Query psy5801
Match_columns 176
No_of_seqs 207 out of 374
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:18:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06017 Myosin_TH1: Myosin ta 99.9 2E-25 4.3E-30 180.1 11.3 93 79-176 47-144 (199)
2 PF06017 Myosin_TH1: Myosin ta 99.9 8.9E-23 1.9E-27 164.7 8.0 76 1-77 51-131 (199)
3 KOG0164|consensus 99.8 5E-20 1.1E-24 168.7 3.3 98 78-176 850-949 (1001)
4 KOG0164|consensus 99.7 3.2E-17 7E-22 150.4 2.5 76 1-77 855-930 (1001)
5 KOG0162|consensus 99.0 4.7E-10 1E-14 104.1 4.6 97 76-176 758-864 (1106)
6 KOG0162|consensus 98.4 2.8E-07 6E-12 86.1 3.6 73 1-73 765-847 (1106)
7 PF14593 PH_3: PH domain; PDB: 96.8 0.031 6.8E-07 40.9 10.6 73 79-157 10-83 (104)
8 PF12456 hSac2: Inositol phosp 96.7 0.0042 9E-08 46.2 5.6 52 6-58 37-94 (115)
9 PF14593 PH_3: PH domain; PDB: 96.4 0.018 3.8E-07 42.2 6.9 67 3-75 16-83 (104)
10 PF12456 hSac2: Inositol phosp 95.9 0.042 9.2E-07 40.7 7.2 60 79-139 28-93 (115)
11 cd01262 PH_PDK1 3-Phosphoinosi 95.3 0.093 2E-06 37.4 6.7 56 14-73 14-70 (89)
12 PF14470 bPH_3: Bacterial PH d 94.8 0.72 1.6E-05 31.9 10.1 91 79-172 4-95 (96)
13 cd01262 PH_PDK1 3-Phosphoinosi 93.1 1.7 3.7E-05 31.0 9.3 85 83-174 2-87 (89)
14 PF14470 bPH_3: Bacterial PH d 92.1 1 2.2E-05 31.1 7.1 59 8-66 14-73 (96)
15 PF00169 PH: PH domain; Inter 92.1 2.5 5.5E-05 28.3 11.7 87 85-173 4-101 (104)
16 cd00900 PH-like Pleckstrin hom 91.1 3 6.5E-05 27.3 8.6 61 95-157 17-83 (99)
17 cd00900 PH-like Pleckstrin hom 87.4 6.1 0.00013 25.8 8.1 61 13-75 17-83 (99)
18 PF00640 PID: Phosphotyrosine 86.7 5.2 0.00011 29.3 7.8 78 96-175 50-130 (140)
19 cd01218 PH_phafin2 Phafin2 Pl 84.3 14 0.00029 26.9 9.2 91 81-174 3-97 (104)
20 cd01260 PH_CNK Connector enhan 83.8 8.7 0.00019 26.6 7.4 75 96-172 19-94 (96)
21 smart00233 PH Pleckstrin homol 83.7 9.7 0.00021 24.7 10.0 72 85-157 4-84 (102)
22 cd01244 PH_RasGAP_CG9209 RAS_G 82.3 8.4 0.00018 27.6 6.9 72 97-172 21-96 (98)
23 PF06713 bPH_4: Bacterial PH d 81.8 13 0.00028 25.1 7.3 64 103-175 4-74 (74)
24 PF00169 PH: PH domain; Inter 80.5 14 0.00031 24.5 9.3 71 4-75 5-86 (104)
25 PF10480 ICAP-1_inte_bdg: Beta 80.0 6.9 0.00015 31.7 6.2 73 98-175 108-191 (200)
26 cd00821 PH Pleckstrin homology 78.2 15 0.00033 23.5 7.8 62 95-157 14-80 (96)
27 cd00934 PTB Phosphotyrosine-bi 77.9 22 0.00048 25.2 8.1 80 95-176 39-120 (123)
28 cd01251 PH_centaurin_alpha Cen 77.8 16 0.00035 26.0 7.1 75 97-174 16-99 (103)
29 cd00821 PH Pleckstrin homology 76.1 18 0.00038 23.2 7.0 63 13-76 14-81 (96)
30 PF08000 bPH_1: Bacterial PH d 76.0 7.7 0.00017 29.2 5.2 44 14-57 38-83 (124)
31 smart00233 PH Pleckstrin homol 75.6 19 0.00041 23.3 8.7 55 2-57 3-61 (102)
32 cd01238 PH_Tec Tec pleckstrin 74.2 24 0.00052 25.2 7.3 73 97-172 21-104 (106)
33 PF15277 Sec3-PIP2_bind: Exocy 72.0 32 0.00069 24.3 7.9 54 118-175 33-88 (91)
34 cd01252 PH_cytohesin Cytohesin 70.0 40 0.00086 24.6 8.1 53 96-150 15-69 (125)
35 cd01257 PH_IRS Insulin recepto 68.8 40 0.00087 24.2 9.7 85 82-172 2-99 (101)
36 cd01233 Unc104 Unc-104 pleckst 67.3 41 0.00088 23.6 7.7 76 96-175 17-98 (100)
37 cd01219 PH_FGD FGD (faciogenit 66.5 43 0.00093 23.6 10.0 87 85-174 5-98 (101)
38 cd01265 PH_PARIS-1 PARIS-1 ple 63.5 48 0.001 23.1 6.9 72 97-172 17-91 (95)
39 cd01244 PH_RasGAP_CG9209 RAS_G 62.4 36 0.00078 24.3 6.1 37 15-53 21-57 (98)
40 cd01247 PH_GPBP Goodpasture an 61.8 51 0.0011 22.9 7.4 74 96-172 14-89 (91)
41 smart00462 PTB Phosphotyrosine 59.5 64 0.0014 23.3 8.6 78 96-175 42-121 (134)
42 cd01256 PH_dynamin Dynamin ple 58.9 39 0.00085 24.8 5.7 54 95-149 17-73 (110)
43 cd01220 PH_CDEP Chondrocyte-de 58.1 65 0.0014 22.9 9.6 85 86-174 6-96 (99)
44 cd01246 PH_oxysterol_bp Oxyste 57.9 52 0.0011 21.7 9.7 75 95-172 13-89 (91)
45 PF15087 DUF4551: Protein of u 57.7 20 0.00044 33.9 5.0 56 79-136 28-83 (617)
46 PF10480 ICAP-1_inte_bdg: Beta 57.6 46 0.00099 27.1 6.4 49 16-68 108-162 (200)
47 PF00640 PID: Phosphotyrosine 55.8 76 0.0016 23.0 7.4 51 14-66 50-101 (140)
48 cd01235 PH_SETbf Set binding f 55.8 63 0.0014 22.1 7.8 60 96-157 14-84 (101)
49 COG2088 SpoVG Uncharacterized 53.4 20 0.00044 25.5 3.3 31 104-147 3-33 (95)
50 cd01256 PH_dynamin Dynamin ple 53.3 59 0.0013 23.9 5.8 55 13-68 17-74 (110)
51 PF08000 bPH_1: Bacterial PH d 53.2 94 0.002 23.3 9.9 85 79-174 30-122 (124)
52 PF09625 VP9: VP9 protein; In 52.6 11 0.00025 26.1 1.9 31 126-156 23-53 (79)
53 cd01261 PH_SOS Son of Sevenles 52.6 91 0.002 22.9 9.3 87 82-171 4-105 (112)
54 cd01253 PH_beta_spectrin Beta- 52.1 59 0.0013 22.6 5.7 59 98-157 24-88 (104)
55 cd01260 PH_CNK Connector enhan 51.5 76 0.0016 21.7 6.9 35 14-49 19-53 (96)
56 PF10882 bPH_5: Bacterial PH d 51.0 37 0.00081 23.6 4.5 34 135-174 66-99 (100)
57 cd01239 PH_PKD Protein kinase 49.6 1.1E+02 0.0023 22.9 7.3 57 97-157 16-79 (117)
58 PF14472 DUF4429: Domain of un 48.5 21 0.00045 25.2 2.9 27 123-149 27-56 (94)
59 cd01251 PH_centaurin_alpha Cen 47.5 97 0.0021 21.9 6.3 59 15-75 16-83 (103)
60 PF02893 GRAM: GRAM domain; I 46.7 64 0.0014 20.7 4.9 35 101-135 33-67 (69)
61 cd01266 PH_Gab Gab (Grb2-assoc 46.3 1E+02 0.0023 21.8 7.3 76 96-174 18-107 (108)
62 PF14472 DUF4429: Domain of un 46.2 24 0.00053 24.9 2.9 32 41-72 27-61 (94)
63 cd01240 PH_beta-ARK Beta adren 42.5 48 0.0011 24.7 4.0 43 125-171 46-91 (116)
64 PF08662 eIF2A: Eukaryotic tra 42.3 1.7E+02 0.0036 23.0 10.6 115 23-144 37-160 (194)
65 PF15087 DUF4551: Protein of u 41.1 69 0.0015 30.5 5.7 45 9-55 40-84 (617)
66 PF09625 VP9: VP9 protein; In 39.0 57 0.0012 22.6 3.7 30 44-73 23-52 (79)
67 cd01268 Numb Numb Phosphotyros 38.4 1.8E+02 0.0039 22.2 8.2 76 96-173 48-129 (138)
68 cd01238 PH_Tec Tec pleckstrin 38.0 1.5E+02 0.0032 21.1 6.5 40 15-54 21-61 (106)
69 PF04283 CheF-arch: Chemotaxis 37.8 2.3E+02 0.005 23.3 11.6 35 14-53 24-58 (221)
70 KOG2314|consensus 35.3 3.3E+02 0.0071 26.0 9.0 121 41-171 342-490 (698)
71 cd01252 PH_cytohesin Cytohesin 30.8 2.1E+02 0.0045 20.7 7.3 53 14-68 15-69 (125)
72 cd01267 CED6_AIDA1b Phosphotyr 30.6 2.2E+02 0.0048 20.9 8.0 78 96-175 43-124 (132)
73 cd01226 PH_exo84 Exocyst compl 29.2 2.2E+02 0.0048 20.5 8.7 89 83-174 3-97 (100)
74 PF04283 CheF-arch: Chemotaxis 28.8 3.3E+02 0.0071 22.3 9.1 71 96-174 24-106 (221)
75 cd00934 PTB Phosphotyrosine-bi 27.4 2.2E+02 0.0047 19.9 7.0 54 13-68 39-92 (123)
76 cd01246 PH_oxysterol_bp Oxyste 25.6 2E+02 0.0043 18.8 9.0 69 4-73 3-73 (91)
77 cd01222 PH_clg Clg (common-sit 25.1 2.6E+02 0.0056 19.9 9.2 73 97-172 16-92 (97)
78 PF06977 SdiA-regulated: SdiA- 24.6 4.1E+02 0.0089 22.1 11.4 134 17-157 34-198 (248)
79 PF14844 PH_BEACH: PH domain a 23.9 1.1E+02 0.0024 21.4 3.3 40 16-55 17-70 (106)
80 PF14111 DUF4283: Domain of un 23.4 99 0.0022 22.7 3.2 28 50-77 47-74 (153)
81 PF12068 DUF3548: Domain of un 22.7 1.8E+02 0.0039 23.8 4.7 50 124-174 115-166 (213)
82 PF12814 Mcp5_PH: Meiotic cell 22.2 3.2E+02 0.0069 19.9 7.6 56 3-58 12-79 (123)
83 cd01228 PH_BCR-related BCR (br 20.8 3.3E+02 0.0072 19.6 5.4 79 87-174 8-93 (96)
84 smart00568 GRAM domain in gluc 20.4 2.3E+02 0.0049 17.5 7.3 39 96-135 21-59 (61)
85 cd01261 PH_SOS Son of Sevenles 20.2 3.6E+02 0.0077 19.7 8.6 51 2-53 6-68 (112)
No 1
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=99.93 E-value=2e-25 Score=180.08 Aligned_cols=93 Identities=43% Similarity=0.604 Sum_probs=85.9
Q ss_pred CceeEEEEEEEEEecCCceeeeEEEEecceEEEec-----CCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcE
Q psy5801 79 EDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLD-----SGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDL 153 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld-----~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~ 153 (176)
+++++||+.|.||||++|.++|+|+||+.++|+++ +.+.+++ |++|||++|+|||+|+++|+|||||+|+++|+
T Consensus 47 ~e~vlFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~~~~~-kr~i~l~~I~~IsvS~~~D~~~vihv~~~~D~ 125 (199)
T PF06017_consen 47 DEKVLFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPKKYKL-KRRIPLSDITGISVSPLSDNFFVIHVPGEGDL 125 (199)
T ss_pred CcceEEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCceeeEE-EeccCcccccEEEEccCCCCEEEEEECCCCCE
Confidence 77999999999999999999999999999999996 3333555 88899999999999999999999999999999
Q ss_pred EEEeccCCCchhhhHHHHHhhcC
Q psy5801 154 VFTIISSEDRVGELVGALASRYY 176 (176)
Q Consensus 154 ~~~~~~~~~r~~E~v~~l~~~~~ 176 (176)
++++ ++.+|+++.|+++|+
T Consensus 126 il~~----~~k~Elv~~L~~~~~ 144 (199)
T PF06017_consen 126 ILES----DFKTELVTILCKAYK 144 (199)
T ss_pred EEEe----CcHHHHHHHHHHHHH
Confidence 9998 788999999999884
No 2
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=99.88 E-value=8.9e-23 Score=164.66 Aligned_cols=76 Identities=41% Similarity=0.525 Sum_probs=69.3
Q ss_pred CcceeEEEecCCCceeeeEEEEecCeEEEec-----cccccceeEeeeeccceeeEEeecCCCceEEEEcCCCCceEEEE
Q psy5801 1 MFSAFVHKTNKFNRCADRALLVTDFAVYKLD-----SGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTI 75 (176)
Q Consensus 1 lfs~~V~K~nr~~K~~~R~lllT~~~iy~ld-----~~~~~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~~~ 75 (176)
+||+.|.|+||++|+++|+|+||++|+|++| +.+ ...+||+|||++|+|||+|+++|++||||+|+++|+++++
T Consensus 51 lFs~~v~K~nr~~K~~~R~livT~~~iY~l~~~~~~~~~-~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~D~il~~ 129 (199)
T PF06017_consen 51 LFSDRVQKYNRRNKPQPRILIVTDKAIYLLDQRKVKDPK-KYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEGDLILES 129 (199)
T ss_pred EEEEEEEEecCCCCccceEEEEeCCeEEEEEEeecCCce-eeEEEeccCcccccEEEEccCCCCEEEEEECCCCCEEEEe
Confidence 6999999999999999999999999999996 333 3456888999999999999999999999999999999988
Q ss_pred ec
Q psy5801 76 IS 77 (176)
Q Consensus 76 ~~ 77 (176)
..
