Query psy5800
Match_columns 152
No_of_seqs 95 out of 111
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 18:17:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2999|consensus 100.0 2.1E-53 4.6E-58 381.0 9.1 147 1-152 464-612 (713)
2 cd01248 PH_PLC Phospholipase C 98.6 3.7E-08 7.9E-13 72.3 4.0 65 76-151 3-67 (115)
3 PF12814 Mcp5_PH: Meiotic cell 97.2 0.0012 2.5E-08 49.4 5.9 75 74-148 4-80 (123)
4 cd01239 PH_PKD Protein kinase 82.0 1.8 3.9E-05 32.7 3.3 37 99-143 17-54 (117)
5 PF14215 bHLH-MYC_N: bHLH-MYC 76.1 3.1 6.6E-05 32.6 3.1 36 73-120 2-37 (163)
6 cd01235 PH_SETbf Set binding f 74.7 6.8 0.00015 26.9 4.3 37 101-142 18-54 (101)
7 PF04895 DUF651: Archaeal prot 61.3 6.2 0.00013 29.4 1.9 25 4-28 54-78 (110)
8 cd01238 PH_Tec Tec pleckstrin 48.9 47 0.001 23.7 4.8 57 80-142 2-60 (106)
9 cd01265 PH_PARIS-1 PARIS-1 ple 47.2 55 0.0012 22.8 4.9 39 99-143 19-57 (95)
10 PF04880 NUDE_C: NUDE protein, 44.3 22 0.00047 28.3 2.6 54 19-77 1-54 (166)
11 cd01244 PH_RasGAP_CG9209 RAS_G 41.6 52 0.0011 23.6 4.1 40 99-146 22-61 (98)
12 KOG4113|consensus 35.7 28 0.00061 25.6 1.9 21 102-122 58-78 (99)
13 COG3074 Uncharacterized protei 33.8 1.5E+02 0.0033 20.8 5.1 59 20-80 6-73 (79)
14 KOG0293|consensus 30.8 33 0.00071 31.6 1.9 21 98-118 225-245 (519)
15 smart00233 PH Pleckstrin homol 30.6 1.4E+02 0.003 18.6 4.5 41 101-146 21-61 (102)
16 COG5526 Lysozyme family protei 29.8 72 0.0016 25.7 3.4 54 62-119 24-84 (191)
17 KOG2790|consensus 29.1 43 0.00092 29.6 2.2 38 102-139 142-184 (370)
18 PF07215 DUF1419: Protein of u 25.3 1.1E+02 0.0023 23.1 3.4 25 99-123 83-108 (111)
19 KOG0440|consensus 24.9 12 0.00027 31.5 -1.7 37 115-151 68-118 (243)
20 cd01236 PH_outspread Outspread 23.7 1.9E+02 0.0041 20.9 4.5 41 99-145 26-66 (104)
21 cd01241 PH_Akt Akt pleckstrin 23.6 2.5E+02 0.0054 19.6 5.1 18 101-118 20-37 (102)
22 cd01264 PH_melted Melted pleck 22.7 1.5E+02 0.0032 21.5 3.8 40 101-146 22-61 (101)
23 PRK15422 septal ring assembly 21.2 3E+02 0.0064 19.5 4.9 59 20-80 6-73 (79)
24 PF08621 RPAP1_N: RPAP1-like, 21.0 2.3E+02 0.0051 17.9 4.6 19 57-75 25-43 (49)
25 PF07676 PD40: WD40-like Beta 20.2 1.2E+02 0.0027 17.0 2.5 17 100-116 11-27 (39)
No 1
>KOG2999|consensus
Probab=100.00 E-value=2.1e-53 Score=381.03 Aligned_cols=147 Identities=59% Similarity=0.966 Sum_probs=142.2
Q ss_pred ChhhhHHHHHHHhccCCCcHHHHHHHhhccChHHHHHHHHHHhhhhhhhhcCCcchHHHhhhhcHHHHHHHHHHHHhHhh
Q psy5800 1 VFSVVREQITRALSSQPASLDKFRANISRLTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLV 80 (152)
Q Consensus 1 V~~vVR~QI~~~L~~~p~t~d~~e~~l~~~~Y~~i~~~~Q~E~~~~e~~~~~~~~v~eLRe~L~~E~~efVk~QRi~~Ll 80 (152)
||+||||||.|||..+|.++|+|+.+|+.|+|.+|+++||.||+.+|+. +++||.+||++|+||++|+|||||+|+|+
T Consensus 464 VmqVVrEQl~r~L~~kp~sld~fkskl~~lsY~eil~irqsErl~qEd~--~s~pIleLkeKi~PeilELIkqqrLnrL~ 541 (713)
T KOG2999|consen 464 VMQVVREQLRRALKRKPQSLDQFKSKLETLSYREILRIRQSERLSQEDF--QSPPILELKEKIQPEILELIKQQRLNRLV 541 (713)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHhccHHHHHHHHHHHhhccccc--cCchHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999955 45999999999999999999999999999
Q ss_pred cCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCC--CCCCCCCCccCccceeeeeeCCCCCCcccC
Q psy5800 81 EGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSI--PQLDHLPNKLPVADIKALLVGKDCPHMKEA 152 (152)
Q Consensus 81 qGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~--p~le~L~~KIdls~I~~vvsgk~cph~~~~ 152 (152)
+||.|+|.+++| ++++|||||||||||+||||||++++. |+.|+||+|++|+||++|++|||||||||.
