RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5794
         (152 letters)



>gnl|CDD|217962 pfam04201, TPD52, Tumour protein D52 family.  The hD52 gene was
           originally identified through its elevated expression
           level in human breast carcinoma. Cloning of D52
           homologues from other species has indicated that D52 may
           play roles in calcium-mediated signal transduction and
           cell proliferation. Two human homologues of hD52, hD53
           and hD54, have also been identified, demonstrating the
           existence of a novel gene/protein family. These proteins
           have an amino terminal coiled-coil that allows members
           to form homo- and heterodimers with each other.
          Length = 162

 Score = 51.1 bits (122), Expect = 9e-09
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 4/67 (5%)

Query: 84  LSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQS 143
           LS  E+E+ + E    LA++EEEI+TL+ VLA+K K   +LK+KLG T   E   ++++S
Sbjct: 26  LSEAEKEELRTE----LAKLEEEISTLRQVLAAKEKHLAELKRKLGLTPLSELKQNISKS 81

Query: 144 IKNVKET 150
             +V  T
Sbjct: 82  WHDVTAT 88



 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 1  VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKET 48
          +EEEI+TL+ VLA+K K   +LK+KLG T   E   ++++S  +V  T
Sbjct: 41 LEEEISTLRQVLAAKEKHLAELKRKLGLTPLSELKQNISKSWHDVTAT 88


>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family.  This
           family consists of the 116kDa V-type ATPase (vacuolar
           (H+)-ATPases) subunits, as well as V-type ATP synthase
           subunit i. The V-type ATPases family are proton pumps
           that acidify intracellular compartments in eukaryotic
           cells for example yeast central vacuoles,
           clathrin-coated and synaptic vesicles. They have
           important roles in membrane trafficking processes. The
           116kDa subunit (subunit a) in the V-type ATPase is part
           of the V0 functional domain responsible for proton
           transport. The a subunit is a transmembrane glycoprotein
           with multiple putative transmembrane helices it has a
           hydrophilic amino terminal and a hydrophobic carboxy
           terminal. It has roles in proton transport and assembly
           of the V-type ATPase complex. This subunit is encoded by
           two homologous gene in yeast VPH1 and STV1.
          Length = 707

 Score = 30.4 bits (69), Expect = 0.37
 Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 57  ILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEWTQELAR-VEEEINTLKHVLA 115
            LR +    +   + L    G  D+         +++    +   + VEE + +L+  + 
Sbjct: 39  KLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEIN 98

Query: 116 SKTKTAQDLKKKLGF 130
              +    L ++  F
Sbjct: 99  ELEEWLNVLDEEKSF 113


>gnl|CDD|215325 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase.
          Length = 382

 Score = 29.6 bits (67), Expect = 0.65
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 56  VILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQEKQKAEW----TQELARVEE 105
           +IL   IPG+E  N+    D+G       SP+E  +  AEW    + EL  + E
Sbjct: 305 IILNGYIPGQEEGNVPYVVDNGFGAFS-ESPKEIARIVAEWFGDKSDELEAMSE 357


>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
           topoisomerase IV), A subunit [DNA replication,
           recombination, and repair].
          Length = 804

 Score = 29.2 bits (66), Expect = 0.81
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 81  LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD 139
           L+ L+  E+EK      +EL  +E+EI  L+ +LAS+ +    +KK+L     K F D+
Sbjct: 428 LRRLTGLEEEK----IEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKK-FGDE 481


>gnl|CDD|145928 pfam03040, CemA, CemA family.  Members of this family are probable
           integral membrane proteins. Their molecular function is
           unknown. CemA proteins are found in the inner envelope
           membrane of chloroplasts but not in the thylakoid
           membrane. A cyanobacterial member of this family has
           been implicated in CO2 transport, but is probably not a
           CO2 transporter itself. They are predicted to be
           haem-binding however this has not been proven
           experimentally.
          Length = 230

 Score = 28.3 bits (64), Expect = 1.5
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 75  DSGINDLQNLSPEEQEKQKAEWTQELARV--EEEINTLKHVLA 115
           D  I +    S +E   +  +   ELA++  EE I  + ++L 
Sbjct: 71  DELIKESPPTSLQELRIEIHKKAIELAKIYNEESIQAILNLLT 113


>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
           and chromosome partitioning].
          Length = 420