T Consensus 130 ~~ 131 (199)
T PF06017_consen 130 DF 131 (199)
T ss_pred Cc
Confidence 44
No 3
>KOG0164|consensus
Probab=99.78 E-value=5e-20 Score=168.70 Aligned_cols=98 Identities=51% Similarity=0.731 Sum_probs=91.6
Q ss_pred CCceeEEEEEEEEEecCCceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEe
Q psy5801 78 SEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 78 ~~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~ 157 (176)
.++.++||+.|.||||+||+..|.|++||.++|++|++| .++||+.|||.+++|||||+++|++||+|+.+..|++.|.
T Consensus 850 ~fg~Vlfs~~V~K~NrfnK~~~R~lllTd~~v~kld~~K-~k~mK~~I~l~nltgiSVss~~D~LfvlH~~~~~Dlv~~~ 928 (1001)
T KOG0164|consen 850 TFGPVLFSSHVKKVNRFNKPRSRALLLTDRHVYKLDPKK-QKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKDLVVCL 928 (1001)
T ss_pred CccceeehhhHHHhcccCCccceeEEeecCeEEEecchH-hhHhhcccchhhccceeeecCCCceEEEEecCCcchhhhh
Confidence 367999999999999999999999999999999999988 6899999999999999999999999999999888999987
Q ss_pred c--cCCCchhhhHHHHHhhcC
Q psy5801 158 I--SSEDRVGELVGALASRYY 176 (176)
Q Consensus 158 ~--~~~~r~~E~v~~l~~~~~ 176 (176)
. ..++|++|+|++++.+|+
T Consensus 929 ~~~~~e~rVgElvg~l~~~~~ 949 (1001)
T KOG0164|consen 929 DSVLQEDRVGELVGKLAAHYN 949 (1001)
T ss_pred hhhhhHHHHHHHHHHHHHHHh
Confidence 6 556999999999999884
No 4
>KOG0164|consensus
Probab=99.65 E-value=3.2e-17 Score=150.43 Aligned_cols=76 Identities=50% Similarity=0.719 Sum_probs=71.8
Q ss_pred CcceeEEEecCCCceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeecCCCceEEEEcCCCCceEEEEec
Q psy5801 1 MFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIIS 77 (176)
Q Consensus 1 lfs~~V~K~nr~~K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~~~~~ 77 (176)
|||++|.|+||+||++.|+|+|||+++|++|++| .+.||+.|||.+++|||||+++|++||+|+.+..|++.|+..
T Consensus 855 lfs~~V~K~NrfnK~~~R~lllTd~~v~kld~~K-~k~mK~~I~l~nltgiSVss~~D~LfvlH~~~~~Dlv~~~~~ 930 (1001)
T KOG0164|consen 855 LFSSHVKKVNRFNKPRSRALLLTDRHVYKLDPKK-QKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKDLVVCLDS 930 (1001)
T ss_pred eehhhHHHhcccCCccceeEEeecCeEEEecchH-hhHhhcccchhhccceeeecCCCceEEEEecCCcchhhhhhh
Confidence 6999999999999999999999999999999976 688999999999999999999999999999988899999843
No 5
>KOG0162|consensus
Probab=98.97 E-value=4.7e-10 Score=104.11 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=83.9
Q ss_pred ecCCceeEEEEEEEEEecCCceeeeEEEEecceEEEecCCc-------c--ceeeeeeeeccceeeEEecCCCCcEEEEE
Q psy5801 76 ISSEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGA-------K--FKAMKRGMSLQEMTGLSVSPGSDQLVVIH 146 (176)
Q Consensus 76 ~~~~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld~~k-------~--~k~~k~~i~l~~i~~vsvS~~~d~~~vih 146 (176)
-+..++++||+.+.||.|+.|+-.|.|++|-+++|.+..++ + ..++|++|.+..|.+||+|+++|+|++|+
T Consensus 758 vgkkekV~Fa~~~tK~~R~~k~~kr~llLT~k~lylig~~kvk~gpekg~~~e~~~~kidv~~I~sVsLs~~QDD~~~l~ 837 (1106)
T KOG0162|consen 758 VGKKEKVIFADTVTKYDRRFKPLKRDLLLTPKCLYLIGREKVKNGPEKGKVTEVLKRKIDVPQIKSVSLSNLQDDWVILY 837 (1106)
T ss_pred hcccceEEEEeeecccccccccccceEEeccceEEEEeehhhhcCccccchhhhhhhccchhhhceeccccccccEEEEE
Confidence 36689999999999999999999999999999999996443 1 13358889999999999999999999999
Q ss_pred eC-CCCcEEEEeccCCCchhhhHHHHHhhcC
Q psy5801 147 NN-KGNDLVFTIISSEDRVGELVGALASRYY 176 (176)
Q Consensus 147 ~~-~~~D~~~~~~~~~~r~~E~v~~l~~~~~ 176 (176)
.- +++|-++.+ .-++||++.|.+.|+
T Consensus 838 ~~~~~~d~ll~t----~FKTEf~t~L~k~~~ 864 (1106)
T KOG0162|consen 838 LGNDQYDSLLET----PFKTEFITLLKKRYE 864 (1106)
T ss_pred ecCCCcchHhhh----hhHHHHHHHHHHHHH
Confidence 84 478888865 557999999999874
No 6
>KOG0162|consensus
Probab=98.36 E-value=2.8e-07 Score=86.11 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=63.1
Q ss_pred CcceeEEEecCCCceeeeEEEEecCeEEEeccccc---------cceeEeeeeccceeeEEeecCCCceEEEEcC-CCCc
Q psy5801 1 MFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAK---------FKAMKRGMSLQEMTGLSVSPGSDQLVVIHNN-KGND 70 (176)
Q Consensus 1 lfs~~V~K~nr~~K~~~R~lllT~~~iy~ld~~~~---------~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~-~~~D 70 (176)
+||+.|.||+|+.|+-+|.|+||-+++|++..++- ...++++|.+..|.+||+|+++|+||+++.- +++|
T Consensus 765 ~Fa~~~tK~~R~~k~~kr~llLT~k~lylig~~kvk~gpekg~~~e~~~~kidv~~I~sVsLs~~QDD~~~l~~~~~~~d 844 (1106)
T KOG0162|consen 765 IFADTVTKYDRRFKPLKRDLLLTPKCLYLIGREKVKNGPEKGKVTEVLKRKIDVPQIKSVSLSNLQDDWVILYLGNDQYD 844 (1106)
T ss_pred EEEeeecccccccccccceEEeccceEEEEeehhhhcCccccchhhhhhhccchhhhceeccccccccEEEEEecCCCcc
Confidence 59999999999999999999999999999964430 1247889999999999999999999999984 4677
Q ss_pred eEE
Q psy5801 71 LVF 73 (176)
Q Consensus 71 l~~ 73 (176)
.++
T Consensus 845 ~ll 847 (1106)
T KOG0162|consen 845 SLL 847 (1106)
T ss_pred hHh
Confidence 765
No 7
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.80 E-value=0.031 Score=40.90 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=51.4
Q ss_pred CceeEEEEEEEEEecCCceeeeEEEEecc-eEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEe
Q psy5801 79 EDRVMFSAFVHKTNKFNRCADRALLVTDF-AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~K~~~R~llvTd~-~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~ 157 (176)
++.|+.+..|.|-..- -.+.|.|++||. .|+-+|+.+ ..+|--||++.-..+.+ .+..-|.||.|+ ..|.|..
T Consensus 10 ge~Il~~g~v~K~kgl-~~kkR~liLTd~PrL~Yvdp~~--~~~KGeI~~~~~l~v~~--k~~~~F~I~tp~-RtY~l~d 83 (104)
T PF14593_consen 10 GELILKQGYVKKRKGL-FAKKRQLILTDGPRLFYVDPKK--MVLKGEIPWSKELSVEV--KSFKTFFIHTPK-RTYYLED 83 (104)
T ss_dssp T--EEEEEEEEEEETT-EEEEEEEEEETTTEEEEEETTT--TEEEEEE--STT-EEEE--CSSSEEEEEETT-EEEEEE-
T ss_pred CCeEEEEEEEEEeece-EEEEEEEEEccCCEEEEEECCC--CeECcEEecCCceEEEE--ccCCEEEEECCC-cEEEEEC
Confidence 7889999999997433 388999999999 999999875 34588899996544444 444567999994 5777763
No 8
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=96.73 E-value=0.0042 Score=46.16 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=39.4
Q ss_pred EEEecCCC---ceeeeEEEEecCeEEEec--ccc-ccceeEeeeeccceeeEEeecCCC
Q psy5801 6 VHKTNKFN---RCADRALLVTDFAVYKLD--SGA-KFKAMKRGMSLQEMTGLSVSPGSD 58 (176)
Q Consensus 6 V~K~nr~~---K~~~R~lllT~~~iy~ld--~~~-~~k~~kr~i~l~~i~~vsvS~~~d 58 (176)
+..+|+.+ ..++|+||||++|+|... ... +....+| |||++|.+|..-++..
T Consensus 37 L~~~~~~~~~~~e~E~vlLLTd~alyi~~YD~~~~kv~~~~r-i~L~~I~~I~~G~~~~ 94 (115)
T PF12456_consen 37 LTEPDHWNKTENEEERVLLLTDKALYICKYDFIMEKVSQFQR-IPLNDIDKIQIGTFIT 94 (115)
T ss_pred EEecCcccCCCcccceEEEEecCEEEEEEecCCCccEEEEEE-EecccCcEEEEeccCC
Confidence 45677888 999999999999999994 111 1234455 9999999999876543
No 9
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=96.37 E-value=0.018 Score=42.23 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=46.1
Q ss_pred ceeEEEecCCCceeeeEEEEecC-eEEEeccccccceeEeeeeccceeeEEeecCCCceEEEEcCCCCceEEEE
Q psy5801 3 SAFVHKTNKFNRCADRALLVTDF-AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTI 75 (176)
Q Consensus 3 s~~V~K~nr~~K~~~R~lllT~~-~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~~~ 75 (176)
+..|.|- ++--.+.|.|++||. .+|-+|+.+ +.+|-.||++.- +++...+..-|.||.| ...+.+..
T Consensus 16 ~g~v~K~-kgl~~kkR~liLTd~PrL~Yvdp~~--~~~KGeI~~~~~--l~v~~k~~~~F~I~tp-~RtY~l~d 83 (104)
T PF14593_consen 16 QGYVKKR-KGLFAKKRQLILTDGPRLFYVDPKK--MVLKGEIPWSKE--LSVEVKSFKTFFIHTP-KRTYYLED 83 (104)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTTEEEEEETTT--TEEEEEE--STT---EEEECSSSEEEEEET-TEEEEEE-
T ss_pred EEEEEEe-eceEEEEEEEEEccCCEEEEEECCC--CeECcEEecCCc--eEEEEccCCEEEEECC-CcEEEEEC
Confidence 4455554 222578999999999 999999865 667888999954 5555566568899999 46666543
No 10
>PF12456 hSac2: Inositol phosphatase ; InterPro: IPR022158 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF02383 from PFAM. hSac2 functions as an inositol polyphosphate 5-phosphatase.
Probab=95.94 E-value=0.042 Score=40.74 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=43.5
Q ss_pred CceeEEEEEEEEEecCC---ceeeeEEEEecceEEEec--CCc-cceeeeeeeeccceeeEEecCCC
Q psy5801 79 EDRVMFSAFVHKTNKFN---RCADRALLVTDFAVYKLD--SGA-KFKAMKRGMSLQEMTGLSVSPGS 139 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~---K~~~R~llvTd~~ly~ld--~~k-~~k~~k~~i~l~~i~~vsvS~~~ 139 (176)
+|.++=.=.+...|..+ ..++|++++|++++|... -.. +....+| +||.+|.+|..-++.
T Consensus 28 ~e~~i~gW~L~~~~~~~~~~~e~E~vlLLTd~alyi~~YD~~~~kv~~~~r-i~L~~I~~I~~G~~~ 93 (115)
T PF12456_consen 28 DEEFIGGWLLTEPDHWNKTENEEERVLLLTDKALYICKYDFIMEKVSQFQR-IPLNDIDKIQIGTFI 93 (115)
T ss_pred CCcEEEEEEEEecCcccCCCcccceEEEEecCEEEEEEecCCCccEEEEEE-EecccCcEEEEeccC
Confidence 45555555677788888 999999999999998773 221 1333455 999999999886443
No 11
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.33 E-value=0.093 Score=37.42 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=41.8
Q ss_pred ceeeeEEEEecC-eEEEeccccccceeEeeeeccceeeEEeecCCCceEEEEcCCCCceEE
Q psy5801 14 RCADRALLVTDF-AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVF 73 (176)
Q Consensus 14 K~~~R~lllT~~-~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~ 73 (176)
-.+.|.|+|||. .++-+|+.+ +.+|..||++.+ ++++-..+..-|.||.|+ ..+.+
T Consensus 14 f~kkR~LiLTd~PrL~yvdp~~--~~~KgeIp~s~~-~l~v~~~~~~~F~I~Tp~-rty~l 70 (89)
T cd01262 14 FAKKRQLILTNGPRLIYVDPVK--KVVKGEIPWSDV-ELRVEVKNSSHFFVHTPN-KVYSF 70 (89)
T ss_pred ccceeeEEEecCceEEEEcCCc--CeEEeEeccccc-ceEEEEecCccEEEECCC-ceEEE
Confidence 568999999995 567778764 667888999993 466666666667889995 55554
No 12
>PF14470 bPH_3: Bacterial PH domain
Probab=94.79 E-value=0.72 Score=31.85 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=57.4
Q ss_pred CceeEEEEEEEEEecCCceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecC-CCCcEEEEEeCCCCcEEEEe
Q psy5801 79 EDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP-GSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~-~~d~~~vih~~~~~D~~~~~ 157 (176)
+|.|++.... .++......+-.+++||+.++-+...-.......-+|+.+|++|+... .-.+-+.++.+ +..+-+..
