RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5801
         (176 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.082
 Identities = 32/172 (18%), Positives = 52/172 (30%), Gaps = 63/172 (36%)

Query: 19   ALLVTDFAVYKL-------DSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDL 71
            AL + + A ++         + A F A   G SL E   L  S                 
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATF-A---GHSLGEYAAL-ASLAD-------------- 1775

Query: 72   VFTIISSEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAM--------KR 123
            V +I   E  V     V           R + +   AV + + G     M          
Sbjct: 1776 VMSI---ESLV---EVVFY---------RGMTMQV-AVPRDELGRSNYGMIAINPGRVAA 1819

Query: 124  GMSLQEMTGL--SVSPGSDQLVVI--HNNKGNDLVFTIISSEDRVGELVGAL 171
              S + +  +   V   +  LV I  +N +        +++    G+L  AL
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQ----QYVAA----GDLR-AL 1862



 Score = 28.9 bits (64), Expect = 0.97
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 17/106 (16%)

Query: 45  LQEMTGLSVSPGSDQLV--VIHNNKGNDL---VFTIISSEDRVMFSAFVH--KTNKFNRC 97
            +++   +VS  +  +   V     G+DL     +I       +    V    T +F   
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF--- 496

Query: 98  ADRALLVTDF---AVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSD 140
             +A  + DF       L  G      K G  ++ +   ++    D
Sbjct: 497 --KATHILDFGPGGASGL--GVLTHRNKDGTGVRVIVAGTLDINPD 538



 Score = 26.9 bits (59), Expect = 4.5
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 67  KGND---LVFTIISSEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKR 123
           +GND   L   ++   D       + KT +  +    A ++      K  + A F+A+  
Sbjct: 97  EGNDIHALAAKLLQEND-----TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151

Query: 124 G 124
           G
Sbjct: 152 G 152


>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative,
           dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x
           morifolium} PDB: 2e1u_A 2e1t_A
          Length = 454

 Score = 30.7 bits (69), Expect = 0.27
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 133 LSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVGELVG 169
           L V P   +   I   +G+ +  T       + EL G
Sbjct: 83  LVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTG 119



 Score = 28.0 bits (62), Expect = 2.1
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 51  LSVSPGSDQLVVIHNNKGNDLVFTIISS 78
           L V P   +   I   +G+ +  T    
Sbjct: 83  LVVYPAPTKKPEICYVEGDSVAVTFAEC 110


>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA,
          IMP4, U3 snoRNP, ribosomal biogenesis binding,
          structural genomics, NPPSFA; 1.80A {Aeropyrum pernix}
          SCOP: c.51.1.2
          Length = 217

 Score = 25.7 bits (56), Expect = 8.5
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 39 MKRG-MSLQEMTGLSVSPGSDQLVVIHNNKGN 69
            RG  S++E+   ++  G+D++VV+   +GN
Sbjct: 65 FTRGHYSMEELAREAIIRGADRIVVVGERRGN 96



 Score = 25.7 bits (56), Expect = 8.5
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 121 MKRG-MSLQEMTGLSVSPGSDQLVVIHNNKGN 151
             RG  S++E+   ++  G+D++VV+   +GN
Sbjct: 65  FTRGHYSMEELAREAIIRGADRIVVVGERRGN 96


>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller
           fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB:
           1v04_A* 3srg_A*
          Length = 355

 Score = 25.9 bits (56), Expect = 9.2
 Identities = 9/89 (10%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 69  NDLVFTIISSEDRVMFSAFVHKTNKFNRCADRALLVTDFAVYKLDSGAKFKAMKRGMSLQ 128
           ND+V       +    +   +  + + +  +  L +    V            +      
Sbjct: 168 NDIVAV---GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG---FD 221

Query: 129 EMTGLSVSPGSDQLVVIHNNKGNDLVFTI 157
              G+++SP    + +         V+  
Sbjct: 222 FANGINISPDGKYVYIAELLAHKIHVYEK 250


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,512,884
Number of extensions: 137128
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 12
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)