RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5792
(377 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 112 bits (280), Expect = 2e-29
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 12/212 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNE-SKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTI 209
+LF+ I + +N K + + F + +YW DI +I
Sbjct: 3 HLLFA--QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 210 SRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYR 269
R G II + IA+D + + I+W+D + + IEVA++ G R
Sbjct: 61 GRASLHGGEPTTIIR-------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113
Query: 270 YVLISGGVDQPSALAVDPESGYLFWSESGK-IPLIARAGLDGKKQTILAQEIIMPIKDIT 328
VL G+ P + DP G L+W++ + P I + +DG + ILAQ+ + +T
Sbjct: 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT 173
Query: 329 LDRKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
D + ++ W + G++ E ++ + + ++
Sbjct: 174 FDAFSSQLCWVDA-GTHRAECLNPAQPGRRKV 204
Score = 58.7 bits (141), Expect = 2e-10
Identities = 34/241 (14%), Positives = 73/241 (30%), Gaps = 36/241 (14%)
Query: 76 ANDGNIRSINLDGSN----------STVLRNNAGI-----SDFILFSVNSGYDIMGIKYN 120
A G I + L+ + + G+ + ++ S I +
Sbjct: 7 AQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH 66
Query: 121 KNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGP 180
E S +A +D + I ++ + I K + + +V G
Sbjct: 67 GGEPTTIIRQDLGSPEGIA--LDH---LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121
Query: 181 LSKVSLAAKVDFHAAEDYIYWVDIDHGT--ISRTHRDGTGRENIIEYVETGDPTPVDQFT 238
++ + +YW D + I +H DGT R + + +
Sbjct: 122 VNPRGIV----TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-------NLGLPN 170
Query: 239 DIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
+ D + + W D + E R ++ G+ P A+ L++++
Sbjct: 171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWK 227
Query: 299 K 299
Sbjct: 228 T 228
Score = 52.2 bits (124), Expect = 3e-08
Identities = 35/258 (13%), Positives = 79/258 (30%), Gaps = 18/258 (6%)
Query: 39 SLHYVNIEVKVAKVVSMPDAAQVVAAVFY--KGRIIYSDANDGNIRSINLDGSNSTVLRN 96
L ++ AK A ++ F + ++D ++ +I +L G T +
Sbjct: 16 PLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR 75
Query: 97 NAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGI----SDFI 152
S + + G I + +V ++ G +V + GI
Sbjct: 76 QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGN 135
Query: 153 LFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRT 212
L+ + D I+ + + ++ + L + F A + WVD
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
Query: 213 HRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVA-RLTGQYRYV 271
+ GR ++E + + +N+Y++D K N + +
Sbjct: 195 NPAQPGRRKVLE--------GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDT 244
Query: 272 LISGGVDQPSALAVDPES 289
+ + +
Sbjct: 245 FHPHKQTRLYGITIALSQ 262
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 106 bits (264), Expect = 5e-27
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 11/210 (5%)
Query: 151 FILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTIS 210
++ F+ + +++ + + S+ T ++ L V +D A + IYW D+ I
Sbjct: 3 YLFFT--NRHEVRKM--TLDRSEYTSLIPNLRNVV---ALDTEVASNRIYWSDLSQRMIC 55
Query: 211 RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRY 270
T D + + V + D + +AVDWI NIYW+D + VA G R
Sbjct: 56 STQLDRAHGVSSYDTVISRD---IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 112
Query: 271 VLISGGVDQPSALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLD 330
L +P A+ VDP G+++W++ G I + GL+G L E I ITLD
Sbjct: 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 172
Query: 331 RKNKRVYWCYSVGSNVLESMDYSGGSKMQL 360
+ R+YW S + + S+D +GG++ +
Sbjct: 173 LLSGRLYWVDS-KLHSISSIDVNGGNRKTI 201
Score = 63.4 bits (153), Expect = 5e-12
Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 22/262 (8%)
Query: 71 IIYSDANDGNIRSINLDGSNSTVLRNNAG---------ISDFILFSVNSGYDIMGIKYNK 121
+ +++ ++ +R + LD S T L N S+ I +S S I + ++
Sbjct: 4 LFFTNRHE--VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 122 NESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPL 181
+ + ++ +S + + K + T
Sbjct: 62 AHGVSSYDTVISRDIQAPDGLAVD--WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 182 SKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIA 241
