~~~ 398 (399)
T COG2133 389 GRILRVSYAG 398 (399)
T ss_pred CeEEEecCCC
Confidence 7999988765
No 89
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.39 E-value=0.85 Score=42.54 Aligned_cols=201 Identities=10% Similarity=0.011 Sum_probs=120.5
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEc----------CCCCcE
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR----------DGTGRE 220 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~----------~G~~~~ 220 (377)
.|.++....|++..+..++.+. .-+....+.++.|++.. .+.||.+.. ..|+++.. .+....
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~----l~~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~ 90 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGE----LDVFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDR 90 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCc----EEEEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCe
Confidence 3666766666687777664432 11223456789999887 789999864 47776621 111111
Q ss_pred EEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--------EEeeCCCCCceeEEEcCCCCeE
Q psy5792 221 NIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--------VLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 221 ~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--------~l~~~~~~~P~~iavdp~~g~l 292 (377)
..+. .....++--....||++ ++.+++.+.....+...+.+-++.. .+...+--+-+|+|++. ..--
T Consensus 91 ~yvP--r~~~~TGdidiHdia~~--~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~ 165 (335)
T TIGR03032 91 LYVP--RASYVTGDIDAHDLALG--AGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPR 165 (335)
T ss_pred EEee--eeeeeccCcchhheeec--CCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEE
Confidence 1110 00000233347788884 7889999998888888888776532 22233344668999973 5566
Q ss_pred EEEecCC--CCeEEEEec-CCC------CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEec
Q psy5792 293 FWSESGK--IPLIARAGL-DGK------KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLS 363 (377)
Q Consensus 293 ywtd~g~--~~~I~r~~l-dG~------~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~ 363 (377)
|+|-.+. .+.=+|-+. +|. ..+++++ ++..|.+--. .+++||++|. ..+.+.+++.+.|....+..-
T Consensus 166 yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~-GLsmPhSPRW--hdgrLwvlds-gtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 166 YVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS-GLSMPHSPRW--YQGKLWLLNS-GRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred EEEEeeccCCcccccccccCCeEEEEeCCCCEEEc-CccCCcCCcE--eCCeEEEEEC-CCCEEEEEcCCCCcEEEEEEC
Confidence 6675442 234444432 222 1223333 3667766666 5799999999 999999999985555555543
Q ss_pred CCCCC
Q psy5792 364 SNIKN 368 (377)
Q Consensus 364 ~~~~~ 368 (377)
...+.
T Consensus 242 pG~~r 246 (335)
T TIGR03032 242 PGFTR 246 (335)
T ss_pred CCCCc
Confidence 33433
No 90
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.36 E-value=0.19 Score=51.18 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=91.7
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe--ccCCeEE-----------------EEcCCC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD--WIAQNIY-----------------WSDPKE 256 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD--~~~~~lY-----------------wtd~~~ 256 (377)
+++||+-|..+.+|-|++++--....|+.. .+.....|+++. +.++++| .++...
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~i------Pn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~ 214 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITEL------PNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYR 214 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeC------CCccCccccCccccCCccEEEeCcccccccCCCCCEeeccccee
Confidence 889999999999999999985444444431 344456666665 3344443 232233
Q ss_pred CEEEEEEcCCCeE--EEEeeCCCCCceeEEEcCCCCeEEEEecCC--CC-----------eEEEEe--------------
Q psy5792 257 NVIEVARLTGQYR--YVLISGGVDQPSALAVDPESGYLFWSESGK--IP-----------LIARAG-------------- 307 (377)
Q Consensus 257 ~~I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~lywtd~g~--~~-----------~I~r~~-------------- 307 (377)
+.+.+++.+.... ++++ ..+|+.++++|..+++|++...+ .. .+..++
T Consensus 215 ~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred EEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 4555665553221 1222 23799999999999999995211 00 111111
Q ss_pred ---------cCCCC-------eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 308 ---------LDGKK-------QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 308 ---------ldG~~-------~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
+|+.. ....+.. -..|.|+++.+.++++|.+.. ..+.+..+++.-
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank-lS~tVSVIDv~k 352 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK-LSPTVTVIDVRK 352 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC-CCCcEEEEEChh
Confidence 11211 1111222 357999999999999999999 999999999873
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.36 E-value=0.78 Score=41.86 Aligned_cols=197 Identities=11% Similarity=0.029 Sum_probs=112.2
Q ss_pred ccccccCCCCeEEEEeCC--CCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEEE
Q psy5792 19 ASTLKPQSGPFVYGVKTL--SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVL 94 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~--~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~~ 94 (377)
-|+.++. ++.||-.-.. ...|+++++++. ...-...+.----.||++.+|+||.--|..+.....| .+-+....+
T Consensus 48 QGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 48 QGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 3666632 3577776654 458999999876 3322222333456889999999999999999999999 455555555
Q ss_pred ecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCcee
Q psy5792 95 RNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKV 174 (377)
Q Consensus 95 ~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~ 174 (377)
....+-=|++- . ...|+.++++. .|+.++...-..
T Consensus 127 ~y~~EGWGLt~--d----------------------------------------g~~Li~SDGS~-~L~~~dP~~f~~-- 161 (264)
T PF05096_consen 127 PYPGEGWGLTS--D----------------------------------------GKRLIMSDGSS-RLYFLDPETFKE-- 161 (264)
T ss_dssp E-SSS--EEEE--C----------------------------------------SSCEEEE-SSS-EEEEE-TTT-SE--
T ss_pred ecCCcceEEEc--C----------------------------------------CCEEEEECCcc-ceEEECCcccce--
Confidence 43322333331 1 12477777654 466555432211
Q ss_pred eEEEEecCCCCc----eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC-----C---CCCCCcceEEE
Q psy5792 175 TQVLGPLSKVSL----AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD-----P---TPVDQFTDIAV 242 (377)
Q Consensus 175 ~~~~~~~~~~~~----~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~-----~---~~~~~p~~iav 242 (377)
.. .+.+...+. .--+.+- ++.||---..+..|.++++........+....... . ....-.+|||.
T Consensus 162 ~~-~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 162 VR-TIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EE-EEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EE-EEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 11 111121122 2223333 78887666678899999998655555443211100 0 11233789999
Q ss_pred eccCCeEEEEcCCCCEEEEEEc
Q psy5792 243 DWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 243 D~~~~~lYwtd~~~~~I~~~~~ 264 (377)
|+.++++|+|-+.=.+++...+
T Consensus 239 d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 239 DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp ETTTTEEEEEETT-SEEEEEEE
T ss_pred eCCCCEEEEEeCCCCceEEEEE
Confidence 9999999999887677776654
No 92
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.22 E-value=0.93 Score=43.07 Aligned_cols=116 Identities=19% Similarity=0.083 Sum_probs=75.2
Q ss_pred CcceEEEeccCCeEEEEcCCC------CEEEEEEcCCCeEEEE-eeCC-------------CCCceeEEEcCCCCeEEEE
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKE------NVIEVARLTGQYRYVL-ISGG-------------VDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~------~~I~~~~~~g~~~~~l-~~~~-------------~~~P~~iavdp~~g~lywt 295 (377)
.+++|++ ..++.+||++... .+|.+++++|...+.+ +-.. =....+||+.|.+..||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5889999 4689999999999 9999999999875443 2111 1236899999977768877
Q ss_pred ecCC-------C-------CeEEEEecC--CC-CeEEEEecC-------CCCceEEEEeCCCCEEEEEEeCC-------C
Q psy5792 296 ESGK-------I-------PLIARAGLD--GK-KQTILAQEI-------IMPIKDITLDRKNKRVYWCYSVG-------S 344 (377)
Q Consensus 296 d~g~-------~-------~~I~r~~ld--G~-~~~~l~~~~-------~~~P~glalD~~~~~LYw~d~~~-------~ 344 (377)
-... . .+|.+.+.. |. ..+..+.-+ -..+..++.. .+++|++.+. . .
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER-~~~~~~~~~ 242 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLER-DFSPGTGNY 242 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEc-cCCCCccce
Confidence 5321 1 355666554 21 122222211 2345555553 4677999888 5 4
Q ss_pred CeEEEEEccC
Q psy5792 345 NVLESMDYSG 354 (377)
Q Consensus 345 ~~i~~~~~~G 354 (377)
.+|+.+++.+
T Consensus 243 ~ri~~v~l~~ 252 (326)
T PF13449_consen 243 KRIYRVDLSD 252 (326)
T ss_pred EEEEEEEccc
Confidence 5777787764
No 93
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.17 E-value=1.1 Score=41.76 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=81.2
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc----EEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC---EE
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR----ENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN---VI 259 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~----~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~---~I 259 (377)
++.+++ .++.+++.+..-.-+..++..-+.. ..+++.. .+++-=+-+|||++ .++--|+|--+.. .=
T Consensus 105 iHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~l---a~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~g 178 (335)
T TIGR03032 105 AHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKL---APEDRCHLNGMALD-DGEPRYVTALSQSDVADG 178 (335)
T ss_pred hhheee--cCCcEEEEECcceeEEEECCCCccccccCCcccccc---CccCceeecceeee-CCeEEEEEEeeccCCccc
Confidence 445555 3677888876666666666655431 1223210 01333357899998 3455666632210 00
Q ss_pred ---------EEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEe
Q psy5792 260 ---------EVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330 (377)
Q Consensus 260 ---------~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD 330 (377)
.+++.... +++++ ++..|++--. .+|+||+.|++ .+.+.+++.+....+.+..- -+.|.||+..
T Consensus 179 WR~~~~~gG~vidv~s~--evl~~-GLsmPhSPRW--hdgrLwvldsg-tGev~~vD~~~G~~e~Va~v-pG~~rGL~f~ 251 (335)
T TIGR03032 179 WREGRRDGGCVIDIPSG--EVVAS-GLSMPHSPRW--YQGKLWLLNSG-RGELGYVDPQAGKFQPVAFL-PGFTRGLAFA 251 (335)
T ss_pred ccccccCCeEEEEeCCC--CEEEc-CccCCcCCcE--eCCeEEEEECC-CCEEEEEcCCCCcEEEEEEC-CCCCccccee
Confidence 11222222 23444 6888888877 48999999997 69999999983333444443 4789999985
Q ss_pred CCCCEEEEE
Q psy5792 331 RKNKRVYWC 339 (377)
Q Consensus 331 ~~~~~LYw~ 339 (377)
+..+++.
T Consensus 252 --G~llvVg 258 (335)
T TIGR03032 252 --GDFAFVG 258 (335)
T ss_pred --CCEEEEE
Confidence 5555554
No 94
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.95 E-value=1.9 Score=42.54 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=64.0
Q ss_pred EECCCCEEEEEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCE--EEEEEcCCC
Q psy5792 192 FHAAEDYIYWVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV--IEVARLTGQ 267 (377)
Q Consensus 192 ~d~~~~~ly~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~--I~~~~~~g~ 267 (377)
+.+.+.+|+++....| .|++++++|+..+.+.. .......-.+.+.+..|-+.....+. |...++...
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 4555788887755444 89999999987655554 22211112233334555444433333 666665433
Q ss_pred e-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEE
Q psy5792 268 Y-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 268 ~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l 316 (377)
. .+.+......++...+.+. +..+|....+..+.+.-...+|.....+
T Consensus 361 ~~~~~lt~~~~~e~ps~~~ng-~~i~~~s~~~~~~~l~~~s~~g~~~~~~ 409 (425)
T COG0823 361 GKIRILTSTYLNESPSWAPNG-RMIMFSSGQGGGSVLSLVSLDGRVSRPL 409 (425)
T ss_pred CcEEEccccccCCCCCcCCCC-ceEEEeccCCCCceEEEeeccceeEEEE
Confidence 3 4455444455566666652 4455555554456677777777666533
No 95
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.84 E-value=2 Score=41.99 Aligned_cols=103 Identities=9% Similarity=0.102 Sum_probs=67.8
Q ss_pred EEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEE
Q psy5792 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~gla 328 (377)
+-........+.+.+.+|...+.+.. ++....++++++...++-+++ +...|+.++++..+.+.+-...-.-..+++
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~ 450 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD 450 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence 33444444589999999988766655 588899999999767788886 357999999998888777665545556666
Q ss_pred EeCCCCEEEEEEe--CCCCeEEEEEccC
Q psy5792 329 LDRKNKRVYWCYS--VGSNVLESMDYSG 354 (377)
Q Consensus 329 lD~~~~~LYw~d~--~~~~~i~~~~~~G 354 (377)
+.+..+.+-++=. .....|.-.+.+|
T Consensus 451 ~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 451 WHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred EcCCceeEEEecCcceeeeeEEEEecCC
Confidence 6544444333211 0223444555554
No 96
>KOG0291|consensus
Probab=95.64 E-value=3.2 Score=42.86 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=129.9
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+..+++...+++|-+.-+..++|.+-+.... +..- .++......|++ .++++..|-..++.|...| ..|-=..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ--QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ--QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec--cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 44555666666777665556667777666655 2111 144555667777 6778888888888888888 6654444
Q ss_pred EEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 93 VLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 93 ~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
++..... ..++.+-..+ ..+++..-.|.+|..++.-..
T Consensus 387 TFteHts~Vt~v~f~~~g-----------------------------------------~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARG-----------------------------------------NVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred EeccCCCceEEEEEEecC-----------------------------------------CEEEEeecCCeEEeeeecccc
Confidence 4544333 5555542221 133444334468887775443
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEE
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw 251 (377)
. . ..+..+..-....+++|+.+.-++-.+...-.|+..++.......+.. ..-+-+.+|+++|.+..| .
T Consensus 426 N--f-RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-------GHEgPVs~l~f~~~~~~L-a 494 (893)
T KOG0291|consen 426 N--F-RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-------GHEGPVSGLSFSPDGSLL-A 494 (893)
T ss_pred e--e-eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-------CCCCcceeeEEccccCeE-E
Confidence 3 1 122223334567889999888888877777789988886444333333 122336789999976655 5
Q ss_pred EcCCCCEEEEEEcCCC--eEEEEeeCCCCCceeEEEcCCCCeEEEEe
Q psy5792 252 SDPKENVIEVARLTGQ--YRYVLISGGVDQPSALAVDPESGYLFWSE 296 (377)
Q Consensus 252 td~~~~~I~~~~~~g~--~~~~l~~~~~~~P~~iavdp~~g~lywtd 296 (377)
+-+..++|.+-++=++ ..+++-- -....++++.|.+..|-++.
T Consensus 495 S~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVAT 539 (893)
T ss_pred eccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEE
Confidence 6565666666555443 2223211 12234555555555555543
No 97
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.63 E-value=1.7 Score=41.79 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=66.8
Q ss_pred EcCCCC--EEEEEEcCCCeEEEEeeC----CCCCceeEEE--cCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 252 SDPKEN--VIEVARLTGQYRYVLISG----GVDQPSALAV--DPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP 323 (377)
Q Consensus 252 td~~~~--~I~~~~~~g~~~~~l~~~----~~~~P~~iav--dp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~ 323 (377)
.+...+ .+..++......+++... -+.....+.. ...+++|++++...-.+|+..+.+|...+.|......-
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V 282 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEV 282 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-E
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceee
Confidence 344444 567777765444444432 1333344443 23345555555322578999999998877666553222
Q ss_pred ceEEEEeCCCCEEEEEEeCC----CCeEEEEEcc-CCceEEE
Q psy5792 324 IKDITLDRKNKRVYWCYSVG----SNVLESMDYS-GGSKMQL 360 (377)
Q Consensus 324 P~glalD~~~~~LYw~d~~~----~~~i~~~~~~-G~~~~~~ 360 (377)
-.-+.+|..++.||++-. . ...|++++++ |+..+.|
T Consensus 283 ~~i~~~d~~~~~iyf~a~-~~~p~~r~lY~v~~~~~~~~~~L 323 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTAN-GDNPGERHLYRVSLDSGGEPKCL 323 (353)
T ss_dssp EEEEEEECTSSEEEEEES-SGGTTSBEEEEEETTETTEEEES
T ss_pred cccceEcCCCCEEEEEec-CCCCCceEEEEEEeCCCCCeEec
Confidence 124888999999999987 4 5699999999 7655444
No 98
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.60 E-value=2.1 Score=40.49 Aligned_cols=286 Identities=12% Similarity=0.065 Sum_probs=132.7
Q ss_pred CCeEEEEeCC----CCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEcCCCCceEEEecCCC-
Q psy5792 27 GPFVYGVKTL----SHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAG- 99 (377)
Q Consensus 27 ~~~ly~~d~~----~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~g~~~~~~~~~~~- 99 (377)
..|+|+.|.. .++++.+|.|.. .-++- .+...+..++-.+..+|.++....++.+-..+ ..+++.....-
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~Rt-Dvv~~~D~~TL~ 78 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERT-DVVEIWDTQTLS 78 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEE-EEEEEEETTTTE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccce-eEEEEEecCcCc
Confidence 4588888883 467888887666 44443 33333444444677888876533333222100 01222222211
Q ss_pred cee-EEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCC-CCeEEEEEcCCCCceeeEE
Q psy5792 100 ISD-FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNS-GYDIMGIKYNKNESKVTQV 177 (377)
Q Consensus 100 p~~-i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~-~~~I~~~~l~~~~~~~~~~ 177 (377)
|.+ |.+-...|+ +|++.+.... =...+.++++.+-+ .-+|..+++..... -.
T Consensus 79 ~~~EI~iP~k~R~-----------------~~~~~~~~~~------ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---v~ 132 (342)
T PF06433_consen 79 PTGEIEIPPKPRA-----------------QVVPYKNMFA------LSADGKFLYVQNFTPATSVTVVDLAAKKV---VG 132 (342)
T ss_dssp EEEEEEETTS-B-------------------BS--GGGEE------E-TTSSEEEEEEESSSEEEEEEETTTTEE---EE
T ss_pred ccceEecCCcchh-----------------eecccccceE------EccCCcEEEEEccCCCCeEEEEECCCCce---ee
Confidence 322 222111122 1221111111 00123566665521 11377777766532 11
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc--ceEEEeccCCeEEEEcCC
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF--TDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p--~~iavD~~~~~lYwtd~~ 255 (377)
..+..+ -.+.|-..++. |.+-..+|++..+.+|-...+.... ....... ..| ..=+++-.++.+||...
T Consensus 133 ei~~PG----C~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~-t~~F~~~--~dp~f~~~~~~~~~~~~~F~Sy- 203 (342)
T PF06433_consen 133 EIDTPG----CWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKS-TKVFDPD--DDPLFEHPAYSRDGGRLYFVSY- 203 (342)
T ss_dssp EEEGTS----EEEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEE-EEESSTT--TS-B-S--EEETTTTEEEEEBT-
T ss_pred eecCCC----EEEEEecCCCc-eEEEecCCceEEEEECCCCCEeEee-ccccCCC--CcccccccceECCCCeEEEEec-
Confidence 222222 11222222344 4455578899888887433322111 1111111 111 11133434667888655
Q ss_pred CCEEEEEEcCCCeEEEEeeC---------CCCCc---eeEEEcCCCCeEEEEec-C-----C--CCeEEEEecCCCCeEE
Q psy5792 256 ENVIEVARLTGQYRYVLISG---------GVDQP---SALAVDPESGYLFWSES-G-----K--IPLIARAGLDGKKQTI 315 (377)
Q Consensus 256 ~~~I~~~~~~g~~~~~l~~~---------~~~~P---~~iavdp~~g~lywtd~-g-----~--~~~I~r~~ldG~~~~~ 315 (377)
.+.|+.+++.|...+..-.- .--.| .-+|+++..++||+.-. + + ...|+..++.-..+..
T Consensus 204 ~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~ 283 (342)
T PF06433_consen 204 EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA 283 (342)
T ss_dssp TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE
T ss_pred CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE
Confidence 47899999999764432210 11234 34899999999999742 1 1 2357777766443322
Q ss_pred EEecCCCCc-eEEEEeCCCC-EEEEEEeCCCCeEEEEEcc
Q psy5792 316 LAQEIIMPI-KDITLDRKNK-RVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 316 l~~~~~~~P-~glalD~~~~-~LYw~d~~~~~~i~~~~~~ 353 (377)
-+. +..| .+|++....+ +||-++. ....+...+..
T Consensus 284 Ri~--l~~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~ 320 (342)
T PF06433_consen 284 RIP--LEHPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAA 320 (342)
T ss_dssp EEE--EEEEESEEEEESSSS-EEEEEET-TTTEEEEEETT
T ss_pred EEe--CCCccceEEEccCCCcEEEEEcC-CCCeEEEEeCc
Confidence 222 2222 3566654444 5555565 55666666654
No 99
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.83 E-value=0.11 Score=38.89 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=32.3
Q ss_pred CCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 311 ~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
+..++++. .+..|+||++|+..+.||+++. ..+.|......
T Consensus 44 ~~~~~va~-g~~~aNGI~~s~~~k~lyVa~~-~~~~I~vy~~~ 84 (86)
T PF01731_consen 44 KEVKVVAS-GFSFANGIAISPDKKYLYVASS-LAHSIHVYKRH 84 (86)
T ss_pred CEeEEeec-cCCCCceEEEcCCCCEEEEEec-cCCeEEEEEec
Confidence 33344444 4899999999999999999999 88888876553
No 100
>KOG0285|consensus
Probab=94.82 E-value=3.7 Score=38.82 Aligned_cols=236 Identities=13% Similarity=0.102 Sum_probs=132.1
Q ss_pred CCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccC
Q psy5792 57 DAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPL 133 (377)
Q Consensus 57 ~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~ 133 (377)
.+.-...++| -.++-|.|...++.|...| .+|+-...+..... ..+++|...-
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH------------------------ 205 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH------------------------ 205 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC------------------------
Confidence 3445566788 5678888888888888889 88887766664445 7777773331
Q ss_pred CCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEE
Q psy5792 134 SKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212 (377)
Q Consensus 134 ~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~ 212 (377)
+ .+|+.+..+.|...+|+.... +-. -..++...++++++. -.+.++-..+..++..
T Consensus 206 ----------------p-YlFs~gedk~VKCwDLe~nkv-----IR~YhGHlS~V~~L~lhPT-ldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 206 ----------------P-YLFSAGEDKQVKCWDLEYNKV-----IRHYHGHLSGVYCLDLHPT-LDVLVTGGRDSTIRVW 262 (460)
T ss_pred ----------------c-eEEEecCCCeeEEEechhhhh-----HHHhccccceeEEEecccc-ceeEEecCCcceEEEe
Confidence 2 334444444577777765421 100 123456788888874 4445555455566666
Q ss_pred EcCCCCcEEEEeccccCCCCC-CCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcCCCC
Q psy5792 213 HRDGTGRENIIEYVETGDPTP-VDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~-~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g 290 (377)
++.... .+.+- .+ -.....+...+.+..+| |-+...+|..-++. |+...++.. .-...++++++| .-
T Consensus 263 DiRtr~-~V~~l-------~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP-~e 331 (460)
T KOG0285|consen 263 DIRTRA-SVHVL-------SGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHP-KE 331 (460)
T ss_pred eecccc-eEEEe-------cCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCceeEeeec-ccceeeEEecCC-ch
Confidence 765322 22222 12 22244555555556564 44455667766664 344444444 356789999998 56
Q ss_pred eEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCc
Q psy5792 291 YLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356 (377)
Q Consensus 291 ~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~ 356 (377)
++|-+-. ...|....+. |...+. ++..-...+.|++ ..+.+|++-. .++.|..-+...+.
T Consensus 332 ~~fASas--~dnik~w~~p~g~f~~n-lsgh~~iintl~~--nsD~v~~~G~-dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 332 NLFASAS--PDNIKQWKLPEGEFLQN-LSGHNAIINTLSV--NSDGVLVSGG-DNGSIMFWDWKSGH 392 (460)
T ss_pred hhhhccC--CccceeccCCccchhhc-cccccceeeeeee--ccCceEEEcC-CceEEEEEecCcCc
Confidence 6666542 3455555442 433333 1111122334444 3455666666 66666666665443
No 101
>KOG0268|consensus
Probab=93.91 E-value=1.8 Score=40.91 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=146.7
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEcCCCCceEE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSINLDGSNSTV 93 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~~~g~~~~~ 93 (377)
.+..+|-++.......+-+..|.|..-|+.-+ .+++. ....-..||.+ .+..+++.|-.+=..+.+ +|....+
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~--AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~--~~~p~~t 143 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK--AHEGLVRGICVTQTSFFTVGDDKTVKQWKI--DGPPLHT 143 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee--cccCceeeEEecccceEEecCCcceeeeec--cCCccee
Confidence 56677777766566667777888988898887 56564 44556788988 677778877654444444 3434444
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccc------cCCCccccCCcC---CCc--CCCcEEEEEeCCCCeE
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLG------PLSKVSLAAKVD---FHA--GISDFILFSVNSGYDI 162 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~------~~~~~~~~~G~~---~C~--~~~~~l~~s~~~~~~I 162 (377)
+..+....||.-..... ....|.+.|- ..|-....-|+. +|+ ..+.+++.+.+..++|
T Consensus 144 ilg~s~~~gIdh~~~~~-----------~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 144 ILGKSVYLGIDHHRKNS-----------VFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred eeccccccccccccccc-----------cccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 43322233332111100 0112221111 112222244555 333 2456777777666668
Q ss_pred EEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCCCCCCCcceEE
Q psy5792 163 MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDPTPVDQFTDIA 241 (377)
Q Consensus 163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~~~~~~p~~ia 241 (377)
.-+++.-... +..+.-.-++-+|++.+ +...|.+-.+...++..++.--.+. .+.. ......-+++
T Consensus 213 vLyD~R~~~P-----l~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------dhvsAV~dVd 279 (433)
T KOG0268|consen 213 VLYDLRQASP-----LKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------DHVSAVMDVD 279 (433)
T ss_pred EEEecccCCc-----cceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhc-------ccceeEEEec
Confidence 8887754422 11111223466788888 7788877767778887776532111 1111 2233355566
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCC-eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQ-YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~-~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+.+ +|.=|++-+-..+|..+..+.. .+.+...--+++..++.-.....+|+--....+-++++++..
T Consensus 280 fsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 280 FSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred cCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 665 5666677777778888887654 344444334666677776655556655322236788888654
No 102
>KOG1036|consensus
Probab=93.83 E-value=5.5 Score=36.86 Aligned_cols=266 Identities=14% Similarity=0.078 Sum_probs=132.2
Q ss_pred cCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEEEC-CeEEEEcCCCCceEEEcCCC
Q psy5792 11 RNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYK-GRIIYSDANDGNIRSINLDG 88 (377)
Q Consensus 11 ~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~g 88 (377)
++|-.++++.+-+++.++.|-++. =.+.+...+.+.. .+..+ ....-....++.+ ..+|..+ -.+.|+++|.++
T Consensus 9 ~npP~d~IS~v~f~~~~~~LLvss-WDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~~~~~~G~-~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 9 ENPPEDGISSVKFSPSSSDLLVSS-WDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADESTIVTGG-LDGQVRRYDLNT 84 (323)
T ss_pred CCCChhceeeEEEcCcCCcEEEEe-ccCcEEEEeccchhhhhhe--ecCCceeeeeccCCceEEEec-cCceEEEEEecC
Confidence 455567788888887777765443 5677777777776 44333 2222234455533 3565554 467899999655
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
.....+.+... ..+|.-. +.. -.+++.+-...|...+.
T Consensus 85 ~~~~~igth~~~i~ci~~~-~~~----------------------------------------~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYS-YEV----------------------------------------GCVISGSWDKTIKFWDP 123 (323)
T ss_pred CcceeeccCCCceEEEEee-ccC----------------------------------------CeEEEcccCccEEEEec
Confidence 55445544333 3333321 111 13334333334665554
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEeccccCCCCCCC-CcceEEEecc
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVETGDPTPVD-QFTDIAVDWI 245 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~~~~~~~~-~p~~iavD~~ 245 (377)
...- ........+.+..+++. ++.|.+.-. ..++...++.-- ....... ..++ ..++|+.-+
T Consensus 124 R~~~-----~~~~~d~~kkVy~~~v~--g~~LvVg~~-~r~v~iyDLRn~~~~~q~re-------S~lkyqtR~v~~~p- 187 (323)
T KOG1036|consen 124 RNKV-----VVGTFDQGKKVYCMDVS--GNRLVVGTS-DRKVLIYDLRNLDEPFQRRE-------SSLKYQTRCVALVP- 187 (323)
T ss_pred cccc-----cccccccCceEEEEecc--CCEEEEeec-CceEEEEEcccccchhhhcc-------ccceeEEEEEEEec-
Confidence 4211 11111222233333332 444444221 123333333210 0000001 1222 256677776
Q ss_pred CCeEEEEcCCCCEEEEEEcCCC----eEEEEee--------CCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQ----YRYVLIS--------GGVDQP-SALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~----~~~~l~~--------~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
++-=|+...-.+||.+=.+|-+ .++-... ..+..| ++|+++|..+.++-.. ..+.|..-++ .+
T Consensus 188 n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG--sDG~V~~Wd~--~~ 263 (323)
T KOG1036|consen 188 NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG--SDGIVNIWDL--FN 263 (323)
T ss_pred CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC--CCceEEEccC--cc
Confidence 6667777777777777666554 2221111 123345 8999999866655443 3455555443 34
Q ss_pred eEEEEe--cCCCCceEEEEeCCCCEEEEEEe
Q psy5792 313 QTILAQ--EIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 313 ~~~l~~--~~~~~P~glalD~~~~~LYw~d~ 341 (377)
++.|-+ ..-.....|+++.....|-++..