T Consensus 542 eGt~FRKl~~rr---rqdkFWycrLspnhKvLhygd~de~p~~e~~~esl~~klpvaDIkav~tgkdcphmkek 612 (713)
T KOG2999|consen 542 EGTVFRKLSKRR---RQDKFWYCRLSPNHKVLHYGDCDEEPQGEVTQESLQEKLPVADIKAVVTGKDCPHMKEK 612 (713)
T ss_pred hhhHHHHhhhhh---hhhhheeeeecCCcceeeecCccCCCCCCCchhhhhhhcCHHHHHHHhcCCCCcchhhc
Confidence 999999999999 999999999999999999999999965 999999999999999999999999999984
No 2
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.62 E-value=3.7e-08 Score=72.34 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=54.0
Q ss_pred HhHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCCCCccc
Q psy5800 76 LGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCPHMKE 151 (152)
Q Consensus 76 i~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~cph~~~ 151 (152)
+..|.+|+.|.|+.. + ...+.+++||+|+..+|+|++...+ ....|||++|++|-+|+.|++.+.
T Consensus 3 ~~~L~~G~~~~K~~~-~---~~~~~~~f~ld~~~~~l~W~~~~~~-------~~~~l~i~~IkeIR~G~~~k~~~~ 67 (115)
T cd01248 3 PEALQRGSVFIKWDD-T---SRERRRLFRLDEKGFFLYWKDEGKK-------EKKVLDISSIKEIRTGKQPKDLKL 67 (115)
T ss_pred hHHHhCCCEEEEEcC-C---CceeeEEEEEcCCCcEEEEeCCCCc-------cccEEEehhhhhhhCCCCCcchHH
Confidence 467999999999866 3 3455799999999999999986543 355799999999999999998764
No 3
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.15 E-value=0.0012 Score=49.35 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=51.6
Q ss_pred HHHhHhhcCccccccCCCC-ccc-ccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCCCC
Q psy5800 74 QRLGYLVEGTRFTKYSSRG-QVI-ILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCPH 148 (152)
Q Consensus 74 QRi~~LlqGawF~k~~~~r-~~~-~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~cph 148 (152)
+=|.+|..|+||-|+..+. +.. .....||+.|+|+.++|+|.+-+......-..=...|.+.+|.+|.-|...|-
T Consensus 4 ~ai~~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~ 80 (123)
T PF12814_consen 4 QAITQLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPP 80 (123)
T ss_pred HHHHHhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCc
Confidence 4477899999999985433 110 12236777899999999998876443321222234599999999998877664
No 4
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.98 E-value=1.8 Score=32.73 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=26.8
Q ss_pred ceEEEEecCCcceEEeecCCCCCCCCCCCCCCc-cCccceeeeeeC
Q psy5800 99 KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNK-LPVADIKALLVG 143 (152)
Q Consensus 99 k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~K-Idls~I~~vvsg 143 (152)
|-.|+||+.+.=.|..-|...+ +-| |+|++|-+|.+.
