Query psy5794
Match_columns 152
No_of_seqs 164 out of 202
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:08:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5794.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5794hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zet_C Melanophilin; complex, 71.4 8.1 0.00028 29.5 5.6 15 77-91 10-24 (153)
2 1ykh_B RNA polymerase II holoe 70.8 6.7 0.00023 29.2 4.9 42 84-128 85-126 (132)
3 1t2k_D Cyclic-AMP-dependent tr 70.7 5.9 0.0002 25.5 4.1 23 94-116 39-61 (61)
4 1use_A VAsp, vasodilator-stimu 69.8 14 0.00047 23.6 5.5 33 83-115 3-40 (45)
5 1yke_B RNA polymerase II holoe 67.5 8.1 0.00028 29.6 4.9 47 79-128 78-126 (151)
6 1ci6_A Transcription factor AT 67.4 10 0.00034 24.8 4.7 23 93-115 39-61 (63)
7 4dyl_A Tyrosine-protein kinase 64.7 8.8 0.0003 32.6 5.0 36 93-128 304-339 (406)
8 2oqq_A Transcription factor HY 62.3 10 0.00034 23.9 3.7 22 94-115 20-41 (42)
9 2l5g_B Putative uncharacterize 60.0 20 0.00069 22.5 4.8 30 83-112 1-30 (42)
10 1hjb_A Ccaat/enhancer binding 58.8 17 0.00058 25.6 4.9 26 91-116 50-75 (87)
11 2nov_A DNA topoisomerase 4 sub 58.5 11 0.00037 34.2 4.7 45 81-129 424-475 (496)
12 2wt7_A Proto-oncogene protein 57.9 22 0.00075 23.0 5.0 23 94-116 40-62 (63)
13 3a7o_A Autophagy protein 16; c 57.3 23 0.00078 24.7 5.2 36 92-127 19-54 (75)
14 3viq_A SWI5-dependent recombin 55.9 17 0.00058 27.0 4.7 27 93-119 9-35 (122)
15 1jnm_A Proto-oncogene C-JUN; B 55.7 7.5 0.00026 25.1 2.4 22 94-115 39-60 (62)
16 3t97_B Nuclear pore complex pr 54.1 18 0.00061 24.5 4.1 32 97-128 9-40 (65)
17 3efg_A Protein SLYX homolog; x 51.6 35 0.0012 23.3 5.4 38 92-129 15-52 (78)
18 1l8d_A DNA double-strand break 48.7 62 0.0021 22.2 6.7 46 83-128 56-101 (112)
19 1gu4_A CAAT/enhancer binding p 48.0 19 0.00063 24.9 3.5 23 93-115 52-74 (78)
20 2inr_A DNA topoisomerase 4 sub 45.8 20 0.00068 32.6 4.3 40 82-125 449-488 (514)
21 3ilw_A DNA gyrase subunit A; D 45.3 30 0.001 31.1 5.3 42 81-126 410-451 (470)
22 3lay_A Zinc resistance-associa 44.4 46 0.0016 25.9 5.7 39 82-124 66-104 (175)
23 1g6u_A Domain swapped dimer; d 42.5 61 0.0021 20.5 5.0 8 82-89 15-22 (48)
24 3bhp_A UPF0291 protein YNZC; N 41.9 44 0.0015 22.2 4.5 18 82-100 20-37 (60)
25 1zvu_A Topoisomerase IV subuni 41.8 34 0.0012 32.3 5.3 42 81-126 396-437 (716)
26 2ve7_A Kinetochore protein HEC 41.6 55 0.0019 27.2 6.2 19 95-113 189-207 (315)
27 2zqm_A Prefoldin beta subunit 40.3 62 0.0021 22.1 5.3 34 94-127 73-106 (117)
28 2jvd_A UPF0291 protein YNZC; s 40.1 22 0.00077 23.3 2.8 18 82-100 20-37 (54)
29 3m48_A General control protein 40.0 45 0.0015 19.9 3.9 22 94-115 10-31 (33)
30 3lpx_A GYRA, DNA gyrase, A sub 39.3 39 0.0013 30.7 5.1 35 93-127 441-475 (500)
31 1fxk_A Prefoldin; archaeal pro 39.1 68 0.0023 21.6 5.3 35 94-128 68-102 (107)
32 1kd8_B GABH BLL, GCN4 acid bas 39.0 64 0.0022 19.6 4.5 23 94-116 11-33 (36)
33 1uo4_A General control protein 35.9 56 0.0019 19.6 3.9 22 94-115 11-32 (34)
34 2xcs_B DNA gyrase subunit B, D 35.5 35 0.0012 32.1 4.3 41 82-126 632-672 (692)
35 4etp_A Kinesin-like protein KA 34.7 50 0.0017 28.3 4.9 45 95-140 14-61 (403)
