RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5792
(377 letters)
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 177 bits (450), Expect = 5e-50
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 4/174 (2%)
Query: 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246
+D A + IYW D+ I T D + + V + D + +AVDWI
Sbjct: 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIH 464
Query: 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306
NIYW+D + VA G R L +P A+ VDP G+++W++ G I +
Sbjct: 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 524
Query: 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
GL+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 525 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTI 577
Score = 86.8 bits (214), Expect = 1e-18
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 504 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 556
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 557 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 616
Query: 312 KQTILAQEIIMP--IKDITLDRKNKRVYWCYSVGSN 345
+LA+ ++ P + + + V WC +
Sbjct: 617 DVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLS 652
Score = 33.2 bits (75), Expect = 0.14
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSN-STVLRNNAGIS 101
GR+ + D+ +I SI+++G N T+L + ++
Sbjct: 549 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 585
Score = 30.2 bits (67), Expect = 1.3
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 46/160 (28%)
Query: 68 KGRIIYSDAND-GNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKV 126
G + ++D I+ L+G + L +++ I +
Sbjct: 507 HGFMYWTDWGTPAKIKKGGLNGVDIYSL-----VTENIQW-------------------- 541
Query: 127 QQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKNESKVTQVLGPLSKVS 185
P + +D +G L+ V+S I I N K +L +++
Sbjct: 542 -----P---NGIT--LDLLSGR----LYWVDSKLHSISSIDVNGGNRKT--ILEDEKRLA 585
Query: 186 LAAKVDFHAAEDYIYWVDIDHGTISRTHRD-GTGRENIIE 224
ED ++W DI + I +R G+ + E
Sbjct: 586 HP--FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAE 623
Score = 30.2 bits (67), Expect = 1.3
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 36 LSHSLHYVNIEVKVAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSINLDGSNSTVL 94
L + + + +++ + PD AV + IY +D+ G + + G L
Sbjct: 435 LDRAHGVSSYDTVISRDIQAPDGL----AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 490
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 177 bits (449), Expect = 1e-49
Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 4/179 (2%)
Query: 187 AAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246
+D A + IYW D+ I T D + + V + D D +AVDWI
Sbjct: 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG---LAVDWIH 482
Query: 247 QNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARA 306
NIYW+D + VA G R L +P A+ VDP G+++W++ G I +
Sbjct: 483 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 542
Query: 307 GLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
GL+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 543 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEK 600
Score = 87.2 bits (215), Expect = 8e-19
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 522 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 574
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634
Query: 312 KQTILAQEIIMP--IKDITLDRKNKRVYWCYSVGSN 345
+LA+ ++ P + + + V WC +
Sbjct: 635 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 670
Score = 32.9 bits (74), Expect = 0.17
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSN-STVLRNNAGIS 101
GR+ + D+ +I SI+++G N T+L + ++
Sbjct: 567 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 603
Score = 31.0 bits (69), Expect = 0.75
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 36 LSHSLHYVNIEVKVAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSINLDGSNSTVL 94
L + + + +++ + PD AV + IY +D+ G + + G L
Sbjct: 453 LDRAHGVSSYDTVISRDIQAPDGL----AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 508
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 166 bits (422), Expect = 6e-49
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 12/211 (5%)
Query: 146 AGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDID 205
AG + +L++ + D+ + + T V+G L AA VDF + IYW D+
Sbjct: 1 AGSAPLLLYA--NRRDLRLVDATNGKENATIVVGGLED---AAAVDFVFSHGLIYWSDVS 55
Query: 206 HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLT 265
I RT + T + V +G +P +A DW+ + +YW+D + N IEV+ L
Sbjct: 56 EEAIKRTEFNKTESVQNV--VVSGLLSP----DGLACDWLGEKLYWTDSETNRIEVSNLD 109
Query: 266 GQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIK 325
G R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+ I
Sbjct: 110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 169
Query: 326 DITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+TLD + +++YW + N + + G +
Sbjct: 170 GLTLDYEEQKLYWADA-KLNFIHKSNLDGTN 199
Score = 86.7 bits (214), Expect = 2e-19
Identities = 54/283 (19%), Positives = 104/283 (36%), Gaps = 31/283 (10%)
Query: 76 ANDGNIRSINLDGSNSTV------LRNNAGI-----SDFILFSVNSGYDIMGIKYNKNES 124
AN ++R ++ L + A + I +S S I ++NK ES
Sbjct: 10 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 69
Query: 125 KVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183
V+ L LA D+ + + + ++ + I + + KV
Sbjct: 70 VQNVVVSGLLSPDGLA--CDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 124
Query: 184 VSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242
++A + ++YW D + I R DG+ R I + + P + +
Sbjct: 125 RAIA----LDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSEIYWP----NGLTL 173
Query: 243 DWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302
D+ Q +YW+D K N I + L G R ++ G + P AL + L+W++ +
Sbjct: 174 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSI 231
Query: 303 IARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
+A G+ + +I P+ ++ + N
Sbjct: 232 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDN 274
Score = 45.1 bits (106), Expect = 2e-05
Identities = 39/224 (17%), Positives = 60/224 (26%), Gaps = 53/224 (23%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVL-RNNAGISDFILFSVNSGYDIMGIKYNK 121
A + G +Y +D+ I NLDGS VL I +SG+
Sbjct: 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWT----- 139
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
G I + G I
Sbjct: 140 -----------------------DWGEVPKIERAGMDGSSRFII--------------IN 162
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
S++ + E +YW D I +++ DGT R V+ P P A
Sbjct: 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR---QAVVKGSLPHP------FA 213
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV 285
