Query psy5800
Match_columns 152
No_of_seqs 95 out of 111
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:17:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a98_B Engulfment and cell mot 100.0 1.1E-40 3.6E-45 268.3 8.6 97 52-151 5-103 (203)
2 1mai_A Phospholipase C delta-1 99.1 7.5E-11 2.6E-15 87.4 4.2 70 73-150 7-76 (131)
3 3ohm_B 1-phosphatidylinositol- 98.4 1.2E-07 4.1E-12 89.6 4.6 64 77-151 19-82 (885)
4 2zkm_X 1-phosphatidylinositol- 97.9 7.2E-06 2.5E-10 76.5 4.0 61 77-148 15-75 (799)
5 2rrf_A Zinc finger FYVE domain 96.8 0.00098 3.4E-08 50.5 3.6 57 73-142 12-68 (141)
6 3qr0_A Phospholipase C-beta (P 93.0 0.077 2.6E-06 49.8 4.4 59 78-146 21-79 (816)
7 2lul_A Tyrosine-protein kinase 54.7 17 0.00059 26.5 4.6 59 78-142 15-74 (164)
8 2coa_A Protein kinase C, D2 ty 50.6 17 0.00057 26.7 3.8 51 83-144 12-63 (125)
9 1lbj_A Motilin; A-helix, B-tur 50.0 12 0.0004 20.3 2.2 15 29-43 4-18 (26)
10 2p06_A Hypothetical protein AF 46.7 10 0.00036 26.5 2.1 41 15-64 48-89 (114)
11 1v5u_A SBF1, SET binding facto 44.7 41 0.0014 21.9 4.9 39 100-143 26-64 (117)
12 3bc1_B Synaptotagmin-like prot 43.1 23 0.0008 22.7 3.2 50 32-92 8-57 (59)
13 2d9z_A Protein kinase C, NU ty 41.4 33 0.0011 25.2 4.2 38 99-144 25-63 (129)
14 3ff4_A Uncharacterized protein 30.5 18 0.00061 25.7 1.2 14 123-137 51-64 (122)
15 1x1f_A Signal-transducing adap 28.2 64 0.0022 23.4 4.0 32 102-140 38-69 (149)
16 2cod_A Centaurin-delta 1; ARF 26.1 85 0.0029 20.5 4.1 36 100-142 27-62 (115)
17 2eko_A Histone acetyltransfera 22.3 89 0.003 21.2 3.5 26 108-137 44-71 (87)
18 3ygs_P Procaspase 9; apoptosis 21.1 1.6E+02 0.0053 19.7 4.6 38 5-42 56-93 (97)
19 2lfv_A Protein DAMX; cell divi 24.1 24 0.00083 24.7 0.0 23 111-133 65-89 (106)
No 1
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=100.00 E-value=1.1e-40 Score=268.34 Aligned_cols=97 Identities=63% Similarity=1.010 Sum_probs=90.4
Q ss_pred CCcchHHHhhhhcHHHHHHHHHHHHhHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCC--CCCCCCC
Q psy5800 52 HAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSI--PQLDHLP 129 (152)
Q Consensus 52 ~~~~v~eLRe~L~~E~~efVk~QRi~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~--p~le~L~ 129 (152)
+++||++||++|+||++||||||||+||++|+||++.+++| .+++|||||||||||+||||||++... |++|+||
T Consensus 5 ~~~~v~~lre~l~~e~~e~VkeQRi~~L~~G~~F~k~~~~r---~~~k~~f~rLs~n~k~L~y~d~~~~~~~~p~ld~l~ 81 (203)
T 3a98_B 5 SSGPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARR---RQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQ 81 (203)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSSCCT---TCCSEEEEEECTTSSEEEEEECCBCSSCBCCBCCSC
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHHCCCeEeccCCcc---ccCceEEEEECCCCceEEEccccccccCCCChhhcc
Confidence 45899999999999999999999999999999999998877 778899999999999999999999764 9999999
Q ss_pred CccCccceeeeeeCCCCCCccc
Q psy5800 130 NKLPVADIKALLVGKDCPHMKE 151 (152)
Q Consensus 130 ~KIdls~I~~vvsgk~cph~~~ 151 (152)
+||||+||++|++|++|||+++
T Consensus 82 ~kI~ls~Is~V~sg~~~p~~~~ 103 (203)
T 3a98_B 82 DKLPVADIKAVVTGKDCPHMKE 103 (203)
T ss_dssp CEEEGGGEEEEEEGGGSTTC--
T ss_pred cceeHhhhhHhhcCCCCccccc
Confidence 9999999999999999999976
No 2
