BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5794
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A54|A Chain A, Crystal Structure Of The A47q1 Mutant Of
           Pro-Protein-Glutaminase
 pdb|3A54|B Chain B, Crystal Structure Of The A47q1 Mutant Of
           Pro-Protein-Glutaminase
 pdb|3A55|A Chain A, Crystal Structure Of The A47q2 Mutant Of Pro-
           Protein-Glutaminase
 pdb|3A55|B Chain B, Crystal Structure Of The A47q2 Mutant Of Pro-
           Protein-Glutaminase
          Length = 305

 Score = 27.3 bits (59), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)

Query: 38  LTQSIKNVKETQVRDIHIVILRFVIPGEEANNLDLSPDSG-INDLQNLSPEEQEKQKAEW 96
           LTQ    +K T+  + +I +LR  +  E   ++ L P+S  I  +++ SPE+    K   
Sbjct: 45  LTQQFYEIKPTKENEQYIGMLRQAVKNESPVHIFLKPNSNEIGKVESASPEDVRYFKTIL 104

Query: 97  TQE-------LARVEEEINTLKHVL 114
           T+E       LA V  ++ TL  + 
Sbjct: 105 TKEVKGQTNKLASVIPDVATLNSLF 129


>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
          Length = 199

 Score = 26.6 bits (57), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 10 HVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVR 51
          H++   +K+      K G  +W+EF+   T ++K V E   R
Sbjct: 1  HLVCPXSKSPYVDPHKSGHEIWEEFSXSFTPAVKEVVEFAKR 42



 Score = 26.2 bits (56), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 112 HVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKE 149
           H++   +K+      K G  +W+EF+   T ++K V E
Sbjct: 1   HLVCPXSKSPYVDPHKSGHEIWEEFSXSFTPAVKEVVE 38


>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
           Reductase Suggests A Novel Mechanism Of Electron
           Transfer By Diflavin Reductases.
 pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
           Reductase Suggests A Novel Mechanism Of Electron
           Transfer By Diflavin Reductases.
 pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
           Reductase Suggests A Novel Mechanism Of Electron
           Transfer By Diflavin Reductase
 pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
           Reductase Suggests A Novel Mechanism Of Electron
           Transfer By Diflavin Reductase
          Length = 682

 Score = 26.2 bits (56), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 11  VLASKTKTAQDLKKKLGFTVWKEFN-DDLTQSIKNVKETQVRDIHIVILRFVIPGEEANN 69
           + AS+T TA+D  KK    +  +FN + +   ++N     + D+ +++  F+    E + 
Sbjct: 55  LYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD- 113

Query: 70  LDLSPDSGIN 79
               PD  +N
Sbjct: 114 ---FPDGAVN 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.127    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,290,028
Number of Sequences: 62578
Number of extensions: 154499
Number of successful extensions: 444
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 29
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.7 bits)