+ +YW+D + I I + P +
Sbjct: 214 LTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 165 bits (420), Expect = 1e-48
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 11/206 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
++ F+ + +++ + +++E + + +D A + IYW D+ I
Sbjct: 3 YLFFT--NRHEVRKMTLDRSEYTS-----LIPNLRNVVALDTEVASNRIYWSDLSQRMIC 55
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
T D + + V + D + +AVDWI NIYW+D + VA G R
Sbjct: 56 STQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 112
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
L +P A+ VDP G+++W++ G I + GL+G L E I ITLD
Sbjct: 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGS 356
+ R+YW S + + S+D +GG+
Sbjct: 173 LLSGRLYWVDS-KLHSISSIDVNGGN 197
Score = 84.7 bits (209), Expect = 1e-18
Identities = 46/286 (16%), Positives = 91/286 (31%), Gaps = 32/286 (11%)
Query: 76 ANDGNIRSINLDGSNSTVLRNNAG---------ISDFILFSVNSGYDIMGIKYNKNESKV 126
N +R + LD S T L N S+ I +S S I + ++
Sbjct: 7 TNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 66
Query: 127 QQVLGPLSKV----SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLS 182
+ LA VD+ I I ++ + + + K
Sbjct: 67 SYDTVISRDIQAPDGLA--VDW---IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 183 KVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
++ ++YW D I + +G ++ V P I
Sbjct: 122 PRAIV----VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL---VTENIQWP----NGIT 170
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 301
+D ++ +YW D K + I + G R ++ ++ +FW++
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 302 LIARAGLDGKKQTILAQEIIMPIKDITLD--RKNKRVYWCYSVGSN 345
+ + L G +LA+ ++ P + + + V WC +
Sbjct: 231 IFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 276
Score = 34.3 bits (78), Expect = 0.049
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 17/170 (10%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVL-----RNNAGI----SDFILFSVNSGYD 113
AV + IY +D+ G + + G L I ++ + G
Sbjct: 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP 142
Query: 114 IMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESK 173
K N + ++ + +D +G L+ V+S + + N
Sbjct: 143 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG----RLYWVDSKLHSIS-SIDVNGGN 197
Query: 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENII 223
+L +++ + ED ++W DI + I +R N++
Sbjct: 198 RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 245
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 166 bits (421), Expect = 4e-48
Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 8/170 (4%)
Query: 191 DFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIY 250
DFH + ++W D+ I R + +G+ E ++ T ++ +AVDW+ +Y
Sbjct: 122 DFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGGLAVDWVHDKLY 174
Query: 251 WSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDG 310
W+D + IEVA L G +R VL+ +++P A+A+ P G ++W++ G P I + +DG
Sbjct: 175 WTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234
Query: 311 KKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ I+A + +T+D +R+YW + +V+E + G + +
Sbjct: 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDA-KHHVIERANLDGSHRKAV 283
Score = 86.7 bits (214), Expect = 5e-19
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
H E IYW D + I + DG+GR I +T P + +D+ + +YW
Sbjct: 210 HPMEGTIYWTDWGNTPRIEASSMDGSGRRII---ADTHLFWP----NGLTIDYAGRRMYW 262
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K +VIE A L G +R +IS G+ P A+ V L+W++ + + GK
Sbjct: 263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGK 320
Query: 312 KQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
Q I+ ++ P+ TL + + +N
Sbjct: 321 NQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNN 354
Score = 74.0 bits (181), Expect = 8e-15
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292
++ + + ++WSD + I A L G ++S G++ P LAVD L
Sbjct: 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL 173
Query: 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352
+W++SG I A LDG + +L + + + I L +YW + +E+
Sbjct: 174 YWTDSGT-SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232
Query: 353 SGGSKMQLKLSSNIK--NAL-LDRKS 375
G + + +++ N L +D
Sbjct: 233 DGSGRRII-ADTHLFWPNGLTIDYAG 257
Score = 34.4 bits (78), Expect = 0.060
Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 29/193 (15%)
Query: 44 NIEVKVAKVVSMPDAAQVVAAVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRNNA---- 98
N+E V+ + P AV + +Y +D+ I NLDG++ VL +
Sbjct: 149 NVEEVVSTGLESPGGL----AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKP 204
Query: 99 -GI-----SDFILFS-VNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDF 151
I I ++ + I + + S + + +D+
Sbjct: 205 RAIALHPMEGTIYWTDWGNTPRIE--ASSMDGSGRRIIADTHLFWPNGLTIDYAGR---- 258
Query: 152 ILFSVNSGYD-IMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
++ V++ + I + S V+ A V ED +YW D +I+
Sbjct: 259 RMYWVDAKHHVIERANL--DGSHRKAVISQGLPHPFAITVF----EDSLYWTDWHTKSIN 312
Query: 211 RTHRDGTGRENII 223
++ + II
Sbjct: 313 SANKFTGKNQEII 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 171 bits (433), Expect = 5e-48
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 14/220 (6%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
F+LFS DI I N + V PL+ V A+ +DF ++ IYW DI TIS
Sbjct: 8 FLLFS--RRADIRRISLETNNNNVAI---PLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
R +G+ E+++E G P +AVDW+ +N+YW+D N IEV++L GQ+R
Sbjct: 63 RAFMNGSALEHVVE---FGLDYP----EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
VL+ +D P ALA+DP G+++W+E G P I RA +DG ++T L + +T+D
Sbjct: 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRAN-GLTID 174
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSNIKNAL 370
+R+YW +N++ES + G ++ + L
Sbjct: 175 YAKRRLYWTDL-DTNLIESSNMLGLNREVIADDLPHPFGL 213
Score = 163 bits (413), Expect = 3e-45
Identities = 61/307 (19%), Positives = 126/307 (41%), Gaps = 13/307 (4%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSN--STVLRNNAGISDFILFSVNSGYDIMGIKYNKNE 123
Y+ I ++D + +I N + + + + D ++F + +
Sbjct: 215 QYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGH 274
Query: 124 SKVQQVLGPLSKVSLAAKV------DFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQV 177
+ P+ D + + I + ++ +S +
Sbjct: 275 CSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQS--PDI 332
Query: 178 LGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237
+ P+ + +D+ + +YW+D I + DG+ ++ Q
Sbjct: 333 ILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVV-SSVPSQNLEIQP 391
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 297
D+++D ++ IYW+ NVI V RL G+ V++ G D+P A+ V+PE GY++++
