Query psy5794
Match_columns 152
No_of_seqs 164 out of 202
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:07:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04201 TPD52: Tumour protein 100.0 2.2E-30 4.7E-35 206.8 8.0 82 61-152 9-90 (162)
2 KOG4010|consensus 100.0 3.5E-29 7.5E-34 204.9 6.6 73 76-152 33-105 (208)
3 KOG4010|consensus 99.9 2.1E-28 4.6E-33 200.2 0.8 87 1-90 56-168 (208)
4 PF04201 TPD52: Tumour protein 99.9 5.2E-26 1.1E-30 181.7 0.3 84 1-90 41-127 (162)
5 PF14389 Lzipper-MIP1: Leucine 81.9 4.8 0.0001 29.1 5.4 38 80-129 48-85 (88)
6 KOG4673|consensus 72.4 19 0.0004 36.0 7.9 124 3-128 612-762 (961)
7 TIGR02889 spore_YpeB germinati 72.0 7.6 0.00016 35.7 5.1 69 79-149 117-185 (435)
8 PRK00736 hypothetical protein; 65.0 33 0.00073 23.7 6.0 43 85-130 2-44 (68)
9 PF06698 DUF1192: Protein of u 61.2 30 0.00066 23.8 5.2 35 79-120 16-50 (59)
10 PF14643 DUF4455: Domain of un 59.5 72 0.0016 29.1 8.8 134 1-140 132-291 (473)
11 PF06667 PspB: Phage shock pro 57.9 29 0.00062 24.9 4.8 35 82-117 34-68 (75)
12 PF09726 Macoilin: Transmembra 57.1 92 0.002 30.4 9.5 103 1-128 550-652 (697)
13 PHA01750 hypothetical protein 56.8 47 0.001 24.0 5.6 39 91-129 35-73 (75)
14 PF01920 Prefoldin_2: Prefoldi 56.4 54 0.0012 22.8 6.0 37 93-129 64-100 (106)
15 PRK09458 pspB phage shock prot 56.0 32 0.00069 24.9 4.8 35 82-117 34-68 (75)
16 PF08776 VASP_tetra: VASP tetr 55.4 25 0.00054 22.8 3.7 22 94-115 14-36 (40)
17 PF15456 Uds1: Up-regulated Du 54.9 34 0.00074 26.4 5.1 34 79-116 14-47 (124)
18 PRK00295 hypothetical protein; 54.3 67 0.0014 22.2 6.0 43 85-130 2-44 (68)
19 PF04822 Takusan: Takusan; In 53.9 56 0.0012 23.8 5.8 34 82-115 9-43 (84)
20 PF06628 Catalase-rel: Catalas 52.7 40 0.00087 22.9 4.7 26 83-108 19-45 (68)
21 PF07139 DUF1387: Protein of u 51.8 31 0.00067 30.7 5.0 45 94-141 203-253 (302)
22 PF04102 SlyX: SlyX; InterPro 50.6 76 0.0016 21.7 5.8 36 94-129 7-42 (69)
23 PF10168 Nup88: Nuclear pore c 50.2 97 0.0021 30.3 8.4 29 82-115 628-656 (717)
24 PF11221 Med21: Subunit 21 of 49.2 67 0.0015 24.8 6.0 42 83-127 96-137 (144)
25 PF14620 YPEB: YpeB sporulatio 49.0 33 0.00071 30.6 4.7 50 80-130 108-157 (361)
26 PF09784 L31: Mitochondrial ri 47.9 23 0.0005 27.1 3.1 45 81-129 13-57 (103)
27 TIGR01795 CM_mono_cladeE monof 47.8 48 0.001 24.1 4.7 37 94-133 6-45 (94)
28 KOG0930|consensus 47.3 78 0.0017 28.8 6.8 62 79-141 6-85 (395)
29 PF05911 DUF869: Plant protein 47.1 1E+02 0.0022 30.6 8.1 36 94-129 261-296 (769)
30 cd00187 TOP4c DNA Topoisomeras 46.3 34 0.00074 31.5 4.5 43 82-128 400-442 (445)
31 PF13744 HTH_37: Helix-turn-he 46.2 41 0.0009 23.1 4.0 43 82-132 3-45 (80)
32 TIGR01005 eps_transp_fam exopo 46.1 1.9E+02 0.0041 27.5 9.6 29 2-30 200-228 (754)
33 TIGR01061 parC_Gpos DNA topois 45.8 32 0.00069 33.6 4.5 42 81-126 421-462 (738)
34 PF07106 TBPIP: Tat binding pr 45.7 96 0.0021 24.0 6.4 8 82-89 67-74 (169)
35 PRK09239 chorismate mutase; Pr 45.2 97 0.0021 23.0 6.1 37 94-133 13-52 (104)
36 TIGR01791 CM_archaeal chorisma 44.3 61 0.0013 22.4 4.7 37 94-133 2-41 (83)
37 PRK11546 zraP zinc resistance 44.1 78 0.0017 25.3 5.7 38 81-122 41-78 (143)
38 PF14282 FlxA: FlxA-like prote 43.4 96 0.0021 22.9 5.8 36 82-117 42-77 (106)
39 PF09537 DUF2383: Domain of un 43.3 36 0.00079 24.2 3.5 62 7-68 35-101 (111)
40 TIGR02976 phageshock_pspB phag 41.8 71 0.0015 22.8 4.7 35 82-117 34-68 (75)
41 TIGR01063 gyrA DNA gyrase, A s 41.6 41 0.00088 33.1 4.5 45 82-130 422-473 (800)
42 PF05121 GvpK: Gas vesicle pro 41.3 43 0.00094 24.9 3.6 27 106-132 46-72 (88)
43 PRK05561 DNA topoisomerase IV 41.3 37 0.00079 33.2 4.1 45 82-130 432-483 (742)
44 PRK04325 hypothetical protein; 41.1 1.2E+02 0.0026 21.3 5.7 36 94-129 12-47 (74)
45 PRK15052 D-tagatose-1,6-bispho 40.4 79 0.0017 29.4 5.9 77 47-139 257-340 (421)
46 PF07768 PVL_ORF50: PVL ORF-50 40.0 1.7E+02 0.0038 22.6 6.9 22 20-42 16-37 (118)
47 PF02318 FYVE_2: FYVE-type zin 39.9 59 0.0013 24.2 4.2 10 82-91 1-10 (118)
48 TIGR01801 CM_A chorismate muta 39.7 92 0.002 23.0 5.2 38 94-134 7-47 (102)
49 PRK06342 transcription elongat 39.6 1.9E+02 0.0041 23.1 7.3 29 79-111 26-54 (160)
50 PF15290 Syntaphilin: Golgi-lo 39.4 1E+02 0.0022 27.6 6.2 38 88-126 86-128 (305)
51 PRK07248 hypothetical protein; 38.2 1E+02 0.0022 21.6 5.0 37 94-133 4-43 (87)
52 KOG3335|consensus 37.7 75 0.0016 26.5 4.9 51 82-139 97-149 (181)
53 TIGR01807 CM_P2 chorismate mut 37.5 1E+02 0.0023 21.0 4.9 37 94-133 2-43 (76)
54 TIGR03042 PS_II_psbQ_bact phot 37.2 1.8E+02 0.0039 23.2 6.8 58 80-141 26-83 (142)
55 PRK09413 IS2 repressor TnpA; R 37.0 72 0.0016 23.5 4.3 22 93-114 80-101 (121)
56 cd00632 Prefoldin_beta Prefold 36.1 1.1E+02 0.0025 22.0 5.2 35 94-128 66-100 (105)
57 PF06698 DUF1192: Protein of u 35.8 91 0.002 21.5 4.3 28 86-116 26-53 (59)
58 PF05121 GvpK: Gas vesicle pro 35.7 58 0.0013 24.2 3.6 30 2-31 44-73 (88)
59 TIGR01062 parC_Gneg DNA topois 35.7 58 0.0013 32.0 4.5 37 94-130 427-470 (735)
60 TIGR01805 CM_mono_grmpos monof 35.5 1E+02 0.0022 21.3 4.7 37 94-133 2-41 (81)
61 PF07544 Med9: RNA polymerase 34.7 80 0.0017 22.3 4.1 27 83-116 51-77 (83)
62 PF04880 NUDE_C: NUDE protein, 34.6 25 0.00054 28.6 1.6 38 84-122 18-55 (166)
63 KOG4571|consensus 34.2 87 0.0019 27.9 5.0 24 94-117 265-288 (294)
64 PF01418 HTH_6: Helix-turn-hel 33.7 28 0.0006 23.8 1.5 23 123-145 53-75 (77)
65 TIGR01799 CM_T chorismate muta 33.4 1.2E+02 0.0025 21.2 4.7 37 94-133 2-41 (83)
66 PRK07857 hypothetical protein; 33.2 2.2E+02 0.0047 21.7 6.6 38 94-134 31-71 (106)
67 PF10186 Atg14: UV radiation r 33.1 1.6E+02 0.0035 23.8 6.2 34 94-127 66-99 (302)
68 PF14077 WD40_alt: Alternative 32.9 29 0.00064 23.3 1.5 20 94-113 14-33 (48)
69 PF11365 DUF3166: Protein of u 32.9 1.3E+02 0.0027 22.6 5.0 32 94-125 4-35 (96)
70 PF08317 Spc7: Spc7 kinetochor 32.4 1.7E+02 0.0037 25.3 6.5 43 81-127 203-245 (325)
71 PRK02793 phi X174 lysis protei 32.1 1.8E+02 0.0038 20.3 6.3 35 94-128 11-45 (72)
72 PRK04406 hypothetical protein; 31.5 1.9E+02 0.0041 20.4 5.7 35 94-128 14-48 (75)
73 PRK01631 hypothetical protein; 31.3 1.3E+02 0.0028 21.9 4.6 18 82-100 18-35 (76)
74 PRK02119 hypothetical protein; 31.2 1.9E+02 0.004 20.3 5.7 36 94-129 12-47 (73)
75 PF12128 DUF3584: Protein of u 31.2 4.1E+02 0.0089 27.3 9.8 114 4-124 512-633 (1201)
76 PRK00888 ftsB cell division pr 30.9 1.4E+02 0.0031 22.1 5.0 45 91-135 34-82 (105)
77 PRK02539 hypothetical protein; 30.8 1.3E+02 0.0027 22.4 4.6 18 82-100 19-36 (85)
78 PRK13979 DNA topoisomerase IV 30.8 77 0.0017 32.1 4.6 45 81-129 440-491 (957)
79 PF08178 GnsAB: GnsA/GnsB fami 30.5 51 0.0011 22.6 2.3 23 101-129 8-30 (54)
80 PF13801 Metal_resist: Heavy-m 30.5 1.8E+02 0.0038 19.8 5.7 38 82-123 40-77 (125)
81 PF12329 TMF_DNA_bd: TATA elem 30.2 1.2E+02 0.0026 21.2 4.3 32 95-126 37-68 (74)
82 PRK05560 DNA gyrase subunit A; 30.2 76 0.0017 31.2 4.4 45 82-130 425-476 (805)
83 PF04977 DivIC: Septum formati 29.7 1.7E+02 0.0036 19.2 5.7 39 94-132 27-69 (80)
84 PTZ00421 coronin; Provisional 29.5 1.2E+02 0.0026 27.9 5.3 33 92-124 454-486 (493)
85 PRK01546 hypothetical protein; 29.0 1.5E+02 0.0032 21.7 4.6 19 81-100 19-37 (79)
86 TIGR03017 EpsF chain length de 28.8 2E+02 0.0044 25.1 6.4 32 1-32 176-207 (444)
87 TIGR03184 DNA_S_dndE DNA sulfu 28.7 31 0.00068 25.9 1.2 18 119-136 9-26 (105)
88 PRK02224 chromosome segregatio 28.1 3.7E+02 0.0081 25.8 8.5 24 4-27 378-401 (880)
89 PF05979 DUF896: Bacterial pro 28.1 57 0.0012 22.9 2.3 18 82-100 17-34 (65)