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.07 E-value=7.5e-11 Score=87.38 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=57.4
Q ss_pred HHHHhHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCCCCcc
Q psy5800 73 QQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCPHMK 150 (152)
Q Consensus 73 ~QRi~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~cph~~ 150 (152)
+|+|+.|.+|++|.|+.+++ .+ +.||++|++|++++||+. .++.....+.+|+|++|++|.+|+.||+++
T Consensus 7 ~q~l~~L~~Gt~l~K~~~~~---~~-k~r~f~l~~~~~~~w~~s----~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~ 76 (131)
T 1mai_A 7 DPDLQALLKGSQLLKVKSSS---WR-RERFYKLQEDCKTIWQES----RKVMRSPESQLFSIEDIQEVRMGHRTEGLE 76 (131)
T ss_dssp CHHHHHHHHCEEEEEESSSS---CE-EEEEEEECTTSSEEEECC----CCTTCCTTTTEEEGGGEEEEEESSCSHHHH
T ss_pred HHHHHHHHcCCeEEEECCCC---cc-eeEEEEECCCCCEEEeCC----cCCCCCCcCcEEEHhhhHHHHCCCCCHHHH
Confidence 68999999999999996654 33 679999999999999973 122244567889999999999999998754
No 3
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=89.58 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=53.4
Q ss_pred hHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCCCCccc
Q psy5800 77 GYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCPHMKE 151 (152)
Q Consensus 77 ~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~cph~~~ 151 (152)
..|++|++|.|+..++ ...++|++|||||.++|||++- + + | +++|+|++|++|.+|++|+|+|+
T Consensus 19 ~~L~~Gt~f~K~~~~~---~~~k~~~frLD~d~~~L~W~~~--~--k--e--~~~l~Is~IkeIR~G~~a~~pKd 82 (885)
T 3ohm_B 19 ETLRRGSKFIKWDEET---SSRNLVTLRVDPNGFFLYWTGP--N--M--E--VDTLDISSIRDTRTGRYARLPKD 82 (885)
T ss_dssp HHHHHCEEEEEECTTC---CSCCEEEEEECTTSCEEEEECG--G--G--C--EEEEEGGGEEEEEETTTSCCCCS
T ss_pred HHHhCCCeEEEECCCC---CCcEEEEEEECCCCCEEEEeCC--C--C--C--CceEeeehhhhhhcCcCCCCCcc
Confidence 3688999999997765 4567899999999999999982 1 1 1 35799999999999999999764
No 4
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=97.88 E-value=7.2e-06 Score=76.52 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=51.0
Q ss_pred hHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCCCC
Q psy5800 77 GYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCPH 148 (152)
Q Consensus 77 ~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~cph 148 (152)
..|.+|+.|.|...++ ...+.||+||+|+.++|+|++.. + + ..+|+|++|++|.+|+.|++
T Consensus 15 ~~L~~Gt~~~K~~~~~---~~~k~~~frLd~d~~~l~W~~~~----k--~--~~~l~I~~IkeIR~G~~s~~ 75 (799)
T 2zkm_X 15 AYLSQGERFIKWDDET---TVASPVILRVDPKGYYLYWTYQS----K--E--MEFLDITSIRDTRFGKFAKM 75 (799)
T ss_dssp HHHHHCEEEEEECTTT---CCEEEEEEEECTTSCEEEEEETT----S--C--EEEEEGGGEEEEEEGGGSCC
T ss_pred HHHhCCCEEEEEcCCC---cceeEEEEEEcCCCCEEEEccCC----C--c--CceEeeeeeHHhhcCCCCCC
Confidence 4688999999996655 44478999999999999999742 1 1 45899999999999999986
No 5
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=96.76 E-value=0.00098 Score=50.47 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=39.8
Q ss_pred HHHHhHhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeee
Q psy5800 73 QQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLV 142 (152)
Q Consensus 73 ~QRi~~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvs 142 (152)
.-+|..|++||-|-.-.+.. .+.--.-||||+|||||-. |-+. ...|+|+-|++|-.