T Consensus 4 ~E~I~~~~~~-~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~-~~~~~i~~ 81 (96)
T PF14470_consen 4 DEEIEYVAVG-SYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETN-GEKIKIDN 81 (96)
T ss_pred CCEEEEEEEE-EEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEEC-CEEEEEEE
Confidence 5666666544 445446677889999999999887531112224559999999999984 33456788884 34555432
Q ss_pred ccCCCchhhhHHHHH
Q psy5801 158 ISSEDRVGELVGALA 172 (176)
Q Consensus 158 ~~~~~r~~E~v~~l~ 172 (176)
-..+.+.+++..|.
T Consensus 82 -i~k~~~~~~~~~i~ 95 (96)
T PF14470_consen 82 -IQKGDVKEFYEYIK 95 (96)
T ss_pred -cCHHHHHHHHHHHh
Confidence 12244555555543
No 13
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.15 E-value=1.7 Score=31.00 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=54.0
Q ss_pred EEEEEEEEEecCCceeeeEEEEecc-eEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEeccCC
Q psy5801 83 MFSAFVHKTNKFNRCADRALLVTDF-AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSE 161 (176)
Q Consensus 83 lfs~~V~K~nr~~K~~~R~llvTd~-~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~~~~ 161 (176)
++...|.|-..- -.+.|.|++||. .++-+|+.+ +..|--||++.+ ++++-..+..-|.+|.|+ .+|.++ +.+
T Consensus 2 l~~g~v~Kr~gl-f~kkR~LiLTd~PrL~yvdp~~--~~~KgeIp~s~~-~l~v~~~~~~~F~I~Tp~-rty~le--D~~ 74 (89)
T cd01262 2 LKIGAVKKRKGL-FAKKRQLILTNGPRLIYVDPVK--KVVKGEIPWSDV-ELRVEVKNSSHFFVHTPN-KVYSFE--DPK 74 (89)
T ss_pred ceeeeeeehhcc-ccceeeEEEecCceEEEEcCCc--CeEEeEeccccc-ceEEEEecCccEEEECCC-ceEEEE--CCC
Confidence 344455553332 357888999886 556678864 345888999993 455554444556889997 477776 344
Q ss_pred CchhhhHHHHHhh
Q psy5801 162 DRVGELVGALASR 174 (176)
Q Consensus 162 ~r~~E~v~~l~~~ 174 (176)
.+..+-+..|.+.
T Consensus 75 ~~a~~W~~~I~~~ 87 (89)
T cd01262 75 GRASQWKKAIEDL 87 (89)
T ss_pred CCHHHHHHHHHHH
Confidence 5666666666554
No 14
>PF14470 bPH_3: Bacterial PH domain
Probab=92.11 E-value=1 Score=31.09 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=41.2
Q ss_pred EecCCCceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeec-CCCceEEEEcC
Q psy5801 8 KTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP-GSDQLVVIHNN 66 (176)
Q Consensus 8 K~nr~~K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~-~~d~~~vih~~ 66 (176)
.+|.....++=.+++||+.++.....-..+.....+|+.+|++++... +-.+-+.++.+
T Consensus 14 ~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~ 73 (96)
T PF14470_consen 14 SYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETN 73 (96)
T ss_pred EEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEEC
Confidence 334335577889999999999997631112335669999999999995 23345677773
No 15
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=92.09 E-value=2.5 Score=28.35 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=57.2
Q ss_pred EEEEEEEe-cCCceeeeEEEEecceEEEecCCc---cceeeeeeeeccceeeEEecCC-------CCcEEEEEeCCCCcE
Q psy5801 85 SAFVHKTN-KFNRCADRALLVTDFAVYKLDSGA---KFKAMKRGMSLQEMTGLSVSPG-------SDQLVVIHNNKGNDL 153 (176)
Q Consensus 85 s~~V~K~n-r~~K~~~R~llvTd~~ly~ld~~k---~~k~~k~~i~l~~i~~vsvS~~-------~d~~~vih~~~~~D~ 153 (176)
+..+.+.. ...+-+.|.+++++..|+-+.... .... +..|+|.+++-....+. ..+.|.|+.+++.-+
T Consensus 4 ~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~-~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~ 82 (104)
T PF00169_consen 4 EGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKP-KGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSY 82 (104)
T ss_dssp EEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSE-SEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEE
T ss_pred EEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceee-eEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEE
Confidence 34555555 445889999999999999887554 2444 66699999944444333 566889999887677
Q ss_pred EEEeccCCCchhhhHHHHHh
Q psy5801 154 VFTIISSEDRVGELVGALAS 173 (176)
Q Consensus 154 ~~~~~~~~~r~~E~v~~l~~ 173 (176)
.+++ .+++-..+=+..|..
T Consensus 83 ~~~~-~s~~~~~~W~~~i~~ 101 (104)
T PF00169_consen 83 LFSA-ESEEERKRWIQAIQK 101 (104)
T ss_dssp EEEE-SSHHHHHHHHHHHHH
T ss_pred EEEc-CCHHHHHHHHHHHHH
Confidence 7776 333333444444443
No 16
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=91.09 E-value=3 Score=27.29 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=44.3
Q ss_pred CceeeeEEEEecceEEEecCCccceeee-eeeeccceeeEEecCC---CCcEEEEEeCC--CCcEEEEe
Q psy5801 95 NRCADRALLVTDFAVYKLDSGAKFKAMK-RGMSLQEMTGLSVSPG---SDQLVVIHNNK--GNDLVFTI 157 (176)
Q Consensus 95 ~K~~~R~llvTd~~ly~ld~~k~~k~~k-~~i~l~~i~~vsvS~~---~d~~~vih~~~--~~D~~~~~ 157 (176)
+..+.|.+.+++..++.+++...... . ..+|+..++ ++..+. .+..|.+..+. ...+.|++
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~-~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~ 83 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEI-KPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQA 83 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcC-CCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEc
Confidence 57889999999999998876531221 2 248999988 777764 45677787775 67788876
No 17
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=87.39 E-value=6.1 Score=25.75 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=40.7
Q ss_pred CceeeeEEEEecCeEEEeccccccceeE-eeeeccceeeEEeecC---CCceEEEEcCC--CCceEEEE
Q psy5801 13 NRCADRALLVTDFAVYKLDSGAKFKAMK-RGMSLQEMTGLSVSPG---SDQLVVIHNNK--GNDLVFTI 75 (176)
Q Consensus 13 ~K~~~R~lllT~~~iy~ld~~~~~k~~k-r~i~l~~i~~vsvS~~---~d~~~vih~~~--~~Dl~~~~ 75 (176)
+..++|.+.|++..++..+++. .+... ..+|+..+. ++..+. .+..|.|..++ +..+.+++
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~ 83 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDD-KKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQA 83 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCC-CCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEc
Confidence 5789999999999999997643 11112 248888887 666654 34566666664 45555544
No 18
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=86.74 E-value=5.2 Score=29.32 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=52.8
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEe-cCCCCcEEEEEeCCCCcEEEEec--cCCCchhhhHHHHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV-SPGSDQLVVIHNNKGNDLVFTII--SSEDRVGELVGALA 172 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsv-S~~~d~~~vih~~~~~D~~~~~~--~~~~r~~E~v~~l~ 172 (176)
+.++-.|.++...|..+|+.+ -.++-. .|+..|+=.+. .+....+|.+..+++.+-.+.|| ...+...|++..|.
T Consensus 50 ~~~~V~l~vs~~gI~v~~~~t-~~~l~~-~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~~A~~i~~~i~ 127 (140)
T PF00640_consen 50 KPQKVTLNVSSDGIKVIDPDT-GEVLMS-HPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCEDQAQEICQAIG 127 (140)
T ss_dssp TSEEEEEEEETTEEEEEETTT-TCEEEE-EEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESSCHHHHHHHHH
T ss_pred cCeEEEEEEcCCeEEEecCcc-cccccc-CCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhhHHHHHHHHHH
Confidence 567778889999999998765 333333 79999999999 66656677775544333222222 12237788888888
Q ss_pred hhc
Q psy5801 173 SRY 175 (176)
Q Consensus 173 ~~~ 175 (176)
++|
T Consensus 128 ~aF 130 (140)
T PF00640_consen 128 QAF 130 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 19
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=84.28 E-value=14 Score=26.90 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=50.5
Q ss_pred eeEEEEEEEEEecCCceeeeEEEEecceEEEec--CCccceeeeeeeeccceeeEEecCC--CCcEEEEEeCCCCcEEEE
Q psy5801 81 RVMFSAFVHKTNKFNRCADRALLVTDFAVYKLD--SGAKFKAMKRGMSLQEMTGLSVSPG--SDQLVVIHNNKGNDLVFT 156 (176)
Q Consensus 81 ~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld--~~k~~k~~k~~i~l~~i~~vsvS~~--~d~~~vih~~~~~D~~~~ 156 (176)
..+-.....|++|++-.+..+|+..|.=+|-=- ..++|+. +..+||..+.=..+... -.+-|.|..|++ -++++
T Consensus 3 ~li~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~-~~~i~L~~~~v~~~~d~~~~~n~f~I~~~~k-Sf~v~ 80 (104)
T cd01218 3 VLVGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVISKKKYNK-QHILPLEGVQVESIEDDGIERNGWIIKTPTK-SFAVY 80 (104)
T ss_pred EEEecCcEEEeecCCCceEEEEEecCEEEEEEeecCCceeeE-eeEEEccceEEEecCCcccccceEEEecCCe-EEEEE
Confidence 344455678999777444456667776666311 1223665 56689988743344321 124567777765 44443
Q ss_pred eccCCCchhhhHHHHHhh
Q psy5801 157 IISSEDRVGELVGALASR 174 (176)
Q Consensus 157 ~~~~~~r~~E~v~~l~~~ 174 (176)
. .+.+-+.|-+..|.++
T Consensus 81 A-~s~~eK~eWl~~i~~a 97 (104)
T cd01218 81 A-ATETEKREWMLHINKC 97 (104)
T ss_pred c-CCHHHHHHHHHHHHHH
Confidence 3 2334446666555543
No 20
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=83.83 E-value=8.7 Score=26.58 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=41.9
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCC-CCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPG-SDQLVVIHNNKGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~-~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
.=+.|.+++++..||-+.....-++ +..|||...+-...... ....|-|-.|+..-+.|+. .+++-..+=+.+|.
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~~-~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a-~s~~e~~~Wi~ai~ 94 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEKA-EGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAA-ETLDDLSQWVNHLI 94 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCcc-ceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEe-CCHHHHHHHHHHHH
Confidence 3568999999999988864432334 55599998643333222 2333444334435667765 23233344444443
No 21
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=83.66 E-value=9.7 Score=24.74 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=48.0
Q ss_pred EEEEEEEec--CCceeeeEEEEecceEEEecCCccc--eeeeeeeeccceeeEEecCC-----CCcEEEEEeCCCCcEEE
Q psy5801 85 SAFVHKTNK--FNRCADRALLVTDFAVYKLDSGAKF--KAMKRGMSLQEMTGLSVSPG-----SDQLVVIHNNKGNDLVF 155 (176)
Q Consensus 85 s~~V~K~nr--~~K~~~R~llvTd~~ly~ld~~k~~--k~~k~~i~l~~i~~vsvS~~-----~d~~~vih~~~~~D~~~ 155 (176)
...+.+... ...-++|.+++++..++.......- ......|||.+. .++.... .++.|.|..++..-+.+
T Consensus 4 ~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f 82 (102)
T smart00233 4 EGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLL 82 (102)
T ss_pred eEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEE
Confidence 345555554 5678999999999999887654210 122555999998 6666554 35677777766547777
Q ss_pred Ee
Q psy5801 156 TI 157 (176)
Q Consensus 156 ~~ 157 (176)
.+
T Consensus 83 ~~ 84 (102)
T smart00233 83 QA 84 (102)
T ss_pred Ec
Confidence 65
No 22
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=82.31 E-value=8.4 Score=27.61 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=42.0
Q ss_pred eeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecC---CC-CcEEEEEeCCCCcEEEEeccCCCchhhhHHHHH
Q psy5801 97 CADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP---GS-DQLVVIHNNKGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 97 ~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~---~~-d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
-+.|.|.+|+..|+=.+... -+. +..|||+.|.++..-. .+ .+.|-|-.|+ .-+.+.+ ++++-..|=+.+|.
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~-~~~-~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a-~s~~E~~~Wi~al~ 96 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQ-CKK-SALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQF-EAPVEATDWLNALE 96 (98)
T ss_pred CceeEEEECCCEEEEECCCC-Cce-eeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEEC-CCHHHHHHHHHHHh
Confidence 36899999999997766433 333 6669999999986422 22 2334444453 4455544 23222344444443
No 23
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=81.81 E-value=13 Score=25.07 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=39.5
Q ss_pred EEecceEEEecCCccceeeeeeeeccceeeEEecC--CC-----CcEEEEEeCCCCcEEEEeccCCCchhhhHHHHHhhc
Q psy5801 103 LVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP--GS-----DQLVVIHNNKGNDLVFTIISSEDRVGELVGALASRY 175 (176)
Q Consensus 103 lvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~--~~-----d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~~~~ 175 (176)
.+++..|..--. ..|.+||+++|++|+-+. +. -+-+.|+.. .++.++.+ . ....||+..|.+.+
T Consensus 4 ~i~~~~L~I~~G-----~~~~~I~i~~I~~I~~~~~~~~~~a~S~~rl~I~y~-~~~~i~Is--P-~~~~~FI~~L~k~n 74 (74)
T PF06713_consen 4 IIEDDYLIIKCG-----FFKKKIPIEDIRSIRPTKNPLSSPALSLDRLEIYYG-KYKSILIS--P-KDKEEFIAELQKRN 74 (74)
T ss_pred EEeCCEEEEEEC-----CcccEEEhHHccEEEecCCccccccccccEEEEEEC-CCCEEEEE--C-CCHHHHHHHHHhhC
Confidence 345555544322 235559999999998873 11 123466665 45666554 2 55699999998753
No 24
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=80.47 E-value=14 Score=24.50 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=46.0
Q ss_pred eeEEEec-CCCceeeeEEEEecCeEEEeccccc--cceeEeeeeccceeeEEeecC--------CCceEEEEcCCCCceE
Q psy5801 4 AFVHKTN-KFNRCADRALLVTDFAVYKLDSGAK--FKAMKRGMSLQEMTGLSVSPG--------SDQLVVIHNNKGNDLV 72 (176)
Q Consensus 4 ~~V~K~n-r~~K~~~R~lllT~~~iy~ld~~~~--~k~~kr~i~l~~i~~vsvS~~--------~d~~~vih~~~~~Dl~ 72 (176)
..+.|.. ...+-++|.++|++..++.-+.... ....+..|+|.++ .|+-.+. ..+.|.|+.+++.-+.