90 PRK10360 DNA-binding transcrip 27.6 68 0.0015 23.4 2.8 27 118-144 170-196 (196)
91 PRK06285 chorismate mutase; Pr 26.9 1.9E+02 0.0041 20.8 5.0 37 94-133 10-49 (96)
92 PF10458 Val_tRNA-synt_C: Valy 26.9 1.5E+02 0.0032 19.9 4.2 25 92-116 5-29 (66)
93 TIGR03007 pepcterm_ChnLen poly 26.8 4E+02 0.0086 23.8 8.0 28 2-29 167-194 (498)
94 TIGR01803 CM-like chorismate m 26.5 1.8E+02 0.004 20.1 4.7 37 94-133 2-41 (82)
95 PF11300 DUF3102: Protein of u 26.3 2.4E+02 0.0052 22.1 5.8 52 2-61 7-66 (130)
96 PHA02557 22 prohead core prote 26.2 3.1E+02 0.0067 24.3 7.0 42 86-127 136-177 (271)
97 TIGR01797 CM_P_1 chorismate mu 26.1 2.1E+02 0.0044 19.9 4.9 37 94-133 2-41 (83)
98 PF00816 Histone_HNS: H-NS his 26.0 1.3E+02 0.0029 21.1 4.0 38 95-132 2-40 (93)
99 PF12329 TMF_DNA_bd: TATA elem 25.9 1.8E+02 0.0038 20.3 4.5 22 94-115 50-71 (74)
100 TIGR01808 CM_M_hiGC-arch monof 25.9 2.1E+02 0.0046 19.7 4.9 38 94-134 3-43 (74)
101 TIGR02810 agaZ_gatZ D-tagatose 24.7 1.2E+02 0.0026 28.3 4.4 63 47-124 258-327 (420)
102 COG0099 RpsM Ribosomal protein 24.5 98 0.0021 24.3 3.3 31 2-40 50-80 (121)
103 KOG4643|consensus 24.4 2.3E+02 0.005 29.7 6.5 113 28-146 112-227 (1195)
104 PF09824 ArsR: ArsR transcript 24.2 95 0.0021 25.5 3.3 20 114-133 117-136 (160)
105 PRK00846 hypothetical protein; 23.9 2.8E+02 0.0061 19.9 5.7 43 87-129 9-51 (77)
106 PF08870 DUF1832: Domain of un 23.4 49 0.0011 25.0 1.4 18 119-136 10-27 (113)
107 PRK15458 tagatose 6-phosphate 23.3 1.4E+02 0.0031 27.8 4.6 59 47-120 262-326 (426)
108 PF13907 DUF4208: Domain of un 23.1 2.6E+02 0.0056 20.3 5.1 42 82-128 37-78 (100)
109 PF00901 Orbi_VP5: Orbivirus o 22.9 1.5E+02 0.0033 28.3 4.8 52 80-141 78-129 (508)
110 PF15188 CCDC-167: Coiled-coil 22.6 1.7E+02 0.0038 21.4 4.1 34 82-126 31-64 (85)
111 KOG4196|consensus 22.6 3.1E+02 0.0067 22.0 5.8 24 91-114 81-104 (135)
112 PF09177 Syntaxin-6_N: Syntaxi 22.4 2.9E+02 0.0063 19.6 5.4 36 85-120 33-68 (97)
113 KOG4196|consensus 22.2 3.3E+02 0.0071 21.9 5.8 40 89-128 72-111 (135)
114 PRK06443 chorismate mutase; Va 22.2 2E+02 0.0044 23.9 4.9 39 94-135 8-49 (177)
115 PF00769 ERM: Ezrin/radixin/mo 22.1 1.8E+02 0.0039 24.5 4.7 42 83-128 71-112 (246)
116 PRK09039 hypothetical protein; 21.7 2.3E+02 0.005 25.0 5.5 50 94-143 147-202 (343)
117 COG3019 Predicted metal-bindin 21.2 98 0.0021 25.1 2.8 53 20-80 62-118 (149)
118 PRK14163 heat shock protein Gr 21.2 4.2E+02 0.0091 22.4 6.7 21 94-114 43-63 (214)
119 TIGR00293 prefoldin, archaeal 21.2 3.3E+02 0.0073 19.8 7.4 41 84-127 82-122 (126)
120 PF10165 Ric8: Guanine nucleot 21.1 1.8E+02 0.0038 26.5 4.7 25 79-103 402-426 (446)
121 PF07544 Med9: RNA polymerase 21.0 2.4E+02 0.0052 19.9 4.5 24 104-127 58-81 (83)
122 PF07798 DUF1640: Protein of u 20.7 4.3E+02 0.0092 20.8 6.4 31 110-141 118-148 (177)
123 PF11629 Mst1_SARAH: C termina 20.3 2.8E+02 0.0062 18.6 4.8 35 81-118 5-39 (49)
124 PRK09706 transcriptional repre 20.3 3.7E+02 0.0079 19.9 9.8 24 7-30 9-32 (135)
125 smart00787 Spc7 Spc7 kinetocho 20.2 2.3E+02 0.005 24.9 5.1 43 82-128 199-241 (312)
No 1
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=99.96 E-value=2.2e-30 Score=206.75 Aligned_cols=82 Identities=37% Similarity=0.539 Sum_probs=74.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchHHhhHHH
Q psy5794 61 VIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDL 140 (152)
Q Consensus 61 v~~geda~~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~elkqn~ 140 (152)
+++|+|++++.. +.+++|||||+ +|||.||+|||+||+||||||+||++||+|||||||||||++|||||
T Consensus 9 ~e~~~~~~~~~~------~~~~~LsEeE~----eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnl 78 (162)
T PF04201_consen 9 TEEGEDTAASIS------ASEEGLSEEER----EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNL 78 (162)
T ss_pred CCCCcchhhhcc------CCcccCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHH
Confidence 478888876432 34589999998 59999999999999999999999999999999999999999999999
Q ss_pred hhchhhhhhcCC
Q psy5794 141 TQSIKNVKETQV 152 (152)
Q Consensus 141 skg~~~vq~s~~ 152 (152)
++||||||+|++
T Consensus 79 skg~~~vq~S~a 90 (162)
T PF04201_consen 79 SKGWHDVQDSNA 90 (162)
T ss_pred HHHhHhhhchhH
Confidence 999999999985
No 2
>KOG4010|consensus
Probab=99.95 E-value=3.5e-29 Score=204.88 Aligned_cols=73 Identities=45% Similarity=0.687 Sum_probs=68.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchHHhhHHHhhchhhhhhcCC
Q psy5794 76 SGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQV 152 (152)
Q Consensus 76 ~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~elkqn~skg~~~vq~s~~ 152 (152)
+.++.+.+||+||++ |||.||+||||||+||||||+||+|||+|||||||||+|+||+|||++|||||+.|++
T Consensus 33 ~s~s~~~~LSe~Eke----elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~ 105 (208)
T KOG4010|consen 33 ASASEFEALSEEEKE----ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTA 105 (208)
T ss_pred hhhhHHhhhcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHH
Confidence 344678999999985 9999999999999999999999999999999999999999999999999999999874
No 3
>KOG4010|consensus
Probab=99.94 E-value=2.1e-28 Score=200.24 Aligned_cols=87 Identities=37% Similarity=0.449 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhHHHhhcccccccccchh-hh-----------------hhhhhccc
Q psy5794 1 VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRD-IH-----------------IVILRFVI 62 (152)
Q Consensus 1 vEeEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkqniskg~~dv~~s~aY~-t~-----------------etl~riv~ 62 (152)
|||||.||||||+||+|||+|||||||||+|+||+|||++|||||+.|++|+ |+ +|+.+
T Consensus 56 vEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~kt~~~~g~~~~~vy~~~~tqetlSq--- 132 (208)
T KOG4010|consen 56 VEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAYVKTSQSVGTFTKTVYEAPLTQETLSQ--- 132 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHHHhhhhhccccceeeecccchhhHHh---
Confidence 6999999999999999999999999999999999999999999999999999 88 88887
Q ss_pred ccccccccCCCCCCCC--------CCCCCCCHHHHH
Q psy5794 63 PGEEANNLDLSPDSGI--------NDLQNLSPEEQE 90 (152)
Q Consensus 63 ~geda~~~~~s~~~~~--------~~~~~LseEE~e 90 (152)
.|+.+++.+++.++.| |++.+-|+|++.
T Consensus 133 agQKtsaa~ssvgs~Is~Kl~dmkNS~tfkSfE~~v 168 (208)
T KOG4010|consen 133 AGQKTSAAFSSVGSAISRKLGDMKNSATFKSFEEKV 168 (208)
T ss_pred hhHHHHHHHHHHhHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999999888777 777777887764
No 4
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=99.91 E-value=5.2e-26 Score=181.66 Aligned_cols=84 Identities=30% Similarity=0.353 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhHHHhhcccccccccchh---hhhhhhhcccccccccccCCCCCCC
Q psy5794 1 VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRD---IHIVILRFVIPGEEANNLDLSPDSG 77 (152)
Q Consensus 1 vEeEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkqniskg~~dv~~s~aY~---t~etl~riv~~geda~~~~~s~~~~ 77 (152)
||+||+||||||+||+|||+|||||||||+|++|||||++||||||+|+||+ |++.+.- .|.-..--++ ..
T Consensus 41 vEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~gqKTsaa~s~---~g~~i~~Kl~---dm 114 (162)
T PF04201_consen 41 VEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAFSS---VGSAISRKLG---DM 114 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHHHHHHHHHHHH---HHHHHHHHHH---HH
Confidence 6999999999999999999999999999999999999999999999999994 7777765 3332221110 12
Q ss_pred CCCCCCCCHHHHH
Q psy5794 78 INDLQNLSPEEQE 90 (152)
Q Consensus 78 ~~~~~~LseEE~e 90 (152)
-|++.+-|+||+.
