RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5801
(176 letters)
>gnl|CDD|218855 pfam06017, Myosin_TH1, Myosin tail.
Length = 199
Score = 88.1 bits (219), Expect = 4e-22
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 64 HNNKGNDLVFTIISSEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLD----SGAKFK 119
N K V + +E +V+F+ V+K N+ + + R LL+TD A+Y + K
Sbjct: 33 ENPKLQKAVGSEEGNE-KVLFADKVNKVNRSGKPSKRDLLLTDKALYLVGREKVKDQKTY 91
Query: 120 AMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVGALASRY 175
+KR + L E+T +S+SP D L VIH + DLV D ELV L Y
Sbjct: 92 VLKRRIPLSEITSVSLSPLQDDLFVIHVSGKGDLVLES----DFKTELVTVLCKHY 143
Score = 72.7 bits (179), Expect = 2e-16
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 2 FSAFVHKTNKFNRCADRALLVTDFAVYKLD----SGAKFKAMKRGMSLQEMTGLSVSPGS 57
F+ V+K N+ + + R LL+TD A+Y + K +KR + L E+T +S+SP
Sbjct: 52 FADKVNKVNRSGKPSKRDLLLTDKALYLVGREKVKDQKTYVLKRRIPLSEITSVSLSPLQ 111
Query: 58 DQLVVIHNNKGNDLVF 73
D L VIH + DLV
Sbjct: 112 DDLFVIHVSGKGDLVL 127
>gnl|CDD|216448 pfam01347, Vitellogenin_N, Lipoprotein amino terminal region. This
family contains regions from: Vitellogenin, Microsomal
triglyceride transfer protein and apolipoprotein B-100.
These proteins are all involved in lipid transport. This
family contains the LV1n chain from lipovitellin, that
contains two structural domains.
Length = 579
Score = 31.9 bits (73), Expect = 0.14
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 6 VHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHN 65
V KT N C R A Y A++ ++ +VS + ++
Sbjct: 159 VTKTKNLNNCQQRIAYHFGLAGY-----AEWCCGTNQKG-NFLSSSAVS----RYIL--- 205
Query: 66 NKGNDLVFTIISSE--DRVMFSAFVHKTNK 93
KG D F I S+E ++V+ S F++ + K
Sbjct: 206 -KGTDNGFLIQSAETTEKVLVSPFLYNSQK 234
Score = 28.0 bits (63), Expect = 3.0
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 14/74 (18%)
Query: 88 VHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHN 147
V KT N C R A Y A++ ++ +VS + ++
Sbjct: 159 VTKTKNLNNCQQRIAYHFGLAGY-----AEWCCGTNQKG-NFLSSSAVS----RYIL--- 205
Query: 148 NKGNDLVFTIISSE 161
KG D F I S+E
Sbjct: 206 -KGTDNGFLIQSAE 218
>gnl|CDD|115459 pfam06802, DUF1231, Protein of unknown function (DUF1231). This
family consists of several Orthopoxvirus specific
proteins predominantly of around 340 residues in length.
This family contains both B17 and B15 proteins, the
function of which are unknown.
Length = 340
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 8 KTNKFNRCADRALLVTDFAVYKL 30
K K NRCAD A+++ F +KL
Sbjct: 132 KVKKLNRCADHAIVINPFVKFKL 154
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 90 KTNKFNRCADRALLVTDFAVYKL 112
K K NRCAD A+++ F +KL
Sbjct: 132 KVKKLNRCADHAIVINPFVKFKL 154
>gnl|CDD|177532 PHA03115, PHA03115, hypothetical protein; Provisional.
Length = 340
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 8 KTNKFNRCADRALLVTDFAVYKL 30
K K NRCAD A+++ F +KL
Sbjct: 132 KVKKLNRCADHAIVINPFVKFKL 154
Score = 28.8 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 90 KTNKFNRCADRALLVTDFAVYKL 112
K K NRCAD A+++ F +KL
Sbjct: 132 KVKKLNRCADHAIVINPFVKFKL 154
>gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate
dehydrogenase; Provisional.
Length = 341
Score = 27.4 bits (61), Expect = 3.7
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 110 YKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDR---VGE 166
Y L G +AM +L+EMT L V+ G + DL+ T S R VGE
Sbjct: 206 YSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGE 265
Query: 167 LVGA 170
+GA
Sbjct: 266 QLGA 269
>gnl|CDD|227042 COG4698, COG4698, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 197
Score = 27.4 bits (61), Expect = 3.7
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 135 VSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELV 168
+SP + + ++ ++ F I ++ ++ EL+
Sbjct: 34 LSPREEPTHLEDASEKSEKSFQITTTRSQLNELI 67
>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA)
domain C_RZF-like. This group includes various PA
domain-containing proteins similar to C-RZF (chicken
embryo RING zinc finger) protein. These proteins contain
a C3H2C3 RING finger. C-RZF is expressed in embryo cells
and is restricted mainly to brain and heart, it is
localized to both the nucleus and endosomes. Additional
C3H2C3 RING finger proteins belonging to this group,
include Arabidopsis ReMembR-H2 protein and mouse
sperizin. ReMembR-H2 is likely to be an integral
membrane protein, and to traffic through the endosomal
pathway. Sperizin is expressed in haploid germ cells and
localized in the cytoplasm, it may participate in
spermatogenesis. The significance of the PA domain to
these proteins has not been ascertained. It may be a
protein-protein interaction domain. At peptidase active
sites, the PA domain may participate in substrate
binding and/or promoting conformational changes, which
influence the stability and accessibility of the site to
substrate.
Length = 153
Score = 26.5 bits (59), Expect = 5.3
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 59 QLVVIHNNKGNDLVFTIISSED 80
+ +++N++ NDL+ + ++
Sbjct: 93 KAAIVYNDESNDLISMSGNDQE 114
Score = 26.5 bits (59), Expect = 5.3
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 141 QLVVIHNNKGNDLVFTIISSED 162
+ +++N++ NDL+ + ++
Sbjct: 93 KAAIVYNDESNDLISMSGNDQE 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.375
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,549,496
Number of extensions: 755900
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 14
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.7 bits)