Sbjct: 392 YDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNL 451
Query: 298 GKI-PLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+ P I RA LDG ++ +L + + LD + +++W S +ES D SG +
Sbjct: 452 QERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADS-DLRRIESSDLSGAN 510
Query: 357 KMQLKLS 363
++ L+ S
Sbjct: 511 RIVLEDS 517
Score = 82.5 bits (203), Expect = 3e-17
Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 50/272 (18%)
Query: 59 AQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIK 118
+ + ++ + D+ IR DGS + ++ S N +
Sbjct: 342 VRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQ------NLEIQPYDLS 395
Query: 119 YNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVL 178
+ S +I ++ + I + + V +
Sbjct: 396 IDI--------------------------YSRYIYWTCEATNVINVTRLDGRSVGVV-LK 428
Query: 179 GPLSKV-SLAAKVDFHAAEDYIYWVDID--HGTISRTHRDGTGRENIIEYVETGDPTPVD 235
G + ++ + + Y+Y+ ++ I R DGT RE + +G P+
Sbjct: 429 GEQDRPRAVV----VNPEKGYMYFTNLQERSPKIERAALDGTEREVL---FFSGLSKPIA 481
Query: 236 QFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWS 295
+A+D ++W+D IE + L+G R VL + QP L V +L+W
Sbjct: 482 ----LALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVF--ENWLYWI 535
Query: 296 ESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327
+ + +I + + G++ Q I + DI
Sbjct: 536 DKQQ-QMIEKIDMTGREGRTKVQARIAQLSDI 566
Score = 52.9 bits (126), Expect = 9e-08
Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 38/278 (13%)
Query: 35 TLSHSLHYVNIEVKVAKVVSMPDAAQVVAAV---FYKGRIIYSDANDGNIRSINLDGSNS 91
+ + +++E V + +A+ RI ++D + I ++GS
Sbjct: 12 SRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL 71
Query: 92 TVLRNN-----AGIS-DFI---LFSVNSGYD-IMGIKYNKNESKV---QQVLGPLSKVSL 138
+ G++ D++ L+ ++G + I K + +V + + P +L
Sbjct: 72 EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP---RAL 128
Query: 139 AAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDY 198
A +D G I + +E + V A + A+
Sbjct: 129 A--LDPAEGF--MYWTEWGGKPKIDRAAMDGSERTT-----LVPNVGRANGLTIDYAKRR 179
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258
+YW D+D I ++ G RE I + + + IYW+D
Sbjct: 180 LYWTDLDTNLIESSNMLGLNREVIADDLP--------HPFGLTQY--QDYIYWTDWSRRS 229
Query: 259 IEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE 296
IE A T +I G +D + V S W+E
Sbjct: 230 IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNE 267
Score = 30.9 bits (69), Expect = 0.76
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 39 SLHYVNIEVKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNA 98
+L EV +S P A +A G++ ++D++ I S +L G+N VL ++
Sbjct: 462 ALDGTEREVLFFSGLSKPIA---LALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSN 518
Query: 99 GISDFIL 105
+ L
Sbjct: 519 ILQPVGL 525
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 161 bits (409), Expect = 2e-47
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 12/212 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK-VSLAAKVDFHAAEDYIYWVDIDHGTI 209
+LF+ I + +N K T+ L + + F + +YW DI +I
Sbjct: 3 HLLFA--QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 210 SRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR 269
R G II +P IA+D + + I+W+D + + IEVA++ G R
Sbjct: 61 GRASLHGGEPTTIIR---QDLGSP----EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113
Query: 270 YVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDIT 328
VL G+ P + DP G L+W++ + P I + +DG + ILAQ+ + +T
Sbjct: 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT 173
Query: 329 LDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
D + ++ W + G++ E ++ + + ++
Sbjct: 174 FDAFSSQLCWVDA-GTHRAECLNPAQPGRRKV 204
Score = 74.9 bits (184), Expect = 1e-15
Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 62/303 (20%)
Query: 39 SLHYVNIEVKVAKVVSMPDAAQVVA-AVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRN 96
L ++ AK A ++ A +++Y +D ++ +I +L G T +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI-- 73
Query: 97 NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSV 156
+ + G +A +D + I ++
Sbjct: 74 -----------IRQD--------------LGSPEG------IA--LDH---LGRTIFWTD 97
Query: 157 NSGYDIMGIKYNKNESKV---TQVLGPLSKVSLAAKVDFHAAEDYIYWVDI--DHGTISR 211
+ I K + + +V T ++ P + +YW D D+ I
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRG-------IVTDPVRGNLYWTDWNRDNPKIET 150
Query: 212 THRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYV 271
+H DGT R + + P + D + + W D + E R
Sbjct: 151 SHMDGTNRRIL---AQDNLGLP----NGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK 203
Query: 272 LISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDR 331
++ G+ P A+ L++++ +IA K+ + IT+
Sbjct: 204 VLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260
Query: 332 KNK 334
Sbjct: 261 SQC 263
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 166 bits (422), Expect = 2e-46
Identities = 71/333 (21%), Positives = 139/333 (41%), Gaps = 17/333 (5%)
Query: 37 SHSLHYVNIEVKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSIN-LDGSNSTVLR 95
+ +H N++ + V A ++ + ++D + +I + N G +
Sbjct: 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251
Query: 96 NNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ--VLGPLSKVSLAAKVDFHAGISDFIL 153
++ I + ++ P+ A + +
Sbjct: 252 SDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT 311
Query: 154 FSVNSGYDIMG------IKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHG 207
+ ++ + + + T ++ L + A +D+ E YIYW D +
Sbjct: 312 CKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371
Query: 208 TISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ 267
I R+ DG+G + ++ + IAVDW+A+N+YW+D + IEV RL G
Sbjct: 372 AIRRSFIDGSGSQFVVT-------AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424
Query: 268 YRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDI 327
R +LIS +++P A+ +DP GY++W++ G+IP I RA LDG + +L + +
Sbjct: 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGL 484
Query: 328 TLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
LD ++YW + ++ +E M+ G + L
Sbjct: 485 ALDYDEGKIYWGDA-KTDKIEVMNTDGTGRRVL 516
Score = 161 bits (409), Expect = 1e-44
Identities = 62/210 (29%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 147 GISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDH 206
+ +L++ + D+ + + T V+G L + VDF + IYW D+
Sbjct: 7 HHAPLLLYA--NRRDLRLVDATNGKENATIVVGGLEDAAA---VDFVFSHGLIYWSDVSE 61
Query: 207 GTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTG 266
I RT + T + V +G +P +A DW+ + +YW+D + N IEV+ L G
Sbjct: 62 EAIKRTEFNKTESVQNV--VVSGLLSP----DGLACDWLGEKLYWTDSETNRIEVSNLDG 115
Query: 267 QYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKD 326
