RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5800
(152 letters)
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 107 bits (269), Expect = 3e-30
Identities = 61/101 (60%), Positives = 73/101 (72%), Gaps = 5/101 (4%)
Query: 53 AKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVF 112
+ PI+ELKE I PEI++LI+QQRL LVEGT F K ++R + DKFWY RLSPNHKV
Sbjct: 6 SGPILELKEKIQPEILELIKQQRLNRLVEGTCFRKLNARRR---QDKFWYCRLSPNHKVL 62
Query: 113 QYGDCDEKSI--PQLDHLPNKLPVADIKALLVGKDCPHMKE 151
YGD +E D L +KLPVADIKA++ GKDCPHMKE
Sbjct: 63 HYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKE 103
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal
transduction protein, hydrolase; HET: I3P; 1.90A {Rattus
norvegicus} SCOP: b.55.1.1
Length = 131
Score = 54.1 bits (130), Expect = 2e-10
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 69 DLIQQQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHL 128
L L L++G++ K S + + +L + K E
Sbjct: 3 GLQDDPDLQALLKGSQLLKVKSSSWR----RERFYKLQEDCKTIWQ----ESRKVMRSPE 54
Query: 129 PNKLPVADIKALLVGKDCPHMKE 151
+ DI+ + +G +++
Sbjct: 55 SQLFSIEDIQEVRMGHRTEGLEK 77
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.26
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 13 LSSQPASLDKFRANISRLTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQ 72
LS Q + KF + R+ Y + + + E+ ++T ++ Q
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--------------SMMTRMYIE--Q 115
Query: 73 QQRLGYLVEGTRFTKYS-SRGQVIILDKFWYVRLSPNHKVFQYG 115
+ RL + F KY+ SR Q + + + L P V G
Sbjct: 116 RDRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Score = 29.4 bits (65), Expect = 0.49
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 31/142 (21%)
Query: 37 NLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRL--GYL----VEGTR----F- 85
L Q + H+ I I E+ L++ + L V+ + F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 86 --------TKYSSRGQVIILDKFWYVRLSPNHKVF----------QYGDCDEKSIPQLDH 127
T++ + ++ L + +Y DC + +P+
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 128 LPNKLPVADIKALLVGKDCPHM 149
N ++ I + +D
Sbjct: 324 TTNPRRLSIIAESI--RDGLAT 343
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.37
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 119 EK-SIPQLD-----HLPNKLPVADIKA 139
EK ++ +L + + P IKA
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 0.66
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 70 LIQQQRL-GYLVEGTRFTKYSSRG-QVIILDKFWYVRLSPNHKVFQYGD 116
L R+ G + + +R QVI+ +SPNH F GD
Sbjct: 597 LTNILRMMGCVKKQKSARGIETRPAQVIL-------PMSPNHGTF-GGD 637
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 28.4 bits (62), Expect = 1.2
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 15/74 (20%)
Query: 53 AKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSRGQV-------IILDKFWYVRL 105
+ V EL P++ + L++G +F K+ + ++
Sbjct: 4 VETAVRQIELKWPKVPE--------QLIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWK 55
Query: 106 SPNHKVFQYGDCDE 119
+ Q D
Sbjct: 56 IEGKEDTQLLDLAY 69
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural
genomics, structural consortium, SGC, transferase; HET:
FEF; 2.40A {Homo sapiens}
Length = 324
Score = 27.2 bits (61), Expect = 2.1
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 111 VFQYGDCDEKSIPQLDHLPNKLPVADIKALL 141
VF+Y D D K LD N + + ++K L
Sbjct: 78 VFEYLDKDLKQY--LDDCGNIINMHNVKLFL 106
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 27.1 bits (61), Expect = 2.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 111 VFQYGDCDEKSIPQLDHLPNKLPVADIKALL 141
VF++ D D K + LD L K+ L
Sbjct: 78 VFEHLDQDLKKL--LDVCEGGLESVTAKSFL 106
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 111 VFQYGDCDEKSIPQLDHLPNKLPVADIKALL 141
VF++ D D K D L +K+ L
Sbjct: 79 VFEFCDQDLKKY--FDSCNGDLDPEIVKSFL 107
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 111 VFQYGDCDEKSIPQLDHLPNKLPVADIKALL 141
VF++ + D K + LD L + IK L
Sbjct: 97 VFEFMEKDLKKV--LDENKTGLQDSQIKIYL 125
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Length = 319
Score = 27.0 bits (59), Expect = 2.6
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 63 ITPEI----VDLIQQQRLGY---LVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQ-- 113
P I + R+ Y +++ + + S G +I + + ++ +
Sbjct: 203 FKPVIGPRPLVNGLHGRIDYYWSVLKPGQTLRVRSNGNLIAPWYGHILSGESHGRILKTD 262
Query: 114 --YGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCP 147
G+C + + L LP ++ G CP
Sbjct: 263 LNSGNCVVQCQTERGGLNTTLPFHNVSKYAFGN-CP 297
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein,
protein-immune system complex; HET: NAG SIA GAL; 2.00A
{Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A*
3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 4f3z_A* 3gbn_A* 3lzf_A*
3r2x_A* 4eef_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H*
1ruz_H* 3hto_A* ...