T Consensus 264 rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 264 RKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 443322 21134556788777777777766
No 103
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=4.4 Score=35.65 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=46.8
Q ss_pred EeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee------------CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS------------GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 242 vD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~------------~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+.|+.|.||--=....+|.+++++.......++ .+.+-++|||-||..+++|.|-.. =+.++.+.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~-wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL-WPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc-CceeEEEEec
Confidence 455677777655566778888887654433222 235578999999999999999532 4677777665
Q ss_pred C
Q psy5792 310 G 310 (377)
Q Consensus 310 G 310 (377)
+
T Consensus 260 ~ 260 (262)
T COG3823 260 E 260 (262)
T ss_pred C
Confidence 4
No 104
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.68 E-value=4.9 Score=39.71 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCC--CCEEEEEEcCCCeEEEEeeCC-CCCceeEE
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPK--ENVIEVARLTGQYRYVLISGG-VDQPSALA 284 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~g~~~~~l~~~~-~~~P~~ia 284 (377)
+|+..+++....+.+.. --+.-..-++-+.+..|.++-.. ...|++++++++....|.... .. ..=.
T Consensus 219 ~i~~~~l~~g~~~~i~~--------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~--~~Ps 288 (425)
T COG0823 219 RIYYLDLNTGKRPVILN--------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGIN--TSPS 288 (425)
T ss_pred eEEEEeccCCccceeec--------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccc--cCcc
Confidence 57777887666666654 11122223444446777666443 347999999998866654421 11 1334
Q ss_pred EcCCCCeEEEE-ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCe--EEEEEcc
Q psy5792 285 VDPESGYLFWS-ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV--LESMDYS 353 (377)
Q Consensus 285 vdp~~g~lywt-d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~--i~~~~~~ 353 (377)
+.|...+|+++ |.+..+.|++++++|+..+.+.... ....--.+.+.+.+|-+... ..+. |...++.
T Consensus 289 ~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~-~~~~~p~~SpdG~~i~~~~~-~~g~~~i~~~~~~ 358 (425)
T COG0823 289 WSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG-GGNSNPVWSPDGDKIVFESS-SGGQWDIDKNDLA 358 (425)
T ss_pred CCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC-CCCcCccCCCCCCEEEEEec-cCCceeeEEeccC
Confidence 55666777766 4444789999999999887666552 33223334445555555553 3333 4444443
No 105
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=93.59 E-value=1.2 Score=45.28 Aligned_cols=66 Identities=29% Similarity=0.440 Sum_probs=48.6
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCC-------------------CEEEEEEcCCC-------eEEE-Eee----------
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKE-------------------NVIEVARLTGQ-------YRYV-LIS---------- 274 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~-------------------~~I~~~~~~g~-------~~~~-l~~---------- 274 (377)
..+.+|++|++++.++.+|++-.+. +.|++..+++. .-.. +..
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4577899999999999999985432 48999988765 2222 221
Q ss_pred ------CCCCCceeEEEcCCCCeEEEEecC
Q psy5792 275 ------GGVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 275 ------~~~~~P~~iavdp~~g~lywtd~g 298 (377)
..+..|-.|++|| .|.|++.+-+
T Consensus 427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDP-DGNLWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECC-CCCEEEEeCC
Confidence 1277999999998 6778887644
No 106
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.50 E-value=7.5 Score=37.41 Aligned_cols=134 Identities=15% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEee
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLIS 274 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~ 274 (377)
++.+|.++. .+.++.+++... +.+.. .........+++ +++||+++. .+.+..++.+ |+..-..-.
T Consensus 241 ~~~vy~~~~-~g~l~a~d~~tG--~~~W~-------~~~~~~~~p~~~--~~~vyv~~~-~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDLRSG--RVLWK-------RDASSYQGPAVD--DNRLYVTDA-DGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred CCEEEEEEc-CCEEEEEECCCC--cEEEe-------eccCCccCceEe--CCEEEEECC-CCeEEEEECCCCcEEEcccc
Confidence 678998874 578888887522 22232 122234455666 788998864 5789988885 432211100
Q ss_pred CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 275 GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 275 ~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
.........++ .+++||..+. ...|...+.+ |+....+-...-......++ .+++||+... .++|+.+
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~--~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~--~~~~l~v~~~--dG~l~~~ 376 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDF--EGYLHWLSREDGSFVARLKTDGSGIASPPVV--VGDGLLVQTR--DGDLYAF 376 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeC--CCEEEEEECCCCCEEEEEEcCCCccccCCEE--ECCEEEEEeC--CceEEEe
Confidence 00001112233 2568888763 4677777654 44333322111001111222 2467888775 4566554
No 107
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.29 E-value=1.2 Score=42.40 Aligned_cols=107 Identities=16% Similarity=0.247 Sum_probs=68.2
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCC------EEEEEEcCCC-----eEE-----EEeeCC---C----CCceeEEEcCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKEN------VIEVARLTGQ-----YRY-----VLISGG---V----DQPSALAVDPE 288 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~------~I~~~~~~g~-----~~~-----~l~~~~---~----~~P~~iavdp~ 288 (377)
..++.-.||++|. .+..||+-+.++ +++..+++.. ... .+.... + ..|.+|++ +.
T Consensus 17 ~~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~ 94 (326)
T PF13449_consen 17 IPFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PP 94 (326)
T ss_pred CccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ec
Confidence 3466788999986 344556533333 3776666541 111 111111 1 26789999 57
Q ss_pred CCeEEEEecCCC------CeEEEEecCCCCeEEE-EecCC-------------CCceEEEEeCCCCEEEEEEe
Q psy5792 289 SGYLFWSESGKI------PLIARAGLDGKKQTIL-AQEII-------------MPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 289 ~g~lywtd~g~~------~~I~r~~ldG~~~~~l-~~~~~-------------~~P~glalD~~~~~LYw~d~ 341 (377)
+|.+||++.+ . ++|.+++.+|.....+ +...+ .-.-|||+.+.+.+||.+-.
T Consensus 95 ~g~~~is~E~-~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 95 DGSFWISSEG-GRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCCEEEEeCC-ccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 9999999986 6 9999999998875544 22211 22568999887777887744
No 108
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.27 E-value=0.56 Score=29.33 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=30.8
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 286 (377)
.++.||+++...++|.++++.......-+.. ...|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 3678999999999999999865543333444 4779999874
No 109
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.19 E-value=0.25 Score=37.03 Aligned_cols=34 Identities=15% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
.++..|.||++|+.++.||+++...+.|.+....
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4788999999999999999999999999987653
No 110
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.74 E-value=0.54 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF 66 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav 66 (377)
++++||+++...+.|..+|+... ...+ .....|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i---~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATI---PVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEE---ECCCCCceEEe
Confidence 56789999999999999998666 4444 44678998875
No 111
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=92.51 E-value=2 Score=43.60 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCC-------------------CcEEEEEcCCC-------CcEEEEeccc--------
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDH-------------------GTISRTHRDGT-------GRENIIEYVE-------- 227 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~-------------------~~I~~~~~~G~-------~~~~i~~~~~-------- 227 (377)
+.+.++.++.+++.++.||++-... |.|+++..++. ..+.++....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 4677899999999999999986433 38999998765 2233332111
Q ss_pred --cCCCCCCCCcceEEEeccCCeEEEEc
Q psy5792 228 --TGDPTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 228 --~~~~~~~~~p~~iavD~~~~~lYwtd 253 (377)
......+..|.+|++|+ .++||+..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~-~G~LwI~e 453 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDP-DGNLWIQE 453 (524)
T ss_pred cCcccCCCcCCCCceEECC-CCCEEEEe
Confidence 01124577899999997 57777763
No 112
>KOG0310|consensus
Probab=92.50 E-value=12 Score=36.85 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=126.8
Q ss_pred eeEeeccccCCCCc---CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcC
Q psy5792 3 YLHVLPYTRNPSFG---AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDA 76 (377)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~ 76 (377)
..||..++..++.+ .++++++.++.+.=+.+ +.+-++.-++..+. ++++. .--....++.+ .+++|..+--
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aV-t~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAV-TSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEE-ecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccC
Confidence 35677777777754 66777888876654333 34555666777776 44442 34456788888 7889999887
Q ss_pred CCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 77 NDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 77 ~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
..+.|..++ .+....+.+.....|....-|+++.- .++.+
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~---------------------------------------t~l~s 128 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDN---------------------------------------TMLVS 128 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCC---------------------------------------eEEEe
Confidence 888899888 32222333333334544444444321 23333
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
..+...+.-.++... .+...+.+ ..-....++.+.+++|.++-..+|.|.-.+..... ..+.. -+-
T Consensus 129 ~sDd~v~k~~d~s~a-----~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-------lnh 195 (487)
T KOG0310|consen 129 GSDDKVVKYWDLSTA-----YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-------LNH 195 (487)
T ss_pred cCCCceEEEEEcCCc-----EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-------ecC
Confidence 333222333344333 11222222 22367788888899999998888999888876443 23332 123
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcC-CCeEEEEeeCCCCCceeEEEcC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLT-GQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp 287 (377)
+.|..-.+--.++.++.+-.+ +.+.+-++- |........+.......+.+..
T Consensus 196 g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 196 GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 333322222235566665554 567777776 4332222222344455666543
No 113
>PTZ00421 coronin; Provisional
Probab=92.44 E-value=13 Score=37.45 Aligned_cols=218 Identities=11% Similarity=0.068 Sum_probs=109.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc---------EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK---------VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~---------~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~ 85 (377)
.+.+++.++.++.+..+-+..+.|...++... ..++. .+......|++. .+.+.++-..++.|...|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~--gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ--GHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec--CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 45677777744455556666777777776432 22232 334456677773 345666666677888888
Q ss_pred -CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEE
Q psy5792 86 -LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIM 163 (377)
Q Consensus 86 -~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~ 163 (377)
.+++....+..... +.++.. +++. .++++....+.|+
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~-spdG----------------------------------------~lLatgs~Dg~Ir 193 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEW-NLDG----------------------------------------SLLCTTSKDKKLN 193 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEE-ECCC----------------------------------------CEEEEecCCCEEE
Confidence 55655444432222 344433 2221 2444444444577
Q ss_pred EEEcCCCCceeeEEEEecCCC--CceEEEEEECCCCEEEEEEc---CCCcEEEEEcCCCC-cEEEEeccccCCCCCCCCc
Q psy5792 164 GIKYNKNESKVTQVLGPLSKV--SLAAKVDFHAAEDYIYWVDI---DHGTISRTHRDGTG-RENIIEYVETGDPTPVDQF 237 (377)
Q Consensus 164 ~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~d~~~~~ly~sd~---~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~~~p 237 (377)
..++..... +..+... .....+.+....+.++-+-. ..+.|...++.... ....... ......
T Consensus 194 IwD~rsg~~-----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~------d~~~~~ 262 (493)
T PTZ00421 194 IIDPRDGTI-----VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL------DQSSAL 262 (493)
T ss_pred EEECCCCcE-----EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc------CCCCce
Confidence 777754322 1111111 11223334443455543321 23567767765322 1111110 111112
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCC
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPE 288 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~ 288 (377)
....+|+.++.||.+-...+.|...++...............| +++++-|.
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 2345677666677766667889998887654333322222233 67777774
No 114
>KOG0315|consensus
Probab=91.97 E-value=9.2 Score=34.55 Aligned_cols=238 Identities=11% Similarity=0.083 Sum_probs=135.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEe-CCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVS-MPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~-~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.++-|.|.++...| +-.....|+..|++.. ..-+.. +..-++..++.+ .+++-.+|...++.+..-+ ..-.-.
T Consensus 41 sqVNrLeiTpdk~~L--Aaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q 118 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDL--AAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ 118 (311)
T ss_pred cceeeEEEcCCcchh--hhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc
Confidence 356778888877777 7777888999999877 322221 144567888888 7888888888888777776 321112
Q ss_pred EEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCC
Q psy5792 92 TVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNE 171 (377)
Q Consensus 92 ~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~ 171 (377)
+.+... .|..-.+.||.. .-|+.++.+ |.|+.-++....
T Consensus 119 R~~~~~-spVn~vvlhpnQ---------------------------------------teLis~dqs-g~irvWDl~~~~ 157 (311)
T KOG0315|consen 119 RNYQHN-SPVNTVVLHPNQ---------------------------------------TELISGDQS-GNIRVWDLGENS 157 (311)
T ss_pred hhccCC-CCcceEEecCCc---------------------------------------ceEEeecCC-CcEEEEEccCCc
Confidence 222222 222222223321 134544433 468888886554
Q ss_pred ceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-Cc---EEEEeccccCCCCCCCCcceEEEeccCC
Q psy5792 172 SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GR---ENIIEYVETGDPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~---~~i~~~~~~~~~~~~~~p~~iavD~~~~ 247 (377)
. +..+.|- ....+..+.+++.+.+|--.+ +.|..+..++-+. .. +.+.. ....-+....+-+-+...
T Consensus 158 c--~~~liPe-~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P~~k-----~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 158 C--THELIPE-DDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEPVHK-----FQAHNGHILRCLLSPDVK 228 (311)
T ss_pred c--ccccCCC-CCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceEhhh-----eecccceEEEEEECCCCc
Confidence 3 3334442 335577888888666655444 4566666665331 11 11111 001112344455665433
Q ss_pred eEEEEcCCCCEEEEEEcCCCeE-EEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 248 NIYWSDPKENVIEVARLTGQYR-YVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 248 ~lYwtd~~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
...|-+...++.+.+.++-++ +..+..+...-.+.++.....||+-+......+++..
T Consensus 229 -~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 229 -YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred -EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 445666777888888888743 3344555567788888876667766643223455443
No 115
>KOG0279|consensus
Probab=91.74 E-value=10 Score=34.69 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=138.2
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-------EEEEEeCCCCCc-eEEEEE-ECCeEEEEcCCCCceEEEc-
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-------VAKVVSMPDAAQ-VVAAVF-YKGRIIYSDANDGNIRSIN- 85 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-------~~~i~~~~~~~~-p~~lav-~~~~ly~td~~~~~I~~~~- 85 (377)
+.+.++++-..++.+|...+....|.+-++... .+.+ .+..| ..++++ .++..+++-..++.++.-|
T Consensus 16 d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~---~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 16 DWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL---TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred ceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee---eccceEecceEEccCCceEEeccccceEEEEEe
Confidence 356788888888889888888888888776544 2222 23333 455666 7777788877788888889
Q ss_pred CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEE
Q psy5792 86 LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG 164 (377)
Q Consensus 86 ~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~ 164 (377)
..|+..+.+..... ..++++...++|. |..+.. ....++-.... +...
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qi-----------------vSGSrD-------------kTiklwnt~g~-ck~t 141 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQI-----------------VSGSRD-------------KTIKLWNTLGV-CKYT 141 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCcee-----------------ecCCCc-------------ceeeeeeeccc-EEEE
Confidence 66766555554444 8888886666661 111000 01111111110 1111
Q ss_pred EEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEE-EEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe
Q psy5792 165 IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIY-WVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD 243 (377)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly-~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD 243 (377)
+.-++ ...-...+.|.|.+...+ ++-...+.+...++++-..+.... ..-+....++|-
T Consensus 142 ~~~~~-------------~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-------gh~~~v~t~~vS 201 (315)
T KOG0279|consen 142 IHEDS-------------HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-------GHSGYVNTVTVS 201 (315)
T ss_pred EecCC-------------CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-------cccccEEEEEEC
Confidence 11111 022356677777664444 444456778888888644333322 234457788888
Q ss_pred ccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 244 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 244 ~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
+ .|.|--+-...+.++.-+++-+..-.-+ ......+++++-|. =||--.+....|.-.+++.+
T Consensus 202 p-DGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspn---rywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 202 P-DGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPN---RYWLCAATATSIKIWDLESK 264 (315)
T ss_pred C-CCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCC---ceeEeeccCCceEEEeccch
Confidence 5 5778777777789999999765442222 23556788999873 24433333345665666543
No 116
>KOG0278|consensus
Probab=91.35 E-value=4.4 Score=36.54 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=87.5
Q ss_pred ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCC
Q psy5792 67 YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFH 145 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C 145 (377)
.++.-+.+....+.|+.-| .+|+....+.-+..+.++.+-+..+
T Consensus 153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~----------------------------------- 197 (334)
T KOG0278|consen 153 HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR----------------------------------- 197 (334)
T ss_pred ccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCC-----------------------------------
Confidence 7888888888888899999 8898877776554466666533332
Q ss_pred cCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEE-Ee
Q psy5792 146 AGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI-IE 224 (377)
Q Consensus 146 ~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i-~~ 224 (377)
.|..+.+.+ |.-.+...-+ .+....-.-++.+-.+.+ ...+|++--+...+++++.+....... ..
T Consensus 198 -----ilTia~gss--V~Fwdaksf~-----~lKs~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 198 -----ILTIAYGSS--VKFWDAKSFG-----LLKSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred -----EEEEecCce--eEEecccccc-----ceeeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeeccc
Confidence 355555544 5444333221 111112222344455566 458888877778899999875432222 23
Q ss_pred ccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 225 YVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 225 ~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+-+.++.+-| .|.+|-+-+..++|..-.
T Consensus 265 -------gh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 265 -------GHFGPVHCVRFSP-DGELYASGSEDGTIRLWQ 295 (334)
T ss_pred -------CCCCceEEEEECC-CCceeeccCCCceEEEEE
Confidence 3455577888886 688998877777655433
No 117
>KOG0315|consensus
Probab=91.31 E-value=11 Score=34.09 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=83.9
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
|..+..-. ||-+++..... +.+..+.+ .++..++.|...+..+| +-.+.+.+...++..-..+....
T Consensus 55 LAaa~~qh--vRlyD~~S~np---~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~------ 122 (311)
T KOG0315|consen 55 LAAAGNQH--VRLYDLNSNNP---NPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQ------ 122 (311)
T ss_pred hhhccCCe--eEEEEccCCCC---CceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccchhcc------
Confidence 44444444 99999987655 23344444 37789999998666666 44467777777776433333333
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWS 295 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywt 295 (377)
...-...+.+.+....|+..|.. +.|.+-++.... ...++-......+.++|+|...+|-=+
T Consensus 123 --~~spVn~vvlhpnQteLis~dqs-g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 123 --HNSPVNTVVLHPNQTELISGDQS-GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred --CCCCcceEEecCCcceEEeecCC-CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 12346678888888888888775 678888887764 335555556667899999865444433
No 118
>KOG0289|consensus
Probab=91.18 E-value=16 Score=35.63 Aligned_cols=191 Identities=12% Similarity=0.135 Sum_probs=102.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+.++++.+.+.++++.|++... .+...+. +|+ ..++..+...-.-..+++ -++-||-+-..++.+...+ .++.+.
T Consensus 304 ~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~ 382 (506)
T KOG0289|consen 304 EPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV 382 (506)
T ss_pred ccceeeeeccCCcEEEEecCCc-eEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc
Confidence 3568899999999998886654 4444444 666 666642222233456677 4556666666666666667 555555
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
..+....+ +..|.+ .+ +.+.+....+.++|+-.+|.-.
T Consensus 383 a~Fpght~~vk~i~F-sE----------------------------------------NGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 383 AKFPGHTGPVKAISF-SE----------------------------------------NGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred ccCCCCCCceeEEEe-cc----------------------------------------CceEEEEEecCCeEEEEEehhh
Confidence 55544334 344443 11 1234444434445777776543
Q ss_pred CceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEE
Q psy5792 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lY 250 (377)
.. . ..+++........++||..+.+|-.. ...-+|+.+.........+..- ....+...++.+.. ..-|
T Consensus 422 ~n--~-kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~-----~~~sg~st~v~Fg~--~aq~ 490 (506)
T KOG0289|consen 422 KN--F-KTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKEL-----ADHSGLSTGVRFGE--HAQY 490 (506)
T ss_pred cc--c-ceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehh-----hhcccccceeeecc--cceE
Confidence 33 1 22334444467889999977777665 2334666666544443333320 01223355566652 3344
Q ss_pred EEcCCCCEE
Q psy5792 251 WSDPKENVI 259 (377)
Q Consensus 251 wtd~~~~~I 259 (377)
..+....+|
T Consensus 491 l~s~smd~~ 499 (506)
T KOG0289|consen 491 LASTSMDAI 499 (506)
T ss_pred Eeeccchhh
Confidence 445544444
No 119
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.82 E-value=17 Score=35.36 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=73.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG 275 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~ 275 (377)
++.||+.+. .+.++.+++... +.+-. ..+..+..++++ +++||+.+.. +++...+...... +-..
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG--~~~W~-------~~~~~~~~~~~~--~~~vy~~~~~-g~l~ald~~tG~~--~W~~ 320 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSG--QIVWK-------REYGSVNDFAVD--GGRIYLVDQN-DRVYALDTRGGVE--LWSQ 320 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCC--CEEEe-------ecCCCccCcEEE--CCEEEEEcCC-CeEEEEECCCCcE--EEcc
Confidence 688998874 578888887532 22333 233344456666 7899998754 6888888864321 1110
Q ss_pred C-C--CCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEE
Q psy5792 276 G-V--DQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMD 351 (377)
Q Consensus 276 ~-~--~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~ 351 (377)
. + ....+.++ .+++||..+. ...|...+.+ |+.....-...-......++ .+++||+... .+.|+.+.
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~--~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~--~G~l~~~~ 392 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDS--EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQAR--DGTVYAIT 392 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeC--CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeC--CceEEEEe
Confidence 0 0 11122233 3688988874 4677777653 43222211100011122233 3579999875 56777665
Q ss_pred c
Q psy5792 352 Y 352 (377)
Q Consensus 352 ~ 352 (377)
.
T Consensus 393 ~ 393 (394)
T PRK11138 393 R 393 (394)
T ss_pred C
Confidence 3
No 120
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=15 Score=34.19 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=88.8
Q ss_pred ECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEE
Q psy5792 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 271 (377)
Q Consensus 193 d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~ 271 (377)
...++++|++|..+ .+..++...-...++... -++ +-.++.++- ++..|++|...+ ....++......+
T Consensus 93 ~vse~yvyvad~ss-GL~IvDIS~P~sP~~~~~------lnt~gyaygv~vs--Gn~aYVadlddg-fLivdvsdpssP~ 162 (370)
T COG5276 93 RVSEEYVYVADWSS-GLRIVDISTPDSPTLIGF------LNTDGYAYGVYVS--GNYAYVADLDDG-FLIVDVSDPSSPQ 162 (370)
T ss_pred EecccEEEEEcCCC-ceEEEeccCCCCcceecc------ccCCceEEEEEec--CCEEEEeeccCc-EEEEECCCCCCce
Confidence 34489999999654 444455543222222210 122 224444443 788999997544 3334443333323
Q ss_pred EeeC---CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEE
Q psy5792 272 LISG---GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLE 348 (377)
Q Consensus 272 l~~~---~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~ 348 (377)
|... ..-.-+.++| ...+-|++.++ .-+...+.+.....+++..--..|.--.+-...+|.|.++. ...+.
T Consensus 163 lagrya~~~~d~~~v~I--SGn~AYvA~~d--~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 163 LAGRYALPGGDTHDVAI--SGNYAYVAWRD--GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred eeeeeccCCCCceeEEE--ecCeEEEEEeC--CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceE
Confidence 3221 1112256788 47788988874 45666666554444444431123333444446789999987 45666
Q ss_pred EEEccCCceEEEEecCCCCCcccc
Q psy5792 349 SMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 349 ~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.++.+|....+++-.-....|.++
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~ 260 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSI 260 (370)
T ss_pred EEecCCCCCceEeeccccCCcccc
Confidence 788887655555544444455544
No 121
>KOG0268|consensus
Probab=90.00 E-value=6.4 Score=37.30 Aligned_cols=199 Identities=10% Similarity=0.106 Sum_probs=110.6
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
.++.+++..+ |+...+++... ..+ .+-+...+++-.. .+.+|-|.-..-.|+-...+ ....-..
T Consensus 121 ~~~tvgdDKt--vK~wk~~~~p~---~ti---lg~s~~~gIdh~~-~~~~FaTcGe~i~IWD~~R~--~Pv~sms----- 184 (433)
T KOG0268|consen 121 SFFTVGDDKT--VKQWKIDGPPL---HTI---LGKSVYLGIDHHR-KNSVFATCGEQIDIWDEQRD--NPVSSMS----- 184 (433)
T ss_pred ceEEecCCcc--eeeeeccCCcc---eee---ecccccccccccc-ccccccccCceeeecccccC--Cccceee-----
Confidence 3566666665 77776665422 111 2223345555443 45566554332234333222 2222222
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
-+......+.+.+..-+|.-+-...+.|...++.-.. .+.++.. -.+.+|+-+| +++.|.+-.. ...++..+|
T Consensus 185 --wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnP-eafnF~~a~E-D~nlY~~Dm 258 (433)
T KOG0268|consen 185 --WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNP-EAFNFVAANE-DHNLYTYDM 258 (433)
T ss_pred --cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee--ccccceecCc-cccceeeccc-cccceehhh
Confidence 2444567788888888887777777889888886542 2333322 3589999999 8999998643 467777766
Q ss_pred CCCCeEEEEecC-CCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCcccc
Q psy5792 309 DGKKQTILAQEI-IMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLD 372 (377)
Q Consensus 309 dG~~~~~l~~~~-~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~ 372 (377)
.--.+..-+..+ ......+... .+|+=+++-+ ...+|.....+.+..+.+.....+.|-|.+
T Consensus 259 R~l~~p~~v~~dhvsAV~dVdfs-ptG~Efvsgs-yDksIRIf~~~~~~SRdiYhtkRMq~V~~V 321 (433)
T KOG0268|consen 259 RNLSRPLNVHKDHVSAVMDVDFS-PTGQEFVSGS-YDKSIRIFPVNHGHSRDIYHTKRMQHVFCV 321 (433)
T ss_pred hhhcccchhhcccceeEEEeccC-CCcchhcccc-ccceEEEeecCCCcchhhhhHhhhheeeEE
Confidence 532222222211 1111122222 2355556666 667777777777766666666666666654
No 122
>KOG0285|consensus
Probab=89.84 E-value=18 Score=34.33 Aligned_cols=68 Identities=10% Similarity=0.160 Sum_probs=45.3
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCeEEE-EcCCCCceEEEc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSIN 85 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~ly~-td~~~~~I~~~~ 85 (377)
.++++++++|+.+++ |.+-+....|...|+... ..++. +......|++|..-.-|. +-.....|...|
T Consensus 151 lgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkltlt--Ghi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTLT--GHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred cceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEeec--chhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 368999999998644 456666788888899877 44443 567788999994443333 223444555556
No 123
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.38 E-value=22 Score=34.53 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P 324 (377)
.+.||++.. .+.+...++..... +-...+..+..++++ .+.||+.+. ..++...+.. |+.....-...-...
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~--~W~~~~~~~~~~~~~--~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQI--VWKREYGSVNDFAVD--GGRIYLVDQ--NDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCE--EEeecCCCccCcEEE--CCEEEEEcC--CCeEEEEECCCCcEEEcccccCCCcc
Confidence 578888765 36788888754321 111123334455663 689999874 4688888775 322111100000111
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
...++ .+++||..+. .+.|..++.+.+
T Consensus 329 ~sp~v--~~g~l~v~~~--~G~l~~ld~~tG 355 (394)
T PRK11138 329 TAPVL--YNGYLVVGDS--EGYLHWINREDG 355 (394)
T ss_pred cCCEE--ECCEEEEEeC--CCEEEEEECCCC
Confidence 22333 3578888875 467888877544
No 124
>KOG0272|consensus
Probab=88.54 E-value=25 Score=34.10 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=112.0
Q ss_pred CCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCC
Q psy5792 58 AAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLS 134 (377)
Q Consensus 58 ~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~ 134 (377)
...|..... .++.+..|-...+....-+ .+++...++....+-.+-.+++|.. +..|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~----------------~~~~---- 233 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD----------------SDLN---- 233 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCC----------------Cccc----
Confidence 445655443 6778888887778888888 7887777777666633333456642 1111
Q ss_pred CccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCC-CcEEEE
Q psy5792 135 KVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDH-GTISRT 212 (377)
Q Consensus 135 ~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~-~~I~~~ 212 (377)
+.+....|.++-..++.... +.-+. ...+...++|++.+++|-=+.... =+++
T Consensus 234 ------------------lat~s~Dgtvklw~~~~e~~-----l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW-- 288 (459)
T KOG0272|consen 234 ------------------LATASADGTVKLWKLSQETP-----LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW-- 288 (459)
T ss_pred ------------------eeeeccCCceeeeccCCCcc-----hhhhhcchhhheeeeecCCCceeeecccccchhhc--
Confidence 11222222344444444311 11112 234688899999766665443321 1232
Q ss_pred EcCCCCcEEEEeccccCCCCC-CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCe
Q psy5792 213 HRDGTGRENIIEYVETGDPTP-VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291 (377)
Q Consensus 213 ~~~G~~~~~i~~~~~~~~~~~-~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ 291 (377)
++.. ..+.+.. ++ -....+||+.+ .|.|--|-.....=.+=++....+..++.+.+....+++.+| +|+
T Consensus 289 D~~t-k~ElL~Q-------EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsP-NGy 358 (459)
T KOG0272|consen 289 DLET-KSELLLQ-------EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSP-NGY 358 (459)
T ss_pred cccc-chhhHhh-------cccccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECC-Cce
Confidence 3331 2233332 22 33488899985 677766655433223346655555566666788889999998 899
Q ss_pred EEEEecCC-CCeEEEEecCC
Q psy5792 292 LFWSESGK-IPLIARAGLDG 310 (377)
Q Consensus 292 lywtd~g~-~~~I~r~~ldG 310 (377)
..-|-.++ ..+|+...+..