R VL +DQP A+A+DP SG+++W++ G++P I RAG+DG + I+ I
Sbjct: 116 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175
Query: 327 ITLDRKNKRVYWCYSVGSNVLESMDYSGGS 356
+TLD + +++YW + N + + G +
Sbjct: 176 LTLDYEEQKLYWADA-KLNFIHKSNLDGTN 204
Score = 78.7 bits (193), Expect = 4e-16
Identities = 47/279 (16%), Positives = 95/279 (34%), Gaps = 32/279 (11%)
Query: 73 YSDANDGNIRSINLDGSNSTV-------LRNNAGI-----SDFILFSVNSGYDIMGIKYN 120
A ++R I+LD + T +R+ I +I ++ + I +
Sbjct: 320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID 379
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180
+ S+ +A VD+ ++ + ++ I + N K+
Sbjct: 380 GSGSQFVVTAQIAHPDGIA--VDW---VARNLYWTDTGTDRIEVTRLNGTMRKILISEDL 434
Query: 181 LSKVSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239
++ Y+YW D + I R DG+ R + V T P
Sbjct: 435 EEPRAIV----LDPMVGYMYWTDWGEIPKIERAALDGSDRVVL---VNTSLGWP----NG 483
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299
+A+D+ IYW D K + IEV G R VL+ + + Y++W++ +
Sbjct: 484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQR 541
Query: 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYW 338
I R ++ ++ ++ + +
Sbjct: 542 -RSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSN 579
Score = 74.5 bits (182), Expect = 9e-15
Identities = 56/280 (20%), Positives = 104/280 (37%), Gaps = 33/280 (11%)
Query: 76 ANDGNIRSINLDGSNSTV------LRNNAGI-----SDFILFSVNSGYDIMGIKYNKNES 124
AN ++R ++ L + A + I +S S I ++NK ES
Sbjct: 15 ANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES 74
Query: 125 KVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSK 183
V+ L LA D+ + + + ++ + I + + KV
Sbjct: 75 VQNVVVSGLLSPDGLA--CDW---LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 129
Query: 184 VSLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAV 242
++A + ++YW D + I R DG+ R I + + P + +
Sbjct: 130 RAIA----LDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSEIYWP----NGLTL 178
Query: 243 DWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPL 302
D+ Q +YW+D K N I + L G R ++ G + P AL + L+W++ +
Sbjct: 179 DYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSI 236
Query: 303 IARAGLDGKKQTILAQEI--IMPIKDITLDRKNKRVYWCY 340
+A G+ + +I M I + R+ C
Sbjct: 237 LACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCG 276
Score = 43.7 bits (102), Expect = 7e-05
Identities = 46/320 (14%), Positives = 93/320 (29%), Gaps = 31/320 (9%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVL-----RNNAGI-----SDFILFS-VNSG 111
A + G +Y +D+ I NLDGS VL I S F+ ++
Sbjct: 90 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV 149
Query: 112 YDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKN 170
I + + S ++ +D+ + L+ ++ + I +
Sbjct: 150 PKIE--RAGMDGSSRFIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGT 203
Query: 171 ESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD 230
+ +L ED +YW D +I ++ TG + +
Sbjct: 204 NRQAVVKGSLPHPFALT------LFEDILYWTDWSTHSILACNKY-TGEGLREIHSDIFS 256
Query: 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDP--E 288
P + F+ + + + + + GV
Sbjct: 257 PMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGA 316
Query: 289 SGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLE 348
+ L + + I+ D + ++I I I D +YW +
Sbjct: 317 TELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAI-AIDYDPVEGYIYWT-DDEVRAIR 374
Query: 349 SMDYSGGSKMQLKLSSNIKN 368
GS Q +++ I +
Sbjct: 375 RSFI-DGSGSQFVVTAQIAH 393
Score = 27.5 bits (60), Expect = 9.1
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 44 NIEVKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDF 103
+ V V + P+ +A + +G+I + DA I +N DG+ VL + F
Sbjct: 469 DRVVLVNTSLGWPNG---LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIF 525
Query: 104 IL 105
Sbjct: 526 GF 527
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 161 bits (409), Expect = 4e-46
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 189 KVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQN 248
+D A + IYW D+ I T D + + V + D D +AVDWI N
Sbjct: 116 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD---GLAVDWIHSN 172
Query: 249 IYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGL 308
IYW+D + VA G R L +P A+ VDP G+++W++ G I + GL
Sbjct: 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232
Query: 309 DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQLKLSSN 365
+G L E I ITLD + R+YW S + + S+D +GG++ +
Sbjct: 233 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEK 288
Score = 88.4 bits (218), Expect = 1e-19
Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 10/156 (6%)
Query: 193 HAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++YW D I + +G +++ P I +D ++ +YW
Sbjct: 210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQWPNG------ITLDLLSGRLYW 262
Query: 252 SDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
D K + I + G R ++ ++ +FW++ + + L G
Sbjct: 263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322
Query: 312 KQTILAQEI--IMPIKDITLDRKNKRVYWCYSVGSN 345
+LA+ + + + + V WC +
Sbjct: 323 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLS 358
Score = 34.8 bits (79), Expect = 0.041
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSN-STVLRNNAGISDFILFSVNSGY 112
GR+ + D+ +I SI+++G N T+L + ++ +V
Sbjct: 255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 302
Score = 31.4 bits (70), Expect = 0.56
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 14/170 (8%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKN 122
AV + IY +D+ G + + G L S V+ + M
Sbjct: 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGT 223
Query: 123 ESKVQQVL--GPLSKVSLAAKVDFHAGIS-DFI---LFSVNSGYD-IMGIKYNKNESKVT 175
+K+++ G + + + GI+ D + L+ V+S I I N
Sbjct: 224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV--NGGNRK 281
Query: 176 QVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR-DGTGRENIIE 224
+L +++ + ED ++W DI + I +R G+ + E
Sbjct: 282 TILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 154 bits (389), Expect = 9e-44
Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 8/181 (4%)
Query: 180 PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD 239
L+ + A +DFH + ++W D+ I R + +G+ E ++ T ++
Sbjct: 68 LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-------TGLESPGG 120
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299
+AVDW+ +YW+D + IEVA L G +R VL+ +++P A+A+ P G ++W++ G
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 300 IPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQ 359
P I + +DG + I+A + +T+D +R+YW + +V+E + G +
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA-KHHVIERANLDGSHRKA 239
Query: 360 L 360
