RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5794
         (152 letters)



>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium cellulolyticum [TaxId: 1521]}
          Length = 629

 Score = 30.2 bits (68), Expect = 0.082
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 94  AEWTQELARVEEEINTLKHVLA-SKTKTAQDLKKKLGFTVWKEFNDDL 140
             +  +L       NTL +  A S  +T++   +KL   +W  ++D  
Sbjct: 489 VNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536



 Score = 28.2 bits (63), Expect = 0.45
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 5   INTLKHVLA-SKTKTAQDLKKKLGFTVWKEFNDDL 38
            NTL +  A S  +T++   +KL   +W  ++D  
Sbjct: 502 ANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 29.5 bits (66), Expect = 0.17
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 81  LQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFNDD 139
           LQ L+  E EK       E   + ++I  L  +L S  +  + ++++L   V ++F D 
Sbjct: 434 LQKLTGLEHEKLL----DEYKELLDQIAELLRILGSADRLMEVIREELE-LVREQFGDK 487


>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase
           RumA, catalytic domain {Escherichia coli [TaxId: 562]}
          Length = 358

 Score = 27.3 bits (59), Expect = 0.83
 Identities = 5/27 (18%), Positives = 12/27 (44%)

Query: 80  DLQNLSPEEQEKQKAEWTQELARVEEE 106
             Q+ S + Q++ K+     L + +  
Sbjct: 17  QQQHASVDLQQRSKSAALARLMKHDVS 43


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 12/57 (21%)

Query: 78  INDLQNLSPEEQEKQKAEWTQELARVEEEINTLKHVLASKTKTAQDLKKKLGFTVWK 134
           I+D++N       K K     E+ R+ +E+  ++             KKK    V K
Sbjct: 9   ISDIRNC------KSKEA---EIKRINKELANIRSKFKGDKALDGYSKKK---YVCK 53


>d1by7a_ e.1.1.1 (A:) Plasminogen activator inhibitor-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 381

 Score = 25.2 bits (54), Expect = 3.4
 Identities = 9/64 (14%), Positives = 19/64 (29%)

Query: 12  LASKTKTAQDLKKKLGFTVWKEFNDDLTQSIKNVKETQVRDIHIVILRFVIPGEEANNLD 71
           + S+  T   + K L F       D +  S +++           +L  V       +  
Sbjct: 43  MGSRGSTEDQMAKVLQFNEVGAAADKIHSSFRSLSSAINASTGNYLLESVNKLFGEKSAS 102

Query: 72  LSPD 75
              +
Sbjct: 103 FREE 106


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 1   VEEEINTLKHVLASKTKTAQDLKKKLGFTVWKEFN-DDLTQSIKNVKETQVRDIH---IV 56
           V+   + L   +A++     DLK + G  VW      +L     N+ +    ++      
Sbjct: 30  VQAVFDRLSATIAARVAEINDLKAQ-GQPVWPIIPFSELAM--GNISDATRAEVKRRGCA 86

Query: 57  ILRFVIPGEEANNLD 71
           +++   P E+A   D
Sbjct: 87  VIKGHFPREQALAWD 101


>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus
           thermophilus [TaxId: 274]}
          Length = 191

 Score = 24.6 bits (52), Expect = 5.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 76  SGINDLQNLSPEEQEKQKAEW 96
           +G+ D   L PE  +K  A+W
Sbjct: 171 AGLYDRPRLDPELYQKVLADW 191


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
           carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 363

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 80  DLQNLSPEEQEKQ----KAEWTQELARVEEE 106
           +L+ L      +     K  W +E+  +E+ 
Sbjct: 306 NLKGLGHINMMELFSISKEFWDKEVEDIEKY 336


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 545,028
Number of extensions: 24307
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 29
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (22.9 bits)