T Consensus 17 KRhYWrLDsK~Itlf~~e~~sk--------yyKeIPLsEIl~V~~~ 54 (117)
T cd01239 17 KKHYWRLDSKAITLYQEESGSR--------YYKEIPLAEILSVSSN 54 (117)
T ss_pred eeeEEEecCCeEEEEEcCCCCe--------eeEEeehHHheEEecc
Confidence 4569999998877766554433 334 999999999755
No 5
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal
Probab=76.07 E-value=3.1 Score=32.61 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=26.9
Q ss_pred HHHHhHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCC
Q psy5800 73 QQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEK 120 (152)
Q Consensus 73 ~QRi~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~ 120 (152)
||||+.||++.+-.. -=|+|+|+.-.+|-|||+-=.
T Consensus 2 q~~Lr~lv~~~~W~Y------------aVFWk~~~~~~~L~W~DG~~~ 37 (163)
T PF14215_consen 2 QQRLRSLVENSQWTY------------AVFWKLSPDNSVLVWGDGYCN 37 (163)
T ss_pred hHHHHHHhCCCCCcE------------EEEeEEcCCCCeeeEcceeec
Confidence 689999999653111 128999999999999997543
No 6
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=74.71 E-value=6.8 Score=26.92 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=24.0
Q ss_pred EEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeee
Q psy5800 101 WYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLV 142 (152)
Q Consensus 101 ~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvs 142 (152)
+|+-|.+|...|.|-+-+....| -..|||+.+++|..
T Consensus 18 RwFvL~~~~~~L~Yy~~~~~~~~-----~g~I~L~~~~~v~~ 54 (101)
T cd01235 18 RWFVLDPDKHQLRYYDDFEDTAE-----KGCIDLAEVKSVNL 54 (101)
T ss_pred eEEEEECCCCEEEEecCCCCCcc-----ceEEEcceeEEEee
Confidence 46678887666666654433223 35699998887765
No 7
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=61.33 E-value=6.2 Score=29.43 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=22.8
Q ss_pred hhHHHHHHHhccCCCcHHHHHHHhh
Q psy5800 4 VVREQITRALSSQPASLDKFRANIS 28 (152)
Q Consensus 4 vVR~QI~~~L~~~p~t~d~~e~~l~ 28 (152)
+|||.++.++.+.|..+|.+++.+.
T Consensus 54 ~VRE~vR~A~~~~p~~f~~l~eAl~ 78 (110)
T PF04895_consen 54 QVRENVRKAMKGKPEKFETLEEALE 78 (110)
T ss_pred hHHHHHHHHHhCCCcccCCHHHHHH
Confidence 6999999999999999999988775
No 8
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=48.88 E-value=47 Score=23.67 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=26.3
Q ss_pred hcCccccccCCCCcccccC-ceEEEEecCCcceEEeec-CCCCCCCCCCCCCCccCccceeeeee
Q psy5800 80 VEGTRFTKYSSRGQVIILD-KFWYVRLSPNHKVFQYGD-CDEKSIPQLDHLPNKLPVADIKALLV 142 (152)
Q Consensus 80 lqGawF~k~~~~r~~~~~~-k~~f~rLSpN~K~LhygD-~~e~~~p~le~L~~KIdls~I~~vvs 142 (152)
++|.+.-+..+++...+.+ +-||+.|+ +. .|+|-+ -.+... ..-.-|||+.+++|-.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~-~~-~L~Yyk~~~~~~~----~~kG~I~L~~~~~ve~ 60 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLT-KS-KLSYYEGDFEKRG----SKKGSIDLSKIKCVET 60 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEc-CC-EEEEECCCccccc----CcceeEECCcceEEEE
Confidence 4555555543322111111 22344565 33 365544 333211 1245688888776653
No 9
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.18 E-value=55 Score=22.77 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=21.2
Q ss_pred ceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeC
Q psy5800 99 KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVG 143 (152)
Q Consensus 99 k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsg 143 (152)
+.||+ |..+.-+|.|-.-.....| -+-|||+.++.+...