+
Sbjct: 240 V 240
Score = 87.2 bits (215), Expect = 2e-19
Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 9/168 (5%)
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252
A + + I + + ++ +E + + ++WS
Sbjct: 39 KALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENA--------IALDFHHRRELVFWS 90
Query: 253 DPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKK 312
D + I A L G ++S G++ P LAVD L+W++SG I A LDG
Sbjct: 91 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT-SRIEVANLDGAH 149
Query: 313 QTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ +L + + + I L +YW + +E+ G + +
Sbjct: 150 RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 197
Score = 76.1 bits (186), Expect = 2e-15
Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 32/289 (11%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAG--------ISDFILFSVNSGYDIMGIKYN 120
+ AN +IR + S T+L NN ++F + D + + N
Sbjct: 43 PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRIL-RAN 101
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKNESKVTQVLG 179
N S V++V+ + VD+ L+ +SG I + KV +
Sbjct: 102 LNGSNVEEVVSTGLESPGGLAVDWVHDK----LYWTDSGTSRIEVANLDGAHRKVL-LWQ 156
Query: 180 PLSKV-SLAAKVDFHAAEDYIYWVDI-DHGTISRTHRDGTGRENIIEYVETGDPTPVDQF 237
L K ++A H E IYW D + I + DG+GR I + T +
Sbjct: 157 SLEKPRAIA----LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-------THLFWP 205
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSES 297
+ +D+ + +YW D K +VIE A L G +R +IS G+ P A+ V L+W++
Sbjct: 206 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDW 263
Query: 298 GKIPLIARAGL-DGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSN 345
I A GK Q I+ ++ P+ TL + + +N
Sbjct: 264 HT-KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNN 311
Score = 46.0 bits (108), Expect = 1e-05
Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 54/241 (22%)
Query: 64 AVFYKGRIIY-SDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKN 122
AV + +Y +D+ I NLDG++ VL
Sbjct: 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL---------------------------- 153
Query: 123 ESKVQQVLGPLSKV-SLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
+ L K ++A + G ++ + G + + S +
Sbjct: 154 ------LWQSLEKPRAIA--LHPMEG----TIYWTDWGNTPRIEASSMDGSGRRIIADTH 201
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
+D+ +YWVD H I R + DG+ R+ +I G P P A
Sbjct: 202 LFWPNGLTIDYA--GRRMYWVDAKHHVIERANLDGSHRKAVI---SQGLPHP------FA 250
Query: 242 VDWIAQNIYWSDPKENVIEVA-RLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300
+ ++YW+D I A + TG+ + ++ + + P+ + G
Sbjct: 251 ITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDN 310
Query: 301 P 301
Sbjct: 311 N 311
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 75.5 bits (185), Expect = 2e-15
Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 64 AVFYKGRIIYSDANDGN-IRSINLDGSNSTVLRNNAGIS-----DFILFSVNSGYDIMGI 117
G + +S+ ND + ++N+DGSN L N+ + +++ + N+ I
Sbjct: 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 118 KY---NKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGI-KYNKNESK 173
+ ++N + G S V + + I ++I + + + + +
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE 140
Query: 174 VTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTP 233
++ + ++ Y Y+ + +G + R + P
Sbjct: 141 KKKIKNHYL-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD-CNCYKPVV 192
Query: 234 VDQFTDIAVDWIAQNIYWSD-PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYL 292
+D N+Y+ D ++N I + VL ++ + +
Sbjct: 193 LDD----------TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLI 237
Query: 293 FWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYSVGSNVLESMDY 352
F+ G P + DG LA+ +I + ++ VY+ SN
Sbjct: 238 FYQRGGDNPALCVVKNDGTGFKELAKG---EFCNINVT--SQYVYFTDF-VSNKEYCTST 291
Query: 353 SGGSKMQL 360
++
Sbjct: 292 QNPDTIKA 299
Score = 42.8 bits (100), Expect = 1e-04
Identities = 15/166 (9%), Positives = 42/166 (25%), Gaps = 27/166 (16%)
Query: 67 YKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILF-------SVNSGYDIMGIKY 119
Y++ +G + + + + + +L VN I+
Sbjct: 155 SDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRDNAIV--HV 212
Query: 120 NKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYD-IMGIKYNKNESKVTQVL 178
N N + ++ + I + + +K + K
Sbjct: 213 NINNPNPVVLTEA--------NIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFK----- 259
Query: 179 GPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224
+++ + + Y+Y+ D T ++
Sbjct: 260 ----ELAKGEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 46.9 bits (112), Expect = 4e-06
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ +++V+I I R G E PTP + I I++++
Sbjct: 196 GNDGALWFVEIMGNKIGRITTTGE-------ISEYDIPTPNARPHAITAG-KNSEIWFTE 247
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKI 300
N I + + +P + G ++++ KI
Sbjct: 248 WGANQIGRITNDNTIQEYQLQTENAEPHGITFGK-DGSVWFALKCKI 293
Score = 42.7 bits (101), Expect = 9e-05
Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ + +++ IS + G E PTP + + V +I++++
Sbjct: 28 SEDGKVWFTQHKANKISSLDQSGR-------IKEFEVPTPDAKVMCLIVS-SLGDIWFTE 79
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 313
N I G + + P + +G +++++ I + DG
Sbjct: 80 NGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNG-DRIGKLTADGTIY 137
Query: 314 TILAQEIIMPIKDITLDRKNKRVYWCYSVGSNV 346
ITL N +++ + +++
Sbjct: 138 EYDLPNKGSYPAFITLGSDN-ALWFTENQNNSI 169
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
I++ ++ I + DGT E P I + +++++
Sbjct: 113 LNGDIWFTQLNGDRIGKLTADGT-------IYEYDLPNKGSYPAFITLGS-DNALWFTEN 164
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
+ N I TG+ + P + G L++ E
Sbjct: 165 QNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM 207
Score = 37.7 bits (88), Expect = 0.004
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+++ +++ + + +I R G E PT I +++ +
Sbjct: 155 SDNALWFTENQNNSIGRITNTGK-------LEEYPLPTNAAAPVGITSGN-DGALWFVEI 206
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I TG+ I +P A+ ++++E G
Sbjct: 207 MGNKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWG 249
Score = 34.6 bits (80), Expect = 0.039
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 231 PTPVDQFTDIAVDWIAQ-NIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPES 289
P I ++++ K N I +G+ + + + L V
Sbjct: 16 SIPDSGPYGITSS--EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-L 72
Query: 290 GYLFWSESG 298
G ++++E+G
Sbjct: 73 GDIWFTENG 81
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 5e-06
Identities = 56/355 (15%), Positives = 112/355 (31%), Gaps = 113/355 (31%)
Query: 13 PSFGAVASTLKPQSGPFVYGVKTLSHSLHYVNI-----------------------EVKV 49