 Score = 28.1 bits (63), Expect = 1.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 82  QNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKK 127
                 EQ+ Q+A+  ++L  +E EI +L+  L    +TA DLKK 
Sbjct: 50  LEKKIREQQDQRAKLEKQLKSLETEIASLEAQL---IETADDLKKL 92


>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
           envelope biogenesis, outer membrane].
          Length = 835

 Score = 27.7 bits (62), Expect = 2.7
 Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 16/64 (25%)

Query: 87  EEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKN 146
           +++     + +Q L +  E +N L          + D +              L QS + 
Sbjct: 61  QQELAINDQLSQALNQQTERLNAL---------ASDDRQL-------ANLLLQLLQSSRT 104

Query: 147 VKET 150
           ++E 
Sbjct: 105 IREQ 108


>gnl|CDD|188677 cd08722, RGS_SNX14, Regulator of G protein signaling (RGS) domain
          found in the Sorting Nexin14 (SNX14) protein.  The RGS
          (Regulator of G-protein Signaling) domain is an
          essential part of the SNX14 (Sorting Nexin14) protein,
          a member of  the RGS protein family. They are a diverse
          group of multifunctional proteins that regulate
          cellular signaling events downstream of G-protein
          coupled receptors (GPCRs). RGS proteins regulate many
          aspects of embryonic development such as glial
          differentiation, embryonic axis formation, skeletal and
          muscle development, cell migration during early
          embryogenesis, as well as apoptosis, cell
          proliferation, and modulation of cardiac development.
          SNX14 is believed to regulates membrane trafficking in
          motor neurons.
          Length = 127

 Score = 26.5 bits (59), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 57 ILRFVIPGEEANNLDLSPDSGINDLQNLSPEEQE 90
          +L+F +  E+ N   L+PD    + Q+L  E QE
Sbjct: 23 LLQFCLTVEDFNRRILNPDLTDEEKQSLHKEAQE 56


>gnl|CDD|147038 pfam04682, Herpes_BTRF1, Herpesvirus BTRF1 protein conserved
           region.  Herpesvirus protein.
          Length = 256

 Score = 26.5 bits (59), Expect = 5.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 68  NNLDLSPDSGINDLQNL 84
           N+L   PD  IN LQ+L
Sbjct: 96  NSLRFLPDLDINPLQHL 112


>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A. 
          Length = 427

 Score = 26.7 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 81  LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTK 119
           L+ L+ EE EK + E    +  +E+EI  L+ +LAS+ K
Sbjct: 386 LRRLTKEEIEKLEKE----IEELEKEIAELEKILASEKK 420


>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
          Length = 874

 Score = 26.6 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 88  EQEKQK-AEWTQELARVEEEINTLK 111
           E+E++K AE+ ++LA+++E +  LK
Sbjct: 849 EKEREKLAEYEEKLAKLKERLARLK 873


>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
          Length = 5163

 Score = 26.5 bits (58), Expect = 7.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 74   PDSGINDLQNLSPEEQEKQKAEWTQELAR 102
            P   + +LQ L   EQ++  A W +  A 
Sbjct: 4518 PQRRLGELQLLEKAEQQRIVALWNRTDAG 4546


>gnl|CDD|224309 COG1391, GlnE, Glutamine synthetase adenylyltransferase
           [Posttranslational modification, protein turnover,
           chaperones / Signal transduction mechanisms].
          Length = 963

 Score = 26.2 bits (58), Expect = 9.6
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 17/97 (17%)

Query: 10  HVLASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRDIHIVILRFVIPGEEANN 69
           H L    +  + L + +GF  W  F++ L + +K V       +          G+E   
Sbjct: 410 HTLPEDEEERRRLARAMGFADWAAFSEALEEHLKKV-RRVFSQLI---------GDEE-- 457

Query: 70  LDLSPDSGINDLQNLSPEEQEKQKAEWTQELARVEEE 106
            + S  S I    NL  E  E ++    + LA +  E
Sbjct: 458 -EESLLSEI---GNLVWEGDEDEEDT-LRTLAALGFE 489


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.309    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,618,750
Number of extensions: 685565
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 996
Number of HSP's successfully gapped: 133
Length of query: 152
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 64
Effective length of database: 7,034,450
Effective search space: 450204800
Effective search space used: 450204800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.0 bits)