T Consensus 12 DKqLKvLl~GatF~Vs~~~s---ek~e~~vCrLS~nhR~L~l-dgds---------h~eIels~I~~vqi 68 (141)
T 2rrf_A 12 DKQLKVLLSGATFLVTFGNS---EKPETMTCRLSNNQRYLFL-DGDS---------HYEIEIVHISTVQI 68 (141)
T ss_dssp HHHHHHHHHCEEEEECCSSC---CSCEEEEEEECTTSSEEEE-ESSS---------EEEEETTTCCCEEC
T ss_pred HHHHHHHhCCceEEEeccCC---CCCceEEEEecCCeeEEEE-cCCC---------CCcEEeeeeeEEEE
Confidence 35688999999998754333 2333578999999999998 3322 25677777776644
No 6
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=93.04 E-value=0.077 Score=49.80 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=45.8
Q ss_pred HhhcCccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeCCCC
Q psy5800 78 YLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVGKDC 146 (152)
Q Consensus 78 ~LlqGawF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsgk~c 146 (152)
.|.+|++|.|..... ...+..+.||+|+.-+|.|..-.. .+ ...|+|++|++|-+|+..
T Consensus 21 ~L~~G~~~~K~~~~s---~~~~~~~f~lD~d~~~L~W~~~~k---~~----~~~l~I~~I~eVR~G~~t 79 (816)
T 3qr0_A 21 QLIKGDKFLKWEEGS---SGFIEILLRVDPKGYFLYWKIEGK---ED----TQLLDLAYVRDIRCAKYA 79 (816)
T ss_dssp HHHHCEEEEEECTTC---CCCEEEEEEECTTSCEEEECCTTC---SS----CEEEEGGGEEEEEEGGGS
T ss_pred HHhCCCeEEEECCCC---CcceeEEEEEcCCCCEEEEeCCCC---Cc----CcEEEeeeeeeeecCCcC
Confidence 578899999997655 333578999999999999964211 11 256999999999999874
No 7
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=54.74 E-value=17 Score=26.51 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=30.4
Q ss_pred HhhcCccccccCCCCcccccC-ceEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeee
Q psy5800 78 YLVEGTRFTKYSSRGQVIILD-KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLV 142 (152)
Q Consensus 78 ~LlqGawF~k~~~~r~~~~~~-k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvs 142 (152)
.+++|-.+-+...++....++ +-||+.|..+ .|.|-+-+.... .....|+|++|+.|..
T Consensus 15 ~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~--~L~Yyk~~~~~~----~~~G~I~L~~~~~v~~ 74 (164)
T 2lul_A 15 TILEEILIKRSQQKKKTSPLNYKERLFVLTKS--MLTYYEGRAEKK----YRKGFIDVSKIKCVEI 74 (164)
T ss_dssp EEEEEEEEEECCCCSSSCCCCEEEEEEEEESS--EEEEECCCSSSC----CCCCEEEGGGCCEEEE
T ss_pred eeEEEEEEEecCCCCCCCCCCceeEEEEEECC--EEEEEeccCccc----ccccEEEEeeeEEEEe
Confidence 467776665543333111111 2246678766 577754332222 1134588888877654
No 8
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=50.57 E-value=17 Score=26.73 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=29.9
Q ss_pred ccccccCCCCcccccCceEEEEecCCcceEEeecCCCCCCCCCCCCCCc-cCccceeeeeeCC
Q psy5800 83 TRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNK-LPVADIKALLVGK 144 (152)
Q Consensus 83 awF~k~~~~r~~~~~~k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~K-Idls~I~~vvsgk 144 (152)
.|.-+++.+. ..-|-.|+||+-+.=.|...|-+.+ +-| |+|++|-.|..-+
T Consensus 12 GW~VH~t~~d---~~rKRHYWrLD~K~Itlf~~e~~~~--------~ykeIpL~eIl~v~~~~ 63 (125)
T 2coa_A 12 GWVVHYSNKD---TLRKRHYWRLDCKCITLFQNNTTNR--------YYKEIPLSEILTVESAQ 63 (125)
T ss_dssp EEEEECCSSS---CCCEEEEEEECSSEEEEESSSSCSS--------CSEEEETTTCCEEEESC
T ss_pred ceEEEEccCC---ccccceeeEecCCeEEEEecCCCCc--------eeeeeehhHeecccccc
Confidence 3544444433 2224679999987766655543332 122 8888888877643
No 9
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=50.03 E-value=12 Score=20.29 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=10.9
Q ss_pred ccChHHHHHHHHHHh
Q psy5800 29 RLTYSEITNLWQQER 43 (152)
