Query psy5794
Match_columns 152
No_of_seqs 164 out of 202
Neff 3.9
Searched_HMMs 13730
Date Fri Aug 16 18:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5794.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5794hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ab4a_ e.11.1.1 (A:) DNA Gyra 63.3 4.8 0.00035 33.4 5.3 40 83-126 436-475 (493)
2 d1ybza1 a.130.1.1 (A:2-75) mon 38.0 39 0.0028 20.7 5.5 39 94-135 4-45 (74)
3 d2d8da1 a.130.1.1 (A:3-82) Cho 37.1 39 0.0028 20.6 5.4 38 94-134 4-44 (80)
4 d1fpoa2 a.23.1.1 (A:77-171) HS 34.4 39 0.0029 21.5 5.2 60 73-138 5-70 (95)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 34.2 38 0.0027 23.3 5.4 39 83-124 83-121 (129)
6 d2hepa1 a.2.21.1 (A:1-42) Hypo 32.9 16 0.0012 21.4 2.7 18 82-100 20-37 (42)
7 d1ecma_ a.130.1.1 (A:) Chorism 30.3 45 0.0032 20.7 4.9 37 94-133 4-43 (91)
8 d1zbdb_ g.50.1.1 (B:) Effector 29.7 41 0.003 22.3 4.9 18 83-104 2-19 (124)
9 d5mdha2 d.162.1.1 (A:155-333) 28.7 42 0.0031 23.1 4.9 33 79-116 146-178 (179)
10 d2cmda2 d.162.1.1 (A:146-312) 22.8 59 0.0043 21.7 4.7 12 80-91 135-146 (167)
11 d2o3fa1 a.4.1.20 (A:1-83) Puta 22.4 20 0.0014 22.7 1.8 23 123-145 55-77 (83)
12 d1auaa1 a.5.3.1 (A:4-96) N-ter 20.6 55 0.004 20.9 3.9 59 73-132 15-87 (93)
13 d1ivsa1 a.2.7.3 (A:797-862) Va 20.0 56 0.0041 19.3 3.6 25 92-116 5-29 (66)
No 1
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=63.29 E-value=4.8 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHh
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKK 126 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~elKr 126 (152)
.||-+|+ ++|+.|+.+++++|..|...|.++.+...-++.
T Consensus 436 ~LT~le~----~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~ 475 (493)
T d1ab4a_ 436 KLTGLEH----EKLLDEYKELLDQIAELLRILGSADRLMEVIRE 475 (493)
T ss_dssp GGSHHHH----HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3555676 589999999999999999999888776654444
No 2
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=38.03 E-value=39 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh---hhhHHHHhhhCccchHH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKT---KTAQDLKKKLGFTVWKE 135 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe---~~~~elKrkLGit~~~e 135 (152)
++||.++..+..+|..| |+.+. +..+.+|++.|...+..
T Consensus 4 ~~lR~~ID~iD~~i~~L---l~~R~~~~~~I~~~K~~~~~~i~dp 45 (74)
T d1ybza1 4 KLLRKEIDKIDNQIISL---LKKRLEIAQAIGKIKKELNLPIEDR 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSCCH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCCCCh
Confidence 58999999999999987 54443 34568899999876543
No 3
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=37.07 E-value=39 Score=20.61 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh---hhhHHHHhhhCccchH
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKT---KTAQDLKKKLGFTVWK 134 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe---~~~~elKrkLGit~~~ 134 (152)
++||.++..+..+|..| |+.+. .+.+.+|...|...+.
T Consensus 4 ~~lR~~ID~iD~~i~~L---l~~R~~~~~~i~~~K~~~~~~i~~ 44 (80)
T d2d8da1 4 QALRKEVDRVNREILRL---LSERGRLVQEIGRLQTELGLPHYD 44 (80)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhcCCCCCc
Confidence 68999999999999987 44443 3456899999877643
No 4
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=34.37 E-value=39 Score=21.47 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHhhhhh-HHHHhhhCccchHHhhH
Q psy5794 73 SPDSGINDLQNLSPEEQEKQKAEWTQELARVE-----EEINTLKHVLASKTKTA-QDLKKKLGFTVWKEFND 138 (152)
Q Consensus 73 s~~~~~~~~~~LseEE~e~~~eelr~EL~kvE-----eEI~TLrqvLaaKe~~~-~elKrkLGit~~~elkq 138 (152)
+..+++.+|..|++- .|||.+|.-+. +.+..|.+-+..+.+.+ ..++.-+.-..|...+.