36 3ra3_B P2F; coiled coil domain 33.4 40 0.0014 19.2 2.8 19 93-111 9-27 (28)
37 1bb1_B Designed, thermostable 32.8 67 0.0023 19.2 3.8 23 94-116 5-27 (36)
38 3tnu_A Keratin, type I cytoske 31.2 1E+02 0.0034 22.3 5.4 36 94-129 41-76 (131)
39 2yy0_A C-MYC-binding protein; 29.4 1E+02 0.0035 19.5 4.6 29 94-129 22-50 (53)
40 1no1_A G39P, replisome organiz 27.1 13 0.00046 27.9 0.0 90 35-132 26-122 (126)
41 3hnw_A Uncharacterized protein 26.7 1.4E+02 0.0049 22.1 5.7 34 94-127 78-111 (138)
42 2r2v_A GCN4 leucine zipper; co 26.6 1.1E+02 0.0037 18.4 4.1 23 94-116 11-33 (34)
43 2zjr_V 50S ribosomal protein L 26.6 67 0.0023 21.1 3.5 23 79-101 4-26 (67)
44 1t3j_A Mitofusin 1; coiled coi 26.5 1.1E+02 0.0039 21.9 4.9 32 94-129 50-81 (96)
45 3q8g_A CRAL-TRIO domain-contai 26.5 95 0.0032 25.3 5.1 66 66-132 17-96 (320)
46 2wt7_B Transcription factor MA 25.9 1.8E+02 0.006 20.5 6.0 34 94-127 51-84 (90)
47 3kin_B Kinesin heavy chain; mo 25.8 1.1E+02 0.0036 22.0 4.7 30 95-124 86-115 (117)
48 2dgc_A Protein (GCN4); basic d 25.4 95 0.0033 20.1 4.0 21 94-114 40-60 (63)
49 2hep_A UPF0291 protein YNZC; S 25.2 49 0.0017 23.4 2.7 18 82-100 20-37 (85)
50 1m7s_A Catalase; beta barrel, 24.7 1.1E+02 0.0039 27.3 5.6 61 83-145 421-483 (484)
51 2d8d_A Aroag, phospho-2-dehydr 24.7 1.4E+02 0.0047 19.9 4.9 37 94-133 6-45 (90)
52 1zbd_B Rabphilin-3A; G protein 24.4 1.2E+02 0.0041 22.4 4.9 28 79-106 5-34 (134)
53 1ic8_A Hepatocyte nuclear fact 24.1 1.5E+02 0.0053 23.0 5.7 51 78-132 2-57 (194)
54 3r8s_Y 50S ribosomal protein L 23.9 47 0.0016 21.7 2.3 22 79-100 4-25 (63)
55 2l2l_A Transcriptional repress 22.4 1.5E+02 0.0051 18.5 5.3 32 85-121 2-33 (43)
56 2wq1_A General control protein 22.2 1.3E+02 0.0046 17.9 4.2 22 94-115 10-31 (33)
57 3mq7_A Bone marrow stromal ant 22.1 2.1E+02 0.0073 21.4 5.8 31 97-127 70-100 (121)
58 3a7p_A Autophagy protein 16; c 22.0 1.9E+02 0.0065 22.4 5.7 36 92-127 69-104 (152)
59 2vkl_A RV0948C/MT0975; helical 21.8 1.7E+02 0.0057 20.0 4.9 37 94-133 15-54 (90)
60 3iwf_A Transcription regulator 21.6 44 0.0015 23.4 1.9 23 21-43 54-76 (107)
61 3rmi_A Chorismate mutase prote 21.5 1.4E+02 0.0048 21.2 4.6 37 94-133 15-54 (114)
62 1zme_C Proline utilization tra 21.3 77 0.0026 19.6 2.9 22 94-115 47-68 (70)
63 3pbf_A Pulmonary surfactant-as 20.9 1.1E+02 0.0037 21.0 3.8 24 94-117 5-28 (148)
64 4dnd_A Syntaxin-10, SYN10; str 20.9 1.7E+02 0.0059 21.4 5.1 42 87-132 63-104 (130)
65 3c3f_A Alpha/beta peptide with 20.8 1.5E+02 0.005 17.8 4.2 22 94-115 11-32 (34)
66 1lwu_C Fibrinogen gamma chain; 20.5 1.7E+02 0.006 24.7 5.7 33 95-127 16-48 (323)
67 1ecm_A Endo-oxabicyclic transi 20.3 1.8E+02 0.0061 20.0 4.9 37 94-133 8-47 (109)
68 3na7_A HP0958; flagellar bioge 20.3 2E+02 0.0067 22.7 5.7 34 94-127 28-61 (256)
69 2ke4_A CDC42-interacting prote 20.2 2.3E+02 0.0078 19.9 5.5 32 78-112 5-36 (98)
70 3qh9_A Liprin-beta-2; coiled-c 20.2 2.3E+02 0.0079 19.8 6.3 31 96-126 45-75 (81)
No 1
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=71.41 E-value=8.1 Score=29.53 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=11.6
Q ss_pred CCCCCCCCCHHHHHH
Q psy5794 77 GINDLQNLSPEEQEK 91 (152)
Q Consensus 77 ~~~~~~~LseEE~e~ 91 (152)
-..+++.||+||++.