T Consensus 5 G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~ 83 (104)
T PF00169_consen 5 GWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYL 83 (104)
T ss_dssp EEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEE
T ss_pred EEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEE
Confidence 3445555 3458899999999999998875441 2233556999998 4554433 3346677776654555
Q ss_pred EEE
Q psy5801 73 FTI 75 (176)
Q Consensus 73 ~~~ 75 (176)
+++
T Consensus 84 ~~~ 86 (104)
T PF00169_consen 84 FSA 86 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 554
No 25
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=79.99 E-value=6.9 Score=31.73 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=44.8
Q ss_pred eeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCc------EEEEEeCCC----CcE-EEEeccCCCchhh
Q psy5801 98 ADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQ------LVVIHNNKG----NDL-VFTIISSEDRVGE 166 (176)
Q Consensus 98 ~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~------~~vih~~~~----~D~-~~~~~~~~~r~~E 166 (176)
.+.++-|+...|-..+... +.+ ..|+||-+| +.+....|+ ++++.++++ |++ +|.+ .+.+...|
T Consensus 108 eevil~VSKyGiKvt~~d~-~~V-L~RhpL~~I--vr~V~YdDGlG~g~~llAlK~~~~~~e~y~l~v~Qc-ss~~qA~~ 182 (200)
T PF10480_consen 108 EEVILSVSKYGIKVTDNDQ-RDV-LHRHPLHEI--VRMVCYDDGLGAGKNLLALKVGDERQEEYQLWVYQC-SSDEQAQE 182 (200)
T ss_pred CeEEEEEeeccEEEeecCC-cce-eeeeeeeeE--EEEEEEecCcCCcceEEEEEccCCCcceEEEEEEEc-CCHHHHHH
Confidence 4566667766665555443 556 555999999 445555555 477788775 555 3444 34455566
Q ss_pred hHHHHHhhc
Q psy5801 167 LVGALASRY 175 (176)
Q Consensus 167 ~v~~l~~~~ 175 (176)
+...|-++|
T Consensus 183 ICk~l~~aF 191 (200)
T PF10480_consen 183 ICKVLGQAF 191 (200)
T ss_pred HHHHHHHHH
Confidence 666665554
No 26
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=78.17 E-value=15 Score=23.51 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=42.6
Q ss_pred CceeeeEEEEecceEEEecCCccc--eeeeeeeeccceeeEEecCCC---CcEEEEEeCCCCcEEEEe
Q psy5801 95 NRCADRALLVTDFAVYKLDSGAKF--KAMKRGMSLQEMTGLSVSPGS---DQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 95 ~K~~~R~llvTd~~ly~ld~~k~~--k~~k~~i~l~~i~~vsvS~~~---d~~~vih~~~~~D~~~~~ 157 (176)
..-+.|.+++.+..++..+..... ...+..++|.+ ..+...+.+ ...|.|..+++..+.+++
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~ 80 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQA 80 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEEe
Confidence 456788999999998888754321 22356699999 566666554 456777776657777776
No 27
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=77.95 E-value=22 Score=25.22 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=52.8
Q ss_pred CceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEec--cCCCchhhhHHHHH
Q psy5801 95 NRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTII--SSEDRVGELVGALA 172 (176)
Q Consensus 95 ~K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~--~~~~r~~E~v~~l~ 172 (176)
.+.++-.|.++...|..+|+.. ..++.. -|++.|+=.+.-+....+|.+-..++.+-.+.+| ..++...++...|.
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~-~~~l~~-~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~a~~i~~~l~ 116 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKT-KEVLAS-HPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKVAEPIALTLG 116 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCC-CcEEEe-eccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCchHHHHHHHHH
Confidence 3567778889999999998765 334444 6999998888877666677777765442222222 11122577888887
Q ss_pred hhcC
Q psy5801 173 SRYY 176 (176)
Q Consensus 173 ~~~~ 176 (176)
++|+
T Consensus 117 ~af~ 120 (123)
T cd00934 117 QAFQ 120 (123)
T ss_pred HHHH
Confidence 7763
No 28
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=77.79 E-value=16 Score=26.02 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=46.6
Q ss_pred eeeeEEEEecceEEEecCCccceeeeeeeecccee-eEEecC------CCC--cEEEEEeCCCCcEEEEeccCCCchhhh
Q psy5801 97 CADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMT-GLSVSP------GSD--QLVVIHNNKGNDLVFTIISSEDRVGEL 167 (176)
Q Consensus 97 ~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~-~vsvS~------~~d--~~~vih~~~~~D~~~~~~~~~~r~~E~ 167 (176)
=+.|.|++++..||=++....... +-.|+|..+. +.+|.. ..+ ..|-|+.| +..|.++. ++++-..|=
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d~~~-~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty~l~a-~s~~e~~~W 92 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLDAFA-KGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKFLFAC-ETEQDRREW 92 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCCcCc-CcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEEEEEC-CCHHHHHHH
Confidence 478999999999987764322223 3448887754 455521 112 26778887 56788876 344445677
Q ss_pred HHHHHhh
Q psy5801 168 VGALASR 174 (176)
Q Consensus 168 v~~l~~~ 174 (176)
+.+|...
T Consensus 93 i~ai~~v 99 (103)
T cd01251 93 IAAFQNV 99 (103)
T ss_pred HHHHHHH
Confidence 7776654
No 29
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=76.13 E-value=18 Score=23.19 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=41.3
Q ss_pred CceeeeEEEEecCeEEEecccccc--ceeEeeeeccceeeEEeecCC---CceEEEEcCCCCceEEEEe
Q psy5801 13 NRCADRALLVTDFAVYKLDSGAKF--KAMKRGMSLQEMTGLSVSPGS---DQLVVIHNNKGNDLVFTII 76 (176)
Q Consensus 13 ~K~~~R~lllT~~~iy~ld~~~~~--k~~kr~i~l~~i~~vsvS~~~---d~~~vih~~~~~Dl~~~~~ 76 (176)
+.-++|.++|++..++..+..... ......+++.+ ..+...+.. ...|.|..+.+..+.+++.
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~ 81 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDSGRKNCFEIRTPDGRSYLLQAE 81 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcCCCCcEEEEecCCCcEEEEEeC
Confidence 467899999999999888754321 33455688888 556665553 3456666655556666553
No 30
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=75.96 E-value=7.7 Score=29.17 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=32.2
Q ss_pred ceeeeEEEEecCeEEEecccc--ccceeEeeeeccceeeEEeecCC
Q psy5801 14 RCADRALLVTDFAVYKLDSGA--KFKAMKRGMSLQEMTGLSVSPGS 57 (176)
Q Consensus 14 K~~~R~lllT~~~iy~ld~~~--~~k~~kr~i~l~~i~~vsvS~~~ 57 (176)
|...-.++.||+.+..+|.+. ..|.--..+|++.|+.+|+-+-+
T Consensus 38 k~iRD~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG 83 (124)
T PF08000_consen 38 KLIRDEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAG 83 (124)
T ss_dssp EESSEEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECS
T ss_pred hhhceeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCC
Confidence 344557889999999999432 22443445999999999998754
No 31
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=75.59 E-value=19 Score=23.27 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=37.1
Q ss_pred cceeEEEecC--CCceeeeEEEEecCeEEEecccccc--ceeEeeeeccceeeEEeecCC
Q psy5801 2 FSAFVHKTNK--FNRCADRALLVTDFAVYKLDSGAKF--KAMKRGMSLQEMTGLSVSPGS 57 (176)
Q Consensus 2 fs~~V~K~nr--~~K~~~R~lllT~~~iy~ld~~~~~--k~~kr~i~l~~i~~vsvS~~~ 57 (176)
+...+.+..+ .+..++|.++|++..++.-+++... ......||+.+. .++.....
T Consensus 3 ~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~ 61 (102)
T smart00233 3 KEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDP 61 (102)
T ss_pred eeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCC
Confidence 3456666665 5689999999999999888653211 223455888887 56665543
No 32
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=74.25 E-value=24 Score=25.25 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=42.2
Q ss_pred eeeeEEEEecceEEEecCCcc--ceeeeeeeeccceeeEEecCC---------CCcEEEEEeCCCCcEEEEeccCCCchh
Q psy5801 97 CADRALLVTDFAVYKLDSGAK--FKAMKRGMSLQEMTGLSVSPG---------SDQLVVIHNNKGNDLVFTIISSEDRVG 165 (176)
Q Consensus 97 ~~~R~llvTd~~ly~ld~~k~--~k~~k~~i~l~~i~~vsvS~~---------~d~~~vih~~~~~D~~~~~~~~~~r~~ 165 (176)
=+.|.|++++..|+=++.... -+. +-.|||+.+..+...+. ..+.|-|..++. .+.+.. .+++-..
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~~~~~~-kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r-~~yl~A-~s~~er~ 97 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFEKRGSK-KGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEG-TLYVFA-PTEELRK 97 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcccccCc-ceeEECCcceEEEEecCCcCcccccccCccEEEEeCCC-eEEEEc-CCHHHHH
Confidence 356999999999977764321 123 55699999887765322 134566666643 333332 2323335
Q ss_pred hhHHHHH
Q psy5801 166 ELVGALA 172 (176)
Q Consensus 166 E~v~~l~ 172 (176)
|=+.+|.
T Consensus 98 ~WI~ai~ 104 (106)
T cd01238 98 RWIKALK 104 (106)
T ss_pred HHHHHHH
Confidence 5555554
No 33
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=71.99 E-value=32 Score=24.26 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=36.1
Q ss_pred ceeeeeeeeccceeeEEecCCC--CcEEEEEeCCCCcEEEEeccCCCchhhhHHHHHhhc
Q psy5801 118 FKAMKRGMSLQEMTGLSVSPGS--DQLVVIHNNKGNDLVFTIISSEDRVGELVGALASRY 175 (176)
Q Consensus 118 ~k~~k~~i~l~~i~~vsvS~~~--d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~~~~ 175 (176)
|++ ++.=+|.++..|...... +..|.+|+-. .|.....+..+| ..|+..|.+.|
T Consensus 33 f~i-~ktW~L~eL~~I~~~~~~~~~~~F~l~~~k--~y~W~a~s~~Ek-~~Fi~~L~k~~ 88 (91)
T PF15277_consen 33 FQI-GKTWDLDELKAIDGINPDKDTPEFDLTFDK--PYYWEASSAKEK-NTFIRSLWKLY 88 (91)
T ss_dssp EEE-EEEEEGGG--EEEE-SSS--TTEEEEESSS--EEEEEESSHHHH-HHHHHHHHHHH
T ss_pred EEE-eeEEehhhceeeeeecCCCCCcCEEEEECC--CcEEEeCCHHHH-HHHHHHHHHHh
Confidence 776 555999999999997655 5678999943 555544233355 58999998876
No 34
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.01 E-value=40 Score=24.58 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=33.0
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEec--CCCCcEEEEEeCCC
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVS--PGSDQLVVIHNNKG 150 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS--~~~d~~~vih~~~~ 150 (176)
.=+.|.|++++..|+-+...+.-.. +..|||.++. |+.. +.....|-|+.|++
T Consensus 15 ~WkkRwfvL~~~~L~yyk~~~~~~~-~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 15 TWKRRWFILTDNCLYYFEYTTDKEP-RGIIPLENVS-IREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CeEeEEEEEECCEEEEEcCCCCCCc-eEEEECCCcE-EEEcccCCCCeeEEEECCcc
Confidence 4578999999999988864332333 5559999754 4443 22334455655553
No 35
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=68.82 E-value=40 Score=24.17 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=51.4
Q ss_pred eEEEEEEEEEecCCceeeeEEEEecc------eEEEecCCccc-----eeeeeeeeccceeeEEecCC--CCcEEEEEeC
Q psy5801 82 VMFSAFVHKTNKFNRCADRALLVTDF------AVYKLDSGAKF-----KAMKRGMSLQEMTGLSVSPG--SDQLVVIHNN 148 (176)
Q Consensus 82 ilfs~~V~K~nr~~K~~~R~llvTd~------~ly~ld~~k~~-----k~~k~~i~l~~i~~vsvS~~--~d~~~vih~~ 148 (176)
|..+..+.|- ..-+.|.|++... .|.-++..+.+ +. ++.|+|.+..+|.-.+. ....|.|..|
T Consensus 2 v~k~GyL~K~---K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p-~~vI~L~~c~~v~~~~d~k~~~~f~i~t~ 77 (101)
T cd01257 2 VRKSGYLRKQ---KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAP-KRVIPLESCFNINKRADAKHRHLIALYTR 77 (101)
T ss_pred ccEEEEEeEe---cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCc-eEEEEccceEEEeeccccccCeEEEEEeC
Confidence 3444555553 2345599999987 57777665432 33 67799999998876532 2357788777
Q ss_pred CCCcEEEEeccCCCchhhhHHHHH
Q psy5801 149 KGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 149 ~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
+. -+.+.+ .+++-..|=+..|.
T Consensus 78 dr-~f~l~a-ese~E~~~Wi~~i~ 99 (101)
T cd01257 78 DE-YFAVAA-ENEAEQDSWYQALL 99 (101)
T ss_pred Cc-eEEEEe-CCHHHHHHHHHHHh
Confidence 64 555554 33333344444443
No 36
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=67.25 E-value=41 Score=23.62 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=46.5
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCC------CCcEEEEEeCCCCcEEEEeccCCCchhhhHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPG------SDQLVVIHNNKGNDLVFTIISSEDRVGELVG 169 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~------~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~ 169 (176)
.=+.|.|++.+..|+-+...+.-.. +..|+|.++ .++.++. ..+.|-|..|+ .-+.|+. .+++-..|=+.