T Consensus 359 ~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred EEeecCCCCcEEEeeecccc
Confidence 88886543 34666655443
No 125
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.40 E-value=25 Score=34.04 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=73.7
Q ss_pred cEEEEEeCCC-CeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 150 DFILFSVNSG-YDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 150 ~~l~~s~~~~-~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
.+|+.++.++ -.+..++|+.... .| +...++ .+..|.-+.+.+..+|+.. ....+.+++++....+.+...
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i--~Q-LTdg~g-~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~--- 120 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEI--TQ-LTDGPG-DNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEV--- 120 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EE--EE----SS--B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE----
T ss_pred EEEEEeccCCCcceEEEEcccCEE--EE-CccCCC-CCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEEC---
Confidence 3555555221 2488888887643 21 211111 2222444556688887765 346899999987665555541
Q ss_pred CCCCCCCCcceEE-EeccCCeEEEEc----------------------CCCCEEEEEEcCCCeEEEEeeCCCCCceeEEE
Q psy5792 229 GDPTPVDQFTDIA-VDWIAQNIYWSD----------------------PKENVIEVARLTGQYRYVLISGGVDQPSALAV 285 (377)
Q Consensus 229 ~~~~~~~~p~~ia-vD~~~~~lYwtd----------------------~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iav 285 (377)
+.... ..+-. ++. .+.+++.- .-..+|..+++.+...++++... ..-.-+-.
T Consensus 121 --p~~~~-g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~f 195 (386)
T PF14583_consen 121 --PDDWK-GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQF 195 (386)
T ss_dssp ---TTEE-EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEE
T ss_pred --Ccccc-cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCccc
Confidence 01111 11222 221 23232211 01258999999988888887753 22223333
Q ss_pred cCCC-CeEEEEecC---C-CCeEEEEecCCCCeEEEEec
Q psy5792 286 DPES-GYLFWSESG---K-IPLIARAGLDGKKQTILAQE 319 (377)
Q Consensus 286 dp~~-g~lywtd~g---~-~~~I~r~~ldG~~~~~l~~~ 319 (377)
.|.. ..|-++..| . ..||+.++.||++.+.+...
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~ 234 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR 234 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC
Confidence 3332 355566554 2 35999999999988776543
No 126
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=88.37 E-value=20 Score=32.71 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=86.2
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcE-EEEeccccCCC------CCCCCcceEEEeccCCe--EEEEcCCCCEEEEEEcCC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRE-NIIEYVETGDP------TPVDQFTDIAVDWIAQN--IYWSDPKENVIEVARLTG 266 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~-~i~~~~~~~~~------~~~~~p~~iavD~~~~~--lYwtd~~~~~I~~~~~~g 266 (377)
++.||+--..+..|.|.++...... ...- ..+... ..-..=-++|+|. +|. ||-+....+.|.+..+|-
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L-~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~ 155 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARREL-PGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDP 155 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEEC-CccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCc
Confidence 7899999888899999999854332 1111 000000 0001134799993 553 455566667899988886
Q ss_pred CeEEEE--eeCCCCCc---eeEEEcCCCCeEEEEecCC--CCeEEEE-ecC-CCCe--EEEEecCCCCceEEEEeCCCCE
Q psy5792 267 QYRYVL--ISGGVDQP---SALAVDPESGYLFWSESGK--IPLIARA-GLD-GKKQ--TILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 267 ~~~~~l--~~~~~~~P---~~iavdp~~g~lywtd~g~--~~~I~r~-~ld-G~~~--~~l~~~~~~~P~glalD~~~~~ 335 (377)
....+. ..+.+.++ .+..+ =|.||.++... ..+|.-+ ++. ++.. .+..........-|.-++.+++
T Consensus 156 ~tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~ 232 (250)
T PF02191_consen 156 ETLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKK 232 (250)
T ss_pred ccCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCe
Confidence 543221 12233333 34555 47999999653 2455433 444 2221 1222223455667888999999
Q ss_pred EEEEEeCCCCeEEEEE
Q psy5792 336 VYWCYSVGSNVLESMD 351 (377)
Q Consensus 336 LYw~d~~~~~~i~~~~ 351 (377)
||.=|. +...++.+.
T Consensus 233 LY~wd~-G~~v~Y~v~ 247 (250)
T PF02191_consen 233 LYAWDN-GYQVTYDVR 247 (250)
T ss_pred EEEEEC-CeEEEEEEE
Confidence 998888 555554443
No 127
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.21 E-value=25 Score=33.67 Aligned_cols=145 Identities=16% Similarity=0.237 Sum_probs=80.0
Q ss_pred EEEEEECCCCEEE--EEEcCCC--cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEe-ccCCeEEEEcCCC--CEEE
Q psy5792 188 AKVDFHAAEDYIY--WVDIDHG--TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD-WIAQNIYWSDPKE--NVIE 260 (377)
Q Consensus 188 ~~l~~d~~~~~ly--~sd~~~~--~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD-~~~~~lYwtd~~~--~~I~ 260 (377)
..+.....+..|+ |.+...+ .+..++......+.+.. .....-+.....+.+- ..++.++|.-... ..|.
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~---e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE---ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE---EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred ccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE---ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 3344433344344 4454444 45556665444444443 1111223223344432 3455555554343 4899
Q ss_pred EEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC---CCCeEEEEecC-CCCeEEEEecCCCCceEEEEeCCCCEE
Q psy5792 261 VARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG---KIPLIARAGLD-GKKQTILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 261 ~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g---~~~~I~r~~ld-G~~~~~l~~~~~~~P~glalD~~~~~L 336 (377)
..+.+|...+.|..+...-=.-+.+|+.++.||++-.. ....+++++++ +...+.|.... ..-...++.+..+.+
T Consensus 264 ~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~-~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 264 LYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED-GDHYSASFSPDGKYY 342 (353)
T ss_dssp EEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS-STTEEEEE-TTSSEE
T ss_pred EEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC-CCceEEEECCCCCEE
Confidence 99999998766655543322458899999999999754 25689999999 77776655542 221466776544433
No 128
>smart00284 OLF Olfactomedin-like domains.
Probab=87.38 E-value=23 Score=32.34 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred CCEEEEEEcCCCcEEEEEcCCCCcE--EEEeccccCCCCC------CCCcceEEEeccCCe--EEEEcCCCCEEEEEEcC
Q psy5792 196 EDYIYWVDIDHGTISRTHRDGTGRE--NIIEYVETGDPTP------VDQFTDIAVDWIAQN--IYWSDPKENVIEVARLT 265 (377)
Q Consensus 196 ~~~ly~sd~~~~~I~~~~~~G~~~~--~i~~~~~~~~~~~------~~~p~~iavD~~~~~--lYwtd~~~~~I~~~~~~ 265 (377)
++.||+....+..|.|.++...... ..+. .+.-... -..=-++|+|. +|. ||-|....+.|.+..++
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp--~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~~~~g~ivvSkLn 159 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLN--GAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATEQNAGKIVISKLN 159 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecC--ccccccccccccCCCccEEEEEcC-CceEEEEeccCCCCCEEEEeeC
Confidence 7899998888889999999854322 1111 0000000 01124799994 453 56667777899999998
Q ss_pred CCeEEEE--eeCCCCCc---eeEEEcCCCCeEEEEecC--CCCeEEEE-ecCCCC-eEEEE--ecCCCCceEEEEeCCCC
Q psy5792 266 GQYRYVL--ISGGVDQP---SALAVDPESGYLFWSESG--KIPLIARA-GLDGKK-QTILA--QEIIMPIKDITLDRKNK 334 (377)
Q Consensus 266 g~~~~~l--~~~~~~~P---~~iavdp~~g~lywtd~g--~~~~I~r~-~ldG~~-~~~l~--~~~~~~P~glalD~~~~ 334 (377)
-....+. -.+...++ .++.| =|.||.++.. ...+|.-+ +..... ....+ .+....-.-|.-.+.++
T Consensus 160 p~tL~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~ 236 (255)
T smart00284 160 PATLTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDR 236 (255)
T ss_pred cccceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCC
Confidence 7554332 22233333 45555 3799999852 24566544 444322 22212 11223334477788889
Q ss_pred EEEEEEeCCCCeEE
Q psy5792 335 RVYWCYSVGSNVLE 348 (377)
Q Consensus 335 ~LYw~d~~~~~~i~ 348 (377)
+||.=|. +.-.++
T Consensus 237 ~LY~wdn-g~~l~Y 249 (255)
T smart00284 237 KLYAWNN-GHLVHY 249 (255)
T ss_pred eEEEEeC-CeEEEE
Confidence 9998877 443333
No 129
>KOG0641|consensus
Probab=86.98 E-value=22 Score=31.66 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=70.3
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEeccccCCCCCC--CCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYVETGDPTPV--DQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~~~~~~~~~--~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
++.++ |.| ++.+|.+-.....|+-.++.-.. ..++-. ..+..++ ....+++||+ +++|..+-.....-+..
T Consensus 185 hilal-ysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~---~~~~~glessavaav~vdp-sgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 185 HILAL-YSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDN---DFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLY 258 (350)
T ss_pred cEEEE-EEe-cCcEEEccCCCceEEEEeeeccceeeeccC---cccCCCcccceeEEEEECC-CcceeeeccCCCceEEE
Confidence 34444 344 67788776666666655554211 111111 0000222 2377899997 67788888877788888
Q ss_pred EcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 263 RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 263 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
++.|.....-........+.+-+.|..-+|.-..+ ..+|...++.|.
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~sy--d~~ikltdlqgd 305 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY--DMKIKLTDLQGD 305 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecc--cceEEEeecccc
Confidence 88886543222223455788888885555554443 468888888875
No 130
>KOG0308|consensus
Probab=86.09 E-value=44 Score=34.33 Aligned_cols=200 Identities=12% Similarity=0.050 Sum_probs=118.9
Q ss_pred cCCcCCCcC---CCcEEEEEeCCCCeEEEEEcCCCCcee---eEEEE--ec--CCCCceEEEEEECCCCEEEEEEcCCCc
Q psy5792 139 AAKVDFHAG---ISDFILFSVNSGYDIMGIKYNKNESKV---TQVLG--PL--SKVSLAAKVDFHAAEDYIYWVDIDHGT 208 (377)
Q Consensus 139 ~~G~~~C~~---~~~~l~~s~~~~~~I~~~~l~~~~~~~---~~~~~--~~--~~~~~~~~l~~d~~~~~ly~sd~~~~~ 208 (377)
...|.+|.+ .+.+++.+.+-.++|.--+++....+. .+.+. .+ ..-..++++|... .+.++++-...+-
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccc
Confidence 456778874 355677776655567777776431100 00000 00 1112356776654 4567666544455
Q ss_pred EEEEEcCCC-CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 209 ISRTHRDGT-GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 209 I~~~~~~G~-~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
|...+.... ....+. ....+++.|-++.. |+=..+-+..++|..-++.-+.+..-+...-...+++..+|
T Consensus 195 lr~wDprt~~kimkLr--------GHTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLR--------GHTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred eEEeccccccceeeee--------ccccceEEEEEcCC-CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 555555422 222222 23456888888854 44446777788999999988765433332344589999999
Q ss_pred CCCeEEEEecCCCCeEEEEecCCC-CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 288 ESGYLFWSESGKIPLIARAGLDGK-KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 288 ~~g~lywtd~g~~~~I~r~~ldG~-~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.-.++|..+. ...|+|.+|... ..+.|..++ ....-+.++...+.+ |+-. ....|.+-...
T Consensus 266 sf~~vYsG~r--d~~i~~Tdl~n~~~~tlick~d-aPv~~l~~~~~~~~~-WvtT-tds~I~rW~~~ 327 (735)
T KOG0308|consen 266 SFTHVYSGGR--DGNIYRTDLRNPAKSTLICKED-APVLKLHLHEHDNSV-WVTT-TDSSIKRWKLE 327 (735)
T ss_pred CcceEEecCC--CCcEEecccCCchhheEeecCC-CchhhhhhccccCCc-eeee-ccccceecCCc
Confidence 8899999875 579999999874 444444432 333446665444555 7777 77777776554
No 131
>KOG1274|consensus
Probab=86.08 E-value=52 Score=35.14 Aligned_cols=150 Identities=15% Similarity=0.180 Sum_probs=91.2
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
-..+.+|+.+..|+.++. ++.|...+.... ..+.+-. .-....+||.+ .+.|.+-..++.|.+...
T Consensus 16 ~t~i~~d~~gefi~tcgs-dg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~---s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGS-DGDIRKWKTNSDEEEPETIDI--------SGELVSSIACY---SNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred eEEEEEcCCCCEEEEecC-CCceEEeecCCcccCCchhhc--------cCceeEEEeec---ccceEEeeccceEEEeeC
Confidence 467888998888887764 566666655432 2223221 11236677776 336677777889999998
Q ss_pred CCCeEEEEeeCCCCC-ceeEEEcCCCCeEEEEecCCCCeEEEEecCC-CCeEEEEecCCCCceEEEEeCCCCEEEEEEeC
Q psy5792 265 TGQYRYVLISGGVDQ-PSALAVDPESGYLFWSESGKIPLIARAGLDG-KKQTILAQEIIMPIKDITLDRKNKRVYWCYSV 342 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~-P~~iavdp~~g~lywtd~g~~~~I~r~~ldG-~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~ 342 (377)
+......++.- +.- .+.++++. +|.+-.+-. +.-.|...+++. +..+++-.- -....+|.+|+.++.|-.+.
T Consensus 84 ps~~~~~iL~R-ftlp~r~~~v~g-~g~~iaags-dD~~vK~~~~~D~s~~~~lrgh-~apVl~l~~~p~~~fLAvss-- 157 (933)
T KOG1274|consen 84 PSGEEDTILAR-FTLPIRDLAVSG-SGKMIAAGS-DDTAVKLLNLDDSSQEKVLRGH-DAPVLQLSYDPKGNFLAVSS-- 157 (933)
T ss_pred CCCCccceeee-eeccceEEEEec-CCcEEEeec-CceeEEEEeccccchheeeccc-CCceeeeeEcCCCCEEEEEe--
Confidence 87665555543 333 48889985 444433322 345677777654 444444332 24456788887655555544
Q ss_pred CCCeEEEEEccC
Q psy5792 343 GSNVLESMDYSG 354 (377)
Q Consensus 343 ~~~~i~~~~~~G 354 (377)
..+.|...+++-
T Consensus 158 ~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 158 CDGKVQIWDLQD 169 (933)
T ss_pred cCceEEEEEccc
Confidence 577888887763
No 132
>KOG0318|consensus
Probab=85.60 E-value=42 Score=33.62 Aligned_cols=101 Identities=16% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
..+.+.+|++.+.+..|| +-...+.|..-+......-.+ -.....+..+++.+. .+.||-.-|. ..+.+..+.+.
T Consensus 319 HnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~~~~~t~g~D--d~l~~~~~~~~ 394 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-SGELFTIGWD--DTLRVISLKDN 394 (603)
T ss_pred cccceeEEEEcCCCCEEE-eeccCceEEEEecCCccccccccccccceEEEEeecC-CCcEEEEecC--CeEEEEecccC
Confidence 456688999987666565 444557777666544332223 234456678888873 6888887764 46666655332
Q ss_pred C--eEEEEecCCCCceEEEEeCCCCEEEE
Q psy5792 312 K--QTILAQEIIMPIKDITLDRKNKRVYW 338 (377)
Q Consensus 312 ~--~~~l~~~~~~~P~glalD~~~~~LYw 338 (377)
. ....+.- -.||.|+++...++.+..
T Consensus 395 ~~t~~~~~~l-g~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 395 GYTKSEVVKL-GSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred cccccceeec-CCCceeEEEcCCCCEEEE
Confidence 2 2222222 246777777644333333
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=85.48 E-value=35 Score=32.70 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC-CCCeEEEEecCCCCc
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD-GKKQTILAQEIIMPI 324 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld-G~~~~~l~~~~~~~P 324 (377)
++.+|.+... +.+...++..... +-......+...+++ +++||+.+. .+.|...+.+ |..........-...
T Consensus 241 ~~~vy~~~~~-g~l~a~d~~tG~~--~W~~~~~~~~~p~~~--~~~vyv~~~--~G~l~~~d~~tG~~~W~~~~~~~~~~ 313 (377)
T TIGR03300 241 GGQVYAVSYQ-GRVAALDLRSGRV--LWKRDASSYQGPAVD--DNRLYVTDA--DGVVVALDRRSGSELWKNDELKYRQL 313 (377)
T ss_pred CCEEEEEEcC-CEEEEEECCCCcE--EEeeccCCccCceEe--CCEEEEECC--CCeEEEEECCCCcEEEccccccCCcc
Confidence 6788887653 6788888743321 111112234455553 689999873 4788888874 432221111000011
Q ss_pred eEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 325 KDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 325 ~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
...++ .+++||..+. .+.|..++.+
T Consensus 314 ssp~i--~g~~l~~~~~--~G~l~~~d~~ 338 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDF--EGYLHWLSRE 338 (377)
T ss_pred ccCEE--ECCEEEEEeC--CCEEEEEECC
Confidence 12233 3578888765 4678777775
No 134
>KOG1274|consensus
Probab=85.18 E-value=57 Score=34.84 Aligned_cols=271 Identities=10% Similarity=0.051 Sum_probs=135.0
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCC--c-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEV--K-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG--~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.-+++++|+++.+|+..+++ +.|+..+-.. . .++|- ....-..+++.+.+ .|.+-..++.|.+.. .+|+.-.
T Consensus 15 G~t~i~~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSD-GDIRKWKTNSDEEEPETID--ISGELVSSIACYSN-HFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred ceEEEEEcCCCCEEEEecCC-CceEEeecCCcccCCchhh--ccCceeEEEeeccc-ceEEeeccceEEEeeCCCCCccc
Confidence 46789999999988777664 3455543221 2 44442 13445667777776 455556678899888 7776655
Q ss_pred EEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCc
Q psy5792 93 VLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172 (377)
Q Consensus 93 ~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~ 172 (377)
++..-..|.....++.++. .+.+.++...|..++++....
T Consensus 91 iL~Rftlp~r~~~v~g~g~----------------------------------------~iaagsdD~~vK~~~~~D~s~ 130 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGK----------------------------------------MIAAGSDDTAVKLLNLDDSSQ 130 (933)
T ss_pred eeeeeeccceEEEEecCCc----------------------------------------EEEeecCceeEEEEeccccch
Confidence 5544333322222222211 222222222366677665544
Q ss_pred eeeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCc-ceEEEeccCCeEE
Q psy5792 173 KVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF-TDIAVDWIAQNIY 250 (377)
Q Consensus 173 ~~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p-~~iavD~~~~~lY 250 (377)
+ ..+.+ -....+++||+.++.|-.++ .+|.+...+++....................++ .-+|-.+.++.+-
T Consensus 131 ~-----~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 131 E-----KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred h-----eeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 1 11122 23467899999666666555 568888888763221111110000000111222 2344555555543
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCC-CC-CceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCe----EEEEec-CCCC
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGG-VD-QPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ----TILAQE-IIMP 323 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~-~~-~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~----~~l~~~-~~~~ 323 (377)
+. ...+.|.+++.+|-...-.+... .. .-..++.+|.+ .|.+-....+.|-..+.+--.+ ..+.-. =-.+
T Consensus 205 ~~-~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 205 VP-PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPN 281 (933)
T ss_pred ee-ccCCeEEEEccCCceeheeecccccccceEEEEEcCCC--cEEeeeccCCcEEEEecccchhccccceeEEEecCCC
Confidence 32 33467888888876543333322 11 14667777742 2444332345665555552111 111111 0123
Q ss_pred ceEEEEeCCCCEEEEEE
Q psy5792 324 IKDITLDRKNKRVYWCY 340 (377)
Q Consensus 324 P~glalD~~~~~LYw~d 340 (377)
.++|+++...++++++.
T Consensus 282 ~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 282 ANAITLITALGTLGVSP 298 (933)
T ss_pred CCeeEEEeeccccccCh
Confidence 45677766666666543
No 135
>KOG0266|consensus
Probab=84.72 E-value=45 Score=33.24 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=88.4
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
.+++....+.|+..++..... .+..+ ....-+.+++|.+.+ .+..+-...+.|+..++........+.
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~----~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~------ 285 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGR----NLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLK------ 285 (456)
T ss_pred EEEEecCCceEEEeeccCCCe----EEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeee------
Confidence 455555555677777722211 12222 223447899999977 677776677888888887544333333
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE--EEeeCCCCCc---eeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY--VLISGGVDQP---SALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~--~l~~~~~~~P---~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
..-....++++.. .++++++....+.|.+-++...... ..+.. ...| +.+..+|...+++..-. ...+.-
T Consensus 286 -~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~--d~~~~~ 360 (456)
T KOG0266|consen 286 -GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASL--DRTLKL 360 (456)
T ss_pred -ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecC--CCeEEE
Confidence 3445688999995 6777788777899999999887732 23332 3334 88888885555555432 344444
Q ss_pred EecC
Q psy5792 306 AGLD 309 (377)
Q Consensus 306 ~~ld 309 (377)
.++.
T Consensus 361 w~l~ 364 (456)
T KOG0266|consen 361 WDLR 364 (456)
T ss_pred EEcc
Confidence 4444
No 136
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.88 E-value=34 Score=33.18 Aligned_cols=121 Identities=11% Similarity=0.031 Sum_probs=64.5
Q ss_pred eEEEEcCC-CCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCC-ce
Q psy5792 248 NIYWSDPK-ENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMP-IK 325 (377)
Q Consensus 248 ~lYwtd~~-~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~-P~ 325 (377)
.||.++.. ...++.++|+....+.|........-|..+.|....+||... ..++.+++++....+++..-.-.+ ..
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~--~~~l~~vdL~T~e~~~vy~~p~~~~g~ 127 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN--GRSLRRVDLDTLEERVVYEVPDDWKGY 127 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET--TTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC--CCeEEEEECCcCcEEEEEECCcccccc
Confidence 35555543 346888899888877777654343446777788899988753 469999999987776666532111 22
Q ss_pred EEE-EeCCCCEEEEEEe--------------------CCCCeEEEEEccCCceEEEEecCC-CCCcc
Q psy5792 326 DIT-LDRKNKRVYWCYS--------------------VGSNVLESMDYSGGSKMQLKLSSN-IKNAL 370 (377)
Q Consensus 326 gla-lD~~~~~LYw~d~--------------------~~~~~i~~~~~~G~~~~~~~~~~~-~~~p~ 370 (377)
|-. ++.....+.-++. .-..+|..+++.++..++++.... +.|+.
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~ 194 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQ 194 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcc
Confidence 322 3433333322211 023589999999998888876443 56653
No 137
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.62 E-value=38 Score=33.42 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=35.4
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC-C-----------CCCCCCcceEEEeccCCeEEEEc
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG-D-----------PTPVDQFTDIAVDWIAQNIYWSD 253 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~-~-----------~~~~~~p~~iavD~~~~~lYwtd 253 (377)
.++.|.+...+..||+++...|.|+..++.....-.++...... . ..-.+.|.-|.+-+.+++||||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46677777779999999999999999998754333332210000 0 01113477778888899999998
Q ss_pred CC
Q psy5792 254 PK 255 (377)
Q Consensus 254 ~~ 255 (377)
+-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 63
No 138
>KOG0310|consensus
Probab=83.45 E-value=49 Score=32.67 Aligned_cols=176 Identities=10% Similarity=0.009 Sum_probs=100.5
Q ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 149 SDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 149 ~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
+.-|+.+...+|-|+.+++..... +-.+ +......-+-|.+.++.++.+-.....+...++++...+.-+.
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~i-----LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--- 150 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVI-----LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--- 150 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHH-----HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec---
Confidence 345666666667788888544211 0001 1112244566677788888876555566666776544221222
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
..-.-.+..++-+.++.|.+|-.-.++|...+..... ..+.+-+-..|-.-.+--.+|-++.+-.| +.+...+
T Consensus 151 ----~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWD 223 (487)
T KOG0310|consen 151 ----GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG--NSVKVWD 223 (487)
T ss_pred ----CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEE
Confidence 2223488889988999999999999999988887653 22333234455444443357778877654 5666667
Q ss_pred cCCCCeEEEEecC-CCCceEEEEeCCCCEEEEE
Q psy5792 308 LDGKKQTILAQEI-IMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 308 ldG~~~~~l~~~~-~~~P~glalD~~~~~LYw~ 339 (377)
+-+.++..--..+ ....+.|.+-..+.+|+-.
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence 6643332211111 1234556665555666654
No 139
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=82.69 E-value=38 Score=30.88 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=59.4
Q ss_pred EcCCCcEEEEEcCCCC--cEEEEeccccCCCCCCCCcceEEE--eccCCeEEEE-cCCCCEEEEEEc----CCCeEEEEe
Q psy5792 203 DIDHGTISRTHRDGTG--RENIIEYVETGDPTPVDQFTDIAV--DWIAQNIYWS-DPKENVIEVARL----TGQYRYVLI 273 (377)
Q Consensus 203 d~~~~~I~~~~~~G~~--~~~i~~~~~~~~~~~~~~p~~iav--D~~~~~lYwt-d~~~~~I~~~~~----~g~~~~~l~ 273 (377)
|...++|....+|+.. .+.+. ....+...++..|+|+++ ++.++-.|+- +...+.|....+ +|+....++
T Consensus 120 dR~~~~i~~y~Idp~~~~L~sit-D~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v 198 (364)
T COG4247 120 DRQNDKIVFYKIDPNPQYLESIT-DSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV 198 (364)
T ss_pred cccCCeEEEEEeCCCccceeecc-CCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee
Confidence 3345566655555432 22222 222223356778999988 4444544432 333466776665 233333344
Q ss_pred eC--CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 274 SG--GVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 274 ~~--~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
.. --.+-.|+..|-..|.||.++. .-.||+...+
T Consensus 199 R~fk~~tQTEG~VaDdEtG~LYIaeE--dvaiWK~~Ae 234 (364)
T COG4247 199 RQFKIPTQTEGMVADDETGFLYIAEE--DVAIWKYEAE 234 (364)
T ss_pred EeeecCCcccceeeccccceEEEeec--cceeeecccC
Confidence 32 1235689999999999999985 4678887654
No 140
>KOG4649|consensus
Probab=82.58 E-value=39 Score=30.93 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=67.4
Q ss_pred EEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce----EEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 190 VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD----IAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~----iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
-++++..+.||++-. .|.+.+++.+-....++..+... ..-++.|.. +.+-.++|+|---+.....|++....
T Consensus 141 P~i~~g~~sly~a~t-~G~vlavt~~~~~~~~~w~~~~~--~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~ 217 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAIT-AGAVLAVTKNPYSSTEFWAATRF--GPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATK 217 (354)
T ss_pred ceecCCCceEEEEec-cceEEEEccCCCCcceehhhhcC--CccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCC
Confidence 345666889998874 57777777654322333221000 011223221 11211234443333333445555555
Q ss_pred CCe----------EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCE
Q psy5792 266 GQY----------RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335 (377)
Q Consensus 266 g~~----------~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~ 335 (377)
|.. ++++.-. .+--=++.-|..|.|-|.+. .+...++.++..-+-.+.+-...+|.=|+.-...++
T Consensus 218 GpIf~~Pc~s~Ps~q~i~~~--~~~Cf~~~~p~~ghL~w~~~--~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgk 293 (354)
T KOG4649|consen 218 GPIFMEPCESRPSCQQISLE--NENCFCAPLPIAGHLLWATQ--SGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGK 293 (354)
T ss_pred CceecccccCCCcceEEEEe--cCCeEEEeccccceEEEEec--CCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCc
Confidence 531 1222111 11223556677899999984 345556666654443333333333444555555566
Q ss_pred EEEE
Q psy5792 336 VYWC 339 (377)
Q Consensus 336 LYw~ 339 (377)
+.+.