T Consensus 10 ~~~dLs~LteeEr~~ 24 (153)
T 2zet_C 10 KRLDLSTLTDEEAEH 24 (153)
T ss_dssp -CCCCTTSCHHHHHH
T ss_pred cCCCcccCCHHHHHH
Confidence 346889999999963
No 2
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=70.76 E-value=6.7 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 84 LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 84 LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
-|+|++.+.-.+|..|+..++. .|++++..+++-...+..-|
T Consensus 85 ~see~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 85 VSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4899998888888888876665 46677777877777766544
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.74 E-value=5.9 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaa 116 (152)
.+|+.++..+.+|+..|++.|.|
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57777788888888888777653
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=69.80 E-value=14 Score=23.60 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=21.5
Q ss_pred CCCHHHHHHHH----HHHHHHHHhHHHHHH-HHHHHHH
Q psy5794 83 NLSPEEQEKQK----AEWTQELARVEEEIN-TLKHVLA 115 (152)
Q Consensus 83 ~LseEE~e~~~----eelr~EL~kvEeEI~-TLrqvLa 115 (152)
+.+..+-+..+ +|.|.||.|+.+||- .+|+-|.
T Consensus 3 ~~~~~dle~~KqEIL~E~RkElqK~K~EIIeAi~~El~ 40 (45)
T 1use_A 3 SSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELR 40 (45)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443 467899999988875 6766554
No 5
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=67.45 E-value=8.1 Score=29.56 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=33.4
Q ss_pred CCCCCC--CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 79 NDLQNL--SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 79 ~~~~~L--seEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
.+++++ |+|++.+.-.+|..|+..++. .|++++..+++-...+..-|
T Consensus 78 dsLPg~~~seeeQ~~ri~~Le~E~~~~~~---el~~~v~eae~ll~~v~~~l 126 (151)
T 1yke_B 78 DSLPGVDVSAEEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLLRHVDSLI 126 (151)
T ss_dssp HHCTTSSSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444 899998888888888876665 46677777877777766544
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.37 E-value=10 Score=24.85 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy5794 93 KAEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLa 115 (152)
-.+|+.++..++.|+..|++.|.
T Consensus 39 N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 39 NEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777777777777777777653
No 7
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=64.71 E-value=8.8 Score=32.61 Aligned_cols=36 Identities=14% Similarity=0.281 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 93 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
+.-|+.-|++++++|..+++-+.+|++....|++.+
T Consensus 304 ~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~ 339 (406)
T 4dyl_A 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQEL 339 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998865
No 8
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=62.34 E-value=10 Score=23.93 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
.||.+-++.++.|=++|||||.
T Consensus 20 aeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 20 SELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhc
Confidence 3455555556666677888874
No 9
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=60.00 E-value=20 Score=22.53 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKH 112 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrq 112 (152)
++|-||--+.-+..-.|++|+|+.|..|+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667778888888888887753
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=58.76 E-value=17 Score=25.58 Aligned_cols=26 Identities=12% Similarity=0.405 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 91 KQKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 91 ~~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
++-+.|+.++..++.|+.+||+.|..
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888889999999988775
No 11
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=58.48 E-value=11 Score=34.15 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhH-------HHHhhhC
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQ-------DLKKKLG 129 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~-------elKrkLG 129 (152)
+-.||-+|+ +++..|+.+++.+|..|+..|+...+... ++|.|+|
T Consensus 424 L~rLt~~e~----~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~ 475 (496)
T 2nov_A 424 LYRLTNTDV----VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA 475 (496)
T ss_dssp GGGGSSHHH----HHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhC
Confidence 346777777 48999999999999999999999755443 5555555
No 12
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.94 E-value=22 Score=23.01 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaa 116 (152)
.+|+.++..+.+|+..|+++|.+
T Consensus 40 ~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 40 SALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777653
No 13
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=57.25 E-value=23 Score=24.70 Aligned_cols=36 Identities=36% Similarity=0.434 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.-..||++|.--|.||..|+.+++-|-+-.--|-..