P + S P S P + GV L+H YV +
Sbjct: 226 PDKDYLLSI--PISCPLI-GVIQLAH---YVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 50 AKVVSMPD--------AAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGIS 101
A ++ D + + +F+ G Y + ++ L+ S L NN G+
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS----LENNEGVP 335
Query: 102 DFILFSVNSGYDIMGIKYNKNESKVQQV---LGPLSKVSLAAKVDFHAGISDFI------ 152
+L S++ + + + V + L +V ++ G + +
Sbjct: 336 SPML-SIS------NLTQEQVQDYVNKTNSHLPAGKQVEIS----LVNGAKNLVVSGPPQ 384
Query: 153 -LFSVN---------SGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFH-----AAED 197
L+ +N SG D I +++ + K + P++ FH A D
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA-------SPFHSHLLVPASD 437
Query: 198 YIYWVDIDHGTISRTHRD--------GTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249
I D+ +S +D G ++ + VD + V W
Sbjct: 438 LIN-KDLVKNNVSFNAKDIQIPVYDTFDG-SDLRVLSGSISERIVDCIIRLPVKWETTT- 494
Query: 250 YWSDPKENVIE--------VARLTGQYR-----YVLISGGVDQPSALAVDPESGY 291
++++ + LT + + V+++G +D D + G+
Sbjct: 495 --QFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP----DDDYGF 543
Score = 38.9 bits (90), Expect = 0.003
Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 58/159 (36%)
Query: 38 HSLHYVNIE----VKVAKVVSMPDAAQVVAAVFYKGRIIYSDANDGNIRSINLDGSNSTV 93
HSL E +A V+S+ +V VFY+G + V
Sbjct: 1762 HSLG----EYAALASLADVMSIESLVEV---VFYRGMTM-----------------QVAV 1797
Query: 94 LRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFIL 153
R+ G S++ + ++N G ++ +Q V V+ + +++
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASF----SQEALQYV------------VERVGKRTGWLV 1841
Query: 154 FSVNSGYDIMGIKYNKNESKVTQVL--GPLSKVSLAAKV 190
VN YN + Q + G L + V
Sbjct: 1842 EIVN---------YN---VENQQYVAAGDLRALDTVTNV 1868
Score = 30.8 bits (69), Expect = 0.91
Identities = 55/355 (15%), Positives = 95/355 (26%), Gaps = 145/355 (40%)
Query: 28 PFVYGVKTLSHSLHYVNIEVKVAKVVSMPD----AAQVVAAVFYKGRIIYSD--ANDGNI 81
P TLSH ++E V+ +P A + F K ++ A D
Sbjct: 8 PL-----TLSHG----SLEH----VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 82 RS-INL----------------DGSNSTVLRNNAGISDF---ILFSVNSGYDI------M 115
+ L G VL +++F L G DI +
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYL----EGNDIHALAAKL 108
Query: 116 GIKYNKNESKVQQVL-----------GPLSKVS----LAAKVDFHAGISDFILF---SVN 157
+ + K ++++ P K S A + +A + +F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNT 166
Query: 158 SGY-----DIMGIKYNKNESKV-------TQVLGPLSKVSLAAKVDFHAAEDYIYWVDID 205
Y D+ Y V + L L + +L A+ F + + W
Sbjct: 167 DDYFEELRDL----YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---- 218
Query: 206 HGTISRTHRDGTGRENIIEYVETGDPTPVDQFTD-IAVDW------------IAQNIYWS 252
+E TP + I + + +
Sbjct: 219 --------------------LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 253 DPKENVIEVARLTGQYRYVLISGGVDQPSALAV----DPES---------GYLFW 294
P E + TG S G+ +A+A+ ES LF+
Sbjct: 259 TPGELRSYLKGATG------HSQGL--VTAVAIAETDSWESFFVSVRKAITVLFF 305
Score = 28.9 bits (64), Expect = 3.5
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 22/95 (23%)
Query: 235 DQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQ-----YRYVLISGGVD-QPSALAVDPE 288
D + +I ++P I G+ Y ++ VD + + E
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 289 -----SGYLFWSESGKIPLIARAGLDGKKQTILAQ 318
+ Y F SE G + T Q
Sbjct: 1710 INEHSTSYTFRSEKGLL-----------SATQFTQ 1733
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 44.6 bits (106), Expect = 2e-05
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+ + ++ IS + DG E PTP + + + +++++
Sbjct: 23 SDKGKVWITQHKANMISCINLDGK-------ITEYPLPTPDAKVMCLTIS-SDGEVWFTE 74
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I G + + P + P +G ++++E
Sbjct: 75 NAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMN 118
Score = 43.5 bits (103), Expect = 6e-05
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+++ +++ + + I R G E PTP I +++ +
Sbjct: 150 SDNALWFTENQNNAIGRITESGD-------ITEFKIPTPASGPVGITKG-NDDALWFVEI 201
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I +G+ I +P A+ L+++E G
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITAGAG-IDLWFTEWG 244
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+D +++V+I I R G E PTP + I ++++++
Sbjct: 192 NDDALWFVEIIGNKIGRITTSGE-------ITEFKIPTPNARPHAITAG-AGIDLWFTEW 243
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDP 287
N I I +P + D
Sbjct: 244 GANKIGRLTSNNIIEEYPIQIKSAEPHGICFDG 276
Score = 40.4 bits (95), Expect = 5e-04
Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 194 AAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSD 253
+++ +++ + I R + G E P P I +I++++
Sbjct: 65 SSDGEVWFTENAANKIGRITKKGI-------IKEYTLPNPDSAPYGITEGP-NGDIWFTE 116
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N I G+ R + PS + + L+++E+
Sbjct: 117 MNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ 160
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 42.8 bits (100), Expect = 1e-04
Identities = 37/273 (13%), Positives = 74/273 (27%), Gaps = 45/273 (16%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128
+Y R I+ + + + + I ++ + I+ N N+
Sbjct: 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208
Query: 129 VLGPLSKVSLAAKVDFHAGISDFILFSVN------SGYDIMGIKYNKNESKVTQVLGPLS 182
+L S + ++ + +N S +Y+ + T L +
Sbjct: 209 ILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQ 267
Query: 183 KVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDP----------- 231
+ FH + +Y Y V ++ I R+ D + Y+ G
Sbjct: 268 DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK 327
Query: 232 ----------TPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL------ISG 275
T V + Y+ D + + I + G+ SG
Sbjct: 328 KARMHAPRQGTFVKNPAYKGSS-DEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSG 386
Query: 276 GVD----------QPSALAVDPESGYLFWSESG 298
D P + D E F +
Sbjct: 387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 41.9 bits (98), Expect = 2e-04
Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 23/229 (10%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAGIS-------DFILFSVNSGYDIMGIKYNK 121
G I ++ G I SI DG+ +S ++ + + I + K
Sbjct: 43 GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
++ V+ +L + L L + + I I + + + P+
Sbjct: 103 SDGTVETLLTLPDAIFLNGITPLSDTQ---YLTADSYRGAIWLIDVVQPSGSIW-LEHPM 158
Query: 182 SKVSLAAKVDF-----HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQ 236
S + V +++Y + + + R D T + E + T +D
Sbjct: 159 LARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNID- 215
Query: 237 FTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALA 284
D A D + N+Y + N + + GV +A+A