T Consensus 115 rnS~tFKSfEeKV 127 (162)
T PF04201_consen 115 RNSPTFKSFEEKV 127 (162)
T ss_pred hcchHHHhHHHHh
Confidence 3677788888864
No 5
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=81.89 E-value=4.8 Score=29.10 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 80 DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 80 ~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.|..+.+.=+ +|-.|++-+|.||.-| |.+..+|.++|+
T Consensus 48 ~~~~lp~~~k-----eLL~EIA~lE~eV~~L-------E~~v~~L~~~l~ 85 (88)
T PF14389_consen 48 SPSSLPKKAK-----ELLEEIALLEAEVAKL-------EQKVLSLYRQLF 85 (88)
T ss_pred ccccCChHHH-----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4456665554 8899999999999988 567777777653
No 6
>KOG4673|consensus
Probab=72.41 E-value=19 Score=36.05 Aligned_cols=124 Identities=23% Similarity=0.201 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhHH------Hh---hcccccccccchh--hhhhhhhcc---cccccc-
Q psy5794 3 EEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD------LT---QSIKNVKETQVRD--IHIVILRFV---IPGEEA- 67 (152)
Q Consensus 3 eEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkqn------is---kg~~dv~~s~aY~--t~etl~riv---~~geda- 67 (152)
.||..|-+-|.+-++||.+|-+.+|-|+--=|||- ++ -.|.....+---+ -|-|++|+. +-|+.-
T Consensus 612 ~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqE 691 (961)
T KOG4673|consen 612 GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQE 691 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHH
Confidence 68999999999999999999999998764334331 11 1222111111111 234455532 212211
Q ss_pred --cccCCCCCCCCCCCCCCCHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 68 --NNLDLSPDSGINDLQNLSPEEQE----------KQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 68 --~~~~~s~~~~~~~~~~LseEE~e----------~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
+.-++-|.+++ ...|...|+- ....+++.|+.-..+||.+|.--.+.-+..|.++|+++
T Consensus 692 lL~~~~~l~s~~~--q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 692 LLSLNFSLPSSPI--QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHhcCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111 0122222211 12356677777778888888777777777777777764
No 7
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=72.00 E-value=7.6 Score=35.69 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=57.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchHHhhHHHhhchhhhhh
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKE 149 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~elkqn~skg~~~vq~ 149 (152)
.+-..||++|++.. ++|...-.+++.+.+.+.+-+...--+++++.++++ ..+.....++..|+++|+.
T Consensus 117 ~~g~~lt~~e~~tL-~~L~~~a~~l~~~L~~~q~~v~~g~l~w~~~~~~~~-~~~~~~~~~~~~~f~~ve~ 185 (435)
T TIGR02889 117 AEGKSLSDKEYKTL-TTLYNQAVKLENQLRKVQNIVMQGGVRWGEIRKLYS-GDEAQMPEAILNDFKDVEK 185 (435)
T ss_pred ccCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCccchhHhhhhc-cccccCCcchhhHHHHHHH
Confidence 34478999999755 889999999999999999999999999999999777 6666777777888887764
No 8
>PRK00736 hypothetical protein; Provisional
Probab=65.01 E-value=33 Score=23.67 Aligned_cols=43 Identities=33% Similarity=0.396 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCc
Q psy5794 85 SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGF 130 (152)
Q Consensus 85 seEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGi 130 (152)
|-++|- .+|..-++=.|+-|..|-.|++.-.+....|++++..
T Consensus 2 ~~e~Ri---~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~ 44 (68)
T PRK00736 2 DAEERL---TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDA 44 (68)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455664 7899999999999999999999999999999988553
No 9
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=61.17 E-value=30 Score=23.80 Aligned_cols=35 Identities=37% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKT 120 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~ 120 (152)
.+++.||-+|- ..-++-++.||.-+++-++.|..+
T Consensus 16 ~dLs~lSv~EL-------~~RIa~L~aEI~R~~~~~~~K~a~ 50 (59)
T PF06698_consen 16 EDLSLLSVEEL-------EERIALLEAEIARLEAAIAKKSAS 50 (59)
T ss_pred CCchhcCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888998865 455555666677676666666543
No 10
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=59.51 E-value=72 Score=29.10 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhH------HHhhcccccccccchhhhhhhhh---cc-ccccccc--
Q psy5794 1 VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFND------DLTQSIKNVKETQVRDIHIVILR---FV-IPGEEAN-- 68 (152)
Q Consensus 1 vEeEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkq------niskg~~dv~~s~aY~t~etl~r---iv-~~geda~-- 68 (152)
++.|+-.+-|+|.+..+-.++|-..|.-+.+..-+. +....|+..+.-.+-.--.++|+ |+ |++-.+.
T Consensus 132 i~~ea~~iN~~ll~Nrra~a~L~~~L~~~~~~~e~~~~~~w~~~~~~Wr~l~~~~~i~~f~~~~~s~~~~~P~~~~~~~e 211 (473)
T PF14643_consen 132 IEKEAMEINQALLGNRRAYADLFANLMEAELQRELSYRRRWQDRVDDWRALRHERAIQEFREFMASEEFQNPPERKQLLE 211 (473)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCccccCCChHHHHHHH
Confidence 367888999999999999999988888777654442 23334443333222211111111 00 1111000
Q ss_pred --------------ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchH
Q psy5794 69 --------------NLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWK 134 (152)
Q Consensus 69 --------------~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~ 134 (152)
..+.+- ....|+.+|.+.- ++|...|..+-+.|.+..+....+.+..-+-...=.+.-+.
T Consensus 212 ~~~~~Q~~l~~~r~~~L~~l--~~l~Pp~~t~~~v----~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve 285 (473)
T PF14643_consen 212 QMRKEQVDLHEKRLELLQSL--CDLLPPNLTKEKV----EEWYASLNALNEQIDEYHQQCMEKLRALYEKICQECLALVE 285 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hcCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0045678888875 59999999998888877776666665555444444444444
Q ss_pred HhhHHH
Q psy5794 135 EFNDDL 140 (152)
Q Consensus 135 elkqn~ 140 (152)
.+++.+
T Consensus 286 ~~k~~L 291 (473)
T PF14643_consen 286 KLKQEL 291 (473)
T ss_pred HHHHHH
Confidence 444444
No 11
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=57.86 E-value=29 Score=24.91 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
.+||++|.. +-++|-..-.++++-|+||=..|.|.
T Consensus 34 ~gLs~~d~~-~L~~L~~~a~rm~eRI~tLE~ILdae 68 (75)
T PF06667_consen 34 QGLSEEDEQ-RLQELYEQAERMEERIETLERILDAE 68 (75)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 589999975 44888899999999999999888764
No 12
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.07 E-value=92 Score=30.42 Aligned_cols=103 Identities=22% Similarity=0.327 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhHHHhhcccccccccchhhhhhhhhcccccccccccCCCCCCCCCC
Q psy5794 1 VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRDIHIVILRFVIPGEEANNLDLSPDSGIND 80 (152)
Q Consensus 1 vEeEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkqniskg~~dv~~s~aY~t~etl~riv~~geda~~~~~s~~~~~~~ 80 (152)
+|.||..||.=|..|+-++..+...+ .+|+.--..+ -.++.+-+..-..|+ +.+. .-
T Consensus 550 lE~E~~~lr~elk~kee~~~~~e~~~-----~~lr~~~~e~---~~~~e~L~~aL~amq-----dk~~----------~L 606 (697)
T PF09726_consen 550 LESELKKLRRELKQKEEQIRELESEL-----QELRKYEKES---EKDTEVLMSALSAMQ-----DKNQ----------HL 606 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhh---hhhHHHHHHHHHHHH-----HHHH----------HH
Confidence 48899999999999999999999875 3344321000 011111111112333 1111 01
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
=..||.|-|.++ +|=+-|-..--+|.-+-.-|..|++...|||.|+
T Consensus 607 E~sLsaEtriKl--dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki 652 (697)
T PF09726_consen 607 ENSLSAETRIKL--DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKI 652 (697)
T ss_pred HHhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 147888888644 7878888777777777778889999999999874
No 13
>PHA01750 hypothetical protein
Probab=56.81 E-value=47 Score=24.01 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 91 KQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 91 ~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
+-++-.+.||..+--||+.+.--.-.-+++..|||||+.
T Consensus 35 AvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 334567888888888888776444455677788888863
No 14
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.39 E-value=54 Score=22.77 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 93 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+.|......++.+|..|+--+...++.+.+++.+|.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999988764
No 15
>PRK09458 pspB phage shock protein B; Provisional
Probab=56.04 E-value=32 Score=24.91 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
.+||++|+. +-++|-..-.++++-|+||=..|.|-
T Consensus 34 ~~Ls~~d~~-~L~~L~~~A~rm~~RI~tLE~ILDae 68 (75)
T PRK09458 34 QGLSQEEQQ-RLAQLTEKAERMRERIQALEAILDAE 68 (75)
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 589999975 44788888889999999998888763
No 16
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=55.40 E-value=25 Score=22.79 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHH-HHHHHHH
Q psy5794 94 AEWTQELARVEEEIN-TLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~-TLrqvLa 115 (152)
+|.|.||.|+.+||- .+||-|.
T Consensus 14 ~EvrkEl~K~K~EIIeA~~~eL~ 36 (40)
T PF08776_consen 14 EEVRKELQKVKEEIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999988765 7777664
No 17
>PF15456 Uds1: Up-regulated During Septation
Probab=54.91 E-value=34 Score=26.39 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=29.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
..++.||.||-+ +|+.|+..+..-|..+|.-|+.
T Consensus 14 ~~feiLs~eEVe----~LKkEl~~L~~R~~~lr~kl~l 47 (124)
T PF15456_consen 14 KEFEILSFEEVE----ELKKELRSLDSRLEYLRRKLAL 47 (124)
T ss_pred HcCcccCHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999985 9999999999999999987664
No 18
>PRK00295 hypothetical protein; Provisional
Probab=54.30 E-value=67 Score=22.16 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCc
Q psy5794 85 SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGF 130 (152)
Q Consensus 85 seEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGi 130 (152)
|-++|- .+|..-++=.|+-|..|-.|++.-.+....|++.+..
T Consensus 2 ~~e~Ri---~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 2 SLEERV---TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345553 7889999999999999999999999888888887543
No 19
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=53.90 E-value=56 Score=23.84 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.7
Q ss_pred CCCCHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQE-KQKAEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 82 ~~LseEE~e-~~~eelr~EL~kvEeEI~TLrqvLa 115 (152)
+.+|..+.. ...|+|..+|-++-.|=.-||..|+
T Consensus 9 ~~ls~~e~~~k~lE~L~~eL~~it~ERnELr~~L~ 43 (84)
T PF04822_consen 9 PNLSKKEKKMKELERLKFELQKITKERNELRDILA 43 (84)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468877766 6778999999999988889999887
No 20
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=52.71 E-value=40 Score=22.86 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHH-HH
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEE-IN 108 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeE-I~ 108 (152)
.|+++||+..-..+-..|..+-++ |+
T Consensus 19 ~l~~~er~~lv~nia~~l~~v~~~~i~ 45 (68)
T PF06628_consen 19 VLSDEERERLVENIAGHLSGVSDEEIQ 45 (68)
T ss_dssp HSSHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHccCChhhHH
Confidence 479999999999999999998776 76
No 21
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=51.81 E-value=31 Score=30.72 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=35.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCc------cchHHhhHHHh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGF------TVWKEFNDDLT 141 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGi------t~~~elkqn~s 141 (152)
-.|..||-||.+|.--| |.++++++-+|||.--. -.+.|||.+|-
T Consensus 203 vaLl~EmdkVK~EAmei---L~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK 253 (302)
T PF07139_consen 203 VALLAEMDKVKAEAMEI---LDARQKKAEELKRLTDRASQMSEEQLAELRADIK 253 (302)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 48999999999998888 99999999999985322 23667777764
No 22
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.60 E-value=76 Score=21.71 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+|...|+=.|+-|..|.+|++.-.+....|++.+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999998888754
No 23
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=50.22 E-value=97 Score=30.30 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLa 115 (152)
+.||.+|+ +|+.||..+.+.+.-|+.-|.