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDE 54 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDE 54 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHH
Confidence 457999999999999999999999998887766554
No 14
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=55.91 E-value=17 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhh
Q psy5794 93 KAEWTQELARVEEEINTLKHVLASKTK 119 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLaaKe~ 119 (152)
+.+|..++..+++++.+|+|++..+.+
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~ 35 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAK 35 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999765543
No 15
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=55.75 E-value=7.5 Score=25.13 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
.+|+.++..+.+|+..|++.|.
T Consensus 39 ~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 39 SELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 16
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=54.06 E-value=18 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 97 TQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 97 r~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
+.-|.++++||.-|++=.++=...+++.||||
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl 40 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKL 40 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999988888778888999883
No 17
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.62 E-value=35 Score=23.33 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.-.+|...|+=.|+-|..|.++++.-.+....|++++.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999988754
No 18
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=48.71 E-value=62 Score=22.17 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
.++++.....-++...++..+..+|..|+.-+..-++....|..++
T Consensus 56 ~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 56 ELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544334456666777777777777766666666666666554
No 19
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.02 E-value=19 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.436 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy5794 93 KAEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLa 115 (152)
-..|+.++..++.|+.+||+.|.
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777776653
No 20
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=45.85 E-value=20 Score=32.58 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLK 125 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elK 125 (152)
-.||-+|+ +++..|+.+++.+|..|+..|+...+...-++
T Consensus 449 ~rLT~~e~----~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~ 488 (514)
T 2inr_A 449 YRLTNTDI----VALEGEHKELEALIKQLRHILDNHDALLNVIK 488 (514)
T ss_dssp GGGSTTHH----HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhhHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46677777 48899999999999999999998865444333
No 21
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=45.35 E-value=30 Score=31.11 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
+..||-.|++ .++.|+.+++++|..|+..|+...+...-++.
T Consensus 410 L~rLt~le~~----kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~ 451 (470)
T 3ilw_A 410 LRRLAALERQ----RIIDDLAKIEAEIADLEDILAKPERQRGIVRD 451 (470)
T ss_dssp GGGGSHHHHH----HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhhHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4578888874 88999999999999999999998776554443
No 22
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.35 E-value=46 Score=25.87 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDL 124 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~el 124 (152)
-+||+|.+.+ ++.-..+--.++..||+-+.+|...+..|
T Consensus 66 LnLT~EQq~q----l~~I~~e~r~~~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 66 SPLTTEQQAT----AQKIYDDYYTQTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp --CCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799998853 33333333455555666666665544443
No 23
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.47 E-value=61 Score=20.46 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=4.5
Q ss_pred CCCCHHHH
Q psy5794 82 QNLSPEEQ 89 (152)
Q Consensus 82 ~~LseEE~ 89 (152)
++.|+||-
T Consensus 15 egfspeel 22 (48)
T 1g6u_A 15 EGFSPEEL 22 (48)
T ss_dssp TTCSHHHH
T ss_pred cCCCHHHH
Confidence 45666654
No 24
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=41.92 E-value=44 Score=22.22 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||+||++ +++.||.|-
T Consensus 20 ~gLT~eEk~-EQ~~LR~eY 37 (60)
T 3bhp_A 20 GVITEEEKA-EQQKLRQEY 37 (60)
T ss_dssp TCCCHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999985 346666654
No 25
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=41.81 E-value=34 Score=32.30 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 81 LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 81 ~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
+-.||-.|+ ++++.|...++.+|..|...|++..+...-+|.
T Consensus 396 L~rLt~le~----~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~ 437 (716)
T 1zvu_A 396 LRHLAKLEE----MKIRGEQSELEKERDQLQGILASERKMNNLLKK 437 (716)
T ss_dssp GGGGSHHHH----HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhhhhHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456788887 489999999999999999999999777654444
No 26
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=41.62 E-value=55 Score=27.17 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q psy5794 95 EWTQELARVEEEINTLKHV 113 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqv 113 (152)
.|..+...+++||..|++.