T Consensus 17 ~WkkRwfvL~~~~L~yyk~~~~~~~-~~~I~L~~~-~v~~~~~~~~~~~~~~~F~I~t~~-rt~~~~A-~s~~e~~~Wi~ 92 (100)
T cd01233 17 GWTRRFVVVRRPYLHIYRSDKDPVE-RGVINLSTA-RVEHSEDQAAMVKGPNTFAVCTKH-RGYLFQA-LSDKEMIDWLY 92 (100)
T ss_pred CcEEEEEEEECCEEEEEccCCCccE-eeEEEeccc-EEEEccchhhhcCCCcEEEEECCC-CEEEEEc-CCHHHHHHHHH
Confidence 3578999999999977765432333 444898865 4444432 24567776664 4577765 34444466666
Q ss_pred HHHhhc
Q psy5801 170 ALASRY 175 (176)
Q Consensus 170 ~l~~~~ 175 (176)
+|...|
T Consensus 93 ai~~~~ 98 (100)
T cd01233 93 ALNPLY 98 (100)
T ss_pred Hhhhhh
Confidence 665443
No 37
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=66.46 E-value=43 Score=23.62 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=50.8
Q ss_pred EEEEEEEecCC-ceeeeEEEEecceEEEecCC-----ccceeeeeeeeccceeeEEec-CCCCcEEEEEeCCCCcEEEEe
Q psy5801 85 SAFVHKTNKFN-RCADRALLVTDFAVYKLDSG-----AKFKAMKRGMSLQEMTGLSVS-PGSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 85 s~~V~K~nr~~-K~~~R~llvTd~~ly~ld~~-----k~~k~~k~~i~l~~i~~vsvS-~~~d~~~vih~~~~~D~~~~~ 157 (176)
...+.|..++. +.++|.|++-|..+.-..++ ..|++ +..++++.++=...+ +...+-|.|..++ .-+.++.
T Consensus 5 eG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~-~~~i~l~~~~v~~~~~~~~~~~F~I~~~~-rsf~l~A 82 (101)
T cd01219 5 EGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKV-RARIDVSGMQVCEGDNLERPHSFLVSGKQ-RCLELQA 82 (101)
T ss_pred ceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEE-EEEEecccEEEEeCCCCCcCceEEEecCC-cEEEEEc
Confidence 44567777764 68899999877755444331 13665 666998876432221 2223345666665 4666655
Q ss_pred ccCCCchhhhHHHHHhh
Q psy5801 158 ISSEDRVGELVGALASR 174 (176)
Q Consensus 158 ~~~~~r~~E~v~~l~~~ 174 (176)
++++-..|=+..|..+
T Consensus 83 -~s~eEk~~W~~ai~~~ 98 (101)
T cd01219 83 -RTQKEKNDWVQAIFSI 98 (101)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 3444446666666543
No 38
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=63.54 E-value=48 Score=23.11 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=40.3
Q ss_pred eeeeEEEEecc--eEEEecCCccceeeeeeeeccceeeEEecC-CCCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHH
Q psy5801 97 CADRALLVTDF--AVYKLDSGAKFKAMKRGMSLQEMTGLSVSP-GSDQLVVIHNNKGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 97 ~~~R~llvTd~--~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~-~~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
=+.|.|++++. .||=+......+. +-.|+|.... ++.++ ..++.|-|..|+. -+.|+. .+++-..+=+..|.
T Consensus 17 WkkRWFvL~~~~~~L~Yyk~~~d~~p-~G~I~L~~~~-~~~~~~~~~~~F~i~t~~r-~y~l~A-~s~~e~~~Wi~al~ 91 (95)
T cd01265 17 RRSRWFALDDRTCYLYYYKDSQDAKP-LGRVDLSGAA-FTYDPREEKGRFEIHSNNE-VIALKA-SSDKQMNYWLQALQ 91 (95)
T ss_pred ceeEEEEEcCCCcEEEEECCCCcccc-cceEECCccE-EEcCCCCCCCEEEEEcCCc-EEEEEC-CCHHHHHHHHHHHH
Confidence 47899999854 4666654322344 4458888853 33332 2255777777753 466654 33333344555554
No 39
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=62.39 E-value=36 Score=24.30 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=28.0
Q ss_pred eeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEe
Q psy5801 15 CADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV 53 (176)
Q Consensus 15 ~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsv 53 (176)
-..|.++||+..++--+.+. ...+..|||..|.++.-
T Consensus 21 ~KkRwF~Lt~~~L~Y~k~~~--~~~~g~I~L~~i~~ve~ 57 (98)
T cd01244 21 FKKRYFQLTTTHLSWAKDVQ--CKKSALIKLAAIKGTEP 57 (98)
T ss_pred CceeEEEECCCEEEEECCCC--CceeeeEEccceEEEEE
Confidence 46899999999997665433 33466799999998854
No 40
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=61.75 E-value=51 Score=22.89 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=41.3
Q ss_pred ceeeeEEEEecceEEEecCCc--cceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGA--KFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k--~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
.=++|.|++.+..|+=+..+. .... +-.|+|+.. .+...+.....|.|++++..-+-+.. .+++-..|=+.+|.
T Consensus 14 ~Wk~RwFvL~~g~L~Yyk~~~~~~~~~-~G~I~L~~~-~i~~~~~~~~~F~i~~~~~r~~~L~A-~s~~e~~~Wi~al~ 89 (91)
T cd01247 14 GWQDRYFVLKEGNLSYYKSEAEKSHGC-RGSIFLKKA-IIAAHEFDENRFDISVNENVVWYLRA-ENSQSRLLWMDSVV 89 (91)
T ss_pred CCceEEEEEECCEEEEEecCccCcCCC-cEEEECccc-EEEcCCCCCCEEEEEeCCCeEEEEEe-CCHHHHHHHHHHHh
Confidence 467999999999884443221 1112 555888874 33333334456788877655555543 22223344555544
No 41
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=59.47 E-value=64 Score=23.26 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=51.9
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEec--cCCCchhhhHHHHHh
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTII--SSEDRVGELVGALAS 173 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~--~~~~r~~E~v~~l~~ 173 (176)
+.++-.+.|+...|-..|... -.++.. .|+..|+-.+.-+....+|.+=..++.+-.+.+| ..++.-.|+...|.+
T Consensus 42 ~~~~v~l~vs~~gv~v~~~~~-~~~l~~-~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~a~~i~~~i~~ 119 (134)
T smart00462 42 EPQKVILSISSRGVKLIDEDT-KAVLHE-HPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKAAEDIALAIGQ 119 (134)
T ss_pred CCCEEEEEEECCcEEEEECCC-CeEEEE-ccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCchHHHHHHHHHH
Confidence 567778889999998888654 234344 8999999888877666676666666554223333 122334678888877
Q ss_pred hc
Q psy5801 174 RY 175 (176)
Q Consensus 174 ~~ 175 (176)
+|
T Consensus 120 aF 121 (134)
T smart00462 120 AF 121 (134)
T ss_pred HH
Confidence 76
No 42
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.89 E-value=39 Score=24.79 Aligned_cols=54 Identities=9% Similarity=0.034 Sum_probs=35.4
Q ss_pred CceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEec---CCCCcEEEEEeCC
Q psy5801 95 NRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVS---PGSDQLVVIHNNK 149 (176)
Q Consensus 95 ~K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS---~~~d~~~vih~~~ 149 (176)
+..++|.|++|+..||=+.... =|-.|--|||..+.--.+- +..-..|.++-|+
T Consensus 17 ggsK~~WFVLt~~~L~wykd~e-eKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd 73 (110)
T cd01256 17 GGSKDYWFVLTSESLSWYKDDE-EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPD 73 (110)
T ss_pred CCCcceEEEEecceeeeecccc-cccccceeeccccEEEeecccccCCCcEEEEEcCc
Confidence 4688999999999997664221 1223555899877544442 2233577888877
No 43
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.10 E-value=65 Score=22.90 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=49.7
Q ss_pred EEEEEEecCCceeeeEEEEecceEEEec-C--CccceeeeeeeeccceeeEEecCC---CCcEEEEEeCCCCcEEEEecc
Q psy5801 86 AFVHKTNKFNRCADRALLVTDFAVYKLD-S--GAKFKAMKRGMSLQEMTGLSVSPG---SDQLVVIHNNKGNDLVFTIIS 159 (176)
Q Consensus 86 ~~V~K~nr~~K~~~R~llvTd~~ly~ld-~--~k~~k~~k~~i~l~~i~~vsvS~~---~d~~~vih~~~~~D~~~~~~~ 159 (176)
....|..+++-.+.++|+.+|.-||--. + +..|++ +..+||..++ |.-... ..+.|-|.-|+ ..++++. +
T Consensus 6 G~L~K~~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~-~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~-ks~~l~A-~ 81 (99)
T cd01220 6 GCLLKLSKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRI-LGHLPLRGML-TEESEHEWGVPHCFTIFGGQ-CAITVAA-S 81 (99)
T ss_pred EEEEEEeCCCCceEEEEEccceEEEEEeecCCCceEEE-EEEEEcCceE-EeeccCCcCCceeEEEEcCC-eEEEEEC-C
Confidence 4577888877555567777887777542 1 113665 7779999885 332222 12456676664 4677765 3
Q ss_pred CCCchhhhHHHHHhh
Q psy5801 160 SEDRVGELVGALASR 174 (176)
Q Consensus 160 ~~~r~~E~v~~l~~~ 174 (176)
+.+-+.|-+..|.++
T Consensus 82 s~~Ek~~Wi~~i~~a 96 (99)
T cd01220 82 TRAEKEKWLADLSKA 96 (99)
T ss_pred CHHHHHHHHHHHHHH
Confidence 334446666665543
No 44
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=57.92 E-value=52 Score=21.72 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=44.0
Q ss_pred CceeeeEEEEecceEEEecCCccc--eeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHH
Q psy5801 95 NRCADRALLVTDFAVYKLDSGAKF--KAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 95 ~K~~~R~llvTd~~ly~ld~~k~~--k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
+.-+.|.+++.+..|+-+...... .+ +..|+|... .++..+...+.|-|..|++.-+.|+. .+++-..|=++.|.
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~~~~-~~~i~l~~~-~~~~~~~~~~~F~i~~~~~~~~~~~a-~s~~e~~~Wi~al~ 89 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMRGKP-RGTILLSGA-VISEDDSDDKCFTIDTGGDKTLHLRA-NSEEERQRWVDALE 89 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCCCCc-eEEEEeceE-EEEECCCCCcEEEEEcCCCCEEEEEC-CCHHHHHHHHHHHH
Confidence 356789999999999888654322 33 445888775 35555544455566666545566654 22233344444443
No 45
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=57.71 E-value=20 Score=33.89 Aligned_cols=56 Identities=11% Similarity=0.178 Sum_probs=44.4
Q ss_pred CceeEEEEEEEEEecCCceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEec
Q psy5801 79 EDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVS 136 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS 136 (176)
.+.|.....|..+....|..-+.++++|..+|..+.- -|.+++.++|.+|.+|.+=
T Consensus 28 Ye~IRa~EPCVVVSds~k~~f~~VVLSd~~vYLtEnP--Prsi~~av~lr~I~aIeLI 83 (617)
T PF15087_consen 28 YERIRAYEPCVVVSDSEKKTFMYVVLSDELVYLTENP--PRSIRRAVALRDIVAIELI 83 (617)
T ss_pred HhhhheeCceEEEecCCcceEEEEEecCcEEEeccCC--CceeeEeeeccceeeeeee
Confidence 3445666678888888888999999999999999821 1235888999999999984
No 46
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=57.57 E-value=46 Score=27.09 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.1
Q ss_pred eeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeecCCCce------EEEEcCCC
Q psy5801 16 ADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQL------VVIHNNKG 68 (176)
Q Consensus 16 ~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~~~d~~------~vih~~~~ 68 (176)
.+.++-||...|=..+... ..+..|+||-.| +.+..+-||| |++.++++
T Consensus 108 eevil~VSKyGiKvt~~d~--~~VL~RhpL~~I--vr~V~YdDGlG~g~~llAlK~~~~ 162 (200)
T PF10480_consen 108 EEVILSVSKYGIKVTDNDQ--RDVLHRHPLHEI--VRMVCYDDGLGAGKNLLALKVGDE 162 (200)
T ss_pred CeEEEEEeeccEEEeecCC--cceeeeeeeeeE--EEEEEEecCcCCcceEEEEEccCC
Confidence 5777888888877777532 345666999999 6666667765 66777765
No 47
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=55.81 E-value=76 Score=22.96 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=35.4
Q ss_pred ceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEe-ecCCCceEEEEcC
Q psy5801 14 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV-SPGSDQLVVIHNN 66 (176)
Q Consensus 14 K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsv-S~~~d~~~vih~~ 66 (176)
+.++=.|-||...|-.+|+.. ...+. ..|+..|+=.+. .+.....|.+..+
T Consensus 50 ~~~~V~l~vs~~gI~v~~~~t-~~~l~-~~~i~~Is~~~~~d~~~~~~Fafi~~ 101 (140)
T PF00640_consen 50 KPQKVTLNVSSDGIKVIDPDT-GEVLM-SHPIRRISFCAVGDPDDKRVFAFIAR 101 (140)
T ss_dssp TSEEEEEEEETTEEEEEETTT-TCEEE-EEEGGGEEEEEESSTTETTEEEEEEE
T ss_pred cCeEEEEEEcCCeEEEecCcc-ccccc-cCCccceEEEEecCCCcceEEEEEec
Confidence 667778889999999998754 33333 489999987777 4443446666433
No 48
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=55.80 E-value=63 Score=22.07 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=36.5
Q ss_pred ceeeeEEEEecc--eEEEecCCccceeeeeeeeccceeeEEecCC---------CCcEEEEEeCCCCcEEEEe
Q psy5801 96 RCADRALLVTDF--AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPG---------SDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 96 K~~~R~llvTd~--~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~---------~d~~~vih~~~~~D~~~~~ 157 (176)
.=+.|.|++++. .|+-++..+..+. +-.|+|++++.+..... ...+|.+..+ +.-+.|+.