Q Consensus 29 ~~~Y~~i~~~~Q~E~ 43 (152)
-|+|+++.+++.+|+
T Consensus 4 iFt~selqr~qEkEr 18 (26)
T 1lbj_A 4 IFTYGELQRMQEKER 18 (26)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHh
Confidence 388999988765554
No 10
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=46.69 E-value=10 Score=26.55 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=24.9
Q ss_pred cCCCcHHHH-HHHhhccChHHHHHHHHHHhhhhhhhhcCCcchHHHhhhhc
Q psy5800 15 SQPASLDKF-RANISRLTYSEITNLWQQERTSREEWESHAKPIVELKELIT 64 (152)
Q Consensus 15 ~~p~t~d~~-e~~l~~~~Y~~i~~~~Q~E~~~~e~~~~~~~~v~eLRe~L~ 64 (152)
+.|+.+=+| ++.|..--+.++-+++ |-.++|+|. +||++|-
T Consensus 48 ntprpwfdfseerllsrlfeemdelr--eavekedwe-------nlrdell 89 (114)
T 2p06_A 48 NTPRPWFDFSEERLLSRLFEEMDELR--EAVEKEDWE-------NLRDELL 89 (114)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHH--HHHHTTCHH-------HHHHHHH
T ss_pred CCCCCcccccHHHHHHHHHHHHHHHH--HHHHHHHHH-------HHHHHHH
Confidence 457777666 6666544455554433 556688897 5666553
No 11
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=44.70 E-value=41 Score=21.95 Aligned_cols=39 Identities=15% Similarity=0.226 Sum_probs=24.4
Q ss_pred eEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeeeC
Q psy5800 100 FWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLVG 143 (152)
Q Consensus 100 ~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvsg 143 (152)
-+|+.|.++...|.|-.-.....| ...|+|++++.|...
T Consensus 26 ~R~fvL~~~~~~L~yy~~~~~~~~-----~g~i~L~~~~~v~~~ 64 (117)
T 1v5u_A 26 ARWFVLDKTKHQLRYYDHRMDTEC-----KGVIDLAEVEAVAPG 64 (117)
T ss_dssp EEEEEEETTTTEEEEESSSSCSSC-----CCEEEGGGEEEEECC
T ss_pred eeEEEEECCCCEEEEeecCCCCcc-----ceEEEccCcEEEeec
Confidence 358889885556666543332222 456899988877643
No 12
>3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens}
Probab=43.09 E-value=23 Score=22.69 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhhhhhhhcCCcchHHHhhhhcHHHHHHHHHHHHhHhhcCccccccCCCC
Q psy5800 32 YSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSRG 92 (152)
Q Consensus 32 Y~~i~~~~Q~E~~~~e~~~~~~~~v~eLRe~L~~E~~efVk~QRi~~LlqGawF~k~~~~r 92 (152)
...|+.+++.+..-+.... .-|+.|+..|.. ..++ --+.|.||.....+|
T Consensus 8 ~~~IL~VL~RD~~lr~~ee---~RIrkLk~~l~~-------~~~~-k~~sg~Wf~e~k~~r 57 (59)
T 3bc1_B 8 QEAIMKVLQRDAALKRAEE---ERVRHLPEKIKD-------DQQL-KNMSGQWFYEAKAKR 57 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHGGGTCCC-------HHHH-HHHHTGGGGC-----
T ss_pred HHHHHHHHhhHHHHhhChH---HHHHHHHHHhcc-------HHHh-ccccchhhHHHhhhc
Confidence 3455666655333222222 346777777764 1222 236799998865443
No 13
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.36 E-value=33 Score=25.23 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=25.2
Q ss_pred ceEEEEecCCcceEEeecCCCCCCCCCCCCCCc-cCccceeeeeeCC
Q psy5800 99 KFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNK-LPVADIKALLVGK 144 (152)
Q Consensus 99 k~~f~rLSpN~K~LhygD~~e~~~p~le~L~~K-Idls~I~~vvsgk 144 (152)
|-.|+||+-+.=.|...|...+. -| |+|++|-+|..-+
T Consensus 25 KRHYWrLD~K~Itlf~~e~~~k~--------ykeIpLseIL~v~~~~ 63 (129)
T 2d9z_A 25 KRHYWRLDSKCLTLFQNESGSKY--------YKEIPLSEILRISSPR 63 (129)
T ss_dssp EEEEEEEESSCEEEESCSSCCSC--------CCEECTTTCCEECCTT
T ss_pred cceeeEecCCeEEEEecCCCCce--------eceeeHHHhccccccc
Confidence 45699999887776666543331 22 8888887776643
No 14
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=30.45 E-value=18 Score=25.70 Aligned_cols=14 Identities=0% Similarity=0.064 Sum_probs=12.9