T Consensus 294 v~il 297 (354)
T KOG4649|consen 294 VMIL 297 (354)
T ss_pred EEEE
Confidence 6655
No 141
>KOG0286|consensus
Probab=82.56 E-value=41 Score=31.19 Aligned_cols=137 Identities=10% Similarity=0.049 Sum_probs=86.5
Q ss_pred EEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCce
Q psy5792 202 VDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPS 281 (377)
Q Consensus 202 sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~ 281 (377)
+.....+.--.++....+...+. ...+.+-+|++-+.+.|.|++-.-......-++....+..-+.+......
T Consensus 161 T~SGD~TCalWDie~g~~~~~f~-------GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN 233 (343)
T KOG0286|consen 161 TGSGDMTCALWDIETGQQTQVFH-------GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN 233 (343)
T ss_pred ecCCCceEEEEEcccceEEEEec-------CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc
Confidence 33344455555665434444444 35566888888888899999987766666666655554444444556688
Q ss_pred eEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecC--CCCceEEEEeCCCCEEEEEEeCCCCeEEE
Q psy5792 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCYSVGSNVLES 349 (377)
Q Consensus 282 ~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~--~~~P~glalD~~~~~LYw~d~~~~~~i~~ 349 (377)
++.+.| +|+-|.|-. +.......++.......+.+.. ....+++++. ..+||.++-. ...++..
T Consensus 234 sv~ffP-~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy-~d~~c~v 299 (343)
T KOG0286|consen 234 SVRFFP-SGDAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGY-DDFTCNV 299 (343)
T ss_pred eEEEcc-CCCeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeee-cCCceeE
Confidence 999998 788888854 2455666666655554444442 3445778885 5688888755 4433333
No 142
>KOG0318|consensus
Probab=81.63 E-value=61 Score=32.50 Aligned_cols=179 Identities=14% Similarity=0.041 Sum_probs=97.1
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC--cEEEEeccccC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--RENIIEYVETG 229 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--~~~i~~~~~~~ 229 (377)
.+++....|.|..-+...... ..+.+-.....+.+++... .+.||-.. ..+.++++.+.+.. ....+.
T Consensus 334 ~i~SgsyDG~I~~W~~~~g~~---~~~~g~~h~nqI~~~~~~~-~~~~~t~g-~Dd~l~~~~~~~~~~t~~~~~~----- 403 (603)
T KOG0318|consen 334 TIYSGSYDGHINSWDSGSGTS---DRLAGKGHTNQIKGMAASE-SGELFTIG-WDDTLRVISLKDNGYTKSEVVK----- 403 (603)
T ss_pred EEEeeccCceEEEEecCCccc---cccccccccceEEEEeecC-CCcEEEEe-cCCeEEEEecccCcccccceee-----
Confidence 344444444565554433222 1222222334466776653 25555443 45678887775432 222222
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE-cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR-LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~-~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
--.+|.++|+....+.+..+... .|...+ ..+-.. +. -..+|.++|+.|....+-+- |+..++....+
T Consensus 404 ---lg~QP~~lav~~d~~~avv~~~~--~iv~l~~~~~~~~---~~-~~y~~s~vAv~~~~~~vaVG--G~Dgkvhvysl 472 (603)
T KOG0318|consen 404 ---LGSQPKGLAVLSDGGTAVVACIS--DIVLLQDQTKVSS---IP-IGYESSAVAVSPDGSEVAVG--GQDGKVHVYSL 472 (603)
T ss_pred ---cCCCceeEEEcCCCCEEEEEecC--cEEEEecCCccee---ec-cccccceEEEcCCCCEEEEe--cccceEEEEEe
Confidence 22369999999655565555443 244444 222111 11 24569999999976655544 45678888888
Q ss_pred CCCCeEEE--EecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 309 DGKKQTIL--AQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 309 dG~~~~~l--~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
.|...... ..+-...++.++..+....|--+|. .+++.-.+..
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da--~rkvv~yd~~ 517 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA--SRKVVLYDVA 517 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEecc--CCcEEEEEcc
Confidence 88653222 1222456788888877777777776 3444444443
No 143
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.56 E-value=87 Score=33.62 Aligned_cols=194 Identities=8% Similarity=0.019 Sum_probs=98.4
Q ss_pred ccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE--CCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 19 ASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 19 ~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.+++.....+....+-...+.|...|+... ...+. .+....+++++. ++.+++|-..++.|...+ .++.....
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~--~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK--EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec--CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 344444433344444555677888887755 44442 445567888884 566777777778888888 55554444
Q ss_pred EecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCce
Q psy5792 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173 (377)
Q Consensus 94 ~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~ 173 (377)
+.....+..+....++ ..++++....|.|+..++.....
T Consensus 614 ~~~~~~v~~v~~~~~~----------------------------------------g~~latgs~dg~I~iwD~~~~~~- 652 (793)
T PLN00181 614 IKTKANICCVQFPSES----------------------------------------GRSLAFGSADHKVYYYDLRNPKL- 652 (793)
T ss_pred EecCCCeEEEEEeCCC----------------------------------------CCEEEEEeCCCeEEEEECCCCCc-
Confidence 4321112222221111 12333333344688887754321
Q ss_pred eeEEEEec-CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC----CcEEEEeccccCCCCCCCCcceEEEeccCCe
Q psy5792 174 VTQVLGPL-SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT----GRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248 (377)
Q Consensus 174 ~~~~~~~~-~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~ 248 (377)
.+..+ .....+..+.+. .+..+++-...+.|...++... ....+... . .....+..+++++. +.
T Consensus 653 ---~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--~---gh~~~i~~v~~s~~-~~ 721 (793)
T PLN00181 653 ---PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--M---GHTNVKNFVGLSVS-DG 721 (793)
T ss_pred ---cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--c---CCCCCeeEEEEcCC-CC
Confidence 01111 122345667765 3334445445677777766421 11111110 0 11223567888864 44
Q ss_pred EEEEcCCCCEEEEEEcCC
Q psy5792 249 IYWSDPKENVIEVARLTG 266 (377)
Q Consensus 249 lYwtd~~~~~I~~~~~~g 266 (377)
+..+-...++|.+.+...
T Consensus 722 ~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 722 YIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEEEEeCCCEEEEEECCC
Confidence 555666667777777654
No 144
>KOG4649|consensus
Probab=80.43 E-value=47 Score=30.43 Aligned_cols=129 Identities=9% Similarity=0.135 Sum_probs=62.6
Q ss_pred EEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC-EEEEEEcCCCe
Q psy5792 190 VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN-VIEVARLTGQY 268 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~-~I~~~~~~g~~ 268 (377)
+++|+..+.+||-..-.++|....+ ++. ++ +.+-..++.||+.+..++ +++.+..-+..
T Consensus 36 ~avd~~sG~~~We~ilg~RiE~sa~-------vvg--------df-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 36 IAVDPQSGNLIWEAILGVRIECSAI-------VVG--------DF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EEecCCCCcEEeehhhCceeeeeeE-------EEC--------CE-----EEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 4567778888886554444432111 111 11 444445677777777665 55544433321
Q ss_pred EEEEeeCCCCCceeEEEcCCCCeEEEE---------ecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEE
Q psy5792 269 RYVLISGGVDQPSALAVDPESGYLFWS---------ESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 269 ~~~l~~~~~~~P~~iavdp~~g~lywt---------d~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~ 339 (377)
. - .-..|+..|.||.. |......|++....|+- +..| +|++-.+.||++
T Consensus 96 k----------~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--------f~sP---~i~~g~~sly~a 153 (354)
T KOG4649|consen 96 K----------V-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--------FVSP---VIAPGDGSLYAA 153 (354)
T ss_pred c----------c-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--------eccc---eecCCCceEEEE
Confidence 1 0 01233334444443 32222344443333321 2222 344455677777
Q ss_pred EeCCCCeEEEEEccCCceEEEEe
Q psy5792 340 YSVGSNVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 340 d~~~~~~i~~~~~~G~~~~~~~~ 362 (377)
-. .+.+.+++.+-...+++..
T Consensus 154 ~t--~G~vlavt~~~~~~~~~w~ 174 (354)
T KOG4649|consen 154 IT--AGAVLAVTKNPYSSTEFWA 174 (354)
T ss_pred ec--cceEEEEccCCCCcceehh
Confidence 65 5666677766554455544
No 145
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=79.11 E-value=44 Score=29.31 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 26 SGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.++++|.. +..+.|..+|. +|+ +-+.-.......+ ..+.++.||+.... +.|..++ .+|+..-.
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGA--PVVDGGRVYVGTSD-GSLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSG--EEEETTEEEEEETT-SEEEEEETTTSCEEEE
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccce--eeecccccccccce-eeeEecccCCcceeee
Confidence 45688888 46788999997 777 4444211222222 36799999999843 4899999 88987654
No 146
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=79.01 E-value=74 Score=34.34 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=36.7
Q ss_pred CCCceEEEEeCCC-----CEEEEE-----EeCCCCeEEEEEccCCceEEEEecCCCCCcccccc
Q psy5792 321 IMPIKDITLDRKN-----KRVYWC-----YSVGSNVLESMDYSGGSKMQLKLSSNIKNALLDRK 374 (377)
Q Consensus 321 ~~~P~glalD~~~-----~~LYw~-----d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~~~ 374 (377)
+..|.|.+.||.+ +.+-++ +. ...+|.-+++.-+....|+.+..+.||--|+.
T Consensus 546 v~ap~gytfdh~ew~~~~~~~~vatl~n~~g-~h~ki~lv~~~~~~i~~l~eg~elwhp~~w~~ 608 (912)
T TIGR02171 546 VAAPAGYTFDHTEWVTGRSNLAVATLTNVNG-AHKKIALINLSDSKVTELVEGDELWHPCLWVE 608 (912)
T ss_pred ccCCCCccccchhhhcCCCceEEEEeecCCC-ccceEEEEEcCCCceEEeecccccccceeeee
Confidence 6779999999765 111111 11 34578888887777778888899999988853
No 147
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=78.82 E-value=52 Score=30.03 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=36.2
Q ss_pred EEEEEeCCCCeEEEEEcCCCCc-ee-eEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNES-KV-TQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD 215 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~-~~-~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~ 215 (377)
+-.+..+..|.|+.+.+-.... ++ +..+-.+.-.....|+..|...+.||++. +.-.||+...+
T Consensus 169 ~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIae-EdvaiWK~~Ae 234 (364)
T COG4247 169 YYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAE-EDVAIWKYEAE 234 (364)
T ss_pred EEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEee-ccceeeecccC
Confidence 3334444446788777632211 11 11111122223567888898999999997 45688886654
No 148
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.58 E-value=82 Score=32.14 Aligned_cols=63 Identities=11% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCeEEEEeCCCCcEEEEEcCC-cEEEEEeCC---CCC-------ceEEEEEECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEV-KVAKVVSMP---DAA-------QVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG-~~~~i~~~~---~~~-------~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
+++||+.+.. +.|.-+|... +...-.... ... ...++++.+++||+.+. .+.+..+| .+|+..
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-DARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-CCEEEEEECCCCCEE
Confidence 5688887664 5688888764 422221101 010 12456788999999875 45788888 678664
No 149
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.39 E-value=48 Score=29.37 Aligned_cols=175 Identities=14% Similarity=0.096 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceE
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
.|++.++.+.... .-.+++ ..+.+|=-.-..++.+|..-+..+.-++.+.+.- +.+-.. .--++-+||
T Consensus 69 ~ir~~~L~~gq~~---~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~--~~lg~~------~y~GeGWgL 136 (262)
T COG3823 69 KIRVSDLTTGQEI---FSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL--EELGRF------SYEGEGWGL 136 (262)
T ss_pred eeEEEeccCceEE---EEeecC-CccccccceeeccceEEEEEeccceeEEEChHHh--hhhccc------ccCCcceee
Confidence 3888888755321 111122 0122222222236788877777777777776631 222110 112356788
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEcCCC--eEEEEeeCC---CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEE
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARLTGQ--YRYVLISGG---VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTI 315 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~~g~--~~~~l~~~~---~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~ 315 (377)
+-| ..+|..+|.. ..+.--++..- ..++.+..+ ..+-+.+. -..|.||=.-| ...+|.|++.+......
T Consensus 137 t~d--~~~LimsdGs-atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE--~VdG~lyANVw-~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 137 TSD--DKNLIMSDGS-ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELE--WVDGELYANVW-QTTRIARIDPDSGRVVA 210 (262)
T ss_pred ecC--CcceEeeCCc-eEEEecCHHHhhhcceEEEEECCeeccccccee--eeccEEEEeee-eecceEEEcCCCCcEEE
Confidence 888 6667666654 23333333221 111222110 11111111 13677777666 35678877766433222
Q ss_pred EEe-c-----------CCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccC
Q psy5792 316 LAQ-E-----------IIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 316 l~~-~-----------~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G 354 (377)
-+. . ...-++|||-|+..+|+|.+-. .--.+..+.+.+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK-~wp~lfEVk~~~ 260 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK-LWPLLFEVKLDE 260 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC-cCceeEEEEecC
Confidence 111 1 1345899999999999999987 667777777664
No 150
>KOG0272|consensus
Probab=78.36 E-value=69 Score=31.18 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=63.7
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
...+.+++|++ +++..-|-...+.+...++.+....-++. ...+-+..+-+.+..|+...|-...+++..-+
T Consensus 345 ~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ip-------AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 345 IKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIP-------AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecc-------cccchhhheEecccCCeEEEEcccCcceeeec
Confidence 44578999998 67777777677777767776533222222 33445788889987888888888777777766
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeE
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~l 292 (377)
..+-.....+.+.-....++.+.+...+|
T Consensus 417 ~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 417 TRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred CCCcccchhhcCCccceEEEEeccCCceE
Confidence 55544332233334556677776643333
No 151
>PLN00181 protein SPA1-RELATED; Provisional
Probab=78.07 E-value=1e+02 Score=33.06 Aligned_cols=234 Identities=10% Similarity=0.081 Sum_probs=119.0
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCC-----c-EE-EEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-C
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEV-----K-VA-KVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-L 86 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG-----~-~~-~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~ 86 (377)
.+.+++.++.+..| .+-...+.|...++.. . .. .+..........++++ ..+....+-..++.|...+ .
T Consensus 485 ~V~~i~fs~dg~~l-atgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 485 LVCAIGFDRDGEFF-ATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred cEEEEEECCCCCEE-EEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 46677788765444 4445567777776543 1 10 0110112233455665 2334444545567777777 4
Q ss_pred CCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEE
Q psy5792 87 DGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI 165 (377)
Q Consensus 87 ~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~ 165 (377)
+++....+..... +.++.+...+ +.++++....+.|+..
T Consensus 564 ~~~~~~~~~~H~~~V~~l~~~p~~----------------------------------------~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 564 RSQLVTEMKEHEKRVWSIDYSSAD----------------------------------------PTLLASGSDDGSVKLW 603 (793)
T ss_pred CCeEEEEecCCCCCEEEEEEcCCC----------------------------------------CCEEEEEcCCCEEEEE
Confidence 4544444432222 4444431111 1245555555568887
Q ss_pred EcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCc-EEEEeccccCCCCCCCCcceEEEec
Q psy5792 166 KYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGR-ENIIEYVETGDPTPVDQFTDIAVDW 244 (377)
Q Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~-~~i~~~~~~~~~~~~~~p~~iavD~ 244 (377)
++..... +..+.....+..+++....+.++.+-..++.|...++..... ..... ........+++.
T Consensus 604 d~~~~~~-----~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-------~h~~~V~~v~f~- 670 (793)
T PLN00181 604 SINQGVS-----IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-------GHSKTVSYVRFV- 670 (793)
T ss_pred ECCCCcE-----EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-------CCCCCEEEEEEe-
Confidence 7764422 111222345667777555566666666778888888753221 11111 122335555553
Q ss_pred cCCeEEEEcCCCCEEEEEEcCCC-------eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 245 IAQNIYWSDPKENVIEVARLTGQ-------YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 245 ~~~~lYwtd~~~~~I~~~~~~g~-------~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.+..+++-...+.|...++... ....+ .........++++|..++|.-... ...|...+.
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~--D~~v~iw~~ 737 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSE--TNEVFVYHK 737 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeC--CCEEEEEEC
Confidence 4556666666777888777521 11222 222344567888886555444432 345554443
No 152
>KOG0292|consensus
Probab=77.90 E-value=1.1e+02 Score=33.08 Aligned_cols=109 Identities=15% Similarity=0.079 Sum_probs=68.3
Q ss_pred EEEEEECCCCEEEEEEcCCC--cEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 188 AKVDFHAAEDYIYWVDIDHG--TISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 188 ~~l~~d~~~~~ly~sd~~~~--~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
--.+|++ +--|+++-.... +++|++-.. .+..+.. ...+...++-+++ +++|..+++..+.|.+-+|
T Consensus 210 NwaAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcr--------gH~nnVssvlfhp-~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 210 NWAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCR--------GHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred ceEEecC-CcceEEecCCcceeeEEEeccccceeehhhh--------cccCCcceEEecC-ccceeEecCCCccEEEEec
Confidence 3455665 556777754444 555555432 1222222 3566788999996 6888899999999999999
Q ss_pred CCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 265 ~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
+....-......-.+-+-||.+| +..||=+-. .+.+....++
T Consensus 280 ~kRt~v~tfrrendRFW~laahP-~lNLfAAgH--DsGm~VFkle 321 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHP-ELNLFAAGH--DSGMIVFKLE 321 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecC-Ccceeeeec--CCceEEEEEc
Confidence 87654333333345678888887 677777743 2344444443
No 153
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=76.66 E-value=34 Score=34.74 Aligned_cols=114 Identities=12% Similarity=0.082 Sum_probs=65.5
Q ss_pred CCCceEEEEEECCCCEEEEEEcCC----------------CcEEEEEcCCC-------CcEEEEeccccCCCC-------
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDH----------------GTISRTHRDGT-------GRENIIEYVETGDPT------- 232 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~----------------~~I~~~~~~G~-------~~~~i~~~~~~~~~~------- 232 (377)
.+.+|..+++.+..+.+|++..++ |.|+|....+. ..+.++.........
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 456899999999999999986543 36888777543 233343322221111
Q ss_pred ---CCCCcceEEEeccCCeEEEE-cCCC----CEE-EEE---EcCCC--eEEEEeeC-CCCCceeEEEcCCCCeEEEEec
Q psy5792 233 ---PVDQFTDIAVDWIAQNIYWS-DPKE----NVI-EVA---RLTGQ--YRYVLISG-GVDQPSALAVDPESGYLFWSES 297 (377)
Q Consensus 233 ---~~~~p~~iavD~~~~~lYwt-d~~~----~~I-~~~---~~~g~--~~~~l~~~-~~~~P~~iavdp~~g~lywtd~ 297 (377)
.+..|.+|++|+ .|+|++. |... +++ -+. ..++. ..+..+.. ....-.|++..|....||+.-.
T Consensus 495 ~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 495 NANWFNSPDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred ccccccCCCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEec
Confidence 255699999997 5666654 4432 211 111 12221 11112221 2234578888888888888753
No 154
>PTZ00420 coronin; Provisional
Probab=75.68 E-value=1e+02 Score=31.77 Aligned_cols=50 Identities=10% Similarity=-0.081 Sum_probs=33.3
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCCCC
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPESG 290 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~~g 290 (377)
..|..++.+|.+-.+.+.|....+.......+-......| +++++-|..+
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 5677788899998888999999886554433332222233 6788877433
No 155
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=75.15 E-value=1.2 Score=28.20 Aligned_cols=27 Identities=4% Similarity=-0.091 Sum_probs=21.8
Q ss_pred CC-cCCCCCCce--eccccCCCccc---cCCcC
Q psy5792 117 IK-YNKNESKVQ--QVLGPLSKVSL---AAKVD 143 (377)
Q Consensus 117 ~~-C~~~~g~Cs--~~C~~~~~~~~---~~G~~ 143 (377)
+| |......|. +.|+++.|+|. +.||.
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 56 888778887 69999999998 66754
No 156
>KOG2110|consensus
Probab=74.09 E-value=85 Score=30.07 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=58.2
Q ss_pred cccCCCCeEEEEeC---CCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc--CCCCceEE
Q psy5792 22 LKPQSGPFVYGVKT---LSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN--LDGSNSTV 93 (377)
Q Consensus 22 ~~d~~~~~ly~~d~---~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~--~~g~~~~~ 93 (377)
|..+....=|.+.. ..|.|..+|+..- ..+|- .+-...-.||+ .+|.+.-|-...+.|.|+- .+|+....
T Consensus 134 AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 134 ALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 34444433344543 4789999998877 55553 44445667888 7888888888888877765 88998888
Q ss_pred EecCCCceeE--EeeecCCC
Q psy5792 94 LRNNAGISDF--ILFSVNSG 111 (377)
Q Consensus 94 ~~~~~~p~~i--~v~~~~~~ 111 (377)
++.+..|..| ..++++.|
T Consensus 212 FRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred eeCCceeeEEEEEEECCCCC
Confidence 8876654443 23466555
No 157
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=74.02 E-value=15 Score=36.06 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=41.4
Q ss_pred CceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEec----C---------------CCCceEEEEeCCCCEEEEE
Q psy5792 279 QPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQE----I---------------IMPIKDITLDRKNKRVYWC 339 (377)
Q Consensus 279 ~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~----~---------------~~~P~glalD~~~~~LYw~ 339 (377)
-|..|.|....++||++.|. .+.|...++.....-.++.. + -..|+=+.+...++||||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~-~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEccc-CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 35788888889999999997 68899998876543333321 0 1247778888889999999
Q ss_pred EeC--------------CCCeEEEEEccCC
Q psy5792 340 YSV--------------GSNVLESMDYSGG 355 (377)
Q Consensus 340 d~~--------------~~~~i~~~~~~G~ 355 (377)
.+. ....+..++.+..
T Consensus 392 nSLys~WD~qfYP~~~~~g~~m~~iDvd~~ 421 (461)
T PF05694_consen 392 NSLYSAWDKQFYPDGVKNGSWMLKIDVDTE 421 (461)
T ss_dssp ----HHHHHHHSTT------EEEEEEE-TT
T ss_pred eecccccccccCCCccccccEEEEEEecCC
Confidence 651 2356677777643
No 158
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=73.97 E-value=61 Score=28.36 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCcEEEEEc-CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 37 SHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 37 ~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.+.|..+|+ +|+ +-..-.......+...++ .+++||+++ ..+.|..++ .+|+..-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~ 61 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWR 61 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEE
Confidence 356777777 555 333321122444554456 999999995 567899999 68876433
No 159
>KOG0288|consensus
Probab=73.88 E-value=91 Score=30.34 Aligned_cols=211 Identities=9% Similarity=0.010 Sum_probs=111.7
Q ss_pred CCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCC-ceeEEee---------ecCCC-Cccc-CCC-cC
Q psy5792 56 PDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAG-ISDFILF---------SVNSG-YDIM-GIK-YN 120 (377)
Q Consensus 56 ~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~---------~~~~~-~~~~-~~~-C~ 120 (377)
+.+.....+++ ..++-..+..+++..+.-+ .+++....+..... ...++++ +.+++ .+|. ..- |.
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 34445667777 5666666666666555555 33333333332222 3333221 12233 2444 223 65
Q ss_pred CC---CCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCC
Q psy5792 121 KN---ESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED 197 (377)
Q Consensus 121 ~~---~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~ 197 (377)
.- ...|--+|.. ...+++.-..+.||..+..+... ...++..+...+++..+.+.
T Consensus 297 kt~l~~S~cnDI~~~-----------------~~~~~SgH~DkkvRfwD~Rs~~~-----~~sv~~gg~vtSl~ls~~g~ 354 (459)
T KOG0288|consen 297 KTVLPGSQCNDIVCS-----------------ISDVISGHFDKKVRFWDIRSADK-----TRSVPLGGRVTSLDLSMDGL 354 (459)
T ss_pred ccccccccccceEec-----------------ceeeeecccccceEEEeccCCce-----eeEeecCcceeeEeeccCCe
Confidence 41 2344444432 23445544445688888766644 22334455888888888666
Q ss_pred EEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC---CcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEee
Q psy5792 198 YIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD---QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLIS 274 (377)
Q Consensus 198 ~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~---~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~ 274 (377)
.|.-+ ...+.+..+++.+......+.+ .++. .-....+-| ++...-+-..+++|++-+..+......+.
T Consensus 355 ~lLss-sRDdtl~viDlRt~eI~~~~sA------~g~k~asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 355 ELLSS-SRDDTLKVIDLRTKEIRQTFSA------EGFKCASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred EEeee-cCCCceeeeecccccEEEEeec------cccccccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEec
Confidence 66655 5667888888887666655552 2221 122333433 22222234446788888888877766665
Q ss_pred CCCCC--ceeEEEcCCCCeEEEEe
Q psy5792 275 GGVDQ--PSALAVDPESGYLFWSE 296 (377)
Q Consensus 275 ~~~~~--P~~iavdp~~g~lywtd 296 (377)
..... ...++-+|.+..|-=+|
T Consensus 427 ~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 427 LSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred cCCCCcceEEEEEcCCCchhhccc
Confidence 43333 45666666555544444
No 160
>KOG0273|consensus
Probab=73.72 E-value=98 Score=30.64 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC-CCCeEEEEe
Q psy5792 234 VDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG-KIPLIARAG 307 (377)
Q Consensus 234 ~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ 307 (377)
+....++-|||.+..=|.+-...+.|.++.++++....-+.+......+|--||. |.|.-+-.. ..-+|+...
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecC
Confidence 4455589999999999999999999999999987644333335666789999984 555444321 245666543
No 161
>KOG4328|consensus
Probab=72.40 E-value=84 Score=30.97 Aligned_cols=151 Identities=13% Similarity=0.114 Sum_probs=73.3
Q ss_pred CCceEEEEEECCCC-EEEEEEcCCCcEEEEEcCCC--CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEE
Q psy5792 184 VSLAAKVDFHAAED-YIYWVDIDHGTISRTHRDGT--GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIE 260 (377)
Q Consensus 184 ~~~~~~l~~d~~~~-~ly~sd~~~~~I~~~~~~G~--~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~ 260 (377)
..+++.++|++..+ .+..+-...|.|--.++++. ....+.-. + ..-+.+.+|.+-+.+-.-+++-+-.++|.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f----~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF----T-PHSGPVSGLKFSPANTSQIYSSSYDGTIR 260 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe----c-cCCccccceEecCCChhheeeeccCceee
Confidence 35789999999887 56555546788888888632 11111110 0 11122445555544433333434445555
Q ss_pred EEEcCCCeEEEEeeC--CCCCceeEEEcCCCCeEEEEe-cCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEE
Q psy5792 261 VARLTGQYRYVLISG--GVDQPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVY 337 (377)
Q Consensus 261 ~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~lywtd-~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LY 337 (377)
..++.+..-++++.. .-..-.++-+...++.+++.+ +| +-.+.-.+++|+.-..+...+ ....++++.+....+.
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~-kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHK-KKITSVALNPVCPWFL 338 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhh-cccceeecCCCCchhe
Confidence 555555433333332 112233444555556666654 44 344444455665322221111 2455666655554444
Q ss_pred EEEe
Q psy5792 338 WCYS 341 (377)
Q Consensus 338 w~d~ 341 (377)
.+-.
T Consensus 339 aT~s 342 (498)
T KOG4328|consen 339 ATAS 342 (498)
T ss_pred eecc
Confidence 4433
No 162
>KOG2048|consensus
Probab=72.00 E-value=1.3e+02 Score=31.20 Aligned_cols=162 Identities=13% Similarity=0.090 Sum_probs=100.0
Q ss_pred CCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcce--EEEeccCCeEEEEcCCCCEE
Q psy5792 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD--IAVDWIAQNIYWSDPKENVI 259 (377)
Q Consensus 182 ~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~--iavD~~~~~lYwtd~~~~~I 259 (377)
.+..++..-+..+.++.|-++....-+|++++.++......+.. .+..+..... ..+| +..++.+......+
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~----~~~~~~~a~~i~ftid--~~k~~~~s~~~~~l 453 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDD----VPLALLDASAISFTID--KNKLFLVSKNIFSL 453 (691)
T ss_pred CCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEecc----chhhhccceeeEEEec--CceEEEEeccccee
Confidence 34555666777777889988888888999999987322222220 0001111222 3455 55565555455567
Q ss_pred EEEEcCCCeEEEEee---C-CCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCC-CceEEEEe-CCC
Q psy5792 260 EVARLTGQYRYVLIS---G-GVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIM-PIKDITLD-RKN 333 (377)
Q Consensus 260 ~~~~~~g~~~~~l~~---~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~-~P~glalD-~~~ 333 (377)
+...+++...+.+.. . .-.....|++.|.+.+|-..+. .+.|+..++.+.....+... +. ..+..++. ...