T Consensus 19 kRWFv-L~~~~~~L~Yyk~~~d~~p-----~G~I~L~~~~~~~~~ 57 (95)
T cd01265 19 SRWFA-LDDRTCYLYYYKDSQDAKP-----LGRVDLSGAAFTYDP 57 (95)
T ss_pred eEEEE-EcCCCcEEEEECCCCcccc-----cceEECCccEEEcCC
Confidence 35666 8877666766554332222 344677665544433
No 10
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=44.30 E-value=22 Score=28.34 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=21.7
Q ss_pred cHHHHHHHhhccChHHHHHHHHHHhhhhhhhhcCCcchHHHhhhhcHHHHHHHHHHHHh
Q psy5800 19 SLDKFRANISRLTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLG 77 (152)
Q Consensus 19 t~d~~e~~l~~~~Y~~i~~~~Q~E~~~~e~~~~~~~~v~eLRe~L~~E~~efVk~QRi~ 77 (152)
++++||.++.. -|-+- -+++.|+.|+|... .-++-||++++-==.|++-++|+.
T Consensus 1 SLeD~EsklN~-AIERn-alLE~ELdEKE~L~---~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 1 SLEDFESKLNQ-AIERN-ALLESELDEKENLR---EEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHH---HCH---------------------
T ss_pred CHHHHHHHHHH-HHHHh-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47888888752 23332 45677888888776 667777876653334555556654
No 11
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=41.57 E-value=52 Score=23.56 Aligned_cols=40 Identities=18% Similarity=0.081 Sum_probs=25.7
Q ss_pred ceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCC
Q psy5800 99 KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDC 146 (152)
Q Consensus 99 k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~c 146 (152)
|-||+.|+ .+.|.|-+-. .+....-|||++|+.|..-.++
T Consensus 22 KkRwF~Lt--~~~L~Y~k~~------~~~~~g~I~L~~i~~ve~v~~~ 61 (98)
T cd01244 22 KKRYFQLT--TTHLSWAKDV------QCKKSALIKLAAIKGTEPLSDK 61 (98)
T ss_pred ceeEEEEC--CCEEEEECCC------CCceeeeEEccceEEEEEcCCc
Confidence 44577888 4456665521 1344667999999999764443
No 12
>KOG4113|consensus
Probab=35.66 E-value=28 Score=25.59 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=17.7
Q ss_pred EEEecCCcceEEeecCCCCCC
Q psy5800 102 YVRLSPNHKVFQYGDCDEKSI 122 (152)
Q Consensus 102 f~rLSpN~K~LhygD~~e~~~ 122 (152)
|-|=.+|.|||-.+||+-++.
T Consensus 58 fSr~v~~~K~LvCADCEkGPi 78 (99)
T KOG4113|consen 58 FSREVPNLKYLVCADCEKGPI 78 (99)
T ss_pred eccccCCeeEEEEeccccCCc
Confidence 557789999999999987754
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.85 E-value=1.5e+02 Score=20.76 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=32.8
Q ss_pred HHHHHHHhhccChHHHHHHHHHHhhh-hhhhh--c-CCcchHHHhhhhcHHHHHHHHHH-----HHhHhh
Q psy5800 20 LDKFRANISRLTYSEITNLWQQERTS-REEWE--S-HAKPIVELKELITPEIVDLIQQQ-----RLGYLV 80 (152)
Q Consensus 20 ~d~~e~~l~~~~Y~~i~~~~Q~E~~~-~e~~~--~-~~~~v~eLRe~L~~E~~efVk~Q-----Ri~~Ll 80 (152)
+|.++.+++.- ...| .++|||..+ +|.-. . ..+...+-|+.|..|.-++=.+| ||+.|+
T Consensus 6 ~ekLE~KiqqA-vdTI-~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 6 FEKLEAKVQQA-IDTI-TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666532 3344 678998877 33211 1 11334566777877776654444 666665
No 14
>KOG0293|consensus
Probab=30.78 E-value=33 Score=31.62 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=16.9
Q ss_pred CceEEEEecCCcceEEeecCC
Q psy5800 98 DKFWYVRLSPNHKVFQYGDCD 118 (152)
Q Consensus 98 ~k~~f~rLSpN~K~LhygD~~ 118 (152)
+--||+..|||.|||-=+--+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD 245 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD 245 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC
Confidence 558999999999999765433
No 15
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=30.58 E-value=1.4e+02 Score=18.60 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=26.3
Q ss_pred EEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCC
Q psy5800 101 WYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDC 146 (152)
Q Consensus 101 ~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~c 146 (152)
+|+-|.. ++|+|-+-.....+ .+....|+|+++ .|..+.+.