Sbjct: 216 --DFAFD-VEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVA 261
Score = 32.2 bits (73), Expect = 0.26
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 233 PVDQFT-DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGY 291
PV+ F ++A I+ ++ + E+ +T + + + S LA G
Sbjct: 29 PVNTFLENLASAP-DGTIFVTNHEVG--EIVSITPDGNQQIHATVEGKVSGLAFTSN-GD 84
Query: 292 LF--WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVY 337
L + IP+++ DG +T+L + + IT +
Sbjct: 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYL 131
Score = 28.8 bits (64), Expect = 3.1
Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 19/125 (15%)
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVD-----WIAQNIYWSD 253
I+ + + G I DG + T + + +A W+
Sbjct: 45 IFVTNHEVGEIVSITPDGN-----QQIHATVEGKV----SGLAFTSNGDLVAT---GWNA 92
Query: 254 PKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQ 313
V+ + + G +L + + + ++S + I +
Sbjct: 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYR-GAIWLIDVVQPSG 150
Query: 314 TILAQ 318
+I +
Sbjct: 151 SIWLE 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 6e-04
Identities = 50/427 (11%), Positives = 98/427 (22%), Gaps = 147/427 (34%)
Query: 22 LKPQSGPFVYGV----KTLSHSLHYVNIEVKVAKVVS-------MPDAAQVVAAVFYKGR 70
L+P + GV KT V M +F+
Sbjct: 147 LRPAKNVLIDGVLGSGKT-----------WVALDVCLSYKVQCKMDFK------IFW--- 186
Query: 71 IIYSDANDGNIRSIN--LDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQ 128
N N S L+ + + + + S N I I+ +
Sbjct: 187 -----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 129 -------VLGPLSKVSLAAKVDFH---------AGISDFILFSVNSGYDIMGIK--YNKN 170
VL + + ++DF+ + + + +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 171 ESK--VTQVLG--------------PLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHR 214
E K + + L P ++S+ A+ + W ++ ++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTTI-- 358
Query: 215 DGTGRENIIEYVETGDPTPVDQFTDIAV---D-WIAQN---IYWSDPKENVIEV------ 261
E+ + +E + F ++V I + W D ++ + V
Sbjct: 359 ----IESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 262 ----------------------------------ARLTGQYRYVLISGGVDQPSALAVDP 287
+ Y I D L
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN---IPKTFD-SDDLIPPY 468
Query: 288 ESGYLFW---------SESGKIPLIARAGLD-----GK-KQTILAQEIIMPIKDITLDRK 332
Y + ++ L LD K + A I + K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 333 NKRVYWC 339
+ Y C
Sbjct: 529 FYKPYIC 535
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 35.3 bits (82), Expect = 0.025
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDP 254
+Y D ++ ++ G+ + ++ + P +AVD +Y +D
Sbjct: 76 GAGTVYVTDFNNRVVTLA--AGSNNQTVLPFDGLNYPE------GLAVDT-QGAVYVADR 126
Query: 255 KENVIEVARLTGQYRYVLISGGVDQPSALAVDPE 288
N + + + VL G++ P +AVD
Sbjct: 127 GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS 160
Score = 34.1 bits (79), Expect = 0.059
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLF 293
IAVD A +Y ++ N + VL G++ P A+AVD ++
Sbjct: 195 WGIAVD-EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVY 248
Score = 28.4 bits (64), Expect = 3.5
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 232 TPVDQF---TDIAVDWIAQNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPSALAVDP 287
T +D + +AVD A N+Y + + VL G+ QP LAVD
Sbjct: 18 TGIDFRLSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG 76
Query: 288 ESGYLFWSESG 298
+G ++ ++
Sbjct: 77 -AGTVYVTDFN 86
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 34.7 bits (79), Expect = 0.038
Identities = 18/124 (14%), Positives = 42/124 (33%), Gaps = 20/124 (16%)
Query: 192 FHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYW 251
++ + +Y VD + G + + D P + VD +Y+
Sbjct: 87 YNLQNNQLYIVDCYYHLSVVGSEGGH----ATQLATSVDGVPFKWLYAVTVDQRTGIVYF 142
Query: 252 SDP--------KENVIEVARLTGQ-YRY-------VLISGGVDQPSALAVDPESGYLFWS 295
+D + +++ + TG+ +Y L+ + P V +S ++ +
Sbjct: 143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVA 202
Query: 296 ESGK 299
E
Sbjct: 203 EFLS 206
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 30.5 bits (68), Expect = 0.69
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258
IY V+ + R NI + + VD + ++ + V
Sbjct: 105 IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIV 164
Query: 259 IEVAR 263
+ AR
Sbjct: 165 VRNAR 169
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 30.8 bits (70), Expect = 0.73
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 192 FHAAEDYIYWVDIDHGTISRTHRDGT 217
+ A + + D+ DG
Sbjct: 35 YVPARSAVIFSDVRQNRTWAWSDDGQ 60
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS;
2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Length = 211
Score = 30.2 bits (68), Expect = 0.94
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 6/53 (11%)
Query: 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240
F I + + T+ + + VE DPT + ++
Sbjct: 126 IPGGFLDDAQVIQFFTYQYETVGQRIHQ------RVGDVEKVDPTTANLLQEV 172
>2yw6_A DNA protection during starvation protein; DNA-binding protein,
quarternary assembly, ferroxidation, oxidoreductase;
HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1
PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Length = 183
Score = 29.7 bits (67), Expect = 0.99
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240
V+ + ++ +D+ + + R IE +E D D
Sbjct: 95 YSVERDTVQAHLAALDLVYNGVIEDTRK------SIEKLEDLDLVSQDLLIAH 141
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 29.6 bits (66), Expect = 2.2
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 268 YRYVLISGGVDQPSALAVDPE-SGYLFWSE-SGKIPLIARAGLDGKKQTI-LAQEIIMPI 324
+ + G+ QP + S LF E G + ++ G K+ + + + + I
Sbjct: 4 FCIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGI 63
Query: 325 K--------DITLD---RKNKRVYWCYSVGSN 345
K + +KN ++Y Y+
Sbjct: 64 KGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 28.9 bits (65), Expect = 2.3
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGT 217
A+ + W D+ + DGT
Sbjct: 53 WEAQRTLVWSDLVGRRVLGWREDGT 77
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 29.2 bits (65), Expect = 2.4
Identities = 26/209 (12%), Positives = 53/209 (25%), Gaps = 16/209 (7%)
Query: 64 AVFYKGRIIYSDANDGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNE 123
A ++ +D +R I++D + T + + +G +
Sbjct: 137 AAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTV 196
Query: 124 SKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMG-----IKYNKNESKVTQVL 178
+ G F I L + ++N +VT +
Sbjct: 197 YVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIK 256
Query: 179 GPLSKVSLAAKVD----FHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGD---P 231
SL ++ + Y D + ++ + DG +