T Consensus 189 ~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 189 SLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444555444443
No 27
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.25 E-value=62 Score=22.12 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
+.|......++.+|..|-.-+...+..+.+++.+
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777778888888888888888888888888765
No 28
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=40.09 E-value=22 Score=23.28 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||+||++ ++..||.+-
T Consensus 20 ~gLT~eEk~-EQ~~LR~eY 37 (54)
T 2jvd_A 20 GVITEEEKA-EQQKLRQEY 37 (54)
T ss_dssp TCCCHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 699999985 336666553
No 29
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.00 E-value=45 Score=19.94 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
|+|-.+-+.+|.|+..||..|.
T Consensus 10 EeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 10 EELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 7899999999999999988764
No 30
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=39.31 E-value=39 Score=30.73 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=30.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 93 KAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
++++..|+..+..+|..|...|++..+...-+|..
T Consensus 441 ~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~e 475 (500)
T 3lpx_A 441 HDKILSEYKALLDLIAELMHILATPARLMEVICEE 475 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46899999999999999999999998887766554
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.08 E-value=68 Score=21.61 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKL 128 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkL 128 (152)
+.|......++.+|.+|-.-+...+..+.+++.+|
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888888888888888764
No 32
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.98 E-value=64 Score=19.61 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaa 116 (152)
|||..+...+|.|...||..|+.
T Consensus 11 EeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 11 EELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhcc
Confidence 78999999999999999887754
No 33
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=35.91 E-value=56 Score=19.63 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
|+|-.+...+|+|+..||..|.
T Consensus 11 EeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 11 EEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHHc
Confidence 7888999999999999987764
No 34
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=35.46 E-value=35 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 82 QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
-.||-.|+ ++++.|..+++.+|..|...|+...+...-++.
T Consensus 632 ~rLt~le~----~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~ 672 (692)
T 2xcs_B 632 RRLTGLER----DKIEAEYNELLNYISELETILADEEVLLQLVRD 672 (692)
T ss_dssp GGGSTTHH----HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHhhhHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45677777 488999999999999999999998776554444
No 35
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.72 E-value=50 Score=28.35 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=19.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHH---HhhhhhHHHHhhhCccchHHhhHHH
Q psy5794 95 EWTQELARVEEEINTLKHVLA---SKTKTAQDLKKKLGFTVWKEFNDDL 140 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqvLa---aKe~~~~elKrkLGit~~~elkqn~ 140 (152)
+++++..+++++|..+..-+. .+......++|+| ...+.+||-||
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l-~n~~~elkgnI 61 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL-HNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCe
Confidence 444444444444443332222 2222223445555 55556665554
No 36
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.40 E-value=40 Score=19.21 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=15.2
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy5794 93 KAEWTQELARVEEEINTLK 111 (152)
Q Consensus 93 ~eelr~EL~kvEeEI~TLr 111 (152)
-..|+.|++-+|-||..|-
T Consensus 9 narlkqeiaaleyeiaale 27 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 3578899999999988764
No 37
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=32.76 E-value=67 Score=19.20 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=16.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaa 116 (152)
...+.|-+-+|+||+.++.-+++
T Consensus 5 aaikeeqaaieeeiqaikeeiaa 27 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAA 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888888666554
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.18 E-value=1e+02 Score=22.29 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+++..+..++-||+.|+..-++-+....+....+.
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378888888899998888777777777766665443
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.44 E-value=1e+02 Score=19.53 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
+.|+.|+..+...+..|. .+..+++++|.
T Consensus 22 eaLk~E~~eLk~k~~~L~-------~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIV-------EENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 467777777777776663 45667777764
No 40
>1no1_A G39P, replisome organizer, gene 39; helical, bipartite, natively unfolded domain, replication; 2.40A {Bacillus phage SPP1} SCOP: a.179.1.1
Probab=27.07 E-value=13 Score=27.85 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=24.0
Q ss_pred hHHHhhcccccccccchh-hhhhhhhcccccccccccCCCCCCCC------CCCCCCCHHHHHHHHHHHHHHHHhHHHHH
Q psy5794 35 NDDLTQSIKNVKETQVRD-IHIVILRFVIPGEEANNLDLSPDSGI------NDLQNLSPEEQEKQKAEWTQELARVEEEI 107 (152)
Q Consensus 35 kqniskg~~dv~~s~aY~-t~etl~riv~~geda~~~~~s~~~~~------~~~~~LseEE~e~~~eelr~EL~kvEeEI 107 (152)
.+..-.-|+++-....|. +..++.+++.++. ++ .+++.++ ..+...+.+|-...-.+|+.. |+-.