SK ++YW D GT ++ + G +I V + I
Sbjct: 120 SKPRAIV---VDPVHGFMYWTD--WGTPAKIKKGGLNGVDIYSLVTEN----IQWPNGIT 170
Query: 242 VDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGKIP 301
+D ++ +YW D K + I + G R ++ ++ +FW++
Sbjct: 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 230
Query: 302 LIARAGLDGKKQTILAQEIIMP 323
+ + L G +LA+ ++ P
Sbjct: 231 IFSANRLTGSDVNLLAENLLSP 252
Score = 61.1 bits (147), Expect = 3e-11
Identities = 44/259 (16%), Positives = 97/259 (37%), Gaps = 18/259 (6%)
Query: 103 FILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDI 162
++ F+ + +++ + +++E + + +D S+ I +S S I
Sbjct: 3 YLFFT--NRHEVRKMTLDRSEYTS-----LIPNLRNVVALDTEV-ASNRIYWSDLSQRMI 54
Query: 163 MGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENI 222
+ ++ + + + IYW D GT+S G R+ +
Sbjct: 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL 114
Query: 223 IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKEN-VIEVARLTGQYRYVLISGGVDQPS 281
+ I VD + +YW+D I+ L G Y L++ + P+
Sbjct: 115 F-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167
Query: 282 ALAVDPESGYLFWSESGKIPLIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWCYS 341
+ +D SG L+W +S I+ ++G + + ++ +L +V+W
Sbjct: 168 GITLDLLSGRLYWVDSKL-HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT-D 225
Query: 342 VGSNVLESMDYSGGSKMQL 360
+ + + S + GS + L
Sbjct: 226 IINEAIFSANRLTGSDVNL 244
Score = 51.5 bits (122), Expect = 4e-08
Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 27/233 (11%)
Query: 66 FYKGRIIYSDANDGNIRSINLDGSNS-----TVLRNNAGISDFILFS--------VNSGY 112
RI +SD + I S LD ++ TV+ + D + +S
Sbjct: 39 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL 98
Query: 113 DIMGIKYNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES 172
+ + K + SK VD G ++ + G K N
Sbjct: 99 GTVSVADTKGVKRKTLFRENGSKPRAIV-VDPVHGF----MYWTDWGTPAKIKKGGLNGV 153
Query: 173 KVTQVLGPLSKVSLAAKVDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPT 232
+ + + + +YWVD +IS +G R+ I+E D
Sbjct: 154 DIYSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-----DEK 206
Query: 233 PVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAV 285
+ +AV ++W+D I A L++ + P + +
Sbjct: 207 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 38.3 bits (87), Expect = 0.001
Identities = 29/222 (13%), Positives = 60/222 (27%), Gaps = 3/222 (1%)
Query: 78 DGNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIKYNKNESKVQQVLGPLSKVS 137
GN+ + +G V++ G + + N Y G+ + +
Sbjct: 24 AGNVYVTS-EGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 82
Query: 138 LAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKVSLAAKVDFHAAED 197
A + D + + D G Y + V + +
Sbjct: 83 AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP 142
Query: 198 YIYWVDIDHGTISRTHRDGTGRENI-IEYVETGDPTPVDQFTDIAVDWIAQNIYWSDPKE 256
VD + + + P A +Y ++
Sbjct: 143 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT 202
Query: 257 NVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESG 298
N + VL G++ P A+AVD + ++ ++ G
Sbjct: 203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRG 243
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 34.3 bits (77), Expect = 0.022
Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 17/232 (7%)
Query: 69 GRIIYSDANDGNIRSINLDGSNSTVLRNNAGIS----DFILFSVNSGYDIMGIKYNKNES 124
G I ++ G I SI DG+ +S V +G++ I
Sbjct: 39 GTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 98
Query: 125 KVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNESKVTQVLGPLSKV 184
V L+ L + + I I + + L++
Sbjct: 99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 158
Query: 185 SLAAKV----DFHAAEDYIYWVDIDHGTISRT-HRDGTGRENIIEYVETGDPTPVDQFTD 239
+ + +++Y + + + R +VE + +
Sbjct: 159 NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE 218
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVL-ISGGVDQPSALAVDPESG 290
N+Y + N + + GV +A+A G
Sbjct: 219 -------GNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEG 263
>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 179
Score = 30.5 bits (69), Expect = 0.19
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 37/130 (28%)
Query: 61 VVAAVFYKGRIIYSDAND--GNIRSINLDGSNSTVLRNNAGISDFILFSVNSGYDIMGIK 118
V+ F + + D G I+ + G++ ++ GY IK