Sbjct: 257 QLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGL 316
Query: 232 TPVDQF---TDIAVDWIAQNIYWSDPKEN 257
F + VD N Y D +
Sbjct: 317 REEALFAQPNGMTVD-EDGNFYIVDGFKG 344
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 28.6 bits (64), Expect = 3.5
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 238 TDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGV----------DQPSALAVDP 287
+++D N + +D + + + +LI G QP+ +AV+P
Sbjct: 94 HGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152
Query: 288 ESGYLF------------WSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKR 335
+G +F +S SGK + + G + + + +P + L +
Sbjct: 153 STGAVFVSDGYCNSRIVQFSPSGK--FVTQWGEESSGSSPRPGQFSVPH-SLALVPHLDQ 209
Query: 336 VY 337
+
Sbjct: 210 LC 211
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 28.3 bits (63), Expect = 3.6
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 227 ETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQP-SALA 284
+ D VDWI ++N I+ A++ G V++ G P L
Sbjct: 93 GRPEFIFEDGQYPEQVDWIG--------QKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLN 144
Query: 285 VDPESGYLFW 294
L W
Sbjct: 145 KLGNGNILVW 154
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor,
pyrolloquinoline quinone (PQQ), quinoprotein, sugar
binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Length = 353
Score = 28.4 bits (64), Expect = 3.8
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 29/98 (29%)
Query: 262 ARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSE-SGKIPLIARAGLDGKKQTILAQEI 320
A ++ +D P ALA P++ + + G++
Sbjct: 2 AMAPATVNVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA--------- 52
Query: 321 IMPIK--------------DITLDR---KNKRVYWCYS 341
P+ D+ L +++R++ YS
Sbjct: 53 --PLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 28.0 bits (63), Expect = 4.5
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224
A +W +I + H +GR+ +
Sbjct: 57 DPASGTAWWFNILERELHELHLA-SGRKTVHA 87
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur
genomics, PSI-2, protein structure initiative; 2.30A
{Rhodospirillum rubrum}
Length = 154
Score = 27.6 bits (62), Expect = 4.5
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPV 234
++ D+ G + R I + DP P
Sbjct: 3 LFLEDLAVGDRFDSARHRVEAAAIKAFAGEFDPQPF 38
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 28.0 bits (63), Expect = 4.7
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 12/73 (16%)
Query: 241 AVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISG-GVDQPSALAV---DPESGYLFWSE 296
VD +++ A R++L+S QP D Y
Sbjct: 80 KVDLYG--------AVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKH 131
Query: 297 SGKIPLIARAGLD 309
+ L LD
Sbjct: 132 FADLYLTKETNLD 144
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller,
superbarrel; HET: PQQ; 1.50A {Acinetobacter
calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A*
1qbi_A
Length = 454
Score = 28.0 bits (62), Expect = 6.1
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 265 TGQYRYVLISGGVDQPSALAVDPESGYLFWSE--SGKIPLIARAGLDGKKQTIL-AQEII 321
+ + +I +++P AL P++ +E +GKI + G +T+ EI+
Sbjct: 14 SENFDKKVILSNLNKPHALLWGPDNQIWL-TERATGKILRVNPES--GSVKTVFQVPEIV 70
Query: 322 MPIK------DITLDR---KNKRVYWCYS 341
N +Y +
Sbjct: 71 NDADGQNGLLGFAFHPDFKNNPYIYISGT 99
>3ak8_A DNA protection during starvation protein; DPS-like protein,
dodecamer, iron-binding protein, metal BIN protein,
oxidoreductase; HET: DNA; 1.25A {Salmonella enterica
subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A*
1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Length = 167
Score = 27.3 bits (61), Expect = 6.4
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 188 AKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDI 240
+D H +D++ + + ++ R I E D D FT
Sbjct: 107 YPLDIHNVQDHLKELADRYAVVANDVRK------AIG--EAKDEDTADIFTAA 151
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 27.3 bits (61), Expect = 7.6
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 15/67 (22%)
Query: 219 RENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGV 277
++ II+ + ++ +VD++ K + + VL ISGG
Sbjct: 4 QQQIIKALGAKPQINAEEEIRRSVDFL---------KSYLQTYPFIKS---LVLGISGGQ 51
Query: 278 DQPSALA 284
D S LA
Sbjct: 52 D--STLA 56
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 27.5 bits (62), Expect = 7.8
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 238 TDIAVDWIAQNIYWSDPKENV-IEVARLTGQY-RYVLISGGVDQPSALAVDPESGYLF 293
+ ++ I +D N + + GQ + Q +A+ + G +
Sbjct: 210 IGVGIN-SNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDD-GSVV 265
Score = 27.1 bits (61), Expect = 8.7
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 197 DYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256
D I I ++ G +V T + + VD I + K
Sbjct: 90 DIIVTERSPTHQIQIYNQYGQ-------FVRKFGATILQHPRGVTVDN-KGRIIVVECKV 141
Query: 257 NVIEVARLTGQY-RYVLISGGVDQPSALAVDPE 288
+ + G S ++ P+ + V+ +
Sbjct: 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDK 174
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 27.3 bits (60), Expect = 8.5
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 266 GQYRYVL----ISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGK 311
Y + I+G + S+L +S L +S K I +G
Sbjct: 11 QNYHATIDGKEIAGITNNISSLTWSAQSNTL-FSTINKPAAIVEMTTNGD 59
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 27.0 bits (59), Expect = 8.9
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 199 IYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENV 258
+Y ++ + RENII + + VD I +++ + E +
Sbjct: 101 VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEIL 160
Query: 259 IEVAR 263
I+ A+
Sbjct: 161 IKNAK 165
>2vvy_A Protein B15, B14; IKK, IKK beta, BCL-2 family, early protein,
HOST-virus interaction, viral protein, immunomodulator,
NF-KB activation; 2.69A {Vaccinia virus}
Length = 169
Score = 26.7 bits (58), Expect = 9.1
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 193 HAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWS 252
+YIYW + + +R G + + + F DI + +N+ W
Sbjct: 48 QCLTEYIYWS-----SYAYRNRQCAG--QLYSTLLSFRDDAELVFIDI--RELVKNMPW- 97
Query: 253 DPKENVIEVAR 263
D ++ E+ R
Sbjct: 98 DDVKDCAEIIR 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,853,196
Number of extensions: 366551
Number of successful extensions: 1267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1079
Number of HSP's successfully gapped: 123
Length of query: 377
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 282
Effective length of database: 4,049,298
Effective search space: 1141902036
Effective search space used: 1141902036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.6 bits)