RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5801
         (176 letters)



>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human
           rhinovirus 2 [TaxId: 12130]}
          Length = 180

 Score = 26.4 bits (58), Expect = 1.5
 Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 21/110 (19%)

Query: 44  SLQEMTGLSVSPGSDQLVVI--HNNKGNDLVFTIISSEDRVMFSAFVHKTNKFNRCADRA 101
              + TGL V    D+ VV+  H + G ++    I+            K        ++ 
Sbjct: 21  ENGKFTGLGVY---DRFVVVPTHADPGKEIQVDGIT-----------TKVIDSYDLYNKN 66

Query: 102 LLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGN 151
            +  +  V KLD   KF+ ++R +   E         +  L ++ N    
Sbjct: 67  GIKLEITVLKLDRNEKFRDIRRYIPNNEDDY-----PNCNLALLANQPEP 111



 Score = 24.5 bits (53), Expect = 6.3
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 16  ADRALLVTDFAVYKLDSGAKFKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTI 75
            ++  +  +  V KLD   KF+ ++R +   E    + +      + +  N+      TI
Sbjct: 63  YNKNGIKLEITVLKLDRNEKFRDIRRYIPNNEDDYPNCN------LALLANQP---EPTI 113

Query: 76  ISSEDRVMFS 85
           I+  D V + 
Sbjct: 114 INVGDVVSYG 123


>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 143

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 30  LDSGAKFKAMKRGMSLQEMTGLS----VSPGSDQLVVIHNNKGNDLVFTIISS 78
           L    KF+  + G+   +   L     + P    +VV+ N    D+  TI   
Sbjct: 69  LQPEQKFQKQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDP 121



 Score = 25.6 bits (56), Expect = 2.3
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 112 LDSGAKFKAMKRGMSLQEMTGLS----VSPGSDQLVVIHNNKGNDLVFTIISS 160
           L    KF+  + G+   +   L     + P    +VV+ N    D+  TI   
Sbjct: 69  LQPEQKFQKQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDP 121


>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease
           virus [TaxId: 12110]}
          Length = 156

 Score = 25.6 bits (56), Expect = 2.6
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 118 FKAMKRGMSLQEMTGLSVSPGSDQLVVIHNNKGNDLVFTIISSEDRVGEL 167
            +A+K+   L+++TGL +  G    +VI N K   L+ T I +  R  E+
Sbjct: 52  LEAIKQ---LEDLTGLELHEGGPPALVIWNIK--HLLHTGIGTASRPSEV 96


>d3bwuc2 b.7.2.1 (C:122-205) FimC {Escherichia coli [TaxId: 562]}
          Length = 84

 Score = 23.2 bits (50), Expect = 8.8
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 53 VSPGSDQLVVIHNNKGNDLVFTII 76
          V P  +  V + ++ G+++ +  I
Sbjct: 46 VPPMGESTVKLPSDAGSNITYRTI 69



 Score = 23.2 bits (50), Expect = 8.8
 Identities = 5/24 (20%), Positives = 13/24 (54%)

Query: 135 VSPGSDQLVVIHNNKGNDLVFTII 158
           V P  +  V + ++ G+++ +  I
Sbjct: 46  VPPMGESTVKLPSDAGSNITYRTI 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0664    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,692
Number of extensions: 22996
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 9
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)