T Consensus 26 ~~~~ve~W~~lL~d~~ye~v~~Al~~hI~~~~--yP--PsiadI~r~~~~i~~~~~p~~~E~~~~~~~~~~~----~~~~ 97 (126)
T 1no1_A 26 LKGTVKAWHRVLAEYELEEIMNNLTDYAKVNK--FP--PTVSDLLKAQSEQRDRFIPSYEETQRILKEQAEA----EEAA 97 (126)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCS--SC--CCGGGGCC----------------------------------
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC--CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHhHH----HHhh
Confidence 456667799999988888 7777777543321 21 2222322 222222222211100233311 1101
Q ss_pred HHHHHHHHHhhhhhHHHHhhhCccc
Q psy5794 108 NTLKHVLASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 108 ~TLrqvLaaKe~~~~elKrkLGit~ 132 (152)
.-=-.+-++.++++.+++++|||.-
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~ 122 (126)
T 1no1_A 98 RNDPDLQAAQEENMRKIREMLGINR 122 (126)
T ss_dssp -------------------------
T ss_pred ccCHHHHHHHHHHHHHHHHHhCccc
Confidence 1111123677899999999999963
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.66 E-value=1.4e+02 Score=22.10 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=23.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
++|..++...+.||..|++=|.+......++++.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777777777766666555554
No 42
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=26.64 E-value=1.1e+02 Score=18.37 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaa 116 (152)
|||-.+..-++.|...||..|..
T Consensus 11 Eel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 11 EEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHHhcC
Confidence 78888888889999888887753
No 43
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=26.64 E-value=67 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELA 101 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~ 101 (152)
.++-.+|.+|...+-.+++.||.
T Consensus 4 ~elr~~s~~EL~~~l~elk~ELf 26 (67)
T 2zjr_V 4 SEMRNLQATDFAKEIDARKKELM 26 (67)
T ss_dssp TTTTTSCHHHHHHHHHTHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 46788998876544444444443
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.53 E-value=1.1e+02 Score=21.91 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhC
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLG 129 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLG 129 (152)
.+|..|++.++.+|..|=.+ .+++.-||-|-+
T Consensus 50 ~eL~~EI~~L~~eI~~LE~i----qs~aK~LRnKA~ 81 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKM----QNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHH
Confidence 58888888888888887555 344555565533
No 45
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=26.52 E-value=95 Score=25.27 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=40.1
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHhh----------hhhHHHHhhhCcc
Q psy5794 66 EANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVE----EEINTLKHVLASKT----------KTAQDLKKKLGFT 131 (152)
Q Consensus 66 da~~~~~s~~~~~~~~~~LseEE~e~~~eelr~EL~kvE----eEI~TLrqvLaaKe----------~~~~elKrkLGit 131 (152)
|.+++..+|+....-+..||++++++. +++|..|.+.- -.=.+|..+|.|+. +.+-.+|+..|+.
T Consensus 17 ~~~~~~~~~~~~~g~~~~lt~~q~~~l-~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd 95 (320)
T 3q8g_A 17 DTYPQICSPNALPGTPGNLTKEQEEAL-LQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGAN 95 (320)
T ss_dssp GGSCCSCCTTSCTTSTTCCCHHHHHHH-HHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGG
T ss_pred hcCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcc
Confidence 445555556555566789999998644 78888886531 00136666776642 2333567777765
Q ss_pred c
Q psy5794 132 V 132 (152)
Q Consensus 132 ~ 132 (152)
.