T Consensus 454 e~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t--~g~I~v~nl~~~~~~~l~~r-ln~~vTa~~~~~~~~ 530 (691)
T KOG2048|consen 454 EEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST--RGQIFVYNLETLESHLLKVR-LNIDVTAAAFSPFVR 530 (691)
T ss_pred EEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec--cceEEEEEcccceeecchhc-cCcceeeeecccccc
Confidence 778887765444433 1 2334578899998889888873 58999999998776666543 22 22333333 234
Q ss_pred CEEEEEEeCCCCeEEEEEccC
Q psy5792 334 KRVYWCYSVGSNVLESMDYSG 354 (377)
Q Consensus 334 ~~LYw~d~~~~~~i~~~~~~G 354 (377)
++|.++.+ .+.++..+++-
T Consensus 531 ~~lvvats--~nQv~efdi~~ 549 (691)
T KOG2048|consen 531 NRLVVATS--NNQVFEFDIEA 549 (691)
T ss_pred CcEEEEec--CCeEEEEecch
Confidence 67777776 57777887753
No 163
>KOG0646|consensus
Probab=71.82 E-value=1.1e+02 Score=30.25 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=115.4
Q ss_pred eeEeeccccCCC-------CcCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE-ECCeEE
Q psy5792 3 YLHVLPYTRNPS-------FGAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF-YKGRII 72 (377)
Q Consensus 3 ~~~~~~~~~~~~-------~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav-~~~~ly 72 (377)
+||+.+|+|--- -+....++.++.+-+| ++-+-++.|+-=.+... ..++. .+-....=|.+ .++..+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l-~ag~i~g~lYlWelssG~LL~v~~--aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL-LAGTISGNLYLWELSSGILLNVLS--AHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEE-EeecccCcEEEEEeccccHHHHHH--hhccceeEEEEeCCCcEE
Confidence 466666665322 2345566666554333 23335677776666544 44332 23333334445 778899
Q ss_pred EEcCCCCceEEEc-C---C--CC-c---eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCC
Q psy5792 73 YSDANDGNIRSIN-L---D--GS-N---STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAK 141 (377)
Q Consensus 73 ~td~~~~~I~~~~-~---~--g~-~---~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G 141 (377)
+|-..++.|.... . + -. . ..++.+..- +.++.+- +|+
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig----------------~Gg---------------- 186 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIG----------------SGG---------------- 186 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEec----------------CCC----------------
Confidence 9988888876654 1 1 10 0 111111111 2222220 111
Q ss_pred cCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC---
Q psy5792 142 VDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG--- 218 (377)
Q Consensus 142 ~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~--- 218 (377)
.+..|+-+..+. .++-.++... ..++.+.....+.++++|+.+..+|+.. ..|.|+...+.+..
T Consensus 187 ------~~~rl~TaS~D~-t~k~wdlS~g-----~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~ 253 (476)
T KOG0646|consen 187 ------TNARLYTASEDR-TIKLWDLSLG-----VLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQS 253 (476)
T ss_pred ------ccceEEEecCCc-eEEEEEeccc-----eeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCccc
Confidence 112344333322 3666666554 2344455556789999999999998876 45788877765432
Q ss_pred --------------cEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 219 --------------RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 219 --------------~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
...+.. -.+-..+..||+. ..+.|..+-...+++.+-+...++
T Consensus 254 ~~v~~k~~~~~~t~~~~~~G------h~~~~~ITcLais-~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 254 AGVNQKGRHEENTQINVLVG------HENESAITCLAIS-TDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred ccccccccccccceeeeecc------ccCCcceeEEEEe-cCccEEEeeCCCCCEEEEecchHH
Confidence 111111 0111358889998 568888887778888888877665
No 164
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=71.31 E-value=1e+02 Score=29.90 Aligned_cols=112 Identities=18% Similarity=0.149 Sum_probs=64.8
Q ss_pred CCEEEE-EEc--CCCcEEEEEcCCCC---cE-EEEeccccCCCCCC-CCcceEEEeccCCeEEEEcCC--CCEEEEEEcC
Q psy5792 196 EDYIYW-VDI--DHGTISRTHRDGTG---RE-NIIEYVETGDPTPV-DQFTDIAVDWIAQNIYWSDPK--ENVIEVARLT 265 (377)
Q Consensus 196 ~~~ly~-sd~--~~~~I~~~~~~G~~---~~-~i~~~~~~~~~~~~-~~p~~iavD~~~~~lYwtd~~--~~~I~~~~~~ 265 (377)
++.+|+ ++. ..++|.+++++... .+ .++. ..- ....++.+. ++.|++.... ..+|.+.+++
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-------~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-------EDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---------SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcC-------CCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECC
Confidence 777776 553 34699999998654 23 4443 111 136666665 7788777544 4589999999
Q ss_pred -CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecC--CCCeEEEEecCCCCeEEE
Q psy5792 266 -GQYRYVLISGGVDQPSALAVDPESGYLFWSESG--KIPLIARAGLDGKKQTIL 316 (377)
Q Consensus 266 -g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g--~~~~I~r~~ldG~~~~~l 316 (377)
+.....+-........++.-++....++++-.+ ..+.|++.++.-...+.+
T Consensus 358 ~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 358 DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp -TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 655444432222223455556666777776533 356888888876655544
No 165
>KOG0281|consensus
Probab=70.57 E-value=88 Score=29.82 Aligned_cols=145 Identities=13% Similarity=0.044 Sum_probs=80.1
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
.-.++|| + ++.++-.+...|...+++...- +. .--++-+|||--.-.++|.++-+..++|...+...
T Consensus 323 VNvVdfd--~-kyIVsASgDRTikvW~~st~ef---vR-------tl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 323 VNVVDFD--D-KYIVSASGDRTIKVWSTSTCEF---VR-------TLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred eeeeccc--c-ceEEEecCCceEEEEeccceee---eh-------hhhcccccceehhccCeEEEecCCCceEEEEeccc
Confidence 3455555 3 3445555666788787763221 11 12346788888777899999999999999999876
Q ss_pred CeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-CeE---------EEEecCCCCceEEEEeCCCCEE
Q psy5792 267 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQT---------ILAQEIIMPIKDITLDRKNKRV 336 (377)
Q Consensus 267 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~~---------~l~~~~~~~P~glalD~~~~~L 336 (377)
..+--++++.-.-.+.|-+|. .+|.=.- -.++|..-++... .++ .+++. .+...+|.+|. +=
T Consensus 390 G~cLRvLeGHEeLvRciRFd~--krIVSGa--YDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD~---fq 461 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDN--KRIVSGA--YDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFDE---FQ 461 (499)
T ss_pred cHHHHHHhchHHhhhheeecC--ceeeecc--ccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeecc---eE
Confidence 544333444344457777763 2332221 1345555544321 111 11111 23456666653 23
Q ss_pred EEEEeCCCCeEEEEEcc
Q psy5792 337 YWCYSVGSNVLESMDYS 353 (377)
Q Consensus 337 Yw~d~~~~~~i~~~~~~ 353 (377)
.++.+ ...+|..-++.
T Consensus 462 Ivsss-HddtILiWdFl 477 (499)
T KOG0281|consen 462 IISSS-HDDTILIWDFL 477 (499)
T ss_pred EEecc-CCCeEEEEEcC
Confidence 34444 45666666654
No 166
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=70.27 E-value=73 Score=32.44 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=44.1
Q ss_pred CCCCcceEEEeccCCeEEEEcCCC----------------CEEEEEEcCCC-------eEEEEeeC--------------
Q psy5792 233 PVDQFTDIAVDWIAQNIYWSDPKE----------------NVIEVARLTGQ-------YRYVLISG-------------- 275 (377)
Q Consensus 233 ~~~~p~~iavD~~~~~lYwtd~~~----------------~~I~~~~~~g~-------~~~~l~~~-------------- 275 (377)
.+.+|++|++.+.++.+|++..++ ++|.+.-..+. .-..++..
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 466899999999999999986543 36777666542 11122221
Q ss_pred ---CCCCceeEEEcCCCCeEEEEecC
Q psy5792 276 ---GVDQPSALAVDPESGYLFWSESG 298 (377)
Q Consensus 276 ---~~~~P~~iavdp~~g~lywtd~g 298 (377)
.+..|-+|++|| .|+|++..-+
T Consensus 495 ~~~~f~~PDnl~fD~-~GrLWi~TDg 519 (616)
T COG3211 495 NANWFNSPDNLAFDP-WGRLWIQTDG 519 (616)
T ss_pred ccccccCCCceEECC-CCCEEEEecC
Confidence 145599999998 6777776644
No 167
>KOG0308|consensus
Probab=70.06 E-value=1.4e+02 Score=30.88 Aligned_cols=194 Identities=13% Similarity=0.112 Sum_probs=104.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeC----------CCCCceEEEEE-ECCeEEEEcCCCCceEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSM----------PDAAQVVAAVF-YKGRIIYSDANDGNIRS 83 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~----------~~~~~p~~lav-~~~~ly~td~~~~~I~~ 83 (377)
+|+..+|+-.++..++..-.-.++|..-|++.. -+.+.+. +.....++||. ..+.++++-...+-|+.
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 478888886677777666666788888888754 2222110 11223477777 55577777666666777
Q ss_pred Ec-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCe
Q psy5792 84 IN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD 161 (377)
Q Consensus 84 ~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~ 161 (377)
.+ ..++.+-.+..... +..+.+.+.+++ +++.+..|.
T Consensus 198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~-----------------------------------------~ls~sSDgt 236 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTR-----------------------------------------LLSASSDGT 236 (735)
T ss_pred eccccccceeeeeccccceEEEEEcCCCCe-----------------------------------------EeecCCCce
Confidence 77 66766555554444 556655454443 122222234
Q ss_pred EEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-CcEEEEeccccCCCCCCCCcceE
Q psy5792 162 IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT-GRENIIEYVETGDPTPVDQFTDI 240 (377)
Q Consensus 162 I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~-~~~~i~~~~~~~~~~~~~~p~~i 240 (377)
|+--++.-... ...+.+.. ...-+++.++.-.++|..+ ..+.|++.++..- ....+.. .-.....+
T Consensus 237 IrlWdLgqQrC---l~T~~vH~-e~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~~~tlick--------~daPv~~l 303 (735)
T KOG0308|consen 237 IRLWDLGQQRC---LATYIVHK-EGVWALQSSPSFTHVYSGG-RDGNIYRTDLRNPAKSTLICK--------EDAPVLKL 303 (735)
T ss_pred EEeeeccccce---eeeEEecc-CceEEEeeCCCcceEEecC-CCCcEEecccCCchhheEeec--------CCCchhhh
Confidence 55555543322 01111111 1256666677677888777 4578888888652 2233333 22233445
Q ss_pred EEeccCCeEEEEcCCCCEEEEEEc
Q psy5792 241 AVDWIAQNIYWSDPKENVIEVARL 264 (377)
Q Consensus 241 avD~~~~~lYwtd~~~~~I~~~~~ 264 (377)
..+...+-+ |.-.....|.+-..
T Consensus 304 ~~~~~~~~~-WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 304 HLHEHDNSV-WVTTTDSSIKRWKL 326 (735)
T ss_pred hhccccCCc-eeeeccccceecCC
Confidence 555322333 55554455555443
No 168
>KOG0306|consensus
Probab=69.71 E-value=1.5e+02 Score=31.20 Aligned_cols=138 Identities=11% Similarity=0.062 Sum_probs=74.7
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCc-eEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEecccc
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSL-AAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVET 228 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~-~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~~ 228 (377)
+|.++-.+. .+..+.++.-.. .+.+-+-.. ...|+..+ +..+.+|-.....|...-+| |.=.+.++.
T Consensus 522 ~LaVsLLdn-TVkVyflDtlKF-----flsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fA---- 590 (888)
T KOG0306|consen 522 LLAVSLLDN-TVKVYFLDTLKF-----FLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFA---- 590 (888)
T ss_pred EEEEEeccC-eEEEEEecceee-----eeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhc----
Confidence 555554322 255555554321 122222222 34677766 56677776665555544444 222223332
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~ 306 (377)
.-..+-.+.+-| ...+|||-...+.|..-+-+.-....-+.+.....+.+|+-|.+++++=+.. ...|...
T Consensus 591 ----HdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh--D~sIRlw 661 (888)
T KOG0306|consen 591 ----HDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH--DKSIRLW 661 (888)
T ss_pred ----ccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC--CceeEee
Confidence 122355666766 6778999888888876654443332233445777899999986556655532 2445443
No 169
>KOG0292|consensus
Probab=69.56 E-value=1.4e+02 Score=32.18 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=94.8
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC-CCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEV 261 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~-G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~ 261 (377)
..++..|++|++..-.|.. ..-+|.|.-.+.. |+-...+- +.-+..+|+++.+ .+-||++-....+|.+
T Consensus 8 kSsRvKglsFHP~rPwILt-slHsG~IQlWDYRM~tli~rFd--------eHdGpVRgv~FH~-~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILT-SLHSGVIQLWDYRMGTLIDRFD--------EHDGPVRGVDFHP-TQPLFVSGGDDYKIKV 77 (1202)
T ss_pred ccccccceecCCCCCEEEE-eecCceeeeehhhhhhHHhhhh--------ccCCccceeeecC-CCCeEEecCCccEEEE
Confidence 3456889999997666654 4456777766543 22222221 2334588999996 7889999988889999
Q ss_pred EEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 262 ARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 262 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
-+.+.+.+.--+.+.++..|.+.+++.--+|.=+. +...|..-++...+.-.+++.--+....-.+. .++.|.++-+
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS--DDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptEDlIVSaS 154 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS--DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTEDLIVSAS 154 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEcc--CCCeEEEEeccCCceEEEEecCceEEEeeccC-CccceEEEec
Confidence 99877665433334678888888887655555443 23455555554433333333222223333332 3355666655
Q ss_pred CCCCeEEEEEccCC
Q psy5792 342 VGSNVLESMDYSGG 355 (377)
Q Consensus 342 ~~~~~i~~~~~~G~ 355 (377)
-..+|..-++.|-
T Consensus 155 -LDQTVRVWDisGL 167 (1202)
T KOG0292|consen 155 -LDQTVRVWDISGL 167 (1202)
T ss_pred -ccceEEEEeecch
Confidence 5666666666653
No 170
>KOG0266|consensus
Probab=69.56 E-value=1.2e+02 Score=30.08 Aligned_cols=85 Identities=16% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEc-CC-c-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNI-EV-K-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG-~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.+.+++..+++. .-..-+...+|+..+. +. + .+++. .+....+++++ ..+.+.++-..++.|+..+ ..|+-.
T Consensus 205 ~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 205 GVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV 281 (456)
T ss_pred ceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE
Confidence 566777777655 3345556777887777 55 4 67675 66677799999 5557888888889999999 567777
Q ss_pred EEEecCCC-ceeEE
Q psy5792 92 TVLRNNAG-ISDFI 104 (377)
Q Consensus 92 ~~~~~~~~-p~~i~ 104 (377)
+++..... ..++.
T Consensus 282 ~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 282 RKLKGHSDGISGLA 295 (456)
T ss_pred EeeeccCCceEEEE
Confidence 76654333 33343
No 171
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=69.46 E-value=5.6 Score=24.67 Aligned_cols=20 Identities=40% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCcceEEEeccCCeEEEEcCC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPK 255 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~ 255 (377)
..+.+||+| ..+|+|++-..
T Consensus 13 ~~~~~IavD-~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAVD-SNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEEC-CCCCEEEEEee
Confidence 359999999 57999998543
No 172
>KOG0279|consensus
Probab=69.32 E-value=95 Score=28.67 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=101.4
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
+..++... ++..+++-...+.++..++.++.....+. ..-...-++|+++.++.| ++-...++|..-+.-|
T Consensus 66 v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~-------GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 66 VSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV-------GHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLG 136 (315)
T ss_pred ecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE-------ecCCceEEEEecCCCcee-ecCCCcceeeeeeecc
Confidence 44555554 56666676677888889998754333333 244568899999766555 7878888999999888
Q ss_pred CeEEEEeeCC-CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCC
Q psy5792 267 QYRYVLISGG-VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345 (377)
Q Consensus 267 ~~~~~l~~~~-~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~ 345 (377)
...-++.+.. -.....+.+.|.+...+....+....+..-++++-....-....-...+-+++. ..+.|.-+-. +.+
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGg-kdg 214 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGG-KDG 214 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCC-CCc
Confidence 8777777654 667788889887656666554433455555676644332222223556677775 3466666655 666
Q ss_pred eEEEEEccCC
Q psy5792 346 VLESMDYSGG 355 (377)
Q Consensus 346 ~i~~~~~~G~ 355 (377)
.+.-.+++-+
T Consensus 215 ~~~LwdL~~~ 224 (315)
T KOG0279|consen 215 EAMLWDLNEG 224 (315)
T ss_pred eEEEEEccCC
Confidence 6666666633
No 173
>KOG0294|consensus
Probab=67.55 E-value=1.1e+02 Score=28.76 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=112.5
Q ss_pred cCCccccccCCCCeEEEEeC-CCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEECCe---EEEEcCCCCceEEEc-CCC
Q psy5792 16 GAVASTLKPQSGPFVYGVKT-LSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFYKGR---IIYSDANDGNIRSIN-LDG 88 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~-~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~~~~---ly~td~~~~~I~~~~-~~g 88 (377)
...+.+|++ ..|.+.. ...+|...|+.-+ ...++ .......+|-++... =..+-..++.|...+ .+=
T Consensus 44 ~sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll--~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 44 GSITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILL--SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred cceeEEEec----ceeEeccCCCCcEEEEeccchhhhccee--ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe
Confidence 466778885 4455655 4678999998877 55554 334445555554332 122222334433333 111
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
.-...+....+ +.+|.+ ||... |..+-+..+.++.-+|
T Consensus 118 ~~~~slK~H~~~Vt~lsi-HPS~K----------------------------------------LALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSI-HPSGK----------------------------------------LALSVGGDQVLRTWNL 156 (362)
T ss_pred EEeeeecccccccceeEe-cCCCc----------------------------------------eEEEEcCCceeeeehh
Confidence 11222222222 445544 44332 4444444334665555
Q ss_pred -CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccC
Q psy5792 168 -NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246 (377)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~ 246 (377)
.|.. ..+.++.. .+.-+.+++.+.+.++.-. ++|-...++.......+. .-.++..+..+ .
T Consensus 157 V~Gr~----a~v~~L~~--~at~v~w~~~Gd~F~v~~~--~~i~i~q~d~A~v~~~i~--------~~~r~l~~~~l--~ 218 (362)
T KOG0294|consen 157 VRGRV----AFVLNLKN--KATLVSWSPQGDHFVVSGR--NKIDIYQLDNASVFREIE--------NPKRILCATFL--D 218 (362)
T ss_pred hcCcc----ceeeccCC--cceeeEEcCCCCEEEEEec--cEEEEEecccHhHhhhhh--------ccccceeeeec--C
Confidence 2331 23333332 3455778887777777653 455555554322111111 11345555555 3
Q ss_pred CeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEE-EcCCCCeEEEEecCCCC--eEEEEecCCCCeE
Q psy5792 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALA-VDPESGYLFWSESGKIP--LIARAGLDGKKQT 314 (377)
Q Consensus 247 ~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~ia-vdp~~g~lywtd~g~~~--~I~r~~ldG~~~~ 314 (377)
+.-..+-..+..|...+-|....-..+...-.+..+|+ ++-..+++..|-. +.+ +|+.++++...+.
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS-SDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS-SDGFIKVWDIDMETKKRP 288 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec-cCceEEEEEccccccCCc
Confidence 44334545556788888775333233333455667777 3333455555543 234 4555555544433
No 174
>KOG0277|consensus
Probab=67.12 E-value=1e+02 Score=28.17 Aligned_cols=51 Identities=4% Similarity=-0.178 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD 215 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~ 215 (377)
.++-.++...+. ..+.++.. ..+...+...-+.++..|-..++.|+..++.
T Consensus 171 ~l~lwdvr~~gk---~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir 221 (311)
T KOG0277|consen 171 TLRLWDVRSPGK---FMSIEAHN-SEILCCDWSKYNHNVLATGGVDNLVRGWDIR 221 (311)
T ss_pred eEEEEEecCCCc---eeEEEecc-ceeEeecccccCCcEEEecCCCceEEEEehh
Confidence 344455544433 12233333 4566777766677888887777788877775
No 175
>KOG0281|consensus
Probab=66.82 E-value=50 Score=31.36 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=53.6
Q ss_pred cccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CCCCceEEEec
Q psy5792 22 LKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LDGSNSTVLRN 96 (377)
Q Consensus 22 ~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~ 96 (377)
++|++.+ +.++.++...|..-+.+.- ++++ ..|--|||. |.+++.++-..+..|+..+ ..|+-.+++..
T Consensus 325 vVdfd~k-yIVsASgDRTikvW~~st~efvRtl-----~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeG 398 (499)
T KOG0281|consen 325 VVDFDDK-YIVSASGDRTIKVWSTSTCEFVRTL-----NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 398 (499)
T ss_pred eeccccc-eEEEecCCceEEEEeccceeeehhh-----hcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhc
Confidence 4566544 4455556677777777666 5554 346677887 9999999999999999999 77777777654
Q ss_pred CCC-ceeEEe
Q psy5792 97 NAG-ISDFIL 105 (377)
Q Consensus 97 ~~~-p~~i~v 105 (377)
..+ ...|.+
T Consensus 399 HEeLvRciRF 408 (499)
T KOG0281|consen 399 HEELVRCIRF 408 (499)
T ss_pred hHHhhhheee
Confidence 333 444443
No 176
>KOG0275|consensus
Probab=66.76 E-value=1.2e+02 Score=28.68 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=27.2
Q ss_pred ceEEEeccCCeEEEEcCCCCEEEEEEc-CCCeEEEEeeCCCCCceeEEEcCCCC
Q psy5792 238 TDIAVDWIAQNIYWSDPKENVIEVARL-TGQYRYVLISGGVDQPSALAVDPESG 290 (377)
Q Consensus 238 ~~iavD~~~~~lYwtd~~~~~I~~~~~-~g~~~~~l~~~~~~~P~~iavdp~~g 290 (377)
...++.+.+..+|-.-. .+.++.++. .|+..+++.- .-..|-||+-+|...
T Consensus 441 i~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE~tl~V-hEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGE-DGVLYCFSVLSGKLERTLPV-HEKDVIGLTHHPHQN 492 (508)
T ss_pred EEEEecCCCcEEEEEcc-CcEEEEEEeecCceeeeeec-ccccccccccCcccc
Confidence 34455665666665433 344555443 3444444432 345678888888543
No 177
>KOG0282|consensus
Probab=66.61 E-value=1.4e+02 Score=29.61 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=105.9
Q ss_pred eEEEEE-ECCeEEEEcCCCCceEEEc-CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccc
Q psy5792 61 VVAAVF-YKGRIIYSDANDGNIRSIN-LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 61 p~~lav-~~~~ly~td~~~~~I~~~~-~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~ 138 (377)
...+.+ ..+.=|.+-..+..|.-.| .+|+....+..+.-|..++. +|+.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf-~pd~~--------------------------- 312 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKF-HPDNQ--------------------------- 312 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeec-CCCCC---------------------------
Confidence 344455 5556666666666677677 66766666654433544442 44332
Q ss_pred cCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCC-
Q psy5792 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGT- 217 (377)
Q Consensus 139 ~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~- 217 (377)
-++++-...++|+..++..... .+.. -..++.+..+.|-. ++.=|++....+.+......-.
T Consensus 313 ------------n~fl~G~sd~ki~~wDiRs~kv--vqeY--d~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v 375 (503)
T KOG0282|consen 313 ------------NIFLVGGSDKKIRQWDIRSGKV--VQEY--DRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPV 375 (503)
T ss_pred ------------cEEEEecCCCcEEEEeccchHH--HHHH--HhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCc
Confidence 2555555555699988876532 1100 11233344555544 5566666655565555444311
Q ss_pred CcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEE---EEeeC--CCCCceeEEEcCCCCeE
Q psy5792 218 GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY---VLISG--GVDQPSALAVDPESGYL 292 (377)
Q Consensus 218 ~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~---~l~~~--~~~~P~~iavdp~~g~l 292 (377)
..+.+.. ..+..-..|++.+ ++..+.+....+.|..++..-.++. ....+ .-..+..+...|..++|
T Consensus 376 ~ik~i~~-------~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l 447 (503)
T KOG0282|consen 376 PIKNIAD-------PEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTL 447 (503)
T ss_pred cchhhcc-------hhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence 1122222 3344455788886 5667777777788888776554322 12221 12245677777777777
Q ss_pred EEEecCCCCeEEEEecCC
Q psy5792 293 FWSESGKIPLIARAGLDG 310 (377)
Q Consensus 293 ywtd~g~~~~I~r~~ldG 310 (377)
.--|. .++++..+...
T Consensus 448 ~SGds--dG~v~~wdwkt 463 (503)
T KOG0282|consen 448 CSGDS--DGKVNFWDWKT 463 (503)
T ss_pred EeecC--CccEEEeechh
Confidence 76663 35665555443
No 178
>KOG0650|consensus
Probab=66.44 E-value=1.6e+02 Score=30.21 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=51.4
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC-CCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG-TGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA 262 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G-~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~ 262 (377)
-+.+..+.|++...++|++....-+|+ ++-. -..+.+. ++..+...|++++.++||+.... .+++..+
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq~~vRiY--dL~kqelvKkL~--------tg~kwiS~msihp~GDnli~gs~-d~k~~Wf 634 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQRSVRIY--DLSKQELVKKLL--------TGSKWISSMSIHPNGDNLILGSY-DKKMCWF 634 (733)
T ss_pred CCceeEEEecCCCceEEEEeccceEEE--ehhHHHHHHHHh--------cCCeeeeeeeecCCCCeEEEecC-CCeeEEE
Confidence 345889999999999999976544444 4431 1122222 46678999999999999976654 4688889
Q ss_pred EcCCC
Q psy5792 263 RLTGQ 267 (377)
Q Consensus 263 ~~~g~ 267 (377)
+++-+
T Consensus 635 Dldls 639 (733)
T KOG0650|consen 635 DLDLS 639 (733)
T ss_pred EcccC
Confidence 98865
No 179
>KOG0276|consensus
Probab=63.97 E-value=1.8e+02 Score=30.01 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=38.6
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEE--ECCeEEEEcCCCCceEEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVF--YKGRIIYSDANDGNIRSI 84 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav--~~~~ly~td~~~~~I~~~ 84 (377)
++.++++++|..+.+ .+.+..-.|..-+-++. ..+.. +++--....+++ .+..-|.+-.-++.|..-
T Consensus 98 DyIR~iavHPt~P~v-LtsSDDm~iKlW~we~~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYV-LTSSDDMTIKLWDWENEWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred cceeeeeecCCCCeE-EecCCccEEEEeeccCceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 489999999986654 23334455666688888 45554 233333566777 344455554444444433
No 180
>KOG1334|consensus
Probab=59.88 E-value=86 Score=31.19 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCC-----CCceeEEEcCCCCeEEEEecC-------CCC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGV-----DQPSALAVDPESGYLFWSESG-------KIP 301 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~-----~~P~~iavdp~~g~lywtd~g-------~~~ 301 (377)
+...-||+++.+-+-|.+....+-+.-+++.-...... ....- -.-..||+||.+-+.|-+.-. +..
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQR 312 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhccc
Confidence 45778999999999999988887777777765432222 11111 134789999987766655311 112
Q ss_pred eEEEEecCCC----CeEEEEecCCCCceEEEEeC---------CC--------------------------CEEEEEEeC
Q psy5792 302 LIARAGLDGK----KQTILAQEIIMPIKDITLDR---------KN--------------------------KRVYWCYSV 342 (377)
Q Consensus 302 ~I~r~~ldG~----~~~~l~~~~~~~P~glalD~---------~~--------------------------~~LYw~d~~ 342 (377)
+|......|. -+..|+........|++..+ .. .++|---.
T Consensus 313 ~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr- 391 (559)
T KOG1334|consen 313 RIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR- 391 (559)
T ss_pred chhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccc-
Confidence 2222222220 01122222222233333321 11 23343344
Q ss_pred CCCeEEEEEccCCceEEEEecCCCCCccccccc
Q psy5792 343 GSNVLESMDYSGGSKMQLKLSSNIKNALLDRKS 375 (377)
Q Consensus 343 ~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~~~~ 375 (377)
...+|.-+++-|....-+++++...|-|.|.|.
T Consensus 392 N~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 392 NSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred cccccceeeeccCccceEEecCccceEEEEecc
Confidence 556788899998766667788999999999874
No 181
>KOG2048|consensus
Probab=59.04 E-value=2.3e+02 Score=29.46 Aligned_cols=87 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEEEE-CCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAVFY-KGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
.+.++|...++..|-+.. ..+.|+.-++.-. ...++-.+..++..+|++. +++||=++. ++.|...| .+++.+.
