RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5800
         (152 letters)



>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 119

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 70  LIQQQRLGYLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLP 129
           L     L  L++G++  K  S        +  + +L  + K                   
Sbjct: 2   LQDDPDLQALLKGSQLLKVKSSSW----RRERFYKLQEDCKTIWQESRK----VMRSPES 53

Query: 130 NKLPVADIKALLVGKDCPHMK 150
               + DI+ + +G     ++
Sbjct: 54  QLFSIEDIQEVRMGHRTEGLE 74


>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 131

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 11/73 (15%)

Query: 78  YLVEGTRFTKYSSRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQLDHLPNKLPVADI 137
           YL +G RF K+     V        +R+ P      +    ++           L +  I
Sbjct: 6   YLSQGERFIKWDDETTV---ASPVILRVDPKGYYLYWTYQSKEM--------EFLDITSI 54

Query: 138 KALLVGKDCPHMK 150
           +    GK     K
Sbjct: 55  RDTRFGKFAKMPK 67


>d3bz6a1 a.4.5.75 (A:13-96) Hypothetical protein PSPTO2686
          {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 84

 Score = 27.0 bits (60), Expect = 0.39
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 30 LTYSEITNLWQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYS 89
          LT + +     Q +TSR+       P++ L +    + +  ++ + L  LV G+R  ++ 
Sbjct: 31 LTLNALVIACNQ-KTSRD-------PVMNLTQGQVGQSLRALEGRGLTRLVMGSRADRWE 82

Query: 90 SR 91
           +
Sbjct: 83 HK 84


>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 195

 Score = 27.4 bits (60), Expect = 0.58
 Identities = 11/66 (16%), Positives = 28/66 (42%)

Query: 39  WQQERTSREEWESHAKPIVELKELITPEIVDLIQQQRLGYLVEGTRFTKYSSRGQVIILD 98
           W+ +  ++      A  +  +   +  +  D+ Q +   Y  +   + + SSR ++  +D
Sbjct: 121 WRFDVKAQMVDPRSASEVDRMFPGVPLDTHDVFQFREKAYFCQDRFYWRVSSRSELNQVD 180

Query: 99  KFWYVR 104
           +  YV 
Sbjct: 181 QVGYVT 186


>d2o3ba1 d.4.1.2 (A:35-274) Nuclease NucA {Anabaena sp., PCC 7120
           [TaxId: 1167]}
          Length = 240

 Score = 25.1 bits (54), Expect = 4.0
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 67  IVDLIQQQRLGYLVEGTRFTKYS-SRGQVIILDKFWYVRLSPNHKVFQYGDCDEKSIPQL 125
             +L+ Q +  Y+V G   +     +G+V +    W + +  +            +    
Sbjct: 132 CRELVSQGKELYIVAGPNGSLGKPLKGKVTVPKSTWKIVVVLDSPGSGLEGITANTRVIA 191

Query: 126 DHLPNKLPVAD 136
            ++PN   + +
Sbjct: 192 VNIPNDPELNN 202


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 317

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 89  SSRGQVIILDKFWYVRLSPNHKVFQ----YGDCDEKSIPQLDHLPNKLPVADIKALLVGK 144
            S G +I       +    + ++ +     G+C  +   +   L   LP  ++     G 
Sbjct: 236 RSNGNLIAPWYGHILSGESHGRILKTDLNSGNCVVQCQTERGGLNTTLPFHNVSKYAFGN 295

Query: 145 DCP 147
            CP
Sbjct: 296 -CP 297


>d1p4pa_ b.76.1.1 (A:) Outer surface protein B {Lyme disease
          spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 140

 Score = 24.4 bits (53), Expect = 5.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 24 RANISRLTYSEITN 37
          R+N + L YS+IT+
Sbjct: 6  RSNGTTLEYSQITD 19


>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
          chain, domains 1 and 2 {Pseudomonas putida [TaxId:
          303]}
          Length = 84

 Score = 23.0 bits (49), Expect = 9.2
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 5/53 (9%)

Query: 30 LTYSEITNLWQQERTSREEWESH-AKPIVELKELITPEIVDLIQQQRLGYLVE 81
             ++  +    +R + E W    A+  V     I+ +    +    + YL +
Sbjct: 17 PEGNDTYSRISHQRKTPEGWLMSIARMQVMHGLQISDDDRRTL----VKYLAD 65


>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
           {Thermus thermophilus [TaxId: 274]}
          Length = 234

 Score = 24.1 bits (51), Expect = 9.4
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 122 IPQLDHLPNKLPVADIK 138
            P+      K PV D++
Sbjct: 217 APEYPSYAPKDPVVDLE 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 564,687
Number of extensions: 24829
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 14
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)