T Consensus 96 ~ 96 (320)
T 3q8g_A 96 T 96 (320)
T ss_dssp G
T ss_pred c
Confidence 4
No 46
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.86 E-value=1.8e+02 Score=20.55 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.+|..+...+-.++..|++-++.=.+....+|+|
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444445555554
No 47
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=25.76 E-value=1.1e+02 Score=22.02 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=20.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q psy5794 95 EWTQELARVEEEINTLKHVLASKTKTAQDL 124 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqvLaaKe~~~~el 124 (152)
+|..++.+..+++..|+..++..+.....+
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666777778887777776655444
No 48
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.45 E-value=95 Score=20.14 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVL 114 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvL 114 (152)
++|..+-..++.+|..||+-|
T Consensus 40 ~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 40 EELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 49
>2hep_A UPF0291 protein YNZC; SR384, structure, autostructure, northeast structural genomics consortium, PSI-1, protein structure initiative, NESG; NMR {Bacillus subtilis} SCOP: a.2.21.1
Probab=25.17 E-value=49 Score=23.44 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||+||.+ ++..||.|-
T Consensus 20 ~GLT~eEk~-EQ~~LR~eY 37 (85)
T 2hep_A 20 GVITEEEKA-EQQKLRQEY 37 (85)
T ss_dssp HCCCHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHH-HHHHHHHHH
Confidence 589999985 446777664
No 50
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=24.66 E-value=1.1e+02 Score=27.30 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHhhhhhHHHHhhhCccchHHhhHHHhhchh
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEIN--TLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIK 145 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~--TLrqvLaaKe~~~~elKrkLGit~~~elkqn~skg~~ 145 (152)
.|+++||+..-..+..+|.++..+|+ .+.+.-.+-.-...-+...||+.. . --.+++.+++
T Consensus 421 ~~~~~~~~~l~~n~~~~l~~~~~~i~~~~~~~~~~~d~~~~~~v~~~~~~~~-~-~~~~~~~~~~ 483 (484)
T 1m7s_A 421 SYSAKEKTDLVQKFGESLADTLTESKNIMLSYLYKEDPNYGTRVAEVAKGDL-S-KVKSLAASLK 483 (484)
T ss_dssp HSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCHHHHHHHHHHTTCCH-H-HHHHHHHTCC
T ss_pred hCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCHHHHHHHHHHhCCCh-H-HHHHHhhhhc
Confidence 58999999999999999999988886 444444444455556777888754 2 2244555543
No 51
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=24.66 E-value=1.4e+02 Score=19.87 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+.+|...|+..+
T Consensus 6 ~~lR~~ID~iD~~l~~L---l~~R~~~~~~i~~~K~~~~~~i~ 45 (90)
T 2d8d_A 6 QALRKEVDRVNREILRL---LSERGRLVQEIGRLQTELGLPHY 45 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 58999999999999887 555443 45678888887554
No 52
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=24.42 E-value=1.2e+02 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHHH--HHHHHhHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEW--TQELARVEEE 106 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eel--r~EL~kvEeE 106 (152)
.+++.||+||++.-.+=| ..+|.+.|++
T Consensus 5 ~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ 34 (134)
T 1zbd_B 5 RKQEELTDEEKEIINRVIARAEKMETMEQE 34 (134)
T ss_dssp ---CCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHhhHHHHHHhHHH
Confidence 467899999996332222 2345555554
No 53
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=24.09 E-value=1.5e+02 Score=23.05 Aligned_cols=51 Identities=20% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHhhhhhHHHHhhhCccc
Q psy5794 78 INDLQNLSPEEQEKQKAEWTQELARV-----EEEINTLKHVLASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 78 ~~~~~~LseEE~e~~~eelr~EL~kv-----EeEI~TLrqvLaaKe~~~~elKrkLGit~ 132 (152)
+.++..|++||-. +.+.++... -+.+..|+..|..+---..++-+.+||+.
T Consensus 2 ~~~~~~~~~~~~~----~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSq 57 (194)
T 1ic8_A 2 LKELENLSPEEAA----HQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQ 57 (194)
T ss_dssp -CCCCSCCHHHHH----HHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCH
T ss_pred hHHHhhcCCchhH----HHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCCh
Confidence 4578899999864 334333322 23334566666656555667788888876
No 54
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=23.88 E-value=47 Score=21.66 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=12.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL 100 (152)
.++-.+|.+|...+-.+++.||
T Consensus 4 ~elr~~s~~EL~~~l~elk~El 25 (63)
T 3r8s_Y 4 KELREKSVEELNTELLNLLREQ 25 (63)
T ss_dssp GGTTSCHHHHHHHHHHHHTHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 3567788876644444444444
No 55
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=22.44 E-value=1.5e+02 Score=18.54 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q psy5794 85 SPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTA 121 (152)
Q Consensus 85 seEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~ 121 (152)
|++|+++.-..||.||.--|.-. ||..|.+++
T Consensus 2 s~~ere~~i~~LreeLR~EEaKL-----vLLKKlrqS 33 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKL-----VLLKKLRQS 33 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 67888887788888885444322 444454544
No 56
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.21 E-value=1.3e+02 Score=17.86 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
|||-.+-..+|.|+..||..|.