T Consensus 27 ~I~slA~s~kS~~lAvsR-t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSR-TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-SGSITEWDLHTLKQKY 104 (691)
T ss_pred ceEEEEEeccCCceeeec-cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecC-CceEEEEecccCceeE
Confidence 467888888888874433 3688999988777 5555434667788999995 777776654 57899999 8888877
Q ss_pred EEecCCC-ceeEEe
Q psy5792 93 VLRNNAG-ISDFIL 105 (377)
Q Consensus 93 ~~~~~~~-p~~i~v 105 (377)
.+....+ .=.|++
T Consensus 105 ~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAI 118 (691)
T ss_pred EecCCCcceeEEEe
Confidence 7765554 445554
No 182
>KOG0277|consensus
Probab=58.13 E-value=1.5e+02 Score=27.12 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=66.0
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEecCC----CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEec
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK----VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEY 225 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~----~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~ 225 (377)
.++.+.++ |+++-+++..... |+.. -..+.+++.....++.+++....++|.-.+++-.+ .++..
T Consensus 75 ~~~~a~GD-GSLrl~d~~~~s~-------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-- 144 (311)
T KOG0277|consen 75 QVIAASGD-GSLRLFDLTMPSK-------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-- 144 (311)
T ss_pred eEEEEecC-ceEEEeccCCCCc-------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec--
Confidence 35555544 4677777543322 3222 23488999999999999998888888877765322 22322
Q ss_pred cccCCCCCCCCcceEEEeccCCeEEEEcCCCCE--EEEEEcCCCeEE
Q psy5792 226 VETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV--IEVARLTGQYRY 270 (377)
Q Consensus 226 ~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~--I~~~~~~g~~~~ 270 (377)
..-..++..+..+...+||-+-++.+. |.=.+..|+...
T Consensus 145 ------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 145 ------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred ------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE
Confidence 233347788888889999888777664 444455555543
No 183
>KOG2111|consensus
Probab=57.44 E-value=1.7e+02 Score=27.54 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred eEeeccccCCCC-------cCCcccc-ccCCCCeEEEEeCC--CCcEEEEEcCCc-E---EEEEeCCCCCceEEEEE-EC
Q psy5792 4 LHVLPYTRNPSF-------GAVASTL-KPQSGPFVYGVKTL--SHSLHYVNIEVK-V---AKVVSMPDAAQVVAAVF-YK 68 (377)
Q Consensus 4 ~~~~~~~~~~~~-------~~~~~~~-~d~~~~~ly~~d~~--~~~I~~~~~dG~-~---~~i~~~~~~~~p~~lav-~~ 68 (377)
|||+.|+-||-. .-|.|++ +++....-+.+..+ .|+|+..++.-. . ..|- .+.....=+++ ..
T Consensus 115 I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~--AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 115 IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN--AHDSDIACVALNLQ 192 (346)
T ss_pred EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE--cccCceeEEEEcCC
Q ss_pred CeEEEEcCCCCceEEEc--CCCCceEEEecCCC---ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcC
Q psy5792 69 GRIIYSDANDGNIRSIN--LDGSNSTVLRNNAG---ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVD 143 (377)
Q Consensus 69 ~~ly~td~~~~~I~~~~--~~g~~~~~~~~~~~---p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~ 143 (377)
+.+.-|-...+.+.|+= .+|+.+.-++.+.. ...|++ +++.+
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF-Sp~~s-------------------------------- 239 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF-SPNSS-------------------------------- 239 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe-CCCcc--------------------------------
Q ss_pred CCcCCCcEEEEEeCCCCeEEEEEcCCCCceeeEE----------EEe--cCCCCceEEEEEECCCCEEEEEEcCCCcEEE
Q psy5792 144 FHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV----------LGP--LSKVSLAAKVDFHAAEDYIYWVDIDHGTISR 211 (377)
Q Consensus 144 ~C~~~~~~l~~s~~~~~~I~~~~l~~~~~~~~~~----------~~~--~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~ 211 (377)
++.+..+.|.++.+.+..... +.. ++| +...-...-+.+......+.=--...++|..
T Consensus 240 --------~LavsSdKgTlHiF~l~~~~~--~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~ 309 (346)
T KOG2111|consen 240 --------WLAVSSDKGTLHIFSLRDTEN--TEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIA 309 (346)
T ss_pred --------EEEEEcCCCeEEEEEeecCCC--CccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEE
Q ss_pred EEcCCCCcEEEEe
Q psy5792 212 THRDGTGRENIIE 224 (377)
Q Consensus 212 ~~~~G~~~~~i~~ 224 (377)
+-.||+..+-.+.
T Consensus 310 i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 310 ICADGSYYKFKFD 322 (346)
T ss_pred EEeCCcEEEEEec
No 184
>KOG0772|consensus
Probab=57.01 E-value=2.2e+02 Score=28.71 Aligned_cols=226 Identities=11% Similarity=0.121 Sum_probs=109.6
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--E-EEEEe-CCCCCc-eEEEEE--ECCeEEEEcCCCCceEEEcCCCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--V-AKVVS-MPDAAQ-VVAAVF--YKGRIIYSDANDGNIRSINLDGS 89 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~-~~i~~-~~~~~~-p~~lav--~~~~ly~td~~~~~I~~~~~~g~ 89 (377)
.+..+++|+.+-|+| +-+....|...|++|- . +.+-+ .+.-.| ...+.+ .+++|.+.... -....+|.+|.
T Consensus 169 ~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~-aqakl~DRdG~ 246 (641)
T KOG0772|consen 169 IVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS-AQAKLLDRDGF 246 (641)
T ss_pred EEEEeeecCCCceee-eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-cceeEEccCCc
Confidence 678899999887773 4455667888888886 1 11110 011122 244544 77777776543 34455666665
Q ss_pred ceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcC
Q psy5792 90 NSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYN 168 (377)
Q Consensus 90 ~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~ 168 (377)
..--+..+-. +..+ ...--|+|..+-+...|. ..+.|| +....|.+|--+++
T Consensus 247 ~~~e~~KGDQYI~Dm-------------------~nTKGHia~lt~g~whP~------~k~~Fl--T~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDM-------------------YNTKGHIAELTCGCWHPD------NKEEFL--TCSYDGTLRIWDVN 299 (641)
T ss_pred eeeeeeccchhhhhh-------------------hccCCceeeeeccccccC------cccceE--EecCCCcEEEEecC
Confidence 4322211111 1111 111223332211111100 012333 33333346666665
Q ss_pred CCCceeeEEEEecC-CCCc--eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC--CcceEEEe
Q psy5792 169 KNESKVTQVLGPLS-KVSL--AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD--QFTDIAVD 243 (377)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~--~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~--~p~~iavD 243 (377)
....+ .+++.+-. +..+ +..-+++. .+.++-+-..+|+|.-.+..+......... .. .... .+..|++-
T Consensus 300 ~~k~q-~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~v-k~---AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 300 NTKSQ-LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKV-KD---AHLPGQDITSISFS 373 (641)
T ss_pred Cchhh-eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEe-ee---ccCCCCceeEEEec
Confidence 43321 34444322 2222 56666776 556666666678888887743322221110 00 1222 57888888
Q ss_pred ccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCC
Q psy5792 244 WIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVD 278 (377)
Q Consensus 244 ~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~ 278 (377)
.. ++...+-...+.+.+-+|+-.........++.
T Consensus 374 ~d-g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~ 407 (641)
T KOG0772|consen 374 YD-GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP 407 (641)
T ss_pred cc-cchhhhccCCCceeeeeccccccchhhhcCCC
Confidence 64 44445666666777777765544344444443
No 185
>PTZ00486 apyrase Superfamily; Provisional
Probab=56.65 E-value=76 Score=30.27 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCeEEEEeCCCCcEEEEEcCCc---EEEEEeCCCCCceEE-----EEEECCeEEEEcCC
Q psy5792 26 SGPFVYGVKTLSHSLHYVNIEVK---VAKVVSMPDAAQVVA-----AVFYKGRIIYSDAN 77 (377)
Q Consensus 26 ~~~~ly~~d~~~~~I~~~~~dG~---~~~i~~~~~~~~p~~-----lav~~~~ly~td~~ 77 (377)
-+++||-.|.++|-|+.++.++. ...|++.+......| ++|.++.||+....
T Consensus 123 FngkLys~DDrTGiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~G 182 (352)
T PTZ00486 123 FNGKLYGFDDRTGIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIG 182 (352)
T ss_pred eCCEEEEEeCCceEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEeccc
Confidence 46799999999999999987664 666664333333333 46799999997653
No 186
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=56.36 E-value=1.3e+02 Score=28.58 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=45.4
Q ss_pred CCEEEEEEcCCC-----cEEEEEcCCCCcEEEEeccccCCCC---CCCCcceEEEecc-CCeEEEEcCCCCEEEEEEcCC
Q psy5792 196 EDYIYWVDIDHG-----TISRTHRDGTGRENIIEYVETGDPT---PVDQFTDIAVDWI-AQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 196 ~~~ly~sd~~~~-----~I~~~~~~G~~~~~i~~~~~~~~~~---~~~~p~~iavD~~-~~~lYwtd~~~~~I~~~~~~g 266 (377)
++++|++....+ +|+-...-.+..+++...-.+.++. .-+.--.+.+|.. +|.+|+.|.....|.|+...+
T Consensus 193 nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn 272 (442)
T PF15416_consen 193 NGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSN 272 (442)
T ss_pred CCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccC
Confidence 789999987655 6777666666777776511111111 0112335777743 345888888878888888776
Q ss_pred Ce
Q psy5792 267 QY 268 (377)
Q Consensus 267 ~~ 268 (377)
..
T Consensus 273 ~k 274 (442)
T PF15416_consen 273 YK 274 (442)
T ss_pred cc
Confidence 54
No 187
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=55.16 E-value=52 Score=20.87 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=22.9
Q ss_pred ceEEEEEECCeEEEEcCCCCceEEEc-CCCCceE
Q psy5792 60 QVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNST 92 (377)
Q Consensus 60 ~p~~lav~~~~ly~td~~~~~I~~~~-~~g~~~~ 92 (377)
...++++.++++|++++. +.+..+| .+=.++.
T Consensus 3 ~a~~v~v~g~yaYva~~~-~Gl~IvDISnPs~P~ 35 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGN-NGLVIVDISNPSNPV 35 (42)
T ss_pred eEEEEEEECCEEEEEeCC-CCEEEEECCCCCCCE
Confidence 456788999999999875 4577777 4444443
No 188
>PRK13616 lipoprotein LpqB; Provisional
Probab=55.09 E-value=2.6e+02 Score=28.98 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=57.9
Q ss_pred CcceEEEeccCCeEEEEcCCCCEEEE---EEcCCCeEEE----EeeCCCCC-ceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 236 QFTDIAVDWIAQNIYWSDPKENVIEV---ARLTGQYRYV----LISGGVDQ-PSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 236 ~p~~iavD~~~~~lYwtd~~~~~I~~---~~~~g~~~~~----l~~~~~~~-P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
.+..+++-+.+.+|.+.-. ++|++ ...++...+. -+...+.. +..++=-. .+.|++...+....++++.
T Consensus 449 ~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEEEEecCCCCceEEEe
Confidence 4777888766777777653 46776 4443333222 01112332 34443322 4456665444456799999
Q ss_pred cCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEe
Q psy5792 308 LDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 308 ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~ 341 (377)
+||...+.+...++..| ..+|-.....||.+|.
T Consensus 526 vDG~~~~~~~~~n~~~~-v~~vaa~~~~iyv~~~ 558 (591)
T PRK13616 526 LDGSNSDALPSRNLSAP-VVAVAASPSTVYVTDA 558 (591)
T ss_pred cCCccccccCCCCccCc-eEEEecCCceEEEEcC
Confidence 99998775444333333 2444334578999988
No 189
>KOG3621|consensus
Probab=52.94 E-value=2.9e+02 Score=28.90 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=26.3
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG 216 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G 216 (377)
-.+++++..+....++|..|. .|+|.-..++.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCC-CceEEEEEech
Confidence 456899999999999999984 67888888875
No 190
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=52.37 E-value=9 Score=34.09 Aligned_cols=23 Identities=17% Similarity=-0.120 Sum_probs=19.3
Q ss_pred CCC-cCCCCCCceeccccCCCccc
Q psy5792 116 GIK-YNKNESKVQQVLGPLSKVSL 138 (377)
Q Consensus 116 ~~~-C~~~~g~Cs~~C~~~~~~~~ 138 (377)
+.+ |...+..|.|.|.+.+++|.
T Consensus 186 ~~~~C~~~~~~c~~~C~~~~g~~~ 209 (224)
T cd01475 186 VPDLCATLSHVCQQVCISTPGSYL 209 (224)
T ss_pred CchhhcCCCCCccceEEcCCCCEE
Confidence 455 77778899999999999986
No 191
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=52.02 E-value=1.6e+02 Score=25.47 Aligned_cols=135 Identities=9% Similarity=0.058 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC-CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEc
Q psy5792 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP-KENVIEVARLTGQYRYVLISGGVDQPSALAVD 286 (377)
Q Consensus 208 ~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavd 286 (377)
.|++++..+...+.+.. ..-+.+.+++-.|.+..+.+... ...+|...++++.....+- -.....|...
T Consensus 40 ~l~~~~~~~~~~~~i~l-------~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~ws 109 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIEL-------KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWS 109 (194)
T ss_pred EEEEEecCCCccceeec-------cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEEC
Confidence 56666555444333322 22223777888877777666543 2347888888765544442 2345689999
Q ss_pred CCCCeEEEEecCC-CCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCC-----CCeEEEEEccCC
Q psy5792 287 PESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVG-----SNVLESMDYSGG 355 (377)
Q Consensus 287 p~~g~lywtd~g~-~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~-----~~~i~~~~~~G~ 355 (377)
|.+.+|..+..+. .+.|+-.+.+ ..+.+..........++-++.++.|..+.. . .+.+...+++|.
T Consensus 110 P~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t-~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATATT-SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe-ccceeccccEEEEEecCe
Confidence 9888888877653 3567666665 444444433445677888887777766654 2 344555556654
No 192
>PTZ00420 coronin; Provisional
Probab=51.86 E-value=2.9e+02 Score=28.52 Aligned_cols=193 Identities=11% Similarity=0.022 Sum_probs=102.7
Q ss_pred EEEEeCCCCeEEEEEcCCCCce---eeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccc
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESK---VTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVE 227 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~---~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~ 227 (377)
++++.+..+.|+..++...... ....+..+. ....+..+++++....++.+-...+.|...++........+.
T Consensus 89 lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--- 165 (568)
T PTZ00420 89 ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--- 165 (568)
T ss_pred EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---
Confidence 5555555556877777532110 000111122 234578899998777777666567888888886433221121
Q ss_pred cCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc--eeEEE---cCCCCeEEEEecCC--C
Q psy5792 228 TGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP--SALAV---DPESGYLFWSESGK--I 300 (377)
Q Consensus 228 ~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P--~~iav---dp~~g~lywtd~g~--~ 300 (377)
.-..+.++++++. +.++.+-...++|...++.......-+....... +.+.+ .+..++|.-+-... .
T Consensus 166 -----~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 166 -----MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred -----cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 1234778888864 5566666666789999987654322222211111 12222 23445555443221 1
Q ss_pred CeEEEEecCCC-CeEEEEecCCCCceE--EEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 301 PLIARAGLDGK-KQTILAQEIIMPIKD--ITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 301 ~~I~r~~ldG~-~~~~l~~~~~~~P~g--lalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
..|...++... .......-+ ..+.. -..|..++.+|.+-. +.+.|...++..+
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~lsGk-GD~tIr~~e~~~~ 295 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIYLIGK-GDGNCRYYQHSLG 295 (568)
T ss_pred cEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEEEEEE-CCCeEEEEEccCC
Confidence 24555555532 211111111 12222 245677789999888 8888888888644
No 193
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.14 E-value=2.2e+02 Score=26.83 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred CceEEEEEEC-CCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCC--cceEEEeccCCeEEEEcCC----CC
Q psy5792 185 SLAAKVDFHA-AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQ--FTDIAVDWIAQNIYWSDPK----EN 257 (377)
Q Consensus 185 ~~~~~l~~d~-~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~--p~~iavD~~~~~lYwtd~~----~~ 257 (377)
.+..+++.++ ...-+.++.....-..+++..+......+. ..-++ =---++...++.||-|+.. .+
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-------a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G 77 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-------APPGRHFYGHGVFSPDGRLLYTTENDYETGRG 77 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-------CCCCCEEecCEEEcCCCCEEEEeccccCCCcE
Q ss_pred EEEEEEcC-CCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC---CeEEEEecCCCCceEEEEeCCC
Q psy5792 258 VIEVARLT-GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK---KQTILAQEIIMPIKDITLDRKN 333 (377)
Q Consensus 258 ~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~---~~~~l~~~~~~~P~glalD~~~ 333 (377)
.|.+.+.. +-.+.--..+..-.|+.|.+.|....|.+++-| +.-. +++.|--. ..+|+=.-||..+
T Consensus 78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG---------I~Thpd~GR~kLNl~-tM~psL~~ld~~s 147 (305)
T PF07433_consen 78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG---------IETHPDSGRAKLNLD-TMQPSLVYLDARS 147 (305)
T ss_pred EEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC---------CccCcccCceecChh-hcCCceEEEecCC
Q ss_pred CEE
Q psy5792 334 KRV 336 (377)
Q Consensus 334 ~~L 336 (377)
+.|
T Consensus 148 G~l 150 (305)
T PF07433_consen 148 GAL 150 (305)
T ss_pred Cce
No 194
>KOG2110|consensus
Probab=49.94 E-value=2.4e+02 Score=27.08 Aligned_cols=63 Identities=5% Similarity=0.002 Sum_probs=34.9
Q ss_pred EEEEEeCCCCeE-EEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCC
Q psy5792 151 FILFSVNSGYDI-MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDG 216 (377)
Q Consensus 151 ~l~~s~~~~~~I-~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G 216 (377)
-++.+..+.|.| |.+....+.. +.+..- -....++..++|++....|-.+. +++.|..++++-
T Consensus 186 ~llATASeKGTVIRVf~v~~G~k-l~eFRR-G~~~~~IySL~Fs~ds~~L~~sS-~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQK-LYEFRR-GTYPVSIYSLSFSPDSQFLAASS-NTETVHIFKLEK 249 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccE-eeeeeC-CceeeEEEEEEECCCCCeEEEec-CCCeEEEEEecc
Confidence 355555555545 5555533321 111000 01134689999999877666554 567777777763
No 195
>KOG0299|consensus
Probab=49.61 E-value=2.7e+02 Score=27.53 Aligned_cols=264 Identities=12% Similarity=0.091 Sum_probs=130.3
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeC----------------CCCCceEEEEE-ECCeEEEEcCC
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSM----------------PDAAQVVAAVF-YKGRIIYSDAN 77 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~----------------~~~~~p~~lav-~~~~ly~td~~ 77 (377)
.+.++++.+.+.++|=+.. .+.|..-+. .|. .+-++.. ....+...+|+ .+++.+.|-..
T Consensus 144 s~~~vals~d~~~~fsask-~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASK-DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecCC-CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 6788999998888865544 456766553 333 3233210 12334567788 55555555555
Q ss_pred CCceEEEc-CCCCceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEE
Q psy5792 78 DGNIRSIN-LDGSNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFS 155 (377)
Q Consensus 78 ~~~I~~~~-~~g~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s 155 (377)
.+.|...+ .+++.+.++..... +.++++.....+ |+.+
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~----------------------------------------lys~ 262 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSE----------------------------------------LYSA 262 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccc----------------------------------------eeee
Confidence 56666666 67777776654444 666665433322 2222
Q ss_pred eCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEc-CCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 156 VNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 156 ~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~-~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
..+ ..+...+++-..+ ...+ ......+.+|+.-..+..+-+--. .+-+++++ . ...+.+.. .+-
T Consensus 263 s~D-rsvkvw~~~~~s~--vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi--~-eesqlifr-------g~~ 327 (479)
T KOG0299|consen 263 SAD-RSVKVWSIDQLSY--VETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI--P-EESQLIFR-------GGE 327 (479)
T ss_pred ecC-CceEEEehhHhHH--HHHH--hCCccceeeechhcccceEEeccccceeEEEec--c-ccceeeee-------CCC
Confidence 211 1254444432211 0000 011222444444433333333211 12244444 2 12334443 344
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCC-----------CC---CceeEEEcCCCCeEEEEecC-C
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGG-----------VD---QPSALAVDPESGYLFWSESG-K 299 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~-----------~~---~P~~iavdp~~g~lywtd~g-~ 299 (377)
+.+..+++ ++..-|++-..++.|..-++-.+.. |.... .. ...++|+-| ...|+-+-.+ .
T Consensus 328 ~sidcv~~--In~~HfvsGSdnG~IaLWs~~KKkp--lf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G 402 (479)
T KOG0299|consen 328 GSIDCVAF--INDEHFVSGSDNGSIALWSLLKKKP--LFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSG 402 (479)
T ss_pred CCeeeEEE--ecccceeeccCCceEEEeeecccCc--eeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCC
Confidence 46877777 4777888988888888777654321 11111 11 345666665 3344444322 1
Q ss_pred CCeEEEEecCCCCeEEEEecC-CCCceEEEEeCCCCEEEEEEe
Q psy5792 300 IPLIARAGLDGKKQTILAQEI-IMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 300 ~~~I~r~~ldG~~~~~l~~~~-~~~P~glalD~~~~~LYw~d~ 341 (377)
.-+++.+.-.-...+.|.+-. ....++|++-..+.+|+..-.
T Consensus 403 ~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 403 CVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred ceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecc
Confidence 335555542222222332221 346788887666666666544
No 196
>KOG0303|consensus
Probab=49.25 E-value=2.6e+02 Score=27.23 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=87.3
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
+.--+++++...++..+....+.|...+..... .++.. ..-..+..+.+.+ +|.++.|-....+|.+.++.
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l------~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr 203 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITL------DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPR 203 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeec------CCCCeEEEEEecc-CCceeeeecccceeEEEcCC
Confidence 455677788777887777777788877775322 22220 2222367788885 57777888888899999986
Q ss_pred CCe-EEEEee-CCCCCceeEEEcCCCCeEEEEecCC--CCeEEEEecCCCCeE-EEEecCCCCceEEEE---eCCCCEEE
Q psy5792 266 GQY-RYVLIS-GGVDQPSALAVDPESGYLFWSESGK--IPLIARAGLDGKKQT-ILAQEIIMPIKDITL---DRKNKRVY 337 (377)
Q Consensus 266 g~~-~~~l~~-~~~~~P~~iavdp~~g~lywtd~g~--~~~I~r~~ldG~~~~-~l~~~~~~~P~glal---D~~~~~LY 337 (377)
... ...-.. .+...++.|-+ .+|.++-|-... ..+|.. .|..+.. -+...++-.-+|+-+ |..++-||
T Consensus 204 ~~~~v~e~~~heG~k~~Raifl--~~g~i~tTGfsr~seRq~aL--wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivY 279 (472)
T KOG0303|consen 204 RGTVVSEGVAHEGAKPARAIFL--ASGKIFTTGFSRMSERQIAL--WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVY 279 (472)
T ss_pred CCcEeeecccccCCCcceeEEe--ccCceeeeccccccccceec--cCcccccCcceeEEeccCCceEEeeecCCCCEEE
Confidence 543 222211 23455677777 466766554321 112211 1211100 011111333345444 66778888
Q ss_pred EEEeCCCCeEEEEEcc
Q psy5792 338 WCYSVGSNVLESMDYS 353 (377)
Q Consensus 338 w~d~~~~~~i~~~~~~ 353 (377)
.+-. +...|.-..+.
T Consensus 280 l~GK-GD~~IRYyEit 294 (472)
T KOG0303|consen 280 LCGK-GDSSIRYFEIT 294 (472)
T ss_pred EEec-CCcceEEEEec
Confidence 8887 77777776665
No 197
>KOG2139|consensus
Probab=49.24 E-value=2.5e+02 Score=27.05 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=83.4
Q ss_pred EEEECCCCEEEEEEcCCCcEEE-EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 190 VDFHAAEDYIYWVDIDHGTISR-THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 190 l~~d~~~~~ly~sd~~~~~I~~-~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
+++-.+.+-.+|++.......| +++-++..-.+..+ .+-.-+..|+-...+..|--+......|+.-+++...
T Consensus 156 lavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~------pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 156 LAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQD------PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ 229 (445)
T ss_pred eeeeecceeEEEEcCcccccccccccccccchhheeC------CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC
Confidence 3444557888898865433222 11222233223320 1111234444443322232223345578888888777
Q ss_pred EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEE-EecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeE
Q psy5792 269 RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIAR-AGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVL 347 (377)
Q Consensus 269 ~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r-~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i 347 (377)
...|..-++..-.-+--.|.+.+||-+......+++. .++=-+.+..+.+ +..++-.-++.+.+|.++-. +.-++
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---grvqtacWspcGsfLLf~~s-gsp~l 305 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---GRVQTACWSPCGSFLLFACS-GSPRL 305 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---CceeeeeecCCCCEEEEEEc-CCceE
Confidence 6666533344444556677666666664321223331 1122233334333 24556666788899999999 99999
Q ss_pred EEEEccCC
Q psy5792 348 ESMDYSGG 355 (377)
Q Consensus 348 ~~~~~~G~ 355 (377)
+++.+++.
T Consensus 306 ysl~f~~~ 313 (445)
T KOG2139|consen 306 YSLTFDGE 313 (445)
T ss_pred EEEeecCC
Confidence 99998865
No 198
>KOG0286|consensus
Probab=49.17 E-value=2.3e+02 Score=26.51 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=55.8
Q ss_pred ceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEE-EEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE-
Q psy5792 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGREN-IIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR- 263 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~-i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~- 263 (377)
.+-++.|.+ .+.-|.+-..++..+..++.-. ++. +.. +.........+++- .+|+|.++-.....+.+-+
T Consensus 231 DINsv~ffP-~G~afatGSDD~tcRlyDlRaD-~~~a~ys-----~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 231 DINSVRFFP-SGDAFATGSDDATCRLYDLRAD-QELAVYS-----HDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred ccceEEEcc-CCCeeeecCCCceeEEEeecCC-cEEeeec-----cCcccCCceeEEEc-ccccEEEeeecCCceeEeec
Confidence 466777777 6677777666677776776532 222 222 11223347788998 4666666655555666644
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCC
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPE 288 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~ 288 (377)
|.|... .++.+.-.+...|.+.|.
T Consensus 303 lk~e~v-g~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 303 LKGERV-GVLAGHENRVSCLGVSPD 326 (343)
T ss_pred cccceE-EEeeccCCeeEEEEECCC
Confidence 444443 344445677788888774
No 199
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=47.64 E-value=3.2e+02 Score=27.83 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 65 VFYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 65 av~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.+.++.||+++.. +.|+.+| .+|+.+
T Consensus 66 vv~~g~vyv~s~~-g~v~AlDa~TGk~l 92 (527)
T TIGR03075 66 LVVDGVMYVTTSY-SRVYALDAKTGKEL 92 (527)
T ss_pred EEECCEEEEECCC-CcEEEEECCCCcee
Confidence 4679999998764 4688888 778654
No 200
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=46.25 E-value=5.1 Score=24.57 Aligned_cols=20 Identities=5% Similarity=-0.114 Sum_probs=13.6
Q ss_pred cCCCCCCcee--ccccCCCccc
Q psy5792 119 YNKNESKVQQ--VLGPLSKVSL 138 (377)
Q Consensus 119 C~~~~g~Cs~--~C~~~~~~~~ 138 (377)
|..++++|+. .|.+.++++.
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~ 22 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYT 22 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEE
T ss_pred CCCCCCCCCCCcEeecCCCCEE
Confidence 5667788876 7888888655
No 201
>KOG4378|consensus
Probab=45.68 E-value=3.3e+02 Score=27.42 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=72.9
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCC-CcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVD-QFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~-~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
+.+.+++|.+.+.+|--.. ..|.|....+....+.+-+. .+-+ ..+-|.+.+..+.|..+-...+.+..-+
T Consensus 122 stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~-------~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFT-------IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred ceeEEEEecCCcceeEEec-cCCcEEEEecccCcccccee-------cCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 5578888887665554322 34556555554333333332 2222 2445666777788888877788888888
Q ss_pred cCCCeEEEEeeCCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 264 LTGQYRYVLISGGVDQP-SALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
..|....--......-| +||.+.|.+-.|+++-- -..+|.-.+....