T Consensus 628 P~LS~AEr-----~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 628 PVLSEAER-----EFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred CCCCHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 56999998 789999999988876665544
No 24
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=49.19 E-value=67 Score=24.76 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
+-|+|++.+.-.+|..|+..++.| |++++..++.....+...
T Consensus 96 ~~see~Q~~~i~~L~~E~~~~~~e---l~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 96 EVSEEEQLKRIKELEEENEEAEEE---LQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 368888887777788888666654 666677777766666654
No 25
>PF14620 YPEB: YpeB sporulation
Probab=49.02 E-value=33 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCc
Q psy5794 80 DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGF 130 (152)
Q Consensus 80 ~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGi 130 (152)
+-..||++|.... ++|......+..+.+.+.+-+.+..-++.++.++++=
T Consensus 108 ~g~~Lt~~e~~tL-~~L~~~s~~l~~~L~~~~~~v~~~~l~w~d~~~~~~~ 157 (361)
T PF14620_consen 108 DGEPLTDEEYKTL-KELYEQSGELNKELQDVQNKVLSGNLRWMDVEKALAS 157 (361)
T ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHhhhh
Confidence 4478999999655 8999999999999999999999999999998887654
No 26
>PF09784 L31: Mitochondrial ribosomal protein L31; InterPro: IPR016340 This group represents a predicted mitochondrial ribosomal protein L31, fungal type [, ].
Probab=47.88 E-value=23 Score=27.11 Aligned_cols=45 Identities=27% Similarity=0.253 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
|--||.-.+ ..+|.-|..|.+=|.+|.+.|..+-..|.-|-+-+.
T Consensus 13 pwRlS~~qK----~r~R~Rlr~VD~vi~~l~~al~~~~~~~~~~~~~~~ 57 (103)
T PF09784_consen 13 PWRLSSPQK----ARQRKRLRAVDSVIDTLYEALKKKGKQCKALERLKF 57 (103)
T ss_pred CCCCChHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 456777665 588999999999999999999887777766655443
No 27
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=47.77 E-value=48 Score=24.14 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. ..+.+|+..|+...
T Consensus 6 ~~lR~~ID~ID~qLv~L---L~~R~~~~~~ia~~K~~~~~~v~ 45 (94)
T TIGR01795 6 KALRQSIDNIDAAVIHM---LAERFKCTSQVGVLKANAGLAPA 45 (94)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCC
Confidence 58999999999999988 666655 45788988887654
No 28
>KOG0930|consensus
Probab=47.28 E-value=78 Score=28.83 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------H----hhhhhHHHHhhhCccchHHhhHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLA--------------S----KTKTAQDLKKKLGFTVWKEFNDDL 140 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLa--------------a----Ke~~~~elKrkLGit~~~elkqn~ 140 (152)
-+|.+||++|+... +..|.--+++=+||+.|+.-++ + +.+.++-=++|+.+.||..|.--+
T Consensus 6 ~ep~~Ls~~E~~eL-~~ir~rk~qL~deIq~Lk~Ei~ev~~eid~~~~~e~skt~q~~k~~~~GRKKFNmDP~Kgiq~l~ 84 (395)
T KOG0930|consen 6 YEPNDLSEEERMEL-ENIRRRKQELLDEIQRLKDEIAEVMEEIDNLESTEESKTKQRNKQVAMGRKKFNMDPKKGIQFLI 84 (395)
T ss_pred CCCCCCCHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHhHHHhhchhhcCCChHHHhHHHH
Confidence 36789999998643 2222222223334443332221 2 233344446788888888876544
Q ss_pred h
Q psy5794 141 T 141 (152)
Q Consensus 141 s 141 (152)
+
T Consensus 85 e 85 (395)
T KOG0930|consen 85 E 85 (395)
T ss_pred H
Confidence 4
No 29
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.09 E-value=1e+02 Score=30.64 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
+-|-..|--+|||..||++.|+.|......-+-.+.
T Consensus 261 ~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a 296 (769)
T PF05911_consen 261 EFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYA 296 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888999999999999999877665554443
No 30
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=46.25 E-value=34 Score=31.49 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
..||-+|. ++|+.|+.++++||..|...|++..+...-++..|
T Consensus 400 ~~LT~~e~----~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL 442 (445)
T cd00187 400 RRLTKLER----EKLLKELKELEAEIEDLEKILASEERPKDLWKEEL 442 (445)
T ss_pred HHhhhhHH----HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 46888887 48999999999999999999988888777777643
No 31
>PF13744 HTH_37: Helix-turn-helix domain; PDB: 2A6C_B 2O38_A.
Probab=46.22 E-value=41 Score=23.12 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccc
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~ 132 (152)
..|++++.+. .++|.+|... |++.+.++.--..++-+.+|++.
T Consensus 3 ~dl~~~~~~~--~~~k~~l~~~------i~~~~~~~~ltQ~e~A~~lgisq 45 (80)
T PF13744_consen 3 ADLGFEEAEE--LEAKAQLMAA------IRELREERGLTQAELAERLGISQ 45 (80)
T ss_dssp ------HHHH--HHHHHHHHHH------HHHHHHCCT--HHHHHHHHTS-H
T ss_pred CcCCHhHHHH--HHHHHHHHHH------HHHHHHHcCCCHHHHHHHHCCCh
Confidence 4566776642 3566666443 66666667777779999999987
No 32
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=46.14 E-value=1.9e+02 Score=27.49 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHhhCcch
Q psy5794 2 EEEINTLKHVLASKTKTAQDLKKKLGFTV 30 (152)
Q Consensus 2 EeEI~tLrqvL~aKe~~~~eLkrkLGit~ 30 (152)
++.|..||+-|...|+.....|++-|+..
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~ 228 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLM 228 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 56788999999999999999999988843
No 33
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=45.81 E-value=32 Score=33.60 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
+..||..|. ++|+.|+..+.++|..|+..|+...+...-|++
T Consensus 421 l~~lt~~e~----~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~ 462 (738)
T TIGR01061 421 LYRLTNTDI----FELKEEQNELEKKIISLEQIIASEKARNKLLKK 462 (738)
T ss_pred HHHHhHHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 356888887 489999999999999999999888776654433
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.69 E-value=96 Score=24.05 Aligned_cols=8 Identities=50% Similarity=0.526 Sum_probs=3.6
Q ss_pred CCCCHHHH
Q psy5794 82 QNLSPEEQ 89 (152)
Q Consensus 82 ~~LseEE~ 89 (152)
+.+|++|-
T Consensus 67 ~~~s~eel 74 (169)
T PF07106_consen 67 EVPSPEEL 74 (169)
T ss_pred CCCCchhH
Confidence 34445443
No 35
>PRK09239 chorismate mutase; Provisional
Probab=45.23 E-value=97 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh---hHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKT---AQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~---~~elKrkLGit~~ 133 (152)
+++|.++..+-.+|..| |+.+... .+.+|...|+..+
T Consensus 13 ~~lR~~ID~ID~eIv~L---La~R~~l~~~Ia~~K~~~~~~i~ 52 (104)
T PRK09239 13 AALRQSIDNIDAALIHM---LAERFKCTQAVGVLKAEHGLPPA 52 (104)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCC
Confidence 78999999999999988 6655544 5688988887654
No 36
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=44.33 E-value=61 Score=22.36 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+++|+..|...+
T Consensus 2 ~~lR~~Id~iD~~i~~L---l~~R~~l~~~i~~~K~~~g~~i~ 41 (83)
T TIGR01791 2 EELRQEIEEIDKSILDL---IEKRIKIARKIGEIKHNNGLPIT 41 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999987 555543 34688888887553
No 37
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.11 E-value=78 Score=25.28 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ 122 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~ 122 (152)
...||+|.++ .+..=..+--.+...||+-|.+|.-.+.
T Consensus 41 ~~~LT~EQQa----~~q~I~~~f~~~t~~LRqqL~aKr~ELn 78 (143)
T PRK11546 41 AAPLTTEQQA----AWQKIHNDFYAQTSALRQQLVSKRYEYN 78 (143)
T ss_pred cccCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999985 4444444446677778888888755443
No 38
>PF14282 FlxA: FlxA-like protein
Probab=43.41 E-value=96 Score=22.88 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
..|++|++..+.+.|..++..++..|..|..-.+.+
T Consensus 42 ~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 42 SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888775554443
No 39
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=43.27 E-value=36 Score=24.21 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhHHHH---HhhCcchh--HHhhHHHhhcccccccccchhhhhhhhhccccccccc
Q psy5794 7 TLKHVLASKTKTAQDLK---KKLGFTVW--KEFNDDLTQSIKNVKETQVRDIHIVILRFVIPGEEAN 68 (152)
Q Consensus 7 tLrqvL~aKe~~~~eLk---rkLGit~~--~elkqniskg~~dv~~s~aY~t~etl~riv~~geda~ 68 (152)
.+.+....+.+++.+|. +.+|-.|- ..+...+.+.|-++.....=....+++.-...||+..
T Consensus 35 ~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~~~ik~~~~~~d~~aiL~~~~~gE~~~ 101 (111)
T PF09537_consen 35 LFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAWMDIKSALGGDDDEAILEECERGEDMA 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TTTHHHHS-----H--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhhh
Confidence 45666778888888887 56888775 6788889999999887443333334555455677654
No 40
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=41.76 E-value=71 Score=22.80 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
.+||++|.... ++|-..-.++++-|+||=..|.+.
T Consensus 34 ~~ls~~d~~~L-~~L~~~a~rm~eRI~tLE~ILd~e 68 (75)
T TIGR02976 34 ASLSTDDQALL-QELYAKADRLEERIDTLERILDAE 68 (75)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47999988544 788888999999999998888764
No 41
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=41.65 E-value=41 Score=33.06 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH-------HHHhhhCc
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ-------DLKKKLGF 130 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~-------elKrkLGi 130 (152)
..||-.|. +.|+.|+.++++||..|...|+.+.+... ++|+++|-
T Consensus 422 ~~Lt~~e~----~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg~ 473 (800)
T TIGR01063 422 QRLTGLER----EKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGD 473 (800)
T ss_pred HHHhHHHH----HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCC
Confidence 45777777 48999999999999999999999876544 56666663
No 42
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=41.31 E-value=43 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHhhhCccc
Q psy5794 106 EINTLKHVLASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 106 EI~TLrqvLaaKe~~~~elKrkLGit~ 132 (152)
+|..|=..|+.-+.++.+||..+||++
T Consensus 46 qiErlG~tLm~Le~~~~~l~~~~gl~~ 72 (88)
T PF05121_consen 46 QIERLGETLMKLEEAMEELCERFGLTP 72 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 333344444445555566677777777
No 43
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=41.27 E-value=37 Score=33.20 Aligned_cols=45 Identities=31% Similarity=0.368 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH-------HHHhhhCc
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ-------DLKKKLGF 130 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~-------elKrkLGi 130 (152)
..||..|. +.|+.|+.+++.||..|...|+...+... ++|+|+|-
T Consensus 432 ~~Lt~le~----~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~ 483 (742)
T PRK05561 432 RRLAKLEE----IEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGD 483 (742)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45777777 48999999999999999999999877654 55666663
No 44
>PRK04325 hypothetical protein; Provisional
Probab=41.11 E-value=1.2e+02 Score=21.25 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+|...++=.|+=|..|-.|++.-.+....|++.|.