Q ss_pred CCCCCCCCccCccce
Q psy5800 123 PQLDHLPNKLPVADI 137 (152)
Q Consensus 123 p~le~L~~KIdls~I 137 (152)
|++++||+ +|+.+|
T Consensus 51 ~sl~dlp~-vDlavi 64 (122)
T 3ff4_A 51 NERPVIEG-VDTVTL 64 (122)
T ss_dssp CSCCCCTT-CCEEEE
T ss_pred CChHHCCC-CCEEEE
Confidence 99999999 999876
No 15
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=28.20 E-value=64 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=16.9
Q ss_pred EEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeee
Q psy5800 102 YVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKAL 140 (152)
Q Consensus 102 f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~v 140 (152)
|+-|..| ....|.|-.+.. | ...|||++.+.+
T Consensus 38 WFvLk~~-~L~Yyk~~~d~~-~-----~g~I~L~~~~~~ 69 (149)
T 1x1f_A 38 WTELRGT-TLFFYTDKKSII-Y-----VDKLDIVDLTCL 69 (149)
T ss_dssp EEEEETT-EEEEESCSSCSS-C-----SEECCCSSCCEE
T ss_pred EEEEcCC-EEEEEeCCCccc-c-----CcEEECCCceEE
Confidence 4567766 344455443322 2 246777776655
No 16
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.06 E-value=85 Score=20.48 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=20.3
Q ss_pred eEEEEecCCcceEEeecCCCCCCCCCCCCCCccCccceeeeee
Q psy5800 100 FWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADIKALLV 142 (152)
Q Consensus 100 ~~f~rLSpN~K~LhygD~~e~~~p~le~L~~KIdls~I~~vvs 142 (152)
-+|+.|..+ .|.|-.-..... ....|+|+.++.|..
T Consensus 27 kR~fvL~~~--~L~yy~~~~~~~-----~~g~i~l~~~~~v~~ 62 (115)
T 2cod_A 27 KRWVKFDGL--SISYYNNEKEMY-----SKGIIPLSAISTVRV 62 (115)
T ss_dssp EEEEEECSS--EEEEEESSCCSS-----CCCEEETTTEEEEEE
T ss_pred eEEEEEECC--EEEEEcCCCCcc-----cCCEEECCcceEEEe
Confidence 357788754 355544333222 244588888776654
No 17
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.32 E-value=89 Score=21.16 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=17.7
Q ss_pred CcceEEeecCCCCCC--CCCCCCCCccCccce
Q psy5800 108 NHKVFQYGDCDEKSI--PQLDHLPNKLPVADI 137 (152)
Q Consensus 108 N~K~LhygD~~e~~~--p~le~L~~KIdls~I 137 (152)
..=|+||-+++...+ -+ .++|+++.+
T Consensus 44 ~~YyVHY~g~NkRlDEWV~----~~rl~~~~~ 71 (87)
T 2eko_A 44 KLFYVHYIDFNRRLDEWVT----HERLDLKKI 71 (87)
T ss_dssp CCEEEEECSSCSCCCEEEC----TTTBCGGGC
T ss_pred cEEEEEeCCCCcccccccC----HhHcccccc
Confidence 456899999999886 22 345566654
No 18
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.09 E-value=1.6e+02 Score=19.65 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=27.4
Q ss_pred hHHHHHHHhccCCCcHHHHHHHhhccChHHHHHHHHHH
Q psy5800 5 VREQITRALSSQPASLDKFRANISRLTYSEITNLWQQE 42 (152)
Q Consensus 5 VR~QI~~~L~~~p~t~d~~e~~l~~~~Y~~i~~~~Q~E 42 (152)
+|..+......-|.-++.|-+-|.+..|..+-++++.+
T Consensus 56 ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~~~ 93 (97)
T 3ygs_P 56 ARQLIIDLETRGSQALPLFISCLEDTGQDMLASFLRTN 93 (97)
T ss_dssp HHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHccc
Confidence 45555555554478889998888888888887776554
No 19
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=24.11 E-value=24 Score=24.72 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.2
Q ss_pred eEEeecCCCCCC--CCCCCCCCccC
Q psy5800 111 VFQYGDCDEKSI--PQLDHLPNKLP 133 (152)
Q Consensus 111 ~LhygD~~e~~~--p~le~L~~KId 133 (152)
.+-||+|++... -.++.||..+-
T Consensus 65 vVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 65 VLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 477999999886 88999998764
Done!