T Consensus 14 ~WkkRwFvL~~~~~~L~Yy~~~~~~~~-~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~-~r~~~~~a 84 (101)
T cd01235 14 GWKPRWFVLDPDKHQLRYYDDFEDTAE-KGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTS-KRTYNFLA 84 (101)
T ss_pred CccceEEEEECCCCEEEEecCCCCCcc-ceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeC-CceEEEEC
Confidence 456789999843 5655553332333 56699999988876321 2345666655 34566654
No 49
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=53.37 E-value=20 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.535 Sum_probs=21.5
Q ss_pred EecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEe
Q psy5801 104 VTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHN 147 (176)
Q Consensus 104 vTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~ 147 (176)
+||-.|+++++.. .+..+.+||+ |+.||+|=
T Consensus 3 iTdVRirkv~~dg---------rmkA~vsvT~----D~efVvhd 33 (95)
T COG2088 3 ITDVRIRKVDTDG---------RMKAYVSVTL----DNEFVVHD 33 (95)
T ss_pred ceeEEEEEecCCC---------cEEEEEEEEe----cceEEEec
Confidence 6888888888652 2234566777 88888883
No 50
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.28 E-value=59 Score=23.88 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=33.9
Q ss_pred CceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeec--C-CCceEEEEcCCC
Q psy5801 13 NRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP--G-SDQLVVIHNNKG 68 (176)
Q Consensus 13 ~K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~--~-~d~~~vih~~~~ 68 (176)
|-..+|.++||+..+|=-+... -|-.|--|||.++.--.|-. + .-..|.++-|+.
T Consensus 17 ggsK~~WFVLt~~~L~wykd~e-eKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~ 74 (110)
T cd01256 17 GGSKDYWFVLTSESLSWYKDDE-EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDG 74 (110)
T ss_pred CCCcceEEEEecceeeeecccc-cccccceeeccccEEEeecccccCCCcEEEEEcCcc
Confidence 4678999999999998774221 12224448998775444432 1 224667777653
No 51
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=53.20 E-value=94 Score=23.27 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=53.5
Q ss_pred CceeEEEEEEEEEecCCceeeeEEEEecceEEEecCCc--ccee-eeeeeeccceeeEEecCC----CCcEEEEEeCCCC
Q psy5801 79 EDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGA--KFKA-MKRGMSLQEMTGLSVSPG----SDQLVVIHNNKGN 151 (176)
Q Consensus 79 ~~~ilfs~~V~K~nr~~K~~~R~llvTd~~ly~ld~~k--~~k~-~k~~i~l~~i~~vsvS~~----~d~~~vih~~~~~ 151 (176)
+|++.++- |...-.++.||..|..+|... +.|+ .+. +|++.|+.+|+-+- .|..+-|.+.+..
T Consensus 30 gE~I~~ay---------k~iRD~~vFTnkRlI~vD~QG~TGkK~~~~s-iPY~~I~~~siETAG~~DlD~Elki~i~~~~ 99 (124)
T PF08000_consen 30 GEEIEAAY---------KLIRDEIVFTNKRLILVDKQGITGKKVEYKS-IPYSSITHFSIETAGTFDLDSELKIWISGQG 99 (124)
T ss_dssp T--EEEEE---------EESSEEEEEESSEEEEEEEESSSSSEEEEEE-EEGGGEEEEEEEECSSTTSEEEEEEEETTES
T ss_pred CCeeeeee---------hhhceeEEEecChheEEecccCccceEEEEE-EehhhccEEEEEeCCcccCcccEEEEECCCc
Confidence 67776663 233447889999999998321 2233 244 99999999999543 3557777887654
Q ss_pred cE-EEEeccCCCchhhhHHHHHhh
Q psy5801 152 DL-VFTIISSEDRVGELVGALASR 174 (176)
Q Consensus 152 D~-~~~~~~~~~r~~E~v~~l~~~ 174 (176)
.- .+.+ .+...+.|+-..|.+.
T Consensus 100 ~~i~~~f-~k~~di~~i~k~L~~~ 122 (124)
T PF08000_consen 100 FPIEFEF-KKKTDIYEIYKALAEY 122 (124)
T ss_dssp SEEEEEE-GTTSHHHHHHHHHHHH
T ss_pred EEEEEec-CCCCCHHHHHHHHHHH
Confidence 32 3345 4455667777666653
No 52
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=52.61 E-value=11 Score=26.06 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=21.5
Q ss_pred eccceeeEEecCCCCcEEEEEeCCCCcEEEE
Q psy5801 126 SLQEMTGLSVSPGSDQLVVIHNNKGNDLVFT 156 (176)
Q Consensus 126 ~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~ 156 (176)
.+..|.+|.-|.+.|+.+++|++++--+.+.
T Consensus 23 ~f~sv~siRkSEl~d~~~iV~Lk~~~~~~~~ 53 (79)
T PF09625_consen 23 TFESVKSIRKSELRDGVYIVQLKKGEVLHFA 53 (79)
T ss_dssp TSTTEEEEEE-SS-TTEEEEEE-TT--EEET
T ss_pred HHHHHHHHHHhhcccceEEEEEecCCEEEEc
Confidence 4667889999999999999999876555553
No 53
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=52.59 E-value=91 Score=22.91 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=47.4
Q ss_pred eEEEEEEEEEecC-CceeeeEEEEecceEEEecC--Cc---------cceeeeeeeeccceeeEEecC---CCCcEEEEE
Q psy5801 82 VMFSAFVHKTNKF-NRCADRALLVTDFAVYKLDS--GA---------KFKAMKRGMSLQEMTGLSVSP---GSDQLVVIH 146 (176)
Q Consensus 82 ilfs~~V~K~nr~-~K~~~R~llvTd~~ly~ld~--~k---------~~k~~k~~i~l~~i~~vsvS~---~~d~~~vih 146 (176)
.+....+.|+... .+.|+|.+++=|..|.--.+ .+ .|+. |.++++..+.=..... ..+.| -|+
T Consensus 4 lI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~-k~~~~l~~~~V~d~~d~~~~knaF-~I~ 81 (112)
T cd01261 4 FIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRL-KEKFFMRKVDINDKPDSSEYKNAF-EII 81 (112)
T ss_pred ccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEE-EEEEeeeeeEEEEcCCCcccCceE-EEE
Confidence 3445566777753 46778877776666533221 10 2554 7779999876555532 23445 444
Q ss_pred eCCCCcEEEEeccCCCchhhhHHHH
Q psy5801 147 NNKGNDLVFTIISSEDRVGELVGAL 171 (176)
Q Consensus 147 ~~~~~D~~~~~~~~~~r~~E~v~~l 171 (176)
..++.-++++.. +.+-+.|=+..|
T Consensus 82 ~~~~~s~~l~Ak-t~eeK~~Wm~~l 105 (112)
T cd01261 82 LKDGNSVIFSAK-NAEEKNNWMAAL 105 (112)
T ss_pred cCCCCEEEEEEC-CHHHHHHHHHHH
Confidence 433445777763 333445544443
No 54
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=52.10 E-value=59 Score=22.62 Aligned_cols=59 Identities=7% Similarity=0.078 Sum_probs=33.3
Q ss_pred eeeEEEEecceEEEecCCcccee-eee--eeeccceeeEEec---CCCCcEEEEEeCCCCcEEEEe
Q psy5801 98 ADRALLVTDFAVYKLDSGAKFKA-MKR--GMSLQEMTGLSVS---PGSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 98 ~~R~llvTd~~ly~ld~~k~~k~-~k~--~i~l~~i~~vsvS---~~~d~~~vih~~~~~D~~~~~ 157 (176)
+.|.+++++..|+-+...+.... ... .|++... -+.+. +...+.|-|..+++.-++|+.
T Consensus 24 k~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~-~i~~~~~~~k~~~~F~l~~~~~~~~~f~a 88 (104)
T cd01253 24 DNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGA-QCEVASDYTKKKHVFRLRLPDGAEFLFQA 88 (104)
T ss_pred ceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCC-EEEecCCcccCceEEEEEecCCCEEEEEC
Confidence 67889999999977754321211 112 2333321 22332 234466777777777888876
No 55
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=51.51 E-value=76 Score=21.68 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=24.3
Q ss_pred ceeeeEEEEecCeEEEeccccccceeEeeeecccee
Q psy5801 14 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMT 49 (176)
Q Consensus 14 K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~ 49 (176)
.=+.|.++|++..+|.-..+...+ .+..|||+..+
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~-~~~~I~L~~~~ 53 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEK-AEGLIFLSGFT 53 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCc-cceEEEccCCE
Confidence 457899999999998885433122 34558888753
No 56
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=51.00 E-value=37 Score=23.56 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=26.5
Q ss_pred ecCCCCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHHhh
Q psy5801 135 VSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVGALASR 174 (176)
Q Consensus 135 vS~~~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~~~ 174 (176)
++. .+++++|+.++ ..+++.+ ++-.|++..|.+.
T Consensus 66 ~t~-~~~~i~I~t~~-~~y~isp----~~~~~fi~~l~~r 99 (100)
T PF10882_consen 66 ATR-NKNVILIKTKD-KTYVISP----EDPEEFIEALKKR 99 (100)
T ss_pred EEC-CCCEEEEEECC-ceEEEcC----CCHHHHHHHHHhc
Confidence 344 67899999987 7888865 6678999988764
No 57
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.63 E-value=1.1e+02 Score=22.92 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=34.5
Q ss_pred eeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEec-------CCCCcEEEEEeCCCCcEEEEe
Q psy5801 97 CADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVS-------PGSDQLVVIHNNKGNDLVFTI 157 (176)
Q Consensus 97 ~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS-------~~~d~~~vih~~~~~D~~~~~ 157 (176)
.+.+...+..++|.......+-|..|. |||++|-.|.-+ ..++.+|=|... .++++.
T Consensus 16 rKRhYWrLDsK~Itlf~~e~~skyyKe-IPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~---~~vY~V 79 (117)
T cd01239 16 RKKHYWRLDSKAITLYQEESGSRYYKE-IPLAEILSVSSNNGDSVLAKHPPHCFEIRTT---TNVYFV 79 (117)
T ss_pred eeeeEEEecCCeEEEEEcCCCCeeeEE-eehHHheEEeccCCCcCCCCCCCcEEEEEec---CEEEEe
Confidence 345667788888766643333445455 999999888633 135556666552 444444
No 58
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=48.53 E-value=21 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=21.4
Q ss_pred eeeeccceeeEEecCCC---CcEEEEEeCC
Q psy5801 123 RGMSLQEMTGLSVSPGS---DQLVVIHNNK 149 (176)
Q Consensus 123 ~~i~l~~i~~vsvS~~~---d~~~vih~~~ 149 (176)
+.|||++|+||+..+.. ++++=+.+++
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~ 56 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRG 56 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECC
Confidence 34999999999998544 6777777766
No 59
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=47.51 E-value=97 Score=21.88 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=34.4
Q ss_pred eeeeEEEEecCeEEEeccccccceeEeeeecccee-eEEeec------CCC--ceEEEEcCCCCceEEEE
Q psy5801 15 CADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMT-GLSVSP------GSD--QLVVIHNNKGNDLVFTI 75 (176)
Q Consensus 15 ~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~-~vsvS~------~~d--~~~vih~~~~~Dl~~~~ 75 (176)
-+.|.++|++..+|=-+.+..... +-.|+|+.+. |.+|.. ..+ ..|.|+.| +..+.+++
T Consensus 16 wkkRwFvL~~~~L~Yyk~~~d~~~-~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty~l~a 83 (103)
T cd01251 16 FKKRWFTLDDRRLMYFKDPLDAFA-KGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKFLFAC 83 (103)
T ss_pred ceeEEEEEeCCEEEEECCCCCcCc-CcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEEEEEC
Confidence 489999999999877754321122 3337887653 455532 111 15566666 45666554
No 60
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=46.67 E-value=64 Score=20.75 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=22.7
Q ss_pred EEEEecceEEEecCCccceeeeeeeeccceeeEEe
Q psy5801 101 ALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV 135 (176)
Q Consensus 101 ~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsv 135 (176)
.+.+|+.++.-.....+....+..||+.+|.+|.-
T Consensus 33 ~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 33 RLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEK 67 (69)
T ss_dssp EEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEE
T ss_pred EEEECCCEEEEEECCCCCceEEEEEEhHheeEEEE
Confidence 56788888866652211222366799999998864
No 61
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=46.25 E-value=1e+02 Score=21.76 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=41.9
Q ss_pred ceeeeEEEEecceE-------EEecCCccceeeeeeeeccceeeEEecC---CCC----cEEEEEeCCCCcEEEEeccCC
Q psy5801 96 RCADRALLVTDFAV-------YKLDSGAKFKAMKRGMSLQEMTGLSVSP---GSD----QLVVIHNNKGNDLVFTIISSE 161 (176)
Q Consensus 96 K~~~R~llvTd~~l-------y~ld~~k~~k~~k~~i~l~~i~~vsvS~---~~d----~~~vih~~~~~D~~~~~~~~~ 161 (176)
.=+.|.|++.+..+ +-+......++ +..|+|+.+..+..+. ..+ ..|.+..| +..+.++. .++
T Consensus 18 ~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~-~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~-~r~y~l~A-~s~ 94 (108)
T cd01266 18 KWVRRYFVLHCGDRERNLFALEYYKTSRKFKL-EFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETI-VRDLYLVA-KNE 94 (108)
T ss_pred CcEEEEEEEeccccCCCcceEEEECCCCCCcc-ceEEECCccEEEcccccccccCcccceEEEEEeC-CccEEEEE-CCH
Confidence 34788999998753 33332222345 5569999976653321 111 12455545 45777766 333
Q ss_pred CchhhhHHHHHhh
Q psy5801 162 DRVGELVGALASR 174 (176)
Q Consensus 162 ~r~~E~v~~l~~~ 174 (176)
+-..|=|..|.+.
T Consensus 95 ee~~~Wi~~I~~~ 107 (108)
T cd01266 95 EEMTLWVNCICKL 107 (108)
T ss_pred HHHHHHHHHHHhh
Confidence 4445566666553
No 62
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=46.19 E-value=24 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=24.3
Q ss_pred eeeeccceeeEEeecCC---CceEEEEcCCCCceE
Q psy5801 41 RGMSLQEMTGLSVSPGS---DQLVVIHNNKGNDLV 72 (176)
Q Consensus 41 r~i~l~~i~~vsvS~~~---d~~~vih~~~~~Dl~ 72 (176)
+.|||++|+||+..+.. ++++=+.+++..|-.