Length = 329
Score = 27.0 bits (59), Expect = 2.6
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 63 ITPEIVDLI----QQQRLGY---LVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQ-- 113
PEI Q+ R+ Y LVE + + G +++ + + + +
Sbjct: 212 FKPEIAICPKVRDQEGRMNYYWTLVEPGDKITFEATGNLVVPRYAFAMERNAGSGIIISD 271
Query: 114 --YGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCP 147
DC+ + LP +I + +GK CP
Sbjct: 272 TPVHDCNTTCQTPKGAINTSLPFQNIHPITIGK-CP 306
>3eyk_A Hemagglutinin HA1 chain; inhibitor, envelope protein, fusion
protein, glycoprotein, lipoprotein, membrane, palmitate,
transmembrane, virion; HET: EYK; 2.50A {Influenza a
virus} PDB: 3eyj_A*
Length = 323
Score = 26.9 bits (59), Expect = 2.7
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 88 YSSRGQVIILDKFWYVRLSPNHKVFQ----YGDCDEKSIPQLDHLPNKLPVADIKALLVG 143
++S G +I + + S V + G C + + + P ++ + +G
Sbjct: 238 FNSIGNLIAPRGHYKISKSTKSTVLKSDKRIGSCTSPCLTDKGSIQSDKPFQNVSRIAIG 297
Query: 144 KDCP 147
CP
Sbjct: 298 N-CP 300
>1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure,
native structure, hydrolase; HET: NAG; 1.55A
{Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB:
1y9g_A* 1y9m_A*
Length = 518
Score = 26.6 bits (59), Expect = 4.0
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 72 QQQRLGYLVE-GTRFTKYSSRGQVIILDKFWYVRLSPN---HKVFQYGD 116
Q Q + Y ++ G +T Y + VI Y N VF + +
Sbjct: 130 QSQSIAYSLDDGLTWTTYDAANPVIPNPPSPYEAEYQNFRDPFVFWHDE 178
>2ibx_A Hemagglutinin, fragment; haemagglutinin, H5N1, viral protein; HET:
NAG; 2.80A {Influenza a virus} SCOP: b.19.1.2
Length = 340
Score = 26.6 bits (58), Expect = 4.1
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 63 ITPEI----VDLIQQQRLGY---LVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQ-- 113
+ P I Q R+ + +++ + S G I + + + + + +
Sbjct: 225 LVPRIATRSKVNGQSGRMEFFWTILKPNDAINFESNGNFIAPEYAYKIVKKGDSTIMKSE 284
Query: 114 --YGDCDEKSIPQLDHLPNKLPVADIKALLVGKDCP 147
YG+C+ K + + + +P +I L +G+ CP
Sbjct: 285 LEYGNCNTKCQTPMGAINSSMPFHNIHPLTIGE-CP 319
>2p5z_X Type VI secretion system component; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.60A
{Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Length = 491
Score = 26.5 bits (59), Expect = 4.5
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 9/50 (18%)
Query: 75 RLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQ 124
+L +Y +V + + + S + ++Q +++PQ
Sbjct: 93 GFKHLSSSQDEARY----EVRLEPRMALLTRSRQNAIYQ-----NQTVPQ 133
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Length = 183
Score = 26.0 bits (57), Expect = 5.1
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 43 RTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKY 88
+TSR+ P++ L + + + ++ + L LV G+R ++
Sbjct: 58 KTSRD-------PVMNLTQGQVGQSLRALEGRGLTRLVMGSRADRW 96
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 26.0 bits (58), Expect = 5.9
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 23 FRANI---SRLTYSEITNLWQQERTSREEWESHAKPIVELKEL 62
F A I ++L Y ++++ + + E E+ A+ + L ++
Sbjct: 301 FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 6.7
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 33 SEITNLWQQERTSR------------EEWESHAKPIVELKE 61
E W++E+ R +EW AK +L+E
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKK--DLEE 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.398
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,298,268
Number of extensions: 125961
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 26
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)