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINIYDIRSQ 241 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEEeecccc
Confidence 88765322111112234 89999999999999873 3578888776643
No 202
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=43.52 E-value=1.9e+02 Score=31.45 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCCEEEEEEcCCCeEEEE-eeCCCCCceeEEEcCCCCeEEE-Eec-C--CCCeEEEEecC--CCCeEEEEe
Q psy5792 246 AQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVDPESGYLFW-SES-G--KIPLIARAGLD--GKKQTILAQ 318 (377)
Q Consensus 246 ~~~lYwtd~~~~~I~~~~~~g~~~~~l-~~~~~~~P~~iavdp~~g~lyw-td~-g--~~~~I~r~~ld--G~~~~~l~~ 318 (377)
++..|+++ .+++|..++.+|...+++ +... .....-++.|...+|=+ +.. + ..+.|++.+|+ |++...|--
T Consensus 319 tkiAfv~~-~~~~L~~~D~dG~n~~~ve~~~~-~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 319 AKLAFRND-VTGNLAYIDYTKGASRAVEIEDT-ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eeEEEEEc-CCCeEEEEecCCCCceEEEecCC-CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 45567776 335999999999887766 5542 22234467777777777 432 2 25789999887 455444433
Q ss_pred cCCCCceEEEEe-CCCCEEEEEEeCCCCe
Q psy5792 319 EIIMPIKDITLD-RKNKRVYWCYSVGSNV 346 (377)
Q Consensus 319 ~~~~~P~glalD-~~~~~LYw~d~~~~~~ 346 (377)
++..-|.--.+. -.+--+|++|. .+++
T Consensus 397 e~aaiprwrv~e~gdt~ivyv~~a-~nn~ 424 (912)
T TIGR02171 397 ENAAIPRWRVLENGDTVIVYVSDA-SNNK 424 (912)
T ss_pred ccccccceEecCCCCeEEEEEcCC-CCCc
Confidence 345556665553 22346788888 6544
No 203
>KOG0301|consensus
Probab=42.99 E-value=4.2e+02 Score=27.79 Aligned_cols=94 Identities=12% Similarity=0.058 Sum_probs=43.8
Q ss_pred EeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC
Q psy5792 155 SVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234 (377)
Q Consensus 155 s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~ 234 (377)
+.++.|.|+.-+++|.-. +-.....+..+.+++-. .+.+.++-.+++++.-.+.+ .-.++|.. ..
T Consensus 195 ScsNDg~Ir~w~~~ge~l-----~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~-e~~q~I~l--------Pt 259 (745)
T KOG0301|consen 195 SCSNDGSIRLWDLDGEVL-----LEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD-ECVQVITL--------PT 259 (745)
T ss_pred eecCCceEEEEeccCcee-----eeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC-ceEEEEec--------Cc
Confidence 444455577777755422 11111222345555332 55666666666666555554 11222221 22
Q ss_pred CCcceEEEeccCCeEEEEcCCCCEEEEEEcC
Q psy5792 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265 (377)
Q Consensus 235 ~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~ 265 (377)
...++..+= .++.|+..-+ .++|++++-+
T Consensus 260 tsiWsa~~L-~NgDIvvg~S-DG~VrVfT~~ 288 (745)
T KOG0301|consen 260 TSIWSAKVL-LNGDIVVGGS-DGRVRVFTVD 288 (745)
T ss_pred cceEEEEEe-eCCCEEEecc-CceEEEEEec
Confidence 234443332 3666765433 4566665554
No 204
>KOG0282|consensus
Probab=42.95 E-value=3.5e+02 Score=26.95 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=69.5
Q ss_pred EEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCC
Q psy5792 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN 257 (377)
Q Consensus 178 ~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~ 257 (377)
+..+.....|..+.+.+.+.++|++-..+++|...++.......-.. ..++....|.+=. .+.=|++.....
T Consensus 293 ~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-------~hLg~i~~i~F~~-~g~rFissSDdk 364 (503)
T KOG0282|consen 293 LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-------RHLGAILDITFVD-EGRRFISSSDDK 364 (503)
T ss_pred EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-------hhhhheeeeEEcc-CCceEeeeccCc
Confidence 33444455688888999888999998888999999987433111111 3455677777653 444455544444
Q ss_pred EEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 258 VIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 258 ~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
.+.+-..+-.. .+.+.......-..|++.| ++..+-+..- ...|....
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~-dN~i~ifs 413 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSM-DNYIAIFS 413 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhcc-CceEEEEe
Confidence 44444433221 1122233445556788888 5666666542 34554443
No 205
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=42.70 E-value=3.2e+02 Score=26.41 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=94.7
Q ss_pred eEEEEEECCCCEEEEEEcCC---CcEEEEEcCCC-----CcEEEEeccccCCCCCCCCcceEEEeccCCeEEE-EcCC--
Q psy5792 187 AAKVDFHAAEDYIYWVDIDH---GTISRTHRDGT-----GRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW-SDPK-- 255 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~---~~I~~~~~~G~-----~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYw-td~~-- 255 (377)
..++.....++.|++..... ..++.++++.. ..+.+.. ...... -.++..++.+|+ |+..
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~--------~~~~~~-~~v~~~~~~~yi~Tn~~a~ 299 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP--------REDGVE-YYVDHHGDRLYILTNDDAP 299 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE--------SSSS-E-EEEEEETTEEEEEE-TT-T
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC--------CCCceE-EEEEccCCEEEEeeCCCCC
Confidence 55777777788888765432 46888888753 2333433 222222 234444777776 5543
Q ss_pred CCEEEEEEcCCCe----EEEEeeCC-CCCceeEEEcCCCCeEEEEecC-CCCeEEEEecC-CCCeEEEEecCCCCceEEE
Q psy5792 256 ENVIEVARLTGQY----RYVLISGG-VDQPSALAVDPESGYLFWSESG-KIPLIARAGLD-GKKQTILAQEIIMPIKDIT 328 (377)
Q Consensus 256 ~~~I~~~~~~g~~----~~~l~~~~-~~~P~~iavdp~~g~lywtd~g-~~~~I~r~~ld-G~~~~~l~~~~~~~P~gla 328 (377)
+++|.+++++... ..+++... .....++.+ .+++|++.... ..++|...+++ +.....+.........++.
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~ 377 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVS 377 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEE
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccC
Confidence 5799999998654 33555532 224567766 57788887642 25789999999 5544444433334445666
Q ss_pred EeCCCCEEEEEEe--CCCCeEEEEEccCCceE
Q psy5792 329 LDRKNKRVYWCYS--VGSNVLESMDYSGGSKM 358 (377)
Q Consensus 329 lD~~~~~LYw~d~--~~~~~i~~~~~~G~~~~ 358 (377)
-+..+..+++.-. ....+++.+++..+..+
T Consensus 378 ~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 378 GDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp S-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 6777788887655 13468999999855433
No 206
>KOG0276|consensus
Probab=41.59 E-value=4.3e+02 Score=27.51 Aligned_cols=215 Identities=13% Similarity=0.107 Sum_probs=113.1
Q ss_pred CCccccccCCCCeEEEEeCCCCcEEEEEcCCc--EEEEEeCCCCCceEEEE--EECCeEEEEcCCCCceEEEc-CCCCce
Q psy5792 17 AVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK--VAKVVSMPDAAQVVAAV--FYKGRIIYSDANDGNIRSIN-LDGSNS 91 (377)
Q Consensus 17 ~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~--~~~i~~~~~~~~p~~la--v~~~~ly~td~~~~~I~~~~-~~g~~~ 91 (377)
.+.++-++|..+.+ .+.-.+|.+..-+++.. .+.+ .--..|.--+ +....=.++-..+..|+.++ .++...
T Consensus 15 RVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVksf---eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKSF---EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecCCCCceE-EEeeecCeeEEEecccceeeeee---eecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 45677777776665 24446788888899888 3333 2222343222 24444455556678899999 778777
Q ss_pred EEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCCC
Q psy5792 92 TVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKN 170 (377)
Q Consensus 92 ~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~~ 170 (377)
+.+..... ...|+| ||.. ++++-+..+ ..|..-+-+..
T Consensus 91 ~~FeAH~DyIR~iav-HPt~---------------------------------------P~vLtsSDD-m~iKlW~we~~ 129 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAV-HPTL---------------------------------------PYVLTSSDD-MTIKLWDWENE 129 (794)
T ss_pred EEeeccccceeeeee-cCCC---------------------------------------CeEEecCCc-cEEEEeeccCc
Confidence 77765444 555554 5432 344443322 23555555543
Q ss_pred CceeeEEEEecCCCCc-eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeE
Q psy5792 171 ESKVTQVLGPLSKVSL-AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249 (377)
Q Consensus 171 ~~~~~~~~~~~~~~~~-~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~l 249 (377)
-. ....+++-.+ ...++|.+.+..-|.+-.-..+|...++......-... ..-...+.+-+=..++.=
T Consensus 130 wa----~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-------gHekGVN~Vdyy~~gdkp 198 (794)
T KOG0276|consen 130 WA----CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-------GHEKGVNCVDYYTGGDKP 198 (794)
T ss_pred ee----eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-------ccccCcceEEeccCCCcc
Confidence 22 1111233333 56788888888888887777777777775443222222 122234444333222222
Q ss_pred EE-EcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcC
Q psy5792 250 YW-SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287 (377)
Q Consensus 250 Yw-td~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 287 (377)
|. +-.....|.+-+...+.+...+++...+......+|
T Consensus 199 ylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 199 YLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 32 333344566555555444333333334444444444
No 207
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=40.09 E-value=2.9e+02 Score=25.12 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=39.1
Q ss_pred cCCCCeEEEEeCCCCc-EEEE----Ec--CCc-EEEEEeCCCCCceEEEEEECCeEEEEcCCCCceEEEcC
Q psy5792 24 PQSGPFVYGVKTLSHS-LHYV----NI--EVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINL 86 (377)
Q Consensus 24 d~~~~~ly~~d~~~~~-I~~~----~~--dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~ 86 (377)
....+++||++...+. |... ++ .++ .+... .+..-.=.|-.|+++.+|+--.++..|.+.+.
T Consensus 27 ~~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~-Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL 96 (250)
T PF02191_consen 27 PSDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYK-LPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDL 96 (250)
T ss_pred CCCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEE-EeceeccCCeEEECCcEEEEecCCceEEEEEC
Confidence 3456799999886543 3332 22 444 33322 02111224567899999999998899999993
No 208
>PRK13616 lipoprotein LpqB; Provisional
Probab=39.61 E-value=4.6e+02 Score=27.26 Aligned_cols=156 Identities=6% Similarity=-0.067 Sum_probs=84.1
Q ss_pred ceEEEEEECCCCEEEEEEc-------CCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcC----
Q psy5792 186 LAAKVDFHAAEDYIYWVDI-------DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP---- 254 (377)
Q Consensus 186 ~~~~l~~d~~~~~ly~sd~-------~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~---- 254 (377)
.+...++.+.++.+.++.. ....|+.....|.. +.+... ..+..| ..++.++.|++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g------~~~t~P---sWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEG------HSLTRP---SWSLDADAVWVVVDGNTV 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecC------CCCCCc---eECCCCCceEEEecCcce
Confidence 4556667777777766652 23478877775544 444331 223333 45554555555422
Q ss_pred -------CCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEE---ecCCCCeEEE-----Eec
Q psy5792 255 -------KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA---GLDGKKQTIL-----AQE 319 (377)
Q Consensus 255 -------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~---~ldG~~~~~l-----~~~ 319 (377)
..+.|.+..+++...+. . .-..+..+.+.|...+|.+.-. .+|+.+ ..++.. ..+ +..
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~--~-~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~-~~l~~~~~l~~ 493 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS--R-VPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQ-YALTNPREVGP 493 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh--c-cCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCc-eeecccEEeec
Confidence 22355555555543222 1 1234789999998888888753 366663 333322 333 111
Q ss_pred CCCC-ceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEE
Q psy5792 320 IIMP-IKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQ 359 (377)
Q Consensus 320 ~~~~-P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~ 359 (377)
.+.. +..+.-- .++.|+..-......++.++++|.....
T Consensus 494 ~l~~~~~~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 494 GLGDTAVSLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccCCccccceEe-cCCEEEEEecCCCCceEEEecCCccccc
Confidence 2333 3455543 4566776544244669999999876443
No 209
>KOG1538|consensus
Probab=39.05 E-value=4.9e+02 Score=27.42 Aligned_cols=241 Identities=11% Similarity=0.031 Sum_probs=118.8
Q ss_pred ccCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCceEEEc-
Q psy5792 10 TRNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNIRSIN- 85 (377)
Q Consensus 10 ~~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I~~~~- 85 (377)
-++|.++-+..++.-+++..|..+ ..+++...|. ||+ ..++- .+-.-.+-+|+ .++..|-+-..+..+...+
T Consensus 7 ~r~~~~hci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llqtLK--gHKDtVycVAys~dGkrFASG~aDK~VI~W~~ 82 (1081)
T KOG1538|consen 7 WRDKAEHCINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFASGSADKSVIIWTS 82 (1081)
T ss_pred hhcccccchheeEECCCCceEEEe--cCCEEEEEeCCCcccccccc--cccceEEEEEEccCCceeccCCCceeEEEecc
Confidence 367778888889999998888554 4566888887 566 77774 45555677777 6677776655544433333
Q ss_pred -CCCCceEEEecCCCceeEEeeecCCCCcccCCCcCCCCCCcee---ccccCCCccc-cC-----CcC------CCc-CC
Q psy5792 86 -LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ---VLGPLSKVSL-AA-----KVD------FHA-GI 148 (377)
Q Consensus 86 -~~g~~~~~~~~~~~p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~---~C~~~~~~~~-~~-----G~~------~C~-~~ 148 (377)
..|.-. |+-.. .+.|.. ..+|+| .|..+..+.+ ++ -|. .|. ..
T Consensus 83 klEG~Lk--------------YSH~D-----~IQCMs-FNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 83 KLEGILK--------------YSHND-----AIQCMS-FNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTN 142 (1081)
T ss_pred cccceee--------------eccCC-----eeeEee-cCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecC
Confidence 333211 11110 011332 246777 4777666666 11 122 444 22
Q ss_pred C-cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCC-----EEEEEEcCCCcEEEEEcCCCCcEEE
Q psy5792 149 S-DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED-----YIYWVDIDHGTISRTHRDGTGRENI 222 (377)
Q Consensus 149 ~-~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~-----~ly~sd~~~~~I~~~~~~G~~~~~i 222 (377)
+ .++.....++ .|.--+..+.+. ...--|-...+.+.++++.+..+ .+=+.|+ +.++.-..++|.....-
T Consensus 143 DGqylalG~~nG-TIsiRNk~gEek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW-~qTLSFy~LsG~~Igk~ 218 (1081)
T KOG1538|consen 143 DGQYLALGMFNG-TISIRNKNGEEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW-GQTLSFYQLSGKQIGKD 218 (1081)
T ss_pred CCcEEEEeccCc-eEEeecCCCCcc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEec-cceeEEEEecceeeccc
Confidence 2 3444444332 243323333322 11111222334466676665432 3444443 23444455565432111
Q ss_pred EeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCC
Q psy5792 223 IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPE 288 (377)
Q Consensus 223 ~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~ 288 (377)
.. -++ .|..|..-..+..+.. -...+.+..+..+|-..-++.. .....+.+++.|.
T Consensus 219 r~-------L~F-dP~CisYf~NGEy~Li-GGsdk~L~~fTR~GvrLGTvg~-~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 219 RA-------LNF-DPCCISYFTNGEYILL-GGSDKQLSLFTRDGVRLGTVGE-QDSWIWTVQAKPN 274 (1081)
T ss_pred cc-------CCC-CchhheeccCCcEEEE-ccCCCceEEEeecCeEEeeccc-cceeEEEEEEccC
Confidence 11 111 3777766654444433 2233444455555544444433 2345677777763
No 210
>KOG0269|consensus
Probab=37.15 E-value=2.7e+02 Score=29.55 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=92.2
Q ss_pred EEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc
Q psy5792 201 WVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP 280 (377)
Q Consensus 201 ~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P 280 (377)
.+-..+|.|...+++-..++.... ...+.-.....+.+....-+|..+-...+.|-..++.-+.......++-...
T Consensus 104 AT~s~nG~i~vWdlnk~~rnk~l~----~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 104 ATCSTNGVISVWDLNKSIRNKLLT----VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred eeecCCCcEEEEecCccccchhhh----HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 344467788888887543333321 0002223377778887888899998888999999998765544555567788
Q ss_pred eeEEEcCCCCeEEEEecCCCCeEEEEecCCCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEE
Q psy5792 281 SALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESM 350 (377)
Q Consensus 281 ~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~ 350 (377)
|.++..|..++.|.+-. +++-+...+|.-..+-.+--. .+.--++.+|..-.+-|.+-. +..+..++
T Consensus 180 RDV~fsp~~~~~F~s~~-dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATG-GRDK~vki 246 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIH-DSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATG-GRDKMVKI 246 (839)
T ss_pred hceeeccCCCceEEEec-CCceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeec-CCCccEEE
Confidence 99999999999999875 467888888775543322111 122225777766677777766 54444443
No 211
>KOG0269|consensus
Probab=35.73 E-value=5.4e+02 Score=27.44 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=70.0
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~ 230 (377)
++.+....|.|..-++.-... ...+..+. .-..+.-++|+..+-++.++-..++.|...++....-.....
T Consensus 102 lIAT~s~nG~i~vWdlnk~~r--nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~------ 173 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIR--NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR------ 173 (839)
T ss_pred hheeecCCCcEEEEecCcccc--chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc------
Confidence 444444445576666654322 01111111 223477899999999999998888888888876433222222
Q ss_pred CCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 231 ~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
..-..++++++-+..++.|.+-...|.++.-++.-.
T Consensus 174 -~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 174 -SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred -ccchhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 244458899999888999999888888888888654
No 212
>KOG0294|consensus
Probab=32.37 E-value=4.4e+02 Score=24.95 Aligned_cols=74 Identities=14% Similarity=0.043 Sum_probs=41.3
Q ss_pred CceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEE-EeccCCeEEEEcCCCCEEEEEE
Q psy5792 185 SLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA-VDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 185 ~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~ia-vD~~~~~lYwtd~~~~~I~~~~ 263 (377)
.++..+-++. ++.|++.- .+..|...+.|....-..+. ..-+++.+|+ ++-..+.+..|-...+.|.+-+
T Consensus 209 ~r~l~~~~l~-~~~L~vG~-d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 209 KRILCATFLD-GSELLVGG-DNEWISLKDTDSDTPLTEFL-------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccceeeeecC-CceEEEec-CCceEEEeccCCCccceeee-------cchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 4455555554 45555543 34566666666322222222 2344677777 4433446667777778777766
Q ss_pred cCCC
Q psy5792 264 LTGQ 267 (377)
Q Consensus 264 ~~g~ 267 (377)
++..
T Consensus 280 ~~~~ 283 (362)
T KOG0294|consen 280 IDME 283 (362)
T ss_pred cccc
Confidence 6654
No 213
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=32.07 E-value=3.8e+02 Score=24.16 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=42.9
Q ss_pred CCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEE
Q psy5792 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252 (377)
Q Consensus 183 ~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwt 252 (377)
...+..||||.+.++.||=.. ..++|+.++........+-.. .. ...-.+.+.++.++|..++|.+.
T Consensus 25 ~ge~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s-~~-~~al~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 25 AGESLVGIDFRPANGQLYGLG-STGRLYTINPATGAATPVGAS-PL-TVALSGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred CCCeEEEEEeecCCCCEEEEe-CCCcEEEEECCCCeEEEeecc-cc-cccccCceEEEecCcccCcEEEE
Confidence 345689999999999999774 468999999875443333110 00 00111236677777777777665
No 214
>KOG4328|consensus
Probab=31.40 E-value=5.4e+02 Score=25.62 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=103.6
Q ss_pred EEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCceEEEEEECCCCEEEEEEcCC-CcEEEEEcCCCCcEEEEeccccC
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSLAAKVDFHAAEDYIYWVDIDH-GTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~d~~~~~ly~sd~~~-~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
-+++..-.|.|+-.++++.-. +.++.+. ......++++...++.+++.+... -.++-.+.+|+..+.+..
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~---e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l----- 320 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNIS---EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL----- 320 (498)
T ss_pred heeeeccCceeeeeeecchhh---HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-----
Confidence 344554556799999887644 2222221 222366888888888999887543 133344556665555443
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEc---CCCeEEEEeeC-CCCCceeEEEcCCCCeEEEEecCCCCeEEE
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARL---TGQYRYVLISG-GVDQPSALAVDPESGYLFWSESGKIPLIAR 305 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~---~g~~~~~l~~~-~~~~P~~iavdp~~g~lywtd~g~~~~I~r 305 (377)
... .+.++++.|....++.|-...++...-++ .++....|... .-....+....|..|.|--|.....-+|+-
T Consensus 321 --h~k-KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 321 --HKK-KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred --hhc-ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 222 69999999999988888776554433333 23221122221 123346667788888866666433345544
Q ss_pred Ee-cCC--CCeEEEEecC-C-CC--ceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 306 AG-LDG--KKQTILAQEI-I-MP--IKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 306 ~~-ldG--~~~~~l~~~~-~-~~--P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.. +.. ....+|.... . .| |.--+.|+... |..+-. ....|..++-+|+
T Consensus 398 ss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~-~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 398 SSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGR-YPRPIDVFDGNGG 452 (498)
T ss_pred cccccccCCccceeeccCcccccccchhheeCCCcc-EEEEec-cCcceeEEcCCCC
Confidence 42 111 1122333321 1 22 33344565333 444444 5667777776654
No 215
>PTZ00421 coronin; Provisional
Probab=30.96 E-value=5.7e+02 Score=25.82 Aligned_cols=195 Identities=9% Similarity=0.040 Sum_probs=103.8
Q ss_pred EEEEeCCCCeEEEEEcCCCCce--eeEEEEecCC-CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEecccc
Q psy5792 152 ILFSVNSGYDIMGIKYNKNESK--VTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVET 228 (377)
Q Consensus 152 l~~s~~~~~~I~~~~l~~~~~~--~~~~~~~~~~-~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~ 228 (377)
++++....+.|+..++...... ....+..+.+ ...+..+++++..+.+.++-...+.|...++........+.
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~---- 165 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK---- 165 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc----
Confidence 4444444456777776543210 0011222222 34477899988666666666667888888887433222222
Q ss_pred CCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe-EEEEeeCCCCCceeEEEcCCCCeEEEEecC--CCCeEEE
Q psy5792 229 GDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLFWSESG--KIPLIAR 305 (377)
Q Consensus 229 ~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~lywtd~g--~~~~I~r 305 (377)
.....+.+|++.+ .+.+..+-...++|.+.++.... ...+..........+...+..+.++-+-.. ....|..
T Consensus 166 ---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 166 ---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred ---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 2234577888886 46666777778899999986443 223322111122344455555555544221 1345666
Q ss_pred EecCCC-CeEEEEecCCC-CceEEEEeCCCCEEEEEEeCCCCeEEEEEccCC
Q psy5792 306 AGLDGK-KQTILAQEIIM-PIKDITLDRKNKRVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 306 ~~ldG~-~~~~l~~~~~~-~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~ 355 (377)
.++... ........... ...-...|.....||.+-. +.+.|...++..+
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~~ 292 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK-GEGNIRCFELMNE 292 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe-CCCeEEEEEeeCC
Confidence 665432 22222211111 1112345666677777766 6778888887744
No 216
>KOG1539|consensus
Probab=30.94 E-value=7e+02 Score=26.87 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=56.8
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEEEEE-ECCeEEEEcCCCCce--EEEc-CCCCc
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVAAVF-YKGRIIYSDANDGNI--RSIN-LDGSN 90 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav-~~~~ly~td~~~~~I--~~~~-~~g~~ 90 (377)
+.++.+..--++.-+..+-...|.+..-||+++ +..++...+...+.++.+ .+.-|-+|.+.++++ +..| .+|.
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~- 323 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV- 323 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-
Confidence 456777777677777667667788999999999 555542233445666666 666777777766554 3445 4553
Q ss_pred eEEEecCC---C-ceeEEeeec
Q psy5792 91 STVLRNNA---G-ISDFILFSV 108 (377)
Q Consensus 91 ~~~~~~~~---~-p~~i~v~~~ 108 (377)
++.++... . |..|++|..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~ 345 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGS 345 (910)
T ss_pred chheeeccCCCCCchheeeecc
Confidence 33333211 1 667776643
No 217
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.65 E-value=6.5e+02 Score=26.35 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=19.5
Q ss_pred ECCeEEEEcCCCCceEEEc-CCCCceEE
Q psy5792 67 YKGRIIYSDANDGNIRSIN-LDGSNSTV 93 (377)
Q Consensus 67 ~~~~ly~td~~~~~I~~~~-~~g~~~~~ 93 (377)
.+|.||++-. .+++.-.| .+|+.+=.
T Consensus 213 vgdtlYvcTp-hn~v~ALDa~TGkekWk 239 (773)
T COG4993 213 VGDTLYVCTP-HNRVFALDAATGKEKWK 239 (773)
T ss_pred ECCEEEEecC-cceeEEeeccCCceeee
Confidence 7899999976 66788888 67766433
No 218
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=29.19 E-value=47 Score=19.70 Aligned_cols=19 Identities=5% Similarity=-0.186 Sum_probs=13.3
Q ss_pred cCCCCCCcee--ccccCCCccc
Q psy5792 119 YNKNESKVQQ--VLGPLSKVSL 138 (377)
Q Consensus 119 C~~~~g~Cs~--~C~~~~~~~~ 138 (377)
|... ..|.+ .|++..+++.
T Consensus 5 C~~~-~~C~~~~~C~~~~g~~~ 25 (39)
T smart00179 5 CASG-NPCQNGGTCVNTVGSYR 25 (39)
T ss_pred CcCC-CCcCCCCEeECCCCCeE
Confidence 5543 56776 8998888765
No 219
>smart00181 EGF Epidermal growth factor-like domain.
Probab=29.12 E-value=42 Score=19.56 Aligned_cols=19 Identities=0% Similarity=-0.242 Sum_probs=13.6
Q ss_pred CCcee-ccccCCCccc---cCCc
Q psy5792 124 SKVQQ-VLGPLSKVSL---AAKV 142 (377)
Q Consensus 124 g~Cs~-~C~~~~~~~~---~~G~ 142 (377)
..|++ .|++..+++. +.||
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~ 28 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGY 28 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCC
Confidence 57888 8998877765 4554
No 220
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=28.63 E-value=2.8e+02 Score=25.18 Aligned_cols=54 Identities=17% Similarity=0.292 Sum_probs=30.9
Q ss_pred cCCCCeEEEEecCCCCeEEEEecC--------CCCeEEEEecC----CCCceEEEEeCCCCEEEEEEe
Q psy5792 286 DPESGYLFWSESGKIPLIARAGLD--------GKKQTILAQEI----IMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 286 dp~~g~lywtd~g~~~~I~r~~ld--------G~~~~~l~~~~----~~~P~glalD~~~~~LYw~d~ 341 (377)
|..+-+||+++ ++++|+|..+. |+..+++.+.. +..++=-.|+-.++.|..++.
T Consensus 141 D~~n~yLFfa~--DnGkiYRs~~~i~nFP~~fgs~~~vvmsd~~~nLFEA~~VYkv~G~~~YLmiVEa 206 (271)
T PF03664_consen 141 DDTNMYLFFAG--DNGKIYRSSMPIGNFPGGFGSSYTVVMSDTRNNLFEAVQVYKVKGQNQYLMIVEA 206 (271)
T ss_pred cCCceEEEEcC--CCCcEEEeccchhhCCCCCCCceEEEEecCccceeeeeEEEEEcCCceEEEEEEE
Confidence 44677899987 57899999653 33455554432 222333344444555555554
No 221
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=28.59 E-value=58 Score=21.37 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=18.7
Q ss_pred CCCceEEEEeCCCCEEEEEEe
Q psy5792 321 IMPIKDITLDRKNKRVYWCYS 341 (377)
Q Consensus 321 ~~~P~glalD~~~~~LYw~d~ 341 (377)
-.-|.||.+|..++.|.++-.
T Consensus 10 ~~LP~gLs~d~~tG~isGtp~ 30 (49)
T PF05345_consen 10 GGLPSGLSLDPSTGTISGTPT 30 (49)
T ss_pred CCCCCcEEEeCCCCEEEeecC
Confidence 467999999999999999866
No 222
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=28.52 E-value=1.9e+02 Score=26.93 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=34.3
Q ss_pred CCeEEEEeCCCCcEEEEEcCCc-EEEEEeCCCCCceEE-----EEEECCeEEEEcCC
Q psy5792 27 GPFVYGVKTLSHSLHYVNIEVK-VAKVVSMPDAAQVVA-----AVFYKGRIIYSDAN 77 (377)
Q Consensus 27 ~~~ly~~d~~~~~I~~~~~dG~-~~~i~~~~~~~~p~~-----lav~~~~ly~td~~ 77 (377)
+++||-+|.++|-|+.+.-+-. ...+++.+......| +++.++.||+....