T Consensus 21 ~~~~L~~--~~l~~~~~~~~~~~--~~~~~~i~l~~~-~v~~~~~~ 61 (102)
T smart00233 21 RYFVLFN--STLLYYKSEKAKKD--YKPKGSIDLSGI-TVREAPDP 61 (102)
T ss_pred EEEEEEC--CEEEEEeCCCcccc--CCCceEEECCcC-EEEeCCCC
Confidence 4777877 57777555443222 455667999998 66666654
No 16
>COG5526 Lysozyme family protein [General function prediction only]
Probab=29.83 E-value=72 Score=25.72 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=36.8
Q ss_pred hhcHHHHHHHHHHHHhHhhcCccccccCCCCcccccCceEEEEecCCc-------ceEEeecCCC
Q psy5800 62 LITPEIVDLIQQQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNH-------KVFQYGDCDE 119 (152)
Q Consensus 62 ~L~~E~~efVk~QRi~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~-------K~LhygD~~e 119 (152)
+++||-.+-||+.+.+.|---..+.-... + ..-+|||+=+-||+ -+||=||.-.
T Consensus 24 qiRpewa~~vkk~~k~ila~k~rYe~i~s-q---T~iPW~fiG~iH~~E~SlnF~thLhNGdpL~ 84 (191)
T COG5526 24 QIRPEWASVVKKEAKRILAGKPRYEQIES-Q---TGIPWWFIGLIHYRESSLNFGTHLHNGDPLG 84 (191)
T ss_pred ccCHHHHHHHHHHHHHHhcCCccchhhhc-c---cCCCeeeeehhhhhhccccccccccCCCccc
Confidence 46789999999999887644333322211 1 34479999998886 4788888653
No 17
>KOG2790|consensus
Probab=29.05 E-value=43 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=23.6
Q ss_pred EEEecCCcceEEeecCCCCC----C-CCCCCCCCccCccceee
Q psy5800 102 YVRLSPNHKVFQYGDCDEKS----I-PQLDHLPNKLPVADIKA 139 (152)
Q Consensus 102 f~rLSpN~K~LhygD~~e~~----~-p~le~L~~KIdls~I~~ 139 (152)
-|.++|+.+|+||+|-+.-. + +++.+-+.-|=|+|+||
T Consensus 142 ~w~~~~da~yvyyCaNETVHGVEf~~~P~~~~~~~vlVaDmSS 184 (370)
T KOG2790|consen 142 TWELNPDASYVYYCANETVHGVEFDFIPVNDPKGAVLVADMSS 184 (370)
T ss_pred hcccCCCccEEEEecCceeeceecCCCCCCCCCCceEEEeccc
Confidence 36889999999999876422 1 33334334444555554
No 18
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=25.31 E-value=1.1e+02 Score=23.06 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=18.4
Q ss_pred ceEEEEecCCcceEE-eecCCCCCCC
Q psy5800 99 KFWYVRLSPNHKVFQ-YGDCDEKSIP 123 (152)
Q Consensus 99 k~~f~rLSpN~K~Lh-ygD~~e~~~p 123 (152)
-|+-.+.+-.-|+.| |+|..++..|
T Consensus 83 VFf~l~Idg~~R~FhgyCDL~d~~Sp 108 (111)
T PF07215_consen 83 VFFALRIDGRIRYFHGYCDLSDRGSP 108 (111)
T ss_pred EEEEEEECCceeEEEEeeecCCCCCc
Confidence 366677777777775 8998887654
No 19
>KOG0440|consensus
Probab=24.92 E-value=12 Score=31.50 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=28.3
Q ss_pred ecCCCCCC-CCCCCCCCccCcc-------------ceeeeeeCCCCCCccc
Q psy5800 115 GDCDEKSI-PQLDHLPNKLPVA-------------DIKALLVGKDCPHMKE 151 (152)
Q Consensus 115 gD~~e~~~-p~le~L~~KIdls-------------~I~~vvsgk~cph~~~ 151 (152)
|++.+-.. |..+||-|=|.+. +|+++.|-..||||..