Sbjct: 50 VIECSFPYNKSELTGVKDLGGQIQVLQYKGNHLSL-----------------GYWYNWIK 92
Query: 119 YNKNESKVQQVLGPLSKVSLAAKVDFHAGISDFILFSVNSGYDIMGIKYNKNES------ 172
Y+ K+ + L G S IL+S G ++G NK E
Sbjct: 93 YSDRFDKMDKGAEML-----------RCGDSFPILWSERPGGALLGYADNKTEIARFSHD 141
Query: 173 -KVTQVLGPL 181
KV +V G
Sbjct: 142 GKVDEVSGSA 151
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 295
Score = 30.8 bits (68), Expect = 0.23
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 192 FHAAEDYIYWVDIDHGTISRTHRDGTGRENIIE 224
F A +W +I + H +GR+ +
Sbjct: 25 FDPASGTAWWFNILERELHELHLA-SGRKTVHA 56
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 30.4 bits (67), Expect = 0.37
Identities = 6/72 (8%), Positives = 14/72 (19%), Gaps = 1/72 (1%)
Query: 240 IAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESGYLFWSESGK 299
+ D ++ D E I + P+A+ + +
Sbjct: 45 LNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF 103
Query: 300 IPLIARAGLDGK 311
Sbjct: 104 KSTGGIFAATEN 115
Score = 27.7 bits (60), Expect = 2.2
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 195 AEDYIYWVDIDHGTISRTHRDGTGRENII 223
+ ++ +D+ G I + + + +
Sbjct: 49 RQGQLFLLDVFEGNIFKINPETKEIKRPF 77
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 29.0 bits (63), Expect = 0.82
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 8/130 (6%)
Query: 190 VDFHAAEDYIYWVDIDHGTIS---RTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIA 246
+ FH E Y Y V+ + ++ G + + + DI +
Sbjct: 182 MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241
Query: 247 QNIYWSDPKENVIEVARL---TGQYRYVLISGGVDQPSALAVDPESGYLF--WSESGKIP 301
+++Y D ++I V + QP VD YL +S I
Sbjct: 242 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHIS 301
Query: 302 LIARAGLDGK 311
+ G G
Sbjct: 302 VYEIVGEQGL 311
Score = 28.3 bits (61), Expect = 1.4
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 246 AQNIYWSDPKENVIEVARL--TGQYRYVLISGGVDQPSALAVDPESGYLF--WSESGKIP 301
Q +Y + P+ I V L G + Q + V P+ YL+ ++
Sbjct: 3 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVL 62
Query: 302 LIARAGLDGKKQTILAQEIIMPIKDITLDRKNKRVYWC 339
A DG + + I+ D + + V+
Sbjct: 63 AYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVG 100
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific
cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId:
203496]}
Length = 427
Score = 27.4 bits (59), Expect = 3.2
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 190 VDFHAAEDYIYWVDIDHGTISRTHRDGTGRENIIEYVETGDPTPVDQFTDIAVDWIAQNI 249
+ H + + D G R GT + + + IA+D +
Sbjct: 17 IVAHPKTKDLLYARTDIGGAYRW-DAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDR 75
Query: 250 YW 251
+
Sbjct: 76 LY 77
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 26.4 bits (58), Expect = 6.0
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 13/84 (15%)
Query: 91 STVLRNNAG-ISDFILFSVNSGYDIMGIK-----------YNKNESKVQQVLGPLSKVSL 138
S V+ G I+DF F + + I+ Y ++ Q K +
Sbjct: 95 SYVVEQPDGKITDFFSF-YSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATK 153
Query: 139 AAKVDFHAGISDFILFSVNSGYDI 162
A K I D + + N+ D+
Sbjct: 154 ALKTRLCELIYDACILAKNANMDV 177
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 26.3 bits (57), Expect = 7.1
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 230 DPTPVDQFTDIAVDWIAQNIY--WSDPKENVIEVARLTG 266
D + + + A A+ + W + ++R+ G
Sbjct: 14 DANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKG 52
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 25.2 bits (54), Expect = 9.2
Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 231 PTPVDQFTDIAVDWIAQNIYWSDPKENVIEVARLTGQYRYVLISGGVDQPSALAVDPESG 290
P + V W+ + + + + +++ R Y I SA+ V
Sbjct: 9 PFASEMAISKTVAWLNEQLELGNERLLLMDC-RPQELYESSHI------ESAINVAIPGI 61
Query: 291 YLFWSESGKIPLIARAGLDGKKQTILAQEIIMPI 324
L + G +P+ A + + +
Sbjct: 62 MLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDTV 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,402,571
Number of extensions: 66243
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 24
Length of query: 377
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,213,086
Effective search space: 351794940
Effective search space used: 351794940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)