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~ 47 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLR 47 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999988753
No 45
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=40.43 E-value=79 Score=29.45 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=50.6
Q ss_pred cccchhhhhhhhhcccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHhh-h
Q psy5794 47 ETQVRDIHIVILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEI------NTLKHVLASKT-K 119 (152)
Q Consensus 47 ~s~aY~t~etl~riv~~geda~~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI------~TLrqvLaaKe-~ 119 (152)
.|+-|++..++..+|+.|--+.-. -+.||.++|++ --.|..+|+|+ +.||++|-... .
T Consensus 257 HSTDYQt~~al~~lv~dgfaiLKV----------GPalTfalreA-----lfaL~~ie~el~~~~~~s~l~~~le~~m~~ 321 (421)
T PRK15052 257 HSTDYQTRQAYRELVRDHFAILKV----------GPALTFALREA-----IFALAQIEQELIAPENRSRCLAVIEEVMLD 321 (421)
T ss_pred cCcccCCHHHHHHHHhcCceeeee----------chhHhHHHHHH-----HHHHHHHHHHhcCccccchHHHHHHHHHHh
Confidence 467788888888877666544321 26899999952 35677889887 56999988887 5
Q ss_pred hhHHHHhhhCccchHHhhHH
Q psy5794 120 TAQDLKKKLGFTVWKEFNDD 139 (152)
Q Consensus 120 ~~~elKrkLGit~~~elkqn 139 (152)
+..-+++ ..-+.-.+++.+
T Consensus 322 ~p~~W~k-~y~g~~~~~~~~ 340 (421)
T PRK15052 322 EPQYWKK-YYRPGFSDALLD 340 (421)
T ss_pred Chhhhhh-hcCCCHHHHHHH
Confidence 5555543 444444444333
No 46
>PF07768 PVL_ORF50: PVL ORF-50-like family; InterPro: IPR011688 This entry is represented by the Bacteriophage 69, Orf58. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of sequences found in both bacteria and bacteriophages. This region is approximately 130 residues long and in some cases is found as part of the PVL (Panton-Valentine leukocidin) group of genes, which encode a member of the leukocidin group of bacterial toxins that kill leukocytes by creation of pores in the cell membrane []. PVL appears to be a virulence factor associated with a number of human diseases [].
Probab=40.01 E-value=1.7e+02 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=17.7
Q ss_pred HHHHHhhCcchhHHhhHHHhhcc
Q psy5794 20 QDLKKKLGFTVWKEFNDDLTQSI 42 (152)
Q Consensus 20 ~eLkrkLGit~~~elkqniskg~ 42 (152)
.|+-.+.|||+ .-+++-+.+||
T Consensus 16 ~E~mek~~It~-~~I~~RvkkGw 37 (118)
T PF07768_consen 16 NEKMEKYGITP-GIIRKRVKKGW 37 (118)
T ss_pred HHHHHHcCCCH-HHHHHHHHcCC
Confidence 47778899998 66888888886
No 47
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=39.92 E-value=59 Score=24.17 Aligned_cols=10 Identities=40% Similarity=0.554 Sum_probs=6.7
Q ss_pred CCCCHHHHHH
Q psy5794 82 QNLSPEEQEK 91 (152)
Q Consensus 82 ~~LseEE~e~ 91 (152)
+.||+||++.
T Consensus 1 s~Lt~eE~~~ 10 (118)
T PF02318_consen 1 SHLTEEEREI 10 (118)
T ss_dssp TTS-CHHHHH
T ss_pred CCCCHHHHHH
Confidence 3799999863
No 48
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=39.74 E-value=92 Score=22.97 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccchH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVWK 134 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~~ 134 (152)
+++|.++..+..+|..| |+.+.. ..+++|++.|.+.+.
T Consensus 7 ~~lR~~ID~ID~eIl~L---L~eR~~~~~~Ig~~K~~~~~~i~d 47 (102)
T TIGR01801 7 EDLRAEVDQLNRQILAL---ISRRGEVVAQIGHAKSAQGPNHYD 47 (102)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCCC
Confidence 58999999999999877 444432 347889988876543
No 49
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=39.62 E-value=1.9e+02 Score=23.05 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=21.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLK 111 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLr 111 (152)
..+..||++=.+ .|+.||..+.++|..-|
T Consensus 26 ~~~~~lT~~G~~----~L~~El~~L~~~i~~Ar 54 (160)
T PRK06342 26 PHPNLVTEAGLK----ALEDQLAQARAAYEAAQ 54 (160)
T ss_pred CCCceECHHHHH----HHHHHHHHHHHHHHHHH
Confidence 455679999884 88888888887777654
No 50
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.41 E-value=1e+02 Score=27.65 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 88 EQEKQKAEWTQELARV-----EEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 88 E~e~~~eelr~EL~kv-----EeEI~TLrqvLaaKe~~~~elKr 126 (152)
+|+.+-++||.+|+.. |||-+.+---||-||.|- |||+
T Consensus 86 dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARk-EIkQ 128 (305)
T PF15290_consen 86 DRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARK-EIKQ 128 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3455556777777775 566666666677777664 6664
No 51
>PRK07248 hypothetical protein; Provisional
Probab=38.21 E-value=1e+02 Score=21.56 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+.+|+..|...+
T Consensus 4 ~~lR~~ID~iD~~i~~L---l~~R~~l~~~I~~~K~~~~~~v~ 43 (87)
T PRK07248 4 EEIRQEIDQIDDQLVAL---LEKRMALVEQVVAYKKATGKPVL 43 (87)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 58899999999999987 554443 34688988887654
No 52
>KOG3335|consensus
Probab=37.67 E-value=75 Score=26.53 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC--ccchHHhhHH
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG--FTVWKEFNDD 139 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG--it~~~elkqn 139 (152)
+...+|.+.++.+||+..+.++|.+|..++++ +.+|..+|+ .+.+.+++|+
T Consensus 97 e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~-------~~~L~~~l~~~~~el~~~~q~ 149 (181)
T KOG3335|consen 97 ERKKEEKRKQEIMELRLKVEKLENAIAELTKF-------FSQLHSKLNKPESELKPIRQA 149 (181)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHcCccccccccccC
Confidence 45668888888888888888888877766554 455544443 2344445544
No 53
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=37.50 E-value=1e+02 Score=21.00 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=28.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhh--hCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKK--LGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrk--LGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+.+|+. .|.+.+
T Consensus 2 ~~lR~~ID~iD~~iv~L---l~~R~~~~~~i~~~K~~~~~~~~i~ 43 (76)
T TIGR01807 2 EELRNKIDAIDDRILDL---LSERATYAQAVGELKGSGASGASFY 43 (76)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCCCCcC
Confidence 47899999999999988 555543 45688888 777644
No 54
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=37.22 E-value=1.8e+02 Score=23.17 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchHHhhHHHh
Q psy5794 80 DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 141 (152)
Q Consensus 80 ~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~elkqn~s 141 (152)
.|++.|+++-++. +..-+.+...-+....|...+..| .+-+. |.+=-+|+++|++||+
T Consensus 26 ~p~tysp~~l~~i-~~~~~~i~~~~~r~~eLk~lI~kk--~W~~v-rn~irgp~g~Lr~dl~ 83 (142)
T TIGR03042 26 VPPTYSPAQLAQI-QRQAEGIEAAKDRLPELASLVAKE--DWVFT-RNLIHGPMGEVRREMT 83 (142)
T ss_pred CCCCCCHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhhc--chHHH-HHHHhccHHHHHHHHH
Confidence 3678999887422 333333444445555555555444 23332 2344467777777765
No 55
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.01 E-value=72 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q psy5794 93 KAEWTQELARVEEEINTLKHVL 114 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvL 114 (152)
-.+|+.++.+++.|+.-|+.++
T Consensus 80 i~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998888887665
No 56
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.12 E-value=1.1e+02 Score=21.96 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
..|...+..++.+|..|-.-+...++.+.++|.+|
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777788888888763
No 57
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.82 E-value=91 Score=21.46 Aligned_cols=28 Identities=32% Similarity=0.270 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 86 PEEQEKQKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 86 eEE~e~~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
-++|. +-|+.|+..++.+|..=+.+.+|
T Consensus 26 L~~RI---a~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 26 LEERI---ALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35675 78999999999998866555444
No 58
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=35.74 E-value=58 Score=24.23 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHhhCcchh
Q psy5794 2 EEEINTLKHVLASKTKTAQDLKKKLGFTVW 31 (152)
Q Consensus 2 EeEI~tLrqvL~aKe~~~~eLkrkLGit~~ 31 (152)
++||..|=..|+.=+.++.+||..+|+++=
T Consensus 44 e~qiErlG~tLm~Le~~~~~l~~~~gl~~~ 73 (88)
T PF05121_consen 44 EEQIERLGETLMKLEEAMEELCERFGLTPE 73 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 689999999999999999999999999983
No 59
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.70 E-value=58 Score=32.04 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhH-------HHHhhhCc
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQ-------DLKKKLGF 130 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~-------elKrkLGi 130 (152)
.+++.|+..++.||..|+..|++..+... ++|.++|-
T Consensus 427 ~~i~~E~~~l~~e~~~l~~~L~~~~~~~~~i~~el~~~~~~~g~ 470 (735)
T TIGR01062 427 HAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGL 470 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999988754 55666663
No 60
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=35.55 E-value=1e+02 Score=21.28 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+-+.. +.+.+|...|.+.+
T Consensus 2 ~~lR~~Id~iD~~i~~L---l~~R~~~~~~i~~~K~~~~~~i~ 41 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVL---FEERMEVVKEIAAYKKKNGIPIF 41 (81)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999977 554443 34688888887654
No 61
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.73 E-value=80 Score=22.35 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
.-|.||+ ..++..+|+.|.+.|+||..
T Consensus 51 ~~s~eeq-------~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 51 DRSVEEQ-------EEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred cCCHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4456655 56777778888888887753
No 62
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.65 E-value=25 Score=28.65 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH
Q psy5794 84 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ 122 (152)
Q Consensus 84 LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~ 122 (152)
|-|+|- .+||.|+.++..+.+|+..|||=|..+++...