T Consensus 63 ngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~G 119 (291)
T PF06079_consen 63 NGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSIG 119 (291)
T ss_dssp TTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE--S
T ss_pred CCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeeccCC
Confidence 5799999999999999988744 666664433333333 47799999987653
No 223
>KOG0284|consensus
Probab=28.04 E-value=1.6e+02 Score=28.78 Aligned_cols=98 Identities=10% Similarity=0.120 Sum_probs=0.0
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
+.++.+...+..+.=.| ..+-|....++-.+.+.+.. ..-..++++|+-+ ++.-|.|-...++|.+-+..-
T Consensus 141 Vr~m~ws~~g~wmiSgD-~gG~iKyWqpnmnnVk~~~a-------hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGD-KGGMIKYWQPNMNNVKIIQA-------HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ceeEEEccCCCEEEEcC-CCceEEecccchhhhHHhhH-------hhhhhhheeccCC-CCceeEEecCCCeEEEEeccC
Q ss_pred CeEEEEeeCCCCCceeEEEcCCCCeEE
Q psy5792 267 QYRYVLISGGVDQPSALAVDPESGYLF 293 (377)
Q Consensus 267 ~~~~~l~~~~~~~P~~iavdp~~g~ly 293 (377)
...+.++++....+++++=+|..|.|+
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeE
No 224
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=27.61 E-value=2.7e+02 Score=25.14 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=35.7
Q ss_pred cCCccccccCCCCeEEEEeCCCCcEEEEEcCCc-EEEEE----eCCCCCceEEEEE--ECCeEEEE
Q psy5792 16 GAVASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-VAKVV----SMPDAAQVVAAVF--YKGRIIYS 74 (377)
Q Consensus 16 ~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~~~i~----~~~~~~~p~~lav--~~~~ly~t 74 (377)
+...|+..=+.+++||-+ ...++|+.+|.... .+.+- .......++++++ .-|+|.+.
T Consensus 27 e~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGL-GSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred CeEEEEEeecCCCCEEEE-eCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE
Confidence 344555666788899988 55688999999877 55551 0111123666666 44555444
No 225
>KOG4378|consensus
Probab=27.13 E-value=6.7e+02 Score=25.39 Aligned_cols=122 Identities=9% Similarity=0.020 Sum_probs=73.8
Q ss_pred cEEEEEeCCCCeEEEEEcCCCCceeeEEEEecC-CCCc-eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCC-cEEEEecc
Q psy5792 150 DFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS-KVSL-AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTG-RENIIEYV 226 (377)
Q Consensus 150 ~~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~~~-~~~~-~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~-~~~i~~~~ 226 (377)
.+++...++.|.+.-.+..+... +.... ..+. ..||.|.+.+..|+++=-...+|+..+..... ...+.-
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp-----~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-- 249 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSP-----IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-- 249 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCc-----ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--
Confidence 36777777777788888877643 11111 1111 46899999999999987777888888775311 112221
Q ss_pred ccCCCCCCCC-cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEE-EeeCCCCCceeEEEcC
Q psy5792 227 ETGDPTPVDQ-FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV-LISGGVDQPSALAVDP 287 (377)
Q Consensus 227 ~~~~~~~~~~-p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~-l~~~~~~~P~~iavdp 287 (377)
.. -..+|+-. .|.+..+-..+++|...++.+....+ +....-.....||.-|
T Consensus 250 --------~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 250 --------SHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred --------cCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 12 34567764 46666666778899999998865332 2222233355666654
No 226
>KOG1272|consensus
Probab=26.95 E-value=6.1e+02 Score=25.37 Aligned_cols=202 Identities=16% Similarity=0.147 Sum_probs=97.7
Q ss_pred EEEEEeCCCCeEEEEEcCCCCceeeEEEEe-cCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccC
Q psy5792 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGP-LSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETG 229 (377)
Q Consensus 151 ~l~~s~~~~~~I~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~ 229 (377)
||+++.+..|-+.-.++..+.. +.. -++.+....+.-.+.+.-+-. -..+|.|.-.+++.. +.++.
T Consensus 222 fLL~~~~~~G~L~Y~DVS~Gkl-----Va~~~t~~G~~~vm~qNP~NaVih~-GhsnGtVSlWSP~sk--ePLvK----- 288 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKL-----VASIRTGAGRTDVMKQNPYNAVIHL-GHSNGTVSLWSPNSK--EPLVK----- 288 (545)
T ss_pred heeeecccCCceEEEeechhhh-----hHHHHccCCccchhhcCCccceEEE-cCCCceEEecCCCCc--chHHH-----
Confidence 5666666665565555543321 111 122333444444443333332 234567776776643 33322
Q ss_pred CCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCc-eeEEEcCCCCeEEEEecCCCCeEEEEec
Q psy5792 230 DPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQP-SALAVDPESGYLFWSESGKIPLIARAGL 308 (377)
Q Consensus 230 ~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P-~~iavdp~~g~lywtd~g~~~~I~r~~l 308 (377)
.....+...+||||. +|+.-.|.....++.+-++.... .+.+.....| ..+++. ..|.|-. -+|+.-.|++=.+
T Consensus 289 iLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~tp~~a~~ls~S-qkglLA~-~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFY--QLHTYRTPHPASNLSLS-QKGLLAL-SYGDHVQIWKDAL 363 (545)
T ss_pred HHhcCCCcceEEECC-CCcEEeecccccceeEeeecccc--ccceeecCCCccccccc-cccceee-ecCCeeeeehhhh
Confidence 002345588999996 56666777777788888887654 2222112222 345554 3444443 3455667877777
Q ss_pred CCCC--eEEEEecCC-CCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceEEEEecCCCCCccccccc
Q psy5792 309 DGKK--QTILAQEII-MPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNALLDRKS 375 (377)
Q Consensus 309 dG~~--~~~l~~~~~-~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~~~~~~~~~~~p~~~~~~ 375 (377)
+|+. .+....-.+ ....+|-+-+.++-|-+.-. .-+.++-..|..-... ..--.+||.-+||
T Consensus 364 ~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~---~G~tsilVPGsGePN~--Ds~e~nPfetrKQ 428 (545)
T KOG1272|consen 364 KGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA---GGITSILVPGSGEPNY--DSLEDNPFETRKQ 428 (545)
T ss_pred cCCCCCCcchhhhccCcccccceeccHHHeeecccc---CCceeEeccCCCCCCc--chhccCcchhhhH
Confidence 7552 111111111 12233444444444433333 4455555555432211 1123577776654
No 227
>KOG1445|consensus
Probab=26.50 E-value=7.7e+02 Score=25.86 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCC-CEEEEEE-cCCCcEEEEEcCCCC-----cEEEEeccccCCC
Q psy5792 159 GYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAE-DYIYWVD-IDHGTISRTHRDGTG-----RENIIEYVETGDP 231 (377)
Q Consensus 159 ~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~-~~ly~sd-~~~~~I~~~~~~G~~-----~~~i~~~~~~~~~ 231 (377)
.|.|-.+.+.-.+.-...++-.+.+...+..+..|+-+ ++|-++- ...-+|+|+..+|.. .+.++.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt------- 674 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT------- 674 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-------
Confidence 44576666643322001122223344445556555543 3454442 222366677766642 334444
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC
Q psy5792 232 TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311 (377)
Q Consensus 232 ~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~ 311 (377)
.....+..|.+.+...++.-+...+-+|..-++.......-+.+...+..+||-.|....+ -|-- +.++|...+.. +
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~-AtVc-KDg~~rVy~Pr-s 751 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRI-ATVC-KDGTLRVYEPR-S 751 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcce-eeee-cCceEEEeCCC-C
Confidence 3455677888888777776666666678777775432222222345667788887743332 2221 23444443322 1
Q ss_pred CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEccCCceE
Q psy5792 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKM 358 (377)
Q Consensus 312 ~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~G~~~~ 358 (377)
..+-+.+. ..|.| ...-||.|+-. .+.|..+.++-...+
T Consensus 752 ~e~pv~Eg--~gpvg----tRgARi~wacd--gr~viv~Gfdk~SeR 790 (1012)
T KOG1445|consen 752 REQPVYEG--KGPVG----TRGARILWACD--GRIVIVVGFDKSSER 790 (1012)
T ss_pred CCCccccC--CCCcc----CcceeEEEEec--CcEEEEecccccchh
Confidence 22222222 23443 24567777765 355555556544333
No 228
>KOG1272|consensus
Probab=26.40 E-value=5e+02 Score=25.95 Aligned_cols=60 Identities=15% Similarity=0.029 Sum_probs=32.0
Q ss_pred EEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC
Q psy5792 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312 (377)
Q Consensus 251 wtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~ 312 (377)
-+-..++++..-++..+..-+=+-....-.++||||+ +|+.-.|. |...++...++....
T Consensus 267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTt-G~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATT-GLDRKVKIWDLRNFY 326 (545)
T ss_pred EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeec-ccccceeEeeecccc
Confidence 3445566666666655432111111234458999998 55544443 434566666665544
No 229
>KOG1407|consensus
Probab=26.23 E-value=5.2e+02 Score=23.85 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCC-CCcce
Q psy5792 161 DIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV-DQFTD 239 (377)
Q Consensus 161 ~I~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~-~~p~~ 239 (377)
.|+..+...... .. .+.....-+-+...+.++++-+.+.. +.|.-++.. ..+.... ..+ -...-
T Consensus 88 ~ir~wd~r~~k~--~~---~i~~~~eni~i~wsp~g~~~~~~~kd-D~it~id~r--~~~~~~~-------~~~~~e~ne 152 (313)
T KOG1407|consen 88 TIRIWDIRSGKC--TA---RIETKGENINITWSPDGEYIAVGNKD-DRITFIDAR--TYKIVNE-------EQFKFEVNE 152 (313)
T ss_pred eEEEEEeccCcE--EE---EeeccCcceEEEEcCCCCEEEEecCc-ccEEEEEec--ccceeeh-------hcccceeee
Confidence 488877754432 11 11222233445555556666665532 344333332 2222222 112 12455
Q ss_pred EEEeccCCeEEEEcCCCCEEEEEEcCCCeEEEEeeCCCCCceeEEEcCCCCeE
Q psy5792 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292 (377)
Q Consensus 240 iavD~~~~~lYwtd~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l 292 (377)
++.. ..+++|+...+.++|+..+.-.-....-+...-..--.|.+||.+.++
T Consensus 153 ~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 153 ISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred eeec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE
Confidence 6666 678899988888999998876433222222234556789999965543
No 230
>KOG0918|consensus
Probab=26.12 E-value=2.2e+02 Score=27.87 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=24.2
Q ss_pred cceEEEeccCCeEEEEcCCCCEEEEEEcCCCeE
Q psy5792 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR 269 (377)
Q Consensus 237 p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~~ 269 (377)
+.+|-+--..+.||++..--+-|...+.....+
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCCCCC
Confidence 555555545899999999888888888766544
No 231
>KOG0650|consensus
Probab=25.97 E-value=2.1e+02 Score=29.41 Aligned_cols=71 Identities=11% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCC-CeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCeEEEEEcc
Q psy5792 277 VDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK-KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYS 353 (377)
Q Consensus 277 ~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~-~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~i~~~~~~ 353 (377)
-..|....++|..-+||++... .|.-.++.-. -.+.+... ..+...++|++.+..|.... ..+++..++++
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq~---~vRiYdL~kqelvKkL~tg-~kwiS~msihp~GDnli~gs--~d~k~~WfDld 637 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQR---SVRIYDLSKQELVKKLLTG-SKWISSMSIHPNGDNLILGS--YDKKMCWFDLD 637 (733)
T ss_pred CCceeEEEecCCCceEEEEecc---ceEEEehhHHHHHHHHhcC-CeeeeeeeecCCCCeEEEec--CCCeeEEEEcc
Confidence 3468899999999999999742 3444444321 12222322 45666666665444444333 23344444443
No 232
>KOG0918|consensus
Probab=25.83 E-value=1.3e+02 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=30.3
Q ss_pred eeccccCCCCcCCccccccCCCCeEEEEeCCCCcEEEEEcC
Q psy5792 6 VLPYTRNPSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNIE 46 (377)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~d 46 (377)
|..|--.....-.+.+.|..++.+||+..--.|.|+..|..
T Consensus 302 v~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIs 342 (476)
T KOG0918|consen 302 VENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDIS 342 (476)
T ss_pred cccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccC
Confidence 34454444456778889999999999998888888776543
No 233
>KOG1446|consensus
Probab=24.86 E-value=5.9e+02 Score=23.94 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=129.1
Q ss_pred CcCCccccccCCCCeEEEEeCCCCcEEEEEc-CCc-EEEEEeCCCCCceEEEEEECCeE-EEEcCCCCceEEEc-CCCCc
Q psy5792 15 FGAVASTLKPQSGPFVYGVKTLSHSLHYVNI-EVK-VAKVVSMPDAAQVVAAVFYKGRI-IYSDANDGNIRSIN-LDGSN 90 (377)
Q Consensus 15 ~~~~~~~~~d~~~~~ly~~d~~~~~I~~~~~-dG~-~~~i~~~~~~~~p~~lav~~~~l-y~td~~~~~I~~~~-~~g~~ 90 (377)
-+.+.++..+..+..|- +-+..+.|+..|. +|+ .++|.+...+.+-.--+-....+ |=+...+..|+-.+ .+.+.
T Consensus 14 ~~~i~sl~fs~~G~~li-tss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLI-TSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEE-EecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 35688888888776663 3456678888875 666 77775322121111111133343 44445567788777 66666
Q ss_pred eEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEcCC
Q psy5792 91 STVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNK 169 (377)
Q Consensus 91 ~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l~~ 169 (377)
++.+..... +.+|.+... .+.||=-+... .|+--++..
T Consensus 93 lRYF~GH~~~V~sL~~sP~---------------------------------------~d~FlS~S~D~--tvrLWDlR~ 131 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPK---------------------------------------DDTFLSSSLDK--TVRLWDLRV 131 (311)
T ss_pred EEEcCCCCceEEEEEecCC---------------------------------------CCeEEecccCC--eEEeeEecC
Confidence 666654333 445544111 12233323333 387777775
Q ss_pred CCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC--CCCcEEEEeccccCCCCCCCCcceEEEeccCC
Q psy5792 170 NESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD--GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQ 247 (377)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~--G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~ 247 (377)
... +.++.+ ...-..|||+ ++-+|-+-..++.|.-.++. +.+....+... .....+-.+|.+-+.+.
T Consensus 132 ~~c---qg~l~~---~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~----~~~~~ew~~l~FS~dGK 200 (311)
T KOG1446|consen 132 KKC---QGLLNL---SGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFTTFSIT----DNDEAEWTDLEFSPDGK 200 (311)
T ss_pred CCC---ceEEec---CCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCceeEccC----CCCccceeeeEEcCCCC
Confidence 444 333332 2344567898 67777666566566666553 22222222200 02244566788877777
Q ss_pred eEEEEcCCCCEEEE-EEcCCCeEEEEee--CCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC
Q psy5792 248 NIYWSDPKENVIEV-ARLTGQYRYVLIS--GGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD 309 (377)
Q Consensus 248 ~lYwtd~~~~~I~~-~~~~g~~~~~l~~--~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld 309 (377)
.|..+.... .|.+ -..+|....++-. ....-|-+-+..|...++.-... .++|..-++.
T Consensus 201 ~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~--dg~i~vw~~~ 262 (311)
T KOG1446|consen 201 SILLSTNAS-FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD--DGTIHVWNLE 262 (311)
T ss_pred EEEEEeCCC-cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC--CCcEEEEEcC
Confidence 777665553 3443 3446664433322 23445667777787777776653 3566665553
No 234
>KOG0270|consensus
Probab=24.61 E-value=6.9e+02 Score=24.71 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred EEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCCe
Q psy5792 189 KVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQY 268 (377)
Q Consensus 189 ~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~~ 268 (377)
+++.......|..+-....+|...+++-......+. ..-+.+..++..+....+..+-...+++...+..-..
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh-------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Q ss_pred EEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecC--CCCeEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCe
Q psy5792 269 RYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLD--GKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV 346 (377)
Q Consensus 269 ~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ld--G~~~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~ 346 (377)
..-.-..-.....-++.||..-..|++-. ..+.++-+++. |.-..++..-+ ....||.+......+..+.. ....
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~t-ddG~v~~~D~R~~~~~vwt~~AHd-~~ISgl~~n~~~p~~l~t~s-~d~~ 397 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVST-DDGTVYYFDIRNPGKPVWTLKAHD-DEISGLSVNIQTPGLLSTAS-TDKV 397 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEec-CCceEEeeecCCCCCceeEEEecc-CCcceEEecCCCCcceeecc-ccce
Q ss_pred EEEEEccCCceEEE
Q psy5792 347 LESMDYSGGSKMQL 360 (377)
Q Consensus 347 i~~~~~~G~~~~~~ 360 (377)
+..-++++.+.+.+
T Consensus 398 Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSV 411 (463)
T ss_pred EEEEeecCCCCccc
No 235
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=23.69 E-value=1e+02 Score=18.77 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=15.3
Q ss_pred EEEEECCeEEEEcCCCCceEEEc
Q psy5792 63 AAVFYKGRIIYSDANDGNIRSIN 85 (377)
Q Consensus 63 ~lav~~~~ly~td~~~~~I~~~~ 85 (377)
++++.++.||+.+. ++.++.++
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald 37 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALD 37 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEE
T ss_pred CCEEECCEEEEEcC-CCEEEEEe
Confidence 45789999999986 56777766
No 236
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.40 E-value=5.6e+02 Score=24.16 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=28.7
Q ss_pred CceEEEEeCCCCEEEEEEeCCC---CeEEEEEccCCceEEEEe
Q psy5792 323 PIKDITLDRKNKRVYWCYSVGS---NVLESMDYSGGSKMQLKL 362 (377)
Q Consensus 323 ~P~glalD~~~~~LYw~d~~~~---~~i~~~~~~G~~~~~~~~ 362 (377)
..+.|.-|+.+++||++-. .. --|++++..++..+.+..
T Consensus 107 EVSdIlYdP~~D~LLlAR~-DGh~nLGvy~ldr~~g~~~~L~~ 148 (339)
T PF09910_consen 107 EVSDILYDPYEDRLLLARA-DGHANLGVYSLDRRTGKAEKLSS 148 (339)
T ss_pred chhheeeCCCcCEEEEEec-CCcceeeeEEEcccCCceeeccC
Confidence 3566888999999999865 33 368899988776666643
No 237
>KOG3914|consensus
Probab=23.18 E-value=7e+02 Score=24.25 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=76.8
Q ss_pred CccccccCCCCeEEEEeCCCCcEEEEEcCCc-E-EEEEe-CCCCCceEEEEE--ECCeEEEEcCCCCceEEEc-CC---C
Q psy5792 18 VASTLKPQSGPFVYGVKTLSHSLHYVNIEVK-V-AKVVS-MPDAAQVVAAVF--YKGRIIYSDANDGNIRSIN-LD---G 88 (377)
Q Consensus 18 ~~~~~~d~~~~~ly~~d~~~~~I~~~~~dG~-~-~~i~~-~~~~~~p~~lav--~~~~ly~td~~~~~I~~~~-~~---g 88 (377)
|.-++......-|+.+++ .+++..++++++ . ..+.. ...-..|.++.+ ++-.+-++|... ..+.++ .+ |
T Consensus 65 ~~~~~~s~~~~llAv~~~-~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkag-D~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATS-SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAG-DVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeC-CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecC-Cceeeeeeccccc
Confidence 333444444445555555 455667777777 3 33321 134557888877 566777887543 333333 11 3
Q ss_pred CceEEEecCCC-ceeEEeeecCCCCcccCCCcCCCCCCceeccccCCCccccCCcCCCcCCCcEEEEEeCCCCeEEEEEc
Q psy5792 89 SNSTVLRNNAG-ISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKY 167 (377)
Q Consensus 89 ~~~~~~~~~~~-p~~i~v~~~~~~~~~~~~~C~~~~g~Cs~~C~~~~~~~~~~G~~~C~~~~~~l~~s~~~~~~I~~~~l 167 (377)
....++.. .. ...+++ .++ +.+++.+++++ .||....
T Consensus 143 ~~~~~lGh-vSml~dVav-S~D---------------------------------------~~~IitaDRDE-kIRvs~y 180 (390)
T KOG3914|consen 143 RCEPILGH-VSMLLDVAV-SPD---------------------------------------DQFIITADRDE-KIRVSRY 180 (390)
T ss_pred Ccchhhhh-hhhhheeee-cCC---------------------------------------CCEEEEecCCc-eEEEEec
Confidence 33333221 12 444444 222 24788898876 5665555
Q ss_pred CCCCceeeEEEEecCCCCceEEEEEECCCCEEEEEEcCCCcEEEEEcC
Q psy5792 168 NKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRD 215 (377)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~ 215 (377)
..... -.-+++..-.-...+++- .+++.|+..++++++..+..
T Consensus 181 pa~f~---IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 181 PATFV---IESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred Ccccc---hhhhccccHhheeeeeec--cCceeeecCCCCcEEEEecc
Confidence 43321 000111111113444443 56777888788888888774
No 238
>KOG0263|consensus
Probab=22.88 E-value=9.2e+02 Score=25.53 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=82.1
Q ss_pred EEEEECCCCEEEEEEcCCCcEEE-EEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCCC
Q psy5792 189 KVDFHAAEDYIYWVDIDHGTISR-THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267 (377)
Q Consensus 189 ~l~~d~~~~~ly~sd~~~~~I~~-~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g~ 267 (377)
.+.|.+ .++ ||+.....+.-| ...+-.....++. ..++....+++.|.. +.-.|-+...++..-+....
T Consensus 498 dV~F~P-~Gy-YFatas~D~tArLWs~d~~~PlRifa-------ghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G 567 (707)
T KOG0263|consen 498 DVQFAP-RGY-YFATASHDQTARLWSTDHNKPLRIFA-------GHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTG 567 (707)
T ss_pred eEEecC-Cce-EEEecCCCceeeeeecccCCchhhhc-------ccccccceEEECCcc-cccccCCCCceEEEEEcCCC
Confidence 345554 344 444444332222 2333334444554 467788899999854 33345555667776665444
Q ss_pred eEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEecCCCC-eEEEEecCCCCceEEEEeCCCCEEEEEEeCCCCe
Q psy5792 268 YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK-QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV 346 (377)
Q Consensus 268 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ldG~~-~~~l~~~~~~~P~glalD~~~~~LYw~d~~~~~~ 346 (377)
...-+..+.-....++++.|.+.+|=-.+ ..+.|.--++.+.. ...+... -.....|++.. .+.+..+.. ..+.
T Consensus 568 ~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~-dg~vLasgg-~Dns 642 (707)
T KOG0263|consen 568 NSVRIFTGHKGPVTALAFSPCGRYLASGD--EDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSR-DGNVLASGG-ADNS 642 (707)
T ss_pred cEEEEecCCCCceEEEEEcCCCceEeecc--cCCcEEEEEcCCCcchhhhhcc-cCceeEEEEec-CCCEEEecC-CCCe
Confidence 43344455555568999999655554443 35677777776533 2233222 24455677753 455666666 5565
Q ss_pred EEEEEcc
Q psy5792 347 LESMDYS 353 (377)
Q Consensus 347 i~~~~~~ 353 (377)
|.--++.
T Consensus 643 V~lWD~~ 649 (707)
T KOG0263|consen 643 VRLWDLT 649 (707)
T ss_pred EEEEEch
Confidence 5554443
No 239
>KOG0646|consensus
Probab=21.23 E-value=8.3e+02 Score=24.34 Aligned_cols=154 Identities=13% Similarity=0.042 Sum_probs=77.4
Q ss_pred eEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEEcCC
Q psy5792 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266 (377)
Q Consensus 187 ~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~~~g 266 (377)
..+++-++. ++..++-...+.|+-..+..+..-.+.. ........|.+- .++..++|-...+.|.+-.+-.
T Consensus 84 v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~-------aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 84 VHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLS-------AHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred eeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHH-------hhccceeEEEEe-CCCcEEEecCCCccEEEEEEEe
Confidence 456666653 3333444346777777776443333333 344456777775 4677888888877776544311
Q ss_pred ------C-eEEEE--eeCCCCCceeEEEcC--CCCeEEEEecCCCCeEEEEecCCCCeEEEEec-CCCCceEEEEeCCCC
Q psy5792 267 ------Q-YRYVL--ISGGVDQPSALAVDP--ESGYLFWSESGKIPLIARAGLDGKKQTILAQE-IIMPIKDITLDRKNK 334 (377)
Q Consensus 267 ------~-~~~~l--~~~~~~~P~~iavdp--~~g~lywtd~g~~~~I~r~~ldG~~~~~l~~~-~~~~P~glalD~~~~ 334 (377)
. ....+ .....-....+.+++ .+.+||=+.....-+++ ++.... .|..- .-..+..+++|+.+.
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~w--dlS~g~--LLlti~fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLW--DLSLGV--LLLTITFPSSIKAVALDPAER 230 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEE--Eeccce--eeEEEecCCcceeEEEccccc
Confidence 1 00000 111111123444432 13344444321112222 222221 12111 124578999998877
Q ss_pred EEEEEEeCCCCeEEEEEccCC
Q psy5792 335 RVYWCYSVGSNVLESMDYSGG 355 (377)
Q Consensus 335 ~LYw~d~~~~~~i~~~~~~G~ 355 (377)
++|.--. .++|+-.++.+.
T Consensus 231 ~~yiGt~--~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 231 VVYIGTE--EGKIFQNLLFKL 249 (476)
T ss_pred EEEecCC--cceEEeeehhcC
Confidence 7777554 678888887654
No 240
>KOG0263|consensus
Probab=20.86 E-value=1e+03 Score=25.24 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCceEEEEEECCCCEEEEEEcCCCcEEEEEcCCCCcEEEEeccccCCCCCCCCcceEEEeccCCeEEEEcCCCCEEEEEE
Q psy5792 184 VSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVAR 263 (377)
Q Consensus 184 ~~~~~~l~~d~~~~~ly~sd~~~~~I~~~~~~G~~~~~i~~~~~~~~~~~~~~p~~iavD~~~~~lYwtd~~~~~I~~~~ 263 (377)
++....++|++..+++. +-.....++..+........++. ...+.+.+|++-+.++.| .+-...+.|..-+
T Consensus 535 lsDV~cv~FHPNs~Y~a-TGSsD~tVRlWDv~~G~~VRiF~-------GH~~~V~al~~Sp~Gr~L-aSg~ed~~I~iWD 605 (707)
T KOG0263|consen 535 LSDVDCVSFHPNSNYVA-TGSSDRTVRLWDVSTGNSVRIFT-------GHKGPVTALAFSPCGRYL-ASGDEDGLIKIWD 605 (707)
T ss_pred ccccceEEECCcccccc-cCCCCceEEEEEcCCCcEEEEec-------CCCCceEEEEEcCCCceE-eecccCCcEEEEE
Confidence 34456678887554443 32344566666664334445555 455668899999865544 4555567888888
Q ss_pred cCCCeEEEEeeCCCCCceeEEEcCCCCeEEEEecCCCCeEEEEe
Q psy5792 264 LTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAG 307 (377)
Q Consensus 264 ~~g~~~~~l~~~~~~~P~~iavdp~~g~lywtd~g~~~~I~r~~ 307 (377)
+.+...-....+.-.....|.+.. .|.+..+..+ ...|..-+
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~-DnsV~lWD 647 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGA-DNSVRLWD 647 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEec-CCCEEEecCC-CCeEEEEE
Confidence 877543322222345566777764 6677777654 34443333
No 241
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=20.28 E-value=2.2e+02 Score=17.22 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=19.5
Q ss_pred CeEEEEcC-----CCCEEEEEEcCCCeEEEEe
Q psy5792 247 QNIYWSDP-----KENVIEVARLTGQYRYVLI 273 (377)
Q Consensus 247 ~~lYwtd~-----~~~~I~~~~~~g~~~~~l~ 273 (377)
++||-+-. ..+.|.+++++|.. .+|.
T Consensus 2 g~lYGTT~~GG~~~~GTvf~~~~~g~~-t~L~ 32 (34)
T TIGR03803 2 GTLYGTTSGGGASGFGTLYRLSTAGGT-TVLH 32 (34)
T ss_pred CcEEEEcccCCCCCceeEEEEcCCCCe-EEEE
Confidence 57888754 35789999999988 5554
No 242
>PHA02713 hypothetical protein; Provisional
Probab=20.14 E-value=9.5e+02 Score=24.61 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=32.1
Q ss_pred CCeEEEEeCC------CCcEEEEEcCCc-EEEEEeCCCCCceEEEEEECCeEEEEcC
Q psy5792 27 GPFVYGVKTL------SHSLHYVNIEVK-VAKVVSMPDAAQVVAAVFYKGRIIYSDA 76 (377)
Q Consensus 27 ~~~ly~~d~~------~~~I~~~~~dG~-~~~i~~~~~~~~p~~lav~~~~ly~td~ 76 (377)
+++||++-.. ...+++.|+... -+.+-+......-+++++.+++||+.-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG 359 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECC
Confidence 5689998542 245778888777 5444222222233577889999999854
Done!