T Consensus 10 Eell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 10 EENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhc
Confidence 7888888888999998887763
No 57
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.10 E-value=2.1e+02 Score=21.40 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=24.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 97 TQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 97 r~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
...+.+++.||.+|.|-|.-.......|++.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777899999999988888777777775
No 58
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.02 E-value=1.9e+02 Score=22.36 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.-+.|+.|++.++.+|.-|...|..|.+-...++..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999998888877765
No 59
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=21.76 E-value=1.7e+02 Score=19.95 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+++|...|...+
T Consensus 15 ~~lR~~ID~iD~~Ll~L---L~~R~~~~~~Ig~~K~~~~~~i~ 54 (90)
T 2vkl_A 15 DTLREEIDRLDAEILAL---VKRRAEVSKAIGKARMASGGTRL 54 (90)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCC
Confidence 58999999999999987 655543 45678888887554
No 60
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.62 E-value=44 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.4
Q ss_pred HHHHhhCcchhHHhhHHHhhccc
Q psy5794 21 DLKKKLGFTVWKEFNDDLTQSIK 43 (152)
Q Consensus 21 eLkrkLGit~~~elkqniskg~~ 43 (152)
.+-||||+.-+.++|..+.+...
T Consensus 54 Rf~kkLGf~gf~efk~~l~~~~~ 76 (107)
T 3iwf_A 54 RLSKKVTPGGFNELKTRLSKFLP 76 (107)
T ss_dssp HHHHHHSTTHHHHHHHHHHTTSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Confidence 45589999999999999998643
No 61
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=21.46 E-value=1.4e+02 Score=21.23 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=28.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh---hhhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKT---KTAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe---~~~~elKrkLGit~~ 133 (152)
++||.++..+..+|..| |+.+. ++.+.+|+..|+..+
T Consensus 15 ~~lR~~ID~ID~~il~L---L~~R~~~~~~I~~~K~~~~~~i~ 54 (114)
T 3rmi_A 15 AYLRQSIDNFDITLIHI---LAERFRCTQAIGRLKARYNLPAV 54 (114)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCCc
Confidence 69999999999999987 55444 345688988887654
No 62
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.25 E-value=77 Score=19.56 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
+.|...+..+|..+..|+..|+
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888877653
No 63
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.91 E-value=1.1e+02 Score=21.03 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASK 117 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaK 117 (152)
++|+.++..++.+|..++..|.-+
T Consensus 5 e~l~~~~~~l~~~l~~~~~~~~~~ 28 (148)
T 3pbf_A 5 EELQTELYEIKHQILQTMGVLSLQ 28 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999998887443
No 64
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.87 E-value=1.7e+02 Score=21.42 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhhhCccc
Q psy5794 87 EEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTV 132 (152)
Q Consensus 87 EE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrkLGit~ 132 (152)
+|....+.||+..|.-+|..+..|.+++..=++.. .|+||++
T Consensus 63 ~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np----~kF~l~~ 104 (130)
T 4dnd_A 63 EELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP----GKFKLPA 104 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----HhcCCCH
Confidence 45555668999999999999999998887665543 2456664
No 65
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.75 E-value=1.5e+02 Score=17.78 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLA 115 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLa 115 (152)
|+|-.+...+|.|+..||..|.
T Consensus 11 EeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 11 EXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 7888888888999988887764
No 66
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.53 E-value=1.7e+02 Score=24.69 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=23.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 95 EWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 95 elr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.+..-+...+..|..|+..|..-..+..+|+.+
T Consensus 16 ~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~ 48 (323)
T 1lwu_C 16 ILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666778888888877777777777665
No 67
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.32 E-value=1.8e+02 Score=19.99 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
+++|.++..+..+|..| |+.+.. +.+.+|...|...+
T Consensus 8 ~~lR~~ID~iD~~L~~L---L~~R~~~~~~v~~~K~~~~~~i~ 47 (109)
T 1ecm_A 8 LALREKISALDEKLLAL---LAERRELAVEVGKAKLLSHRPVR 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCC
Confidence 58999999999999887 555543 34578888776543
No 68
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.27 E-value=2e+02 Score=22.66 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHhh
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKrk 127 (152)
.++..+|..+++++..|+.-+.+......++++.
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~ 61 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQ 61 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666655543
No 69
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.19 E-value=2.3e+02 Score=19.94 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=25.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy5794 78 INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKH 112 (152)
Q Consensus 78 ~~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrq 112 (152)
..+++.|.+|.|. .-|+..|..++.+|+.-.+
T Consensus 5 ~~d~s~LPpeqRk---kkL~~Ki~el~~ei~ke~~ 36 (98)
T 2ke4_A 5 TEDFSHLPPEQQR---KRLQQQLEERSRELQKEVD 36 (98)
T ss_dssp CSCSSSSCHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred chhhccCCHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4678999999884 7899999999988886543
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.17 E-value=2.3e+02 Score=19.83 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=21.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 96 WTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 96 lr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
....|.-+.+||+.|++-|..|+....-|.-
T Consensus 45 yEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 45 YEWKLKATKAEVAQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344555569999999999999865444443
Done!