T Consensus 68 g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~Msa 118 (243)
T KOG0440|consen 68 GNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHMSA 118 (243)
T ss_pred ccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccccC
Confidence 44444444 7778888877777 7999999999999964
No 20
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=23.66 E-value=1.9e+02 Score=20.91 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=22.9
Q ss_pred ceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCC
Q psy5800 99 KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKD 145 (152)
Q Consensus 99 k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~ 145 (152)
+.||+ |..+...-+|.|-+-...| ..-|||+...+|..|.+
T Consensus 26 rRWFv-L~~~~~L~y~~d~~~~~~p-----~G~IdL~~~~~V~~~~~ 66 (104)
T cd01236 26 RRWFI-LYDHGLLTYALDEMPTTLP-----QGTIDMNQCTDVVDAEA 66 (104)
T ss_pred ceEEE-EeCCCEEEEeeCCCCCccc-----ceEEEccceEEEeeccc
Confidence 34565 5544444344443211113 35699999999987744
No 21
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.60 E-value=2.5e+02 Score=19.64 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.5
Q ss_pred EEEEecCCcceEEeecCC
Q psy5800 101 WYVRLSPNHKVFQYGDCD 118 (152)
Q Consensus 101 ~f~rLSpN~K~LhygD~~ 118 (152)
+|+.|.+|.+.++|.|-.
T Consensus 20 R~f~L~~~~~l~~yk~~~ 37 (102)
T cd01241 20 RYFLLKSDGSFIGYKEKP 37 (102)
T ss_pred EEEEEeCCCeEEEEecCC
Confidence 588999999999998855
No 22
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=22.74 E-value=1.5e+02 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=26.6
Q ss_pred EEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCC
Q psy5800 101 WYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDC 146 (152)
Q Consensus 101 ~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~c 146 (152)
||.=|+.|. ..+|.|-.+.. | +++-|||+++++|....++
T Consensus 22 RwF~L~~~~-L~y~K~~~~~~-~----~~g~IdL~~~~sVk~~~~~ 61 (101)
T cd01264 22 RYFTLSGAQ-LLFQKGKSKDD-P----DDCSIDLSKIRSVKAVAKK 61 (101)
T ss_pred EEEEEeCCE-EEEEeccCccC-C----CCceEEcccceEEeecccc
Confidence 355677655 55777654432 2 2678999999999886654
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.19 E-value=3e+02 Score=19.50 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=30.5
Q ss_pred HHHHHHHhhccChHHHHHHHHHHhhh-hhhhhc---CCcchHHHhhhhcHHHHHHH-----HHHHHhHhh
Q psy5800 20 LDKFRANISRLTYSEITNLWQQERTS-REEWES---HAKPIVELKELITPEIVDLI-----QQQRLGYLV 80 (152)
Q Consensus 20 ~d~~e~~l~~~~Y~~i~~~~Q~E~~~-~e~~~~---~~~~v~eLRe~L~~E~~efV-----k~QRi~~Ll 80 (152)
++.++.+++.. --.| .++|||..+ ++.-.. ....+..=|+.|..|..++= =+-||+-|+
T Consensus 6 leqLE~KIqqA-vdtI-~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 6 FEKLEAKVQQA-IDTI-TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777632 3345 778998887 332111 11223333555666665542 344666665
No 24
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=21.03 E-value=2.3e+02 Score=17.94 Aligned_cols=19 Identities=21% Similarity=0.597 Sum_probs=15.4
Q ss_pred HHHhhhhcHHHHHHHHHHH
Q psy5800 57 VELKELITPEIVDLIQQQR 75 (152)
Q Consensus 57 ~eLRe~L~~E~~efVk~QR 75 (152)
.+|.+.|-|.+++|++.-+
T Consensus 25 ~eL~~~LdP~li~~L~~R~ 43 (49)
T PF08621_consen 25 EELLESLDPKLIEFLKKRA 43 (49)
T ss_pred HHHHHhCCHHHHHHHHHhh
Confidence 4678888999999998654
No 25
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=20.19 E-value=1.2e+02 Score=16.98 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=13.4
Q ss_pred eEEEEecCCcceEEeec
Q psy5800 100 FWYVRLSPNHKVFQYGD 116 (152)
Q Consensus 100 ~~f~rLSpN~K~LhygD 116 (152)
-+....|||.|+|-|.=
T Consensus 11 ~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp EEEEEE-TTSSEEEEEE
T ss_pred ccCEEEecCCCEEEEEe
Confidence 56788999999999864
Done!