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~~~~ 61 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGADPL 61 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcCccc
Confidence 44999999999999544 777778877744444
No 63
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=42.49 E-value=48 Score=24.65 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.5
Q ss_pred eeccceeeEE---ecCCCCcEEEEEeCCCCcEEEEeccCCCchhhhHHHH
Q psy5801 125 MSLQEMTGLS---VSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVGAL 171 (176)
Q Consensus 125 i~l~~i~~vs---vS~~~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l 171 (176)
|-+.+|..|+ ..--+++++++.+.++.++++.+. + .+||..+.
T Consensus 46 i~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~---d-~i~l~qW~ 91 (116)
T cd01240 46 ITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLTNS---D-EIELKQWK 91 (116)
T ss_pred EEeehhhhcchhheeeccCceEEEEEcCCceEEEecC---C-cHHHHHHH
Confidence 6677777777 445788999999999999999751 2 25666554
No 64
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=42.26 E-value=1.7e+02 Score=23.00 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=59.7
Q ss_pred ecCeEEEeccccccceeEeeeecc---ceeeEEeecCCCceEEEEcCCCCceEEEEecCCceeEEEEEEEEEecC-Ccee
Q psy5801 23 TDFAVYKLDSGAKFKAMKRGMSLQ---EMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVMFSAFVHKTNKF-NRCA 98 (176)
Q Consensus 23 T~~~iy~ld~~~~~k~~kr~i~l~---~i~~vsvS~~~d~~~vih~~~~~Dl~~~~~~~~~~ilfs~~V~K~nr~-~K~~ 98 (176)
++..+|.++.+. .... .+++. .|..++-||.++.|.|++-..+. .+.+++-..+.++.-.-...|.- .-+.
T Consensus 37 ~~~~l~~~~~~~--~~~~-~i~l~~~~~I~~~~WsP~g~~favi~g~~~~--~v~lyd~~~~~i~~~~~~~~n~i~wsP~ 111 (194)
T PF08662_consen 37 GEFELFYLNEKN--IPVE-SIELKKEGPIHDVAWSPNGNEFAVIYGSMPA--KVTLYDVKGKKIFSFGTQPRNTISWSPD 111 (194)
T ss_pred eeEEEEEEecCC--Cccc-eeeccCCCceEEEEECcCCCEEEEEEccCCc--ccEEEcCcccEeEeecCCCceEEEECCC
Confidence 456778886432 1112 25553 38899999999999999853222 23333333333333222222221 1355
Q ss_pred eeEEEEec-----ceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEE
Q psy5801 99 DRALLVTD-----FAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVV 144 (176)
Q Consensus 99 ~R~llvTd-----~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~v 144 (176)
.+.+++.. ..+...|..+ .+.+.. ......+.+.-||.+.-++.
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~-~~~i~~-~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRK-KKKIST-FEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCC-CEEeec-cccCcEEEEEEcCCCCEEEE
Confidence 66777653 2355555543 333333 44445666666666654443
No 65
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=41.09 E-value=69 Score=30.47 Aligned_cols=45 Identities=11% Similarity=0.286 Sum_probs=35.3
Q ss_pred ecCCCceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeec
Q psy5801 9 TNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP 55 (176)
Q Consensus 9 ~nr~~K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~ 55 (176)
+-...|..=+.+++||..||+.+..- |.+.+.+++.+|.+|.+=.
T Consensus 40 VSds~k~~f~~VVLSd~~vYLtEnPP--rsi~~av~lr~I~aIeLI~ 84 (617)
T PF15087_consen 40 VSDSEKKTFMYVVLSDELVYLTENPP--RSIRRAVALRDIVAIELIN 84 (617)
T ss_pred EecCCcceEEEEEecCcEEEeccCCC--ceeeEeeeccceeeeeeec
Confidence 33444677889999999999998322 4578889999999998863
No 66
>PF09625 VP9: VP9 protein; InterPro: IPR018587 VP9 is a protein containing a ferredoxin fold. Two dimers come together to form one asymmetric unit which possesses a DNA recognition fold and specific metal binding sites possibly for zinc. It is postulated that being a non-structural protein VP9 is involved in the transcriptional regulation of the White spot syndrome virus (WSSV), from which it comes. WSSV is the major viral pathogen in shrimp aquaculture []. VP9 is found N-terminal to the IPR009766 from INTERPRO. ; PDB: 2ZUG_A 2GJ2_A 2GJI_A.
Probab=39.03 E-value=57 Score=22.65 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=20.7
Q ss_pred eccceeeEEeecCCCceEEEEcCCCCceEE
Q psy5801 44 SLQEMTGLSVSPGSDQLVVIHNNKGNDLVF 73 (176)
Q Consensus 44 ~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~ 73 (176)
.+..+.+|.-|.+.|+.+++|+.+.--+.+
T Consensus 23 ~f~sv~siRkSEl~d~~~iV~Lk~~~~~~~ 52 (79)
T PF09625_consen 23 TFESVKSIRKSELRDGVYIVQLKKGEVLHF 52 (79)
T ss_dssp TSTTEEEEEE-SS-TTEEEEEE-TT--EEE
T ss_pred HHHHHHHHHHhhcccceEEEEEecCCEEEE
Confidence 456788999999999999999987665553
No 67
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=38.44 E-value=1.8e+02 Score=22.22 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=51.5
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCCcEEEEec------cCCCchhhhHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTII------SSEDRVGELVG 169 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~D~~~~~~------~~~~r~~E~v~ 169 (176)
|++.-.|.|+...|..+|++++ .++-. .|+..|+=.+.-+..+.+|..=..++..-.+.+| .+.+|+.+.|+
T Consensus 48 k~~kv~L~VS~~Gi~vvd~~Tk-~~i~~-~~i~~ISfca~D~~d~r~FayIakd~~~~r~~CHvF~~~k~sa~~i~~avG 125 (138)
T cd01268 48 KPVKAVLWVSGDGLRVVDEKTK-GLIVD-QTIEKVSFCAPDRNFDRGFSYICRDGTTRRWMCHGFLAVKDTGERLSHAVG 125 (138)
T ss_pred CCCEEEEEEecCcEEEEecCCC-cEEEE-EeEEEEEEEecCCCCCcEEEEEecCCCcccEEEEEEEeeccchhHHHHHHH
Confidence 5677778899999999998652 23233 7888888888888888888888877543332222 22356666666
Q ss_pred HHHh
Q psy5801 170 ALAS 173 (176)
Q Consensus 170 ~l~~ 173 (176)
..-+
T Consensus 126 ~AF~ 129 (138)
T cd01268 126 CAFA 129 (138)
T ss_pred HHHH
Confidence 5433
No 68
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=38.00 E-value=1.5e+02 Score=21.07 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=26.5
Q ss_pred eeeeEEEEecCeEEEecccccc-ceeEeeeeccceeeEEee
Q psy5801 15 CADRALLVTDFAVYKLDSGAKF-KAMKRGMSLQEMTGLSVS 54 (176)
Q Consensus 15 ~~~R~lllT~~~iy~ld~~~~~-k~~kr~i~l~~i~~vsvS 54 (176)
-+.|.++|++..++--+.+... ...+-.|||..+..+...
T Consensus 21 wKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~ 61 (106)
T cd01238 21 YKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETV 61 (106)
T ss_pred ceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEe
Confidence 4679999999988666532211 123455999998766643
No 69
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=37.76 E-value=2.3e+02 Score=23.26 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=27.2
Q ss_pred ceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEe
Q psy5801 14 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV 53 (176)
Q Consensus 14 K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsv 53 (176)
+...--++||+..+-+.... .|+.|||++|..|.+
T Consensus 24 ~W~~~rIiLs~~rlvl~~~~-----~k~~Ipls~I~Di~~ 58 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFND-----GKITIPLSSIEDIGV 58 (221)
T ss_pred CcEEEEEEEecCEEEEEcCC-----CeEEEecceeEeccc
Confidence 56666778888888888643 256799999998887
No 70
>KOG2314|consensus
Probab=35.34 E-value=3.3e+02 Score=26.05 Aligned_cols=121 Identities=18% Similarity=0.358 Sum_probs=67.1
Q ss_pred eeeeccceeeEEeecCCCceEEEEcCCCCceE--EEEec--CCcee----EE-------------EEEEEEEecCCceee
Q psy5801 41 RGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLV--FTIIS--SEDRV----MF-------------SAFVHKTNKFNRCAD 99 (176)
Q Consensus 41 r~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~--~~~~~--~~~~i----lf-------------s~~V~K~nr~~K~~~ 99 (176)
+.+-++.|.+.|-||.+ ++++--+|+.++.- +.+-. ..+++ +| .-+|.|+.|+.|..
T Consensus 342 Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~- 419 (698)
T KOG2314|consen 342 KSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK- 419 (698)
T ss_pred cccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc-
Confidence 34888999999999984 68888888766543 11100 01111 11 23577888887665
Q ss_pred eEEEEecceEEEecCCccceeeeeeeeccce------eeEEecCCCCcEEEEEeCCC-CcEEEEeccCCCchhhhHHHH
Q psy5801 100 RALLVTDFAVYKLDSGAKFKAMKRGMSLQEM------TGLSVSPGSDQLVVIHNNKG-NDLVFTIISSEDRVGELVGAL 171 (176)
Q Consensus 100 R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i------~~vsvS~~~d~~~vih~~~~-~D~~~~~~~~~~r~~E~v~~l 171 (176)
+....||++- |++-++-||+..+ -+..--|.+|.|.|||.... .-.-++-........++|..|
T Consensus 420 -----~~g~f~n~eI---frireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 420 -----VKGQFSNLEI---FRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred -----ccceEeeEEE---EEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 2333444442 2221222444433 35555689999999999662 233232112134556666554
No 71
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.79 E-value=2.1e+02 Score=20.68 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=31.4
Q ss_pred ceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeec--CCCceEEEEcCCC
Q psy5801 14 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSP--GSDQLVVIHNNKG 68 (176)
Q Consensus 14 K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~--~~d~~~vih~~~~ 68 (176)
.-+.|.++|++..+|--....... .+..|||+++. |+... .....|-|+.|++
T Consensus 15 ~WkkRwfvL~~~~L~yyk~~~~~~-~~g~I~L~~~~-v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 15 TWKRRWFILTDNCLYYFEYTTDKE-PRGIIPLENVS-IREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CeEeEEEEEECCEEEEEcCCCCCC-ceEEEECCCcE-EEEcccCCCCeeEEEECCcc
Confidence 558999999999988776433122 34559998643 33321 1223355555543
No 72
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=30.64 E-value=2.2e+02 Score=20.92 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=47.3
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEecCCCCcEEEEEeCCCC-cEEEEec-cCCCc--hhhhHHHH
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGN-DLVFTII-SSEDR--VGELVGAL 171 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih~~~~~-D~~~~~~-~~~~r--~~E~v~~l 171 (176)
+.+.=.|.|+...|..+|+++ -.++ .-.|+.+|+=.+.-+....+|.+=..++. +-..|-. ..++. ..|+...|
T Consensus 43 k~~~V~L~IS~~gi~i~d~~t-~~~l-~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~ti 120 (132)
T cd01267 43 KIPKVELDISIKGVKIIDPKT-KTVL-HGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTI 120 (132)
T ss_pred CCCeEEEEEEcCcEEEEeCCC-CcEE-EEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHH
Confidence 556677889999999999865 2332 33688888777765555455555444322 2222211 12233 57777777
Q ss_pred Hhhc
Q psy5801 172 ASRY 175 (176)
Q Consensus 172 ~~~~ 175 (176)
-++|
T Consensus 121 g~AF 124 (132)
T cd01267 121 GQAF 124 (132)
T ss_pred HHHH
Confidence 7766
No 73
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.24 E-value=2.2e+02 Score=20.55 Aligned_cols=89 Identities=11% Similarity=0.146 Sum_probs=50.8
Q ss_pred EEEEEEEEEecCC-ceeeeE--EEEecceEEEe-cCCccceeeeeeeeccceeeEEec--CCCCcEEEEEeCCCCcEEEE
Q psy5801 83 MFSAFVHKTNKFN-RCADRA--LLVTDFAVYKL-DSGAKFKAMKRGMSLQEMTGLSVS--PGSDQLVVIHNNKGNDLVFT 156 (176)
Q Consensus 83 lfs~~V~K~nr~~-K~~~R~--llvTd~~ly~l-d~~k~~k~~k~~i~l~~i~~vsvS--~~~d~~~vih~~~~~D~~~~ 156 (176)
+++..+..+|-.. ++..|. |+..|.=+|-- -+++.++- -.-+||.+|.=+.+. +.--+.|.|..|++. .+++
T Consensus 3 i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~ky~~-~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s-~i~q 80 (100)
T cd01226 3 ILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAGKYVM-ESTYSLNSVAVVNVKDRENAKKVLKLLIFPES-RIYQ 80 (100)
T ss_pred EEcCcEEEechhhCCccceEEEEEeccEEEEEEecccceEEE-EEEEehHHeEEEecCCCcCcCceEEEEeCCcc-EEEE
Confidence 4455566676654 555554 55666555542 22333443 445889888766664 333455666666543 4444
Q ss_pred eccCCCchhhhHHHHHhh
Q psy5801 157 IISSEDRVGELVGALASR 174 (176)
Q Consensus 157 ~~~~~~r~~E~v~~l~~~ 174 (176)
. .+.+-+.|-++.|.++
T Consensus 81 a-es~~~K~eWl~~le~a 97 (100)
T cd01226 81 C-ESARIKTEWFEELEQA 97 (100)
T ss_pred e-CCHHHHHHHHHHHHHH
Confidence 3 3445567888877765
No 74
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function.
Probab=28.84 E-value=3.3e+02 Score=22.34 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=40.4
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEe--------cCCCCcEEEEEeCCCC---cEEEEeccCCC-c
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV--------SPGSDQLVVIHNNKGN---DLVFTIISSED-R 163 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsv--------S~~~d~~~vih~~~~~---D~~~~~~~~~~-r 163 (176)
+...--+++++..|-...... |+.|||++|..|.+ ....| .+-++...+. -+++.. .++ .