T Consensus 18 lLE~EL-dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 18 LLESEL-DEKENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHH-HHHHHHHHCH----------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 335555 45789999999999999999999988877653
No 63
>KOG4571|consensus
Probab=34.19 E-value=87 Score=27.91 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
++||.....+|.||.-|||.+..+
T Consensus 265 ~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 265 EELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666677777777766554
No 64
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=33.71 E-value=28 Score=23.83 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=18.9
Q ss_pred HHHhhhCccchHHhhHHHhhchh
Q psy5794 123 DLKKKLGFTVWKEFNDDLTQSIK 145 (152)
Q Consensus 123 elKrkLGit~~~elkqn~skg~~ 145 (152)
-+=+|||+.-+.+||..+.+...
T Consensus 53 Rf~kkLG~~gf~efk~~l~~~~~ 75 (77)
T PF01418_consen 53 RFCKKLGFSGFKEFKIALAQELS 75 (77)
T ss_dssp HHHHHCTTTCHHHHHHHHHCHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh
Confidence 44588999999999999987643
No 65
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=33.39 E-value=1.2e+02 Score=21.17 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+-+.. +.+.+|.+.|+..+
T Consensus 2 ~~lR~~ID~ID~~il~L---l~~R~~~~~~ia~~K~~~~~~v~ 41 (83)
T TIGR01799 2 EDLRGEIDGVDQELLHL---LAKRLELVAQVGKVKHAAGLPIY 41 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCC
Confidence 47899999999999877 554443 34688988887554
No 66
>PRK07857 hypothetical protein; Provisional
Probab=33.22 E-value=2.2e+02 Score=21.66 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=29.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh---hhhHHHHhhhCccchH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKT---KTAQDLKKKLGFTVWK 134 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe---~~~~elKrkLGit~~~ 134 (152)
+++|.++..+..+|..| |+.+. .+.+.+|++.|...+.
T Consensus 31 ~~lR~eID~ID~eIl~L---L~eR~~la~eIg~~K~~~g~pI~d 71 (106)
T PRK07857 31 DELREEIDRLDAEILAL---VKRRTEVSQAIGKARMASGGTRLV 71 (106)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCccC
Confidence 48999999999999877 54444 3456889988887653
No 67
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=33.10 E-value=1.6e+02 Score=23.79 Aligned_cols=34 Identities=24% Similarity=0.471 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
++.+..+..+.++|..++.-+..+.++..+++..
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~ 99 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEELRES 99 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555544
No 68
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.90 E-value=29 Score=23.25 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHV 113 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqv 113 (152)
+.++.-.+.+|+|.++||.+
T Consensus 14 e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred chheeeHHHHHHHHHHHHHH
Confidence 36788888889999999876
No 69
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.87 E-value=1.3e+02 Score=22.64 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLK 125 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elK 125 (152)
.+||..|.=||+|..-||+-|+-=+.+-..|.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~ 35 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLT 35 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999998887665544333
No 70
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.40 E-value=1.7e+02 Score=25.29 Aligned_cols=43 Identities=33% Similarity=0.409 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
++..+.++- +.+|.+|+....+|..+|+-|...+.+...++.+
T Consensus 203 ~~~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~ 245 (325)
T PF08317_consen 203 IESCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEK 245 (325)
T ss_pred hhhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566665 5888888888888888888888887777777765
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.14 E-value=1.8e+02 Score=20.27 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
.+|...++=.|+=|..|-.|++.-.+....|++++
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l 45 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999988888888874
No 72
>PRK04406 hypothetical protein; Provisional
Probab=31.46 E-value=1.9e+02 Score=20.40 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
.+|..-++=.|+=|..|-.|++.-.+....|+++|
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql 48 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQM 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999998888888874
No 73
>PRK01631 hypothetical protein; Provisional
Probab=31.31 E-value=1.3e+02 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||++|.. ++++||.+-
T Consensus 18 ~gLT~eE~~-Eq~~LR~eY 35 (76)
T PRK01631 18 TGLTVDEKQ-EQQMLRQNY 35 (76)
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999985 446777664
No 74
>PRK02119 hypothetical protein; Provisional
Probab=31.23 E-value=1.9e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+|..-++=.|+=|..|-.|++.-.+....|++.|.
T Consensus 12 ~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 12 AELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888999999999999999999999988888754
No 75
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.21 E-value=4.1e+02 Score=27.26 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhh--Ccchh-HHhhHHHhhcccccccccchh-hhhhhhhcccccccccccCCC-CCCC-
Q psy5794 4 EINTLKHVLASKTKTAQDLKKKL--GFTVW-KEFNDDLTQSIKNVKETQVRD-IHIVILRFVIPGEEANNLDLS-PDSG- 77 (152)
Q Consensus 4 EI~tLrqvL~aKe~~~~eLkrkL--Git~~-~elkqniskg~~dv~~s~aY~-t~etl~riv~~geda~~~~~s-~~~~- 77 (152)
+...+++-+..-+.++.+|.+.| +=.+| .=|++| ..||.+- --+ +.+.++.- ++-++.-...+ +++.
T Consensus 512 ~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~-~p~We~t----IGKVid~eLL~r--~dL~P~l~~~~~~dsly 584 (1201)
T PF12128_consen 512 ELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN-KPGWEQT----IGKVIDEELLYR--TDLEPQLVEDSGSDSLY 584 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC-CCcHHHH----hHhhCCHHHhcC--CCCCCeecCCCcccccc
Confidence 34445555555566677888877 33444 567666 8888752 333 34443331 33333321111 1110
Q ss_pred --CCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q psy5794 78 --INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDL 124 (152)
Q Consensus 78 --~~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~el 124 (152)
.=++..|...+..+..++|+.++..++..|+.+..-...-+++...+
T Consensus 585 Gl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~ 633 (1201)
T PF12128_consen 585 GLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQI 633 (1201)
T ss_pred eeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222222222222223666667666666666655555555554443
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.88 E-value=1.4e+02 Score=22.07 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh---hhhhHH-HHhhhCccchHH
Q psy5794 91 KQKAEWTQELARVEEEINTLKHVLASK---TKTAQD-LKKKLGFTVWKE 135 (152)
Q Consensus 91 ~~~eelr~EL~kvEeEI~TLrqvLaaK---e~~~~e-lKrkLGit~~~e 135 (152)
++.++++.++.+++.+-..|+.=+..= .....+ .+++||+.-=+|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gE 82 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGE 82 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCC
Confidence 334555555555554444443322211 112222 355788765443
No 77
>PRK02539 hypothetical protein; Provisional
Probab=30.81 E-value=1.3e+02 Score=22.36 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||+||.. ++++||.+-
T Consensus 19 ~gLT~eEk~-Eq~~LR~eY 36 (85)
T PRK02539 19 EGLTGEEKV-EQAKLREEY 36 (85)
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999985 446777654
No 78
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=30.76 E-value=77 Score=32.14 Aligned_cols=45 Identities=27% Similarity=0.431 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH-------HHHhhhC
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ-------DLKKKLG 129 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~-------elKrkLG 129 (152)
+.-||--|+ +.|+.|+..+.++|..|...|+.+.+... ++|+++|
T Consensus 440 L~~Lt~le~----~kl~~E~~eL~~~I~~l~~iL~~~~~l~~vi~~EL~eik~kyg 491 (957)
T PRK13979 440 LYRLTGLEI----VAFEKEYKELEKLIKKLTKILSSEKELLKVIKKELKEVKEKYG 491 (957)
T ss_pred HHhhhhhHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 345666676 48899999999999999999999987765 4555555
No 79
>PF08178 GnsAB: GnsA/GnsB family; InterPro: IPR012563 This family consists of the GnsA/GnsB family. GnsA and GnsB are multicopy suppressors of the secG null mutation. These proteins participate in the synthesis of phospholipids, suggesting the functional relationship between SecG and membrane phospholipids. Over expression of gnsA and gnsB causes a remarkable increase in the unsaturated fatty acid content. However, the gnsA-gnsB double null mutant exhibits no effect. Both proteins are predicted to possess a helix-turn-helix structure [].
Probab=30.52 E-value=51 Score=22.62 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 101 ARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 101 ~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+.|++|..| +.- ...||++++|
T Consensus 8 kk~EeeI~~l---I~k---Ki~ELrk~~G 30 (54)
T PF08178_consen 8 KKAEEEISAL---ITK---KIAELRKKTG 30 (54)
T ss_pred HHHHHHHHHH---HHH---HHHHhccccC
Confidence 3569999988 443 4678898887
No 80
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=30.48 E-value=1.8e+02 Score=19.80 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHH
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQD 123 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~e 123 (152)
-+||++.+. +++.-..+.-.++..+|+-+..+...+..
T Consensus 40 l~Lt~eQ~~----~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ 77 (125)
T PF13801_consen 40 LNLTPEQQA----KLRALMDEFRQEMRALRQELRAARQELRA 77 (125)
T ss_dssp S-TTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999985 66666665556666677776666554443
No 81
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.22 E-value=1.2e+02 Score=21.16 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 95 EWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
.||......|..|..|+.-+...+.....|++
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 82
>PRK05560 DNA gyrase subunit A; Validated
Probab=30.19 E-value=76 Score=31.20 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh-------hhHHHHhhhCc
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTK-------TAQDLKKKLGF 130 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~-------~~~elKrkLGi 130 (152)
..||-.|. ..|+.|+.++.+||..|...|+...+ .+.++|+++|-
T Consensus 425 ~~LT~~e~----~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~ 476 (805)
T PRK05560 425 QRLTGLER----DKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGD 476 (805)
T ss_pred HHHhHHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46787777 48899999999999999999999755 44566777773
No 83
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.68 E-value=1.7e+02 Score=19.23 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHh---hhhhHH-HHhhhCccc
Q psy5794 94 AEWTQELARVEEEINTLKHVLASK---TKTAQD-LKKKLGFTV 132 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaK---e~~~~e-lKrkLGit~ 132 (152)
.+++.++.++..++..|.+-+..- ..+..+ .+.+||+..
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~ 69 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVK 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcC
Confidence 455555555555555544433322 122222 244787754
No 84
>PTZ00421 coronin; Provisional
Probab=29.49 E-value=1.2e+02 Score=27.94 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLASKTKTAQDL 124 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~el 124 (152)
+-.+|-.+|.+-++||+++|..|..||..+.+-
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (493)
T PTZ00421 454 RLQALSEKLRTQHEEIKRCREALQKKESIVMET 486 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335777788888999999999999999887653
No 85
>PRK01546 hypothetical protein; Provisional
Probab=28.96 E-value=1.5e+02 Score=21.67 Aligned_cols=19 Identities=21% Similarity=0.407 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy5794 81 LQNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL 100 (152)
..+||++|.. ++++||.+-
T Consensus 19 ~~gLT~eEk~-Eq~~LR~eY 37 (79)
T PRK01546 19 AEGLTEEEQR-ERQSLREQY 37 (79)
T ss_pred ccCCCHHHHH-HHHHHHHHH
Confidence 3799999985 446777654
No 86
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.75 E-value=2e+02 Score=25.08 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHHhhhhhHHHHHhhCcchhH
Q psy5794 1 VEEEINTLKHVLASKTKTAQDLKKKLGFTVWK 32 (152)
Q Consensus 1 vEeEI~tLrqvL~aKe~~~~eLkrkLGit~~~ 32 (152)
++++|..+++=|.+-+......+++-|+....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 36788899999999999999999999997653
No 87
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=28.72 E-value=31 Score=25.94 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=15.0
Q ss_pred hhhHHHHhhhCccchHHh
Q psy5794 119 KTAQDLKKKLGFTVWKEF 136 (152)
Q Consensus 119 ~~~~elKrkLGit~~~el 136 (152)
-+...||++.||+||+-|
T Consensus 9 ~~L~~Lk~~Tgi~~~Nil 26 (105)
T TIGR03184 9 DQLRRLKRRTGLTPWNIL 26 (105)
T ss_pred HHHHHHhcccCCCcchHH
Confidence 456689999999998876
No 88
>PRK02224 chromosome segregation protein; Provisional
Probab=28.14 E-value=3.7e+02 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.386 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhC
Q psy5794 4 EINTLKHVLASKTKTAQDLKKKLG 27 (152)
Q Consensus 4 EI~tLrqvL~aKe~~~~eLkrkLG 27 (152)
.|.+++.-+...+..+.+++..|.