T Consensus 5 ~E~~T~~DpeFLMeq------ME~RE~lee~~~~~d~~~l~~l~~ei~~~~~~~~~~l~~~~~~~d~~~A~~ 70 (95)
T d1fpoa2 5 SEQHTVRDTAFLMEQ------LELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAAD 70 (95)
T ss_dssp CSSSCCSCHHHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhhhcCCHHHHHHH------HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 344666777777542 68888886653 23444444444333332 34454444444444333
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.25 E-value=38 Score=23.29 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhHHH
Q psy5794 83 NLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDL 124 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaaKe~~~~el 124 (152)
+-|+|++.+.-.+|..|+..++.| |..++..++.-...+
T Consensus 83 ~~see~Q~~~i~~Le~E~~~~~~e---l~~~v~e~e~ll~~i 121 (129)
T d1ykhb1 83 DVSAEEQLRKIDMLQKKLVEVEDE---KIEAIKKKEKLMRHV 121 (129)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 468898877777777777666654 333344454444333
No 6
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=32.88 E-value=16 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy5794 82 QNLSPEEQEKQKAEWTQEL 100 (152)
Q Consensus 82 ~~LseEE~e~~~eelr~EL 100 (152)
.+||++|+.. +..||.|-
T Consensus 20 ~gLT~~E~~E-Q~~LR~eY 37 (42)
T d2hepa1 20 GVITEEEKAE-QQKLRQEY 37 (42)
T ss_dssp HCCCHHHHHH-HHHHHHHH
T ss_pred cCCCHHHHHH-HHHHHHHH
Confidence 5899999853 36677654
No 7
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=30.26 E-value=45 Score=20.69 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhh---hhHHHHhhhCccch
Q psy5794 94 AEWTQELARVEEEINTLKHVLASKTK---TAQDLKKKLGFTVW 133 (152)
Q Consensus 94 eelr~EL~kvEeEI~TLrqvLaaKe~---~~~elKrkLGit~~ 133 (152)
++||.++..+..+|..| |..+.. ..+.+|...|.+..
T Consensus 4 ~~lR~~ID~iD~~i~~L---l~~R~~l~~~I~~~K~~~~~~i~ 43 (91)
T d1ecma_ 4 LALREKISALDEKLLAL---LAERRELAVEVGKAKLLSHRPVR 43 (91)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCCcc
Confidence 58899999999999977 544433 45678888887654
No 8
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.73 E-value=41 Score=22.27 Aligned_cols=18 Identities=39% Similarity=0.505 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhHH
Q psy5794 83 NLSPEEQEKQKAEWTQELARVE 104 (152)
Q Consensus 83 ~LseEE~e~~~eelr~EL~kvE 104 (152)
-||+||++ .+..-|.+-+
T Consensus 2 ~LT~eE~~----~i~~VL~r~~ 19 (124)
T d1zbdb_ 2 ELTDEEKE----IINRVIARAE 19 (124)
T ss_dssp CCCSSHHH----HHHHHHHHHH
T ss_pred CCCHHHHH----HHHHHHHHHH
Confidence 58999986 4555454443
No 9
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.68 E-value=42 Score=23.08 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 79 NDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 79 ~~~~~LseEE~e~~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
-++ .||++|++ .|+.-...+.+||.+-...|.+
T Consensus 146 ~~l-~L~~~E~~----~l~~Sa~~L~~~~~~~~~~l~~ 178 (179)
T d5mdha2 146 EGL-PINDFSRE----KMDLTAKELAEEKETAFEFLSS 178 (179)
T ss_dssp CCC-CCCHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CCCHHHHH----HHHHHHHHHHHHHHHHHHHhcc
Confidence 445 59999995 7788888888999988777764
No 10
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=22.84 E-value=59 Score=21.66 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=8.9
Q ss_pred CCCCCCHHHHHH
Q psy5794 80 DLQNLSPEEQEK 91 (152)
Q Consensus 80 ~~~~LseEE~e~ 91 (152)
....|+++|+++
T Consensus 135 ~l~~L~~~E~~~ 146 (167)
T d2cmda2 135 SIGTLSAFEQNA 146 (167)
T ss_dssp CCCCCCHHHHHH
T ss_pred eCCCCCHHHHHH
Confidence 445799999863
No 11
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=22.41 E-value=20 Score=22.69 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHhhhCccchHHhhHHHhhchh
Q psy5794 123 DLKKKLGFTVWKEFNDDLTQSIK 145 (152)
Q Consensus 123 elKrkLGit~~~elkqn~skg~~ 145 (152)
-+=+|||+.-+.+||..+.+...
T Consensus 55 Rf~kklG~~gf~e~k~~l~~el~ 77 (83)
T d2o3fa1 55 RLCKSLGLKGFQDLKMRVAGDLA 77 (83)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHc
Confidence 45589999999999999987654
No 12
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.59 E-value=55 Score=20.90 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhh----------hhhHHHHhhhCccc
Q psy5794 73 SPDSGINDLQNLSPEEQEKQKAEWTQELARVEE----EINTLKHVLASKT----------KTAQDLKKKLGFTV 132 (152)
Q Consensus 73 s~~~~~~~~~~LseEE~e~~~eelr~EL~kvEe----EI~TLrqvLaaKe----------~~~~elKrkLGit~ 132 (152)
+|+....-+..||++++... .++|.-+...-. .-.+|-.+|.|+. +..-.++++.|+..
T Consensus 15 ~~~~~~g~~g~Lt~~q~~~L-~elr~~l~~~~~~~~~DD~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~ 87 (93)
T d1auaa1 15 PPDALPGTPGNLDSAQEKAL-AELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDT 87 (93)
T ss_dssp CTTSCTTSTTTCCTTHHHHH-HHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred CCCCCCCCCCcCCHHHHHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcch
Confidence 33333344677999887544 677777765410 1236667776653 22335556666544
No 13
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.04 E-value=56 Score=19.32 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5794 92 QKAEWTQELARVEEEINTLKHVLAS 116 (152)
Q Consensus 92 ~~eelr~EL~kvEeEI~TLrqvLaa 116 (152)
+.+.|..+|.+++.+|..+..-|..
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~N 29 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLAS 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3468999999999999998877653
Done!