T Consensus 24 ~W~~~rIiLs~~rlvl~~~~~-----k~~Ipls~I~Di~~~~~~~~~~~~~~~-~~si~~~~~~~~~v~~i~~--~~~~~ 95 (221)
T PF04283_consen 24 KWVKGRIILSNDRLVLAFNDG-----KITIPLSSIEDIGVRLPPNQLLAFFSD-YVSIKYKSDEGERVILISP--EDSKT 95 (221)
T ss_pred CcEEEEEEEecCEEEEEcCCC-----eEEEecceeEecccccCccccccccCc-eEEEEEecCCCcEEEEEEc--CCccc
Confidence 334444556666665554332 55699999998888 33343 4466665432 223332 333 4
Q ss_pred hhhhHHHHHhh
Q psy5801 164 VGELVGALASR 174 (176)
Q Consensus 164 ~~E~v~~l~~~ 174 (176)
..+|...|.++
T Consensus 96 ~e~F~~~lf~~ 106 (221)
T PF04283_consen 96 IEKFETKLFRA 106 (221)
T ss_pred HHHHHHHHHHH
Confidence 57777666553
No 75
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=27.38 E-value=2.2e+02 Score=19.86 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=36.0
Q ss_pred CceeeeEEEEecCeEEEeccccccceeEeeeeccceeeEEeecCCCceEEEEcCCC
Q psy5801 13 NRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKG 68 (176)
Q Consensus 13 ~K~~~R~lllT~~~iy~ld~~~~~k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~ 68 (176)
.+.++=.|.||...|-.+|+.. ... -...|+..|+=.+.-+.....|.+-..++
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~-~~~-l~~~~l~~Is~~~~~~~~~~~F~~i~~~~ 92 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKT-KEV-LASHPIRRISFCAADPDDLRIFAFIAREP 92 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCC-CcE-EEeeccceEEEEECCCCCCcEEEEEEEcC
Confidence 3677888889999999998754 233 33478888876666554444555555443
No 76
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.57 E-value=2e+02 Score=18.75 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=36.7
Q ss_pred eeEEEecCC-CceeeeEEEEecCeEEEecccccc-ceeEeeeeccceeeEEeecCCCceEEEEcCCCCceEE
Q psy5801 4 AFVHKTNKF-NRCADRALLVTDFAVYKLDSGAKF-KAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVF 73 (176)
Q Consensus 4 ~~V~K~nr~-~K~~~R~lllT~~~iy~ld~~~~~-k~~kr~i~l~~i~~vsvS~~~d~~~vih~~~~~Dl~~ 73 (176)
..+.|-... +.-+.|.++|.+..++.-..+... ......|+|.... ++..+.....|-|-.|++.-+.+
T Consensus 3 G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~-~~~~~~~~~~F~i~~~~~~~~~~ 73 (91)
T cd01246 3 GWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAV-ISEDDSDDKCFTIDTGGDKTLHL 73 (91)
T ss_pred EEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEE-EEECCCCCcEEEEEcCCCCEEEE
Confidence 344554433 367899999999999887654312 0223447776642 44433323344444443333433
No 77
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=25.10 E-value=2.6e+02 Score=19.89 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=38.8
Q ss_pred eeeeEEEEecceEEEecCCc-cceeeeeeeeccceeeEEecCCC--CcEEEEEeCC-CCcEEEEeccCCCchhhhHHHHH
Q psy5801 97 CADRALLVTDFAVYKLDSGA-KFKAMKRGMSLQEMTGLSVSPGS--DQLVVIHNNK-GNDLVFTIISSEDRVGELVGALA 172 (176)
Q Consensus 97 ~~~R~llvTd~~ly~ld~~k-~~k~~k~~i~l~~i~~vsvS~~~--d~~~vih~~~-~~D~~~~~~~~~~r~~E~v~~l~ 172 (176)
.++|.+++=|..+.-.++.. .|+. |..|+++++ +|+=+..+ ..|-|.+.+. +.-+.++. .+.+-+.+-+..|.
T Consensus 16 ~~eR~vFLFe~~ll~~K~~~~~y~~-K~~i~~~~l-~i~e~~~~d~~~F~v~~~~~p~~~~~l~A-~s~e~K~~W~~~i~ 92 (97)
T cd01222 16 GKPRLLFLFQTMLLIAKPRGDKYQF-KAYIPCKNL-MLVEHLPGEPLCFRVIPFDDPKGALQLTA-RNREEKRIWTQQLK 92 (97)
T ss_pred CCceEEEEecccEEEEEecCCeeEE-EEEEEecce-EEecCCCCCCcEEEEEecCCCceEEEEEe-cCHHHHHHHHHHHH
Confidence 34576666666665554332 2554 777998887 45444333 3366666643 23455554 23333344344443
No 78
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=24.64 E-value=4.1e+02 Score=22.09 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=63.1
Q ss_pred eeEEEEecC--eEEEeccccccceeEeeeeccc---eeeEEeecCCCceEEEEcCCCCceEEEEecCCceeEEEEEEEEE
Q psy5801 17 DRALLVTDF--AVYKLDSGAKFKAMKRGMSLQE---MTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVMFSAFVHKT 91 (176)
Q Consensus 17 ~R~lllT~~--~iy~ld~~~~~k~~kr~i~l~~---i~~vsvS~~~d~~~vih~~~~~Dl~~~~~~~~~~ilfs~~V~K~ 91 (176)
.+.+.|+|. .||.++.. -++ -|+||+.. ..||+.. +++.+|+---..+.+..--.+.....+=...+.++
T Consensus 34 ~tLfaV~d~~~~i~els~~--G~v-lr~i~l~g~~D~EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~ 108 (248)
T PF06977_consen 34 GTLFAVQDEPGEIYELSLD--GKV-LRRIPLDGFGDYEGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKI 108 (248)
T ss_dssp TEEEEEETTTTEEEEEETT----E-EEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEEEEE
T ss_pred CeEEEEECCCCEEEEEcCC--CCE-EEEEeCCCCCCceeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchhhceEE
Confidence 457778876 46666643 244 45588764 7788884 55666775422333432111111111111112222
Q ss_pred e-----cCC---------ceeeeEEEEecc---eEEEecC--C-cccee------eeeeeeccceeeEEecCCCCcEEEE
Q psy5801 92 N-----KFN---------RCADRALLVTDF---AVYKLDS--G-AKFKA------MKRGMSLQEMTGLSVSPGSDQLVVI 145 (176)
Q Consensus 92 n-----r~~---------K~~~R~llvTd~---~ly~ld~--~-k~~k~------~k~~i~l~~i~~vsvS~~~d~~~vi 145 (176)
. ..| ....|.|++.+. .+|.++. . ....+ ......+.+++|+++-+..+.++|+
T Consensus 109 ~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliL 188 (248)
T PF06977_consen 109 SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLIL 188 (248)
T ss_dssp E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEE
T ss_pred ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEE
Confidence 1 111 223566666554 4666653 1 11111 1133567889999999999998888
Q ss_pred EeCCCCcEEEEe
Q psy5801 146 HNNKGNDLVFTI 157 (176)
Q Consensus 146 h~~~~~D~~~~~ 157 (176)
-- +.-.+++.
T Consensus 189 S~--es~~l~~~ 198 (248)
T PF06977_consen 189 SD--ESRLLLEL 198 (248)
T ss_dssp ET--TTTEEEEE
T ss_pred EC--CCCeEEEE
Confidence 43 55677766
No 79
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=23.86 E-value=1.1e+02 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=23.5
Q ss_pred eeeEEEEecCeEEEecc--------------ccccceeEeeeeccceeeEEeec
Q psy5801 16 ADRALLVTDFAVYKLDS--------------GAKFKAMKRGMSLQEMTGLSVSP 55 (176)
Q Consensus 16 ~~R~lllT~~~iy~ld~--------------~~~~k~~kr~i~l~~i~~vsvS~ 55 (176)
.+=.|.||+.++|..+. .......-+++|+++|..|.-=.
T Consensus 17 ~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RR 70 (106)
T PF14844_consen 17 IPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRR 70 (106)
T ss_dssp EEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEE
T ss_pred EEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHH
Confidence 45578899999998854 00012234448888888766543
No 80
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.42 E-value=99 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.5
Q ss_pred eEEeecCCCceEEEEcCCCCceEEEEec
Q psy5801 50 GLSVSPGSDQLVVIHNNKGNDLVFTIIS 77 (176)
Q Consensus 50 ~vsvS~~~d~~~vih~~~~~Dl~~~~~~ 77 (176)
++++..+++++|+++.+++.|+.-...+
T Consensus 47 ~~~i~~l~~~~fl~~F~~~~d~~~vl~~ 74 (153)
T PF14111_consen 47 GVKIRDLGDNLFLFQFESEEDRQRVLKG 74 (153)
T ss_pred cEEEEEeCCCeEEEEEEeccceeEEEec
Confidence 7899999999999999999999876643
No 81
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=22.75 E-value=1.8e+02 Score=23.84 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=35.6
Q ss_pred eeeccceeeEEecCC--CCcEEEEEeCCCCcEEEEeccCCCchhhhHHHHHhh
Q psy5801 124 GMSLQEMTGLSVSPG--SDQLVVIHNNKGNDLVFTIISSEDRVGELVGALASR 174 (176)
Q Consensus 124 ~i~l~~i~~vsvS~~--~d~~~vih~~~~~D~~~~~~~~~~r~~E~v~~l~~~ 174 (176)
.+||++|.++.+++. +-.++||...++ +-.-.++..+.=..||+..|.++
T Consensus 115 sv~lsdl~Si~~~~p~~G~~~lv~~~kdG-~~~p~L~Fh~gg~~~fl~~L~~~ 166 (213)
T PF12068_consen 115 SVPLSDLKSIRVSKPSLGWWYLVFILKDG-TSLPPLHFHDGGSKEFLKSLQRY 166 (213)
T ss_pred EEEhhheeeEEecCCCCCceEEEEEecCC-CccCceEEecCCHHHHHHHHHhh
Confidence 489999999999976 556889999865 44333332334457888888765
No 82
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=22.24 E-value=3.2e+02 Score=19.94 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=34.5
Q ss_pred ceeEEEecCCC------ceeeeEEEEecCeEEEe--c--ccc-cc-ceeEeeeeccceeeEEeecCCC
Q psy5801 3 SAFVHKTNKFN------RCADRALLVTDFAVYKL--D--SGA-KF-KAMKRGMSLQEMTGLSVSPGSD 58 (176)
Q Consensus 3 s~~V~K~nr~~------K~~~R~lllT~~~iy~l--d--~~~-~~-k~~kr~i~l~~i~~vsvS~~~d 58 (176)
.+...|+.|++ ++..|.+-|....-.+. + |.. .. ....+.+++.+|..|.-.+..+
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~ 79 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSP 79 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCC
Confidence 35678999998 99999999987544433 2 111 00 1112338888887776554443
No 83
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.84 E-value=3.3e+02 Score=19.62 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=41.3
Q ss_pred EEEEEecCCceeeeEEEEecceEEE-ec----CC-ccceeeeeeeeccceeeEEecCCCCcEEEEE-eCCCCcEEEEecc
Q psy5801 87 FVHKTNKFNRCADRALLVTDFAVYK-LD----SG-AKFKAMKRGMSLQEMTGLSVSPGSDQLVVIH-NNKGNDLVFTIIS 159 (176)
Q Consensus 87 ~V~K~nr~~K~~~R~llvTd~~ly~-ld----~~-k~~k~~k~~i~l~~i~~vsvS~~~d~~~vih-~~~~~D~~~~~~~ 159 (176)
.+.|+.+..+.....|+.+|.-+|- +. .+ ++|+. +..|||.+++=-++ + +=+| -|+..=.+++.
T Consensus 8 ~lvel~~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~-~w~IPL~dl~~~~~-~-----~~~~~~~~KSf~~~as-- 78 (96)
T cd01228 8 FLVELVEGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDC-KWYIPLADLSFPSE-P-----FRIHNKNGKSYTFLLS-- 78 (96)
T ss_pred eeeeehhCCCcceEEEeeccEEEEEEeeeccCccccccce-eEEEEhHHheecch-h-----hhccccCCceEEEEec--
Confidence 4566665554455566666655532 21 11 23554 77799999864444 1 2222 34443344443
Q ss_pred CCCchhhhHHHHHhh
Q psy5801 160 SEDRVGELVGALASR 174 (176)
Q Consensus 160 ~~~r~~E~v~~l~~~ 174 (176)
++.-.+|-+..|.++
T Consensus 79 S~~Er~eW~~hI~~~ 93 (96)
T cd01228 79 SDYERSEWRESIQKL 93 (96)
T ss_pred CHHHHHHHHHHHHHH
Confidence 333347777776553
No 84
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=20.43 E-value=2.3e+02 Score=17.54 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=25.1
Q ss_pred ceeeeEEEEecceEEEecCCccceeeeeeeeccceeeEEe
Q psy5801 96 RCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSV 135 (176)
Q Consensus 96 K~~~R~llvTd~~ly~ld~~k~~k~~k~~i~l~~i~~vsv 135 (176)
-.+.|. .+|+.+++-....-+....+..||+.+|..|.-
T Consensus 21 ~~~G~l-yiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k 59 (61)
T smart00568 21 PVQGRL-YISNYRLCFRSDLPGKLTPKVVIPLADITRIEK 59 (61)
T ss_pred cccEEE-EEECCEEEEEccCCCCeeEEEEEEHHHeeEEEE
Confidence 445544 789999987763221212156699999988764
No 85
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.22 E-value=3.6e+02 Score=19.73 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=31.4
Q ss_pred cceeEEEecCC-CceeeeEEEEecCeEEEecccc-----------ccceeEeeeeccceeeEEe
Q psy5801 2 FSAFVHKTNKF-NRCADRALLVTDFAVYKLDSGA-----------KFKAMKRGMSLQEMTGLSV 53 (176)
Q Consensus 2 fs~~V~K~nr~-~K~~~R~lllT~~~iy~ld~~~-----------~~k~~kr~i~l~~i~~vsv 53 (176)
....+.|+... ++.|+|.+.|=|..+..-.+.. .+ .+|.++++..+.=...
T Consensus 6 ~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y-~~k~~~~l~~~~V~d~ 68 (112)
T cd01261 6 MEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEY-RLKEKFFMRKVDINDK 68 (112)
T ss_pred ccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceE-EEEEEEeeeeeEEEEc
Confidence 34567888864 4788998888777664433211 12 3466788887754433
Done!