T Consensus 378 ~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 378 AVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666666665554
No 89
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=28.08 E-value=57 Score=22.89 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||+||.+ ++++||.+-
T Consensus 17 ~gLT~eE~~-Eq~~LR~eY 34 (65)
T PF05979_consen 17 EGLTEEEKA-EQAELRQEY 34 (65)
T ss_dssp T---HHHHH-HHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHHH
Confidence 689999985 446666553
No 90
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=27.58 E-value=68 Score=23.40 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=23.6
Q ss_pred hhhhHHHHhhhCccchHHhhHHHhhch
Q psy5794 118 TKTAQDLKKKLGFTVWKEFNDDLTQSI 144 (152)
Q Consensus 118 e~~~~elKrkLGit~~~elkqn~skg~ 144 (152)
.+|..-|++|||...-.+|-.-+.+||
T Consensus 170 ~~~~~~l~~Kl~~~~~~~l~~~~~~~~ 196 (196)
T PRK10360 170 HVHRANLMEKLGVSNDVELARRMFDGW 196 (196)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhcC
Confidence 467788999999999999988888888
No 91
>PRK06285 chorismate mutase; Provisional
Probab=26.95 E-value=1.9e+02 Score=20.75 Aligned_cols=37 Identities=30% Similarity=0.579 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
++||.++..+..+|..| |+-+.. ..+.+|...|...+
T Consensus 10 ~elR~~ID~ID~~iv~L---l~~R~~l~~~I~~~K~~~~~~v~ 49 (96)
T PRK06285 10 NEIRKRIDEIDEQIIDL---IAERTSLAKEIAELKKSLGMPIF 49 (96)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999987 555543 34677888776543
No 92
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.92 E-value=1.5e+02 Score=19.86 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
+.+.|..++.+++.+|..+..-|..
T Consensus 5 E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 5 EIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3468999999999999999887764
No 93
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=26.81 E-value=4e+02 Score=23.80 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHhhCcc
Q psy5794 2 EEEINTLKHVLASKTKTAQDLKKKLGFT 29 (152)
Q Consensus 2 EeEI~tLrqvL~aKe~~~~eLkrkLGit 29 (152)
+.++..+++-|...+....+.+++-|+.
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~~~~ 194 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQENGGI 194 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 5678889999999999999999888864
No 94
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=26.54 E-value=1.8e+02 Score=20.11 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+.+|+..|...+
T Consensus 2 ~~lR~~ID~ID~~lv~L---l~~R~~~~~~ia~~K~~~~~~v~ 41 (82)
T TIGR01803 2 ADIREAIDRIDLALVQA---LGRRMDYVKRASEFKRSHEAAIP 41 (82)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCC
Confidence 47899999999999987 555544 34678887776554
No 95
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.27 E-value=2.4e+02 Score=22.09 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHh--------hhhhHHHHHhhCcchhHHhhHHHhhcccccccccchhhhhhhhhcc
Q psy5794 2 EEEINTLKHVLASK--------TKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRDIHIVILRFV 61 (152)
Q Consensus 2 EeEI~tLrqvL~aK--------e~~~~eLkrkLGit~~~elkqniskg~~dv~~s~aY~t~etl~riv 61 (152)
..||.++.+--... =+++.+.|..|+..-|.. |..-.....+.|...+|++.
T Consensus 7 a~EIn~~~~q~~~~~l~~~iEIGrrL~eaK~~l~HGef~~--------Wle~~~~~s~rtA~~~M~va 66 (130)
T PF11300_consen 7 AAEINAIKRQTGQILLESAIEIGRRLKEAKELLPHGEFGK--------WLEEEVGYSQRTAQRFMQVA 66 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--------HHHHHcCcCHHHHHHHHHHH
Confidence 46787775543222 245556666666655533 33333333344666677743
No 96
>PHA02557 22 prohead core protein; Provisional
Probab=26.22 E-value=3.1e+02 Score=24.29 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 86 PEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 86 eEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
++|+.-.-++|..+|...|.++.+|..-+.+-..+...++|.
T Consensus 136 pee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~ 177 (271)
T PHA02557 136 PEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKRE 177 (271)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444557899999999999999988888888888888886
No 97
>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1. This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.
Probab=26.10 E-value=2.1e+02 Score=19.95 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhh---hHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKT---AQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~---~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+-+..- .+.+|.+.|++.+
T Consensus 2 ~~lR~~ID~ID~~lv~L---l~~R~~~~~~i~~~K~~~~~~v~ 41 (83)
T TIGR01797 2 LALREKISAIDEKLLKL---LAERRELAFEVGKSKLLSHRPVR 41 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999877 5544433 3678888887654
No 98
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=25.98 E-value=1.3e+02 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHHHhHHHHHHHHHHH-HHHhhhhhHHHHhhhCccc
Q psy5794 95 EWTQELARVEEEINTLKHV-LASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqv-LaaKe~~~~elKrkLGit~ 132 (152)
+|...+.+++.+|...+.- ..+....+.++=..+|||+
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~Gis~ 40 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYGISP 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT--H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 5666666677666654432 2223333344446788885
No 99
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.94 E-value=1.8e+02 Score=20.34 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
.+++..+.+++.+|..|+..|.
T Consensus 50 ~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 50 KELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444555555544443
No 100
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=25.90 E-value=2.1e+02 Score=19.74 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccchH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVWK 134 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~~ 134 (152)
+.||.++..+..+|..| |+.+.. ..+.+|+..|...+.
T Consensus 3 ~~lR~~ID~ID~~ii~L---L~~R~~~~~~i~~~K~~~~~~i~d 43 (74)
T TIGR01808 3 DTLREEIDRLDAEILAL---VKRRAEISQAIGKARMASGGTRLV 43 (74)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCCCCC
Confidence 47899999999999987 554433 346889888876543
No 101
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.72 E-value=1.2e+02 Score=28.31 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=43.2
Q ss_pred cccchhhhhhhhhcccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHh-hh
Q psy5794 47 ETQVRDIHIVILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEI------NTLKHVLASK-TK 119 (152)
Q Consensus 47 ~s~aY~t~etl~riv~~geda~~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI------~TLrqvLaaK-e~ 119 (152)
.|+-|++..++..+|+.|--+.-. -+.||.++|++ --.|..+|+|+ +.||++|-.. ..
T Consensus 258 HSTDYQt~~al~~lv~dgfaiLKV----------GPalTfalreA-----lfaL~~ie~el~~~~~~s~l~~~le~~M~~ 322 (420)
T TIGR02810 258 HSTDYQTPAALRALVRDHFAILKV----------GPALTFALREA-----LFALDQIEDELVPAPARSGLRAVIERVMLA 322 (420)
T ss_pred CCccCCCHHHHHHHHhcCceeeee----------chhHhHHHHHH-----HHHHHHHHHHhcCccccchHHHHHHHHHHh
Confidence 488899999988877666544321 26899999953 35677788886 5688888776 33
Q ss_pred hhHHH
Q psy5794 120 TAQDL 124 (152)
Q Consensus 120 ~~~el 124 (152)
+..-+
T Consensus 323 ~p~~W 327 (420)
T TIGR02810 323 EPGYW 327 (420)
T ss_pred Cchhh
Confidence 33333
No 102
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.52 E-value=98 Score=24.29 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHhhCcchhHHhhHHHhh
Q psy5794 2 EEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQ 40 (152)
Q Consensus 2 EeEI~tLrqvL~aKe~~~~eLkrkLGit~~~elkqnisk 40 (152)
||||..||.++..+..--++|++ +++.||..
T Consensus 50 eeei~~ir~~i~~~~~vegDLr~--------~v~~dIkR 80 (121)
T COG0099 50 EEEIERLRDAIQNKYLVEGDLRR--------EVRMDIKR 80 (121)
T ss_pred HHHHHHHHHHHHhcCeehhHHHH--------HHHHHHHH
Confidence 89999999999987777777777 35666654
No 103
>KOG4643|consensus
Probab=24.37 E-value=2.3e+02 Score=29.74 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=64.8
Q ss_pred cchhHHhhHHHhhcccccccccchhhhhhhhhcccccccccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhHHHH
Q psy5794 28 FTVWKEFNDDLTQSIKNVKETQVRDIHIVILRFVIPGEEANNLDLSPD-SGINDLQNLSPEEQEKQKAEWTQELARVEEE 106 (152)
Q Consensus 28 it~~~elkqniskg~~dv~~s~aY~t~etl~riv~~geda~~~~~s~~-~~~~~~~~LseEE~e~~~eelr~EL~kvEeE 106 (152)
|-++-..+....+.|-|-++-...++-+-.+- ..|..-..-.++.+ ....+|..+.-.+. -.|..+|+-.|.-
T Consensus 112 ir~llk~r~~~~k~~id~~qe~se~i~e~~le--~vGl~~~~~~s~s~~~~~~sp~~~~~~~~----~hL~velAdle~k 185 (1195)
T KOG4643|consen 112 IRLLLKDRKKKWKSVIDDLQEASEKIAEKLLE--LVGLEKKYRESRSGKELYKSPYDIVVKKN----LHLEVELADLEKK 185 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccceeeccccCCCCCCCcchhhcchh----HHHHHHHHHHHHH
Confidence 33444556666777776666555554222221 24444332222222 12233444544444 4899999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhCcc--chHHhhHHHhhchhh
Q psy5794 107 INTLKHVLASKTKTAQDLKKKLGFT--VWKEFNDDLTQSIKN 146 (152)
Q Consensus 107 I~TLrqvLaaKe~~~~elKrkLGit--~~~elkqn~skg~~~ 146 (152)
|.+|||=|-.|--..-+++..|-.- -+..|+|++..+.++
T Consensus 186 ir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~e 227 (1195)
T KOG4643|consen 186 IRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDE 227 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877666666544321 234567776655443
No 104
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=24.23 E-value=95 Score=25.45 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=15.5
Q ss_pred HHHhhhhhHHHHhhhCccch
Q psy5794 114 LASKTKTAQDLKKKLGFTVW 133 (152)
Q Consensus 114 LaaKe~~~~elKrkLGit~~ 133 (152)
+.+...-+++|-|+||++|+
T Consensus 117 v~~Gn~Sl~~lsr~l~~sp~ 136 (160)
T PF09824_consen 117 VEAGNTSLSDLSRKLGISPV 136 (160)
T ss_pred HHcCCCcHHHHHHHhCCCHH
Confidence 33456677899999999995
No 105
>PRK00846 hypothetical protein; Provisional
Probab=23.86 E-value=2.8e+02 Score=19.92 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 87 EEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 87 EE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
++-++.-.+|...++=-|+=|..|-++++.-.+....|++++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~ 51 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 51 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444788888999999999999999999888888988753
No 106
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.43 E-value=49 Score=25.01 Aligned_cols=18 Identities=28% Similarity=0.665 Sum_probs=14.6
Q ss_pred hhhHHHHhhhCccchHHh
Q psy5794 119 KTAQDLKKKLGFTVWKEF 136 (152)
Q Consensus 119 ~~~~elKrkLGit~~~el 136 (152)
-+...||++.||+||+-+
T Consensus 10 ~~L~~Lk~~tgi~~~Nil 27 (113)
T PF08870_consen 10 EQLKKLKRRTGITPWNIL 27 (113)
T ss_pred HHHHHHHHhcCCCcccHH
Confidence 456789999999998654
No 107
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=23.25 E-value=1.4e+02 Score=27.85 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=42.5
Q ss_pred cccchhhhhhhhhcccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHhhhh
Q psy5794 47 ETQVRDIHIVILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEEI------NTLKHVLASKTKT 120 (152)
Q Consensus 47 ~s~aY~t~etl~riv~~geda~~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEeEI------~TLrqvLaaKe~~ 120 (152)
.|+-|++..++..+|+.|--..-. -+.||+++|++ --.|..+|+|+ +.||+||-.....
T Consensus 262 HSTDYQt~~al~~lv~dgfaiLKV----------GPaLTfalReA-----lfaL~~ie~el~~~~~~s~l~~~le~~ml~ 326 (426)
T PRK15458 262 HSTDYQTPQALRQLVIDHFAILKV----------GPALTFALREA-----LFSLAAIEEELVPAKACSGLRQVLEDVMLD 326 (426)
T ss_pred CCccCCCHHHHHHHHhcCceeeee----------chhHhHHHHHH-----HHHHHHHHHHhcCccccchHHHHHHHHHHh
Confidence 488899999988877666544321 26899999953 35677888887 5788888777655
No 108
>PF13907 DUF4208: Domain of unknown function (DUF4208)
Probab=23.08 E-value=2.6e+02 Score=20.28 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
.+|+.+|+. ..++.+|.++=++|...-+-.... ....|+..|
T Consensus 37 ~~l~~~e~a---~~lk~~L~~IG~~I~~~l~~~~~~--~~~~l~~~L 78 (100)
T PF13907_consen 37 KGLPRKERA---KILKKELLKIGDFIDSILKEYKDD--EPEKLRKHL 78 (100)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHHHHHhcccc--hHHHHHHHH
Confidence 488889886 899999999999999764332222 334555443
No 109
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.90 E-value=1.5e+02 Score=28.28 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccchHHhhHHHh
Q psy5794 80 DLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 141 (152)
Q Consensus 80 ~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~~~elkqn~s 141 (152)
-|..||+-|+ .+...|..+|+|-.-= ..+++|-..+.+|+| .-|.++++-+.
T Consensus 78 ~pDPLsPgE~-----~l~~Kl~eLE~e~k~d----~v~~khn~~I~~k~g-~~L~~v~~~~~ 129 (508)
T PF00901_consen 78 PPDPLSPGEQ-----GLQRKLKELEDEQKED----EVREKHNKKIIEKFG-NDLEKVYKFMK 129 (508)
T ss_pred CCCCCCHhHH-----HHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3567999998 7788888888765421 125678888888888 34555555443
No 110
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.62 E-value=1.7e+02 Score=21.44 Aligned_cols=34 Identities=38% Similarity=0.549 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
..||+|.|... |+|..+|+..|...|++..-|++
T Consensus 31 ~eLs~e~R~~l-----------E~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 31 RELSPEARRSL-----------EKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred cCCChHHHHHH-----------HHHHHHHHHHhhccHHHHHHHHH
Confidence 47888877422 45556666666666666666554
No 111
>KOG4196|consensus
Probab=22.60 E-value=3.1e+02 Score=21.97 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q psy5794 91 KQKAEWTQELARVEEEINTLKHVL 114 (152)
Q Consensus 91 ~~~eelr~EL~kvEeEI~TLrqvL 114 (152)
.++.+|..++.++-+|+..++.=+
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444433
No 112
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.40 E-value=2.9e+02 Score=19.57 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q psy5794 85 SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKT 120 (152)
Q Consensus 85 seEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~ 120 (152)
+.+|......+|+..|..++..+..|.+++..=++.
T Consensus 33 ~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 33 SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566666677899999999999999999998876665
No 113
>KOG4196|consensus
Probab=22.24 E-value=3.3e+02 Score=21.86 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 89 QEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 89 ~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
|..++.+|..+=+.+..+|.+|++-++.-.+...-+|-|+
T Consensus 72 Rv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 72 RVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888899999988887777777777653
No 114
>PRK06443 chorismate mutase; Validated
Probab=22.22 E-value=2e+02 Score=23.86 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh---hhhHHHHhhhCccchHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKT---KTAQDLKKKLGFTVWKE 135 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe---~~~~elKrkLGit~~~e 135 (152)
++||.++.++..+|-.| |+.+. .+.+++|++.|...+..
T Consensus 8 eeLR~eID~ID~eIL~L---L~kRm~la~eIg~~K~~~g~pI~Dp 49 (177)
T PRK06443 8 EDLRSEILENTMDIIEL---IEKRRELARMIGIIKMRNGLSIRDS 49 (177)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCCh
Confidence 58899999999999877 44443 34568899888766543
No 115
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.07 E-value=1.8e+02 Score=24.50 Aligned_cols=42 Identities=31% Similarity=0.463 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
..+.+|+ +.|..++...+.+|.-|.+....|+..+..|+.+|
T Consensus 71 ~~~~eEk----~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 71 EMQEEEK----EQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666 48899999999999999999999999988888764
No 116
>PRK09039 hypothetical protein; Validated
Probab=21.72 E-value=2.3e+02 Score=24.96 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC------ccchHHhhHHHhhc
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG------FTVWKEFNDDLTQS 143 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG------it~~~elkqn~skg 143 (152)
+.||..|+.++.+|....+-......+..+|+++|- +..|..++.+|-..
T Consensus 147 ~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~ 202 (343)
T PRK09039 147 AALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGR 202 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555555555555554444555555555554432 23344555555333
No 117
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=21.24 E-value=98 Score=25.15 Aligned_cols=53 Identities=21% Similarity=0.159 Sum_probs=35.6
Q ss_pred HHHHHhhCcchhHHhhHHHhhcccccccccchh----hhhhhhhcccccccccccCCCCCCCCCC
Q psy5794 20 QDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRD----IHIVILRFVIPGEEANNLDLSPDSGIND 80 (152)
Q Consensus 20 ~eLkrkLGit~~~elkqniskg~~dv~~s~aY~----t~etl~riv~~geda~~~~~s~~~~~~~ 80 (152)
.-|||+|||.. + .+|.|..-.-+-|. -.+.+.|++..+.|+ ...+.|+-+..+
T Consensus 62 ~alK~~~gIp~--e-----~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~pd~-~GlavPgmp~gs 118 (149)
T COG3019 62 LALKRRLGIPY--E-----MQSCHTAVINGYYVEGHVPAEAIARLLAEKPDA-KGLAVPGMPVGS 118 (149)
T ss_pred HHHHHhcCCCh--h-----hccccEEEEcCEEEeccCCHHHHHHHHhCCCCc-ceecCCCCcCCC
Confidence 45888899877 3 35778888888887 345588887666666 455566544433
No 118
>PRK14163 heat shock protein GrpE; Provisional
Probab=21.19 E-value=4.2e+02 Score=22.40 Aligned_cols=21 Identities=24% Similarity=0.242 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVL 114 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvL 114 (152)
++++.+|..++.++..|+.-+
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~ 63 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADL 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777766655444
No 119
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.17 E-value=3.3e+02 Score=19.78 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 84 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 84 LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.+-+|. .+-+...+..+++.+..|.+.|..+..+...+...
T Consensus 82 ~~~~eA---~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 82 KDAEEA---IEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred ecHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 37888888888888888888888888887776654
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=21.12 E-value=1.8e+02 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=17.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARV 103 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kv 103 (152)
+..++||+||+|.++|.|=.-..++
T Consensus 402 ~~~~~mt~eeke~ea~~l~~lf~rl 426 (446)
T PF10165_consen 402 NPMPEMTEEEKEREAERLFVLFDRL 426 (446)
T ss_pred CCccccchhHHHHHHHHHHHHHHHH
Confidence 6677899999986666654444333
No 121
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.04 E-value=2.4e+02 Score=19.89 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 104 EEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 104 EeEI~TLrqvLaaKe~~~~elKrk 127 (152)
+++|..|++=+..|..-.+.+|.+
T Consensus 58 ~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 58 EEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888888877777777666653
No 122
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.71 E-value=4.3e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHhhhhhHHHHhhhCccchHHhhHHHh
Q psy5794 110 LKHVLASKTKTAQDLKKKLGFTVWKEFNDDLT 141 (152)
Q Consensus 110 LrqvLaaKe~~~~elKrkLGit~~~elkqn~s 141 (152)
+|.....-+.+..++..|+... ++.||-.|.
T Consensus 118 ~r~e~~~~~~ki~e~~~ki~~e-i~~lr~~iE 148 (177)
T PF07798_consen 118 IREEQAKQELKIQELNNKIDTE-IANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4444555555555666555444 344554443
No 123
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.29 E-value=2.8e+02 Score=18.62 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKT 118 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe 118 (152)
+..||.+|-.+.-+.|-.+ .|.||.-||+--.+|.
T Consensus 5 Lk~ls~~eL~~rl~~LD~~---ME~Eieelr~RY~~KR 39 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDPE---MEQEIEELRQRYQAKR 39 (49)
T ss_dssp GGGS-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCHH---HHHHHHHHHHHHHHhh
Confidence 3467777765333333333 4899999998877774
No 124
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=20.28 E-value=3.7e+02 Score=19.88 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhHHHHHhhCcch
Q psy5794 7 TLKHVLASKTKTAQDLKKKLGFTV 30 (152)
Q Consensus 7 tLrqvL~aKe~~~~eLkrkLGit~ 30 (152)
.||+....+.--..+|-+.+|+++
T Consensus 9 rlk~~R~~~gltq~~lA~~~gvs~ 32 (135)
T PRK09706 9 RIRYRRKQLKLSQRSLAKAVKVSH 32 (135)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCH
Confidence 455555444444568888999985
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.17 E-value=2.3e+02 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
....++|-. .+|.+|+++..+|...++-|..++.+..+++.++
T Consensus 199 ~~~d~~eL~----~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 199 EDCDPTELD----RAKEKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HhCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677764 7778888888888888888888888777776553
Done!