BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5804
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VGW6|MCM5_DROME DNA replication licensing factor Mcm5 OS=Drosophila melanogaster
GN=Mcm5 PE=1 SV=1
Length = 733
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYN 60
MEGFDDAG+FFSDNFG ++QQ Q+NLQ+VK+K+KEF+R F+E NF YKYRD+LKRNY
Sbjct: 1 MEGFDDAGVFFSDNFGGDNQQDA-QINLQAVKKKYKEFIRTFNEENFFYKYRDTLKRNYL 59
Query: 61 LGQYFLEINIEDLTSF 76
G+YFLEI +EDL F
Sbjct: 60 NGRYFLEIEMEDLVGF 75
>sp|P33992|MCM5_HUMAN DNA replication licensing factor MCM5 OS=Homo sapiens GN=MCM5
PE=1 SV=5
Length = 734
Score = 95.9 bits (237), Expect = 7e-20, Method: Composition-based stats.
Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
M GFDD GIF+SD+FG + Q Q ++R+FKEFLRQ+ G F +KYRD LK
Sbjct: 1 MSGFDDPGIFYSDSFGGDAQADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 57 RNYNLGQYFLEINIEDLTSF 76
R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80
>sp|Q0V8B7|MCM5_BOVIN DNA replication licensing factor MCM5 OS=Bos taurus GN=MCM5 PE=2
SV=1
Length = 734
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
M GFDD GIF+SD+FG ++ Q ++R+FKEFLRQ+ G F +KYRD LK
Sbjct: 1 MSGFDDPGIFYSDSFGGDNAADEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 57 RNYNLGQYFLEINIEDLTSF 76
R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80
>sp|P49718|MCM5_MOUSE DNA replication licensing factor MCM5 OS=Mus musculus GN=Mcm5
PE=2 SV=1
Length = 733
Score = 92.8 bits (229), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 4/80 (5%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGN----FNYKYRDSLK 56
M GFDD GIF+SD+FG + Q ++R+FKEFLRQ+ G F +KYRD LK
Sbjct: 1 MSGFDDPGIFYSDSFGGDPGAEEGQARKSQLQRRFKEFLRQYRVGTDRTGFTFKYRDELK 60
Query: 57 RNYNLGQYFLEINIEDLTSF 76
R+YNLG+Y++E+ +EDL SF
Sbjct: 61 RHYNLGEYWIEVEMEDLASF 80
>sp|P55862|MCM5A_XENLA DNA replication licensing factor mcm5-A OS=Xenopus laevis
GN=mcm5-a PE=1 SV=2
Length = 735
Score = 90.1 bits (222), Expect = 3e-18, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 7/82 (8%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
M GFDD G+++SD+FG E QQ G Q +K++F+EFLRQ+ G F +KYRD
Sbjct: 1 MSGFDDLGVYYSDSFGGE-QQVGDDGQAKKSQLKKRFREFLRQYRIGTDRTGFTFKYRDE 59
Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81
>sp|Q561P5|MCM5_XENTR DNA replication licensing factor mcm5 OS=Xenopus tropicalis
GN=mcm5 PE=2 SV=1
Length = 735
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 7/82 (8%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
M GFDD GI++SD+FG E Q G Q +K++F+EFLRQ+ G F +KYRD
Sbjct: 1 MSGFDDLGIYYSDSFGGE-QPVGDDGQAKKSQLKKRFREFLRQYRVGTDRTGFTFKYRDE 59
Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81
>sp|Q6PCI7|MCM5B_XENLA DNA replication licensing factor mcm5-B OS=Xenopus laevis
GN=mcm5-b PE=2 SV=1
Length = 735
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 7/82 (8%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGI--QVNLQSVKRKFKEFLRQFHEGN----FNYKYRDS 54
M GFDD GI++SD+FG E Q G Q +K++F+EFLRQ+ G F +KYRD
Sbjct: 1 MSGFDDLGIYYSDSFGGE-QPVGDDGQAKKSQLKKRFREFLRQYRVGTDRTGFTFKYRDE 59
Query: 55 LKRNYNLGQYFLEINIEDLTSF 76
LKR+YNLG+Y++E+ +EDL SF
Sbjct: 60 LKRHYNLGEYWIEVEMEDLASF 81
>sp|Q21902|MCM5_CAEEL DNA replication licensing factor mcm-5 OS=Caenorhabditis elegans
GN=mcm-5 PE=3 SV=1
Length = 759
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 1 MEGFDDAGIFFSDNF----GAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLK 56
M D+ GI++ + F G D + + + +F+ F+R F G F YRD LK
Sbjct: 1 MSNLDNPGIYYQERFFANDGVPDTGRELIAEYRQLITQFRNFIRDFSTGGFGMIYRDQLK 60
Query: 57 RNYNLGQYFLEINIEDLTSF 76
RNY +Y LEIN+ L +F
Sbjct: 61 RNYFSHEYRLEINLNHLKNF 80
>sp|Q54CP4|MCM5_DICDI DNA replication licensing factor mcm5 OS=Dictyostelium discoideum
GN=mcm5 PE=3 SV=1
Length = 757
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 1 MEGFDDAGIFFSDNFGAEDQQSGIQ-VNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY 59
M GFD+ + S G + V SV+ FK F+ ++ + + + Y++ L+++Y
Sbjct: 1 MSGFDEGNVTVSGGGGKGGFKKNNGFVEDTSVRDLFKRFINEWKDQDNVFIYKEQLRQHY 60
Query: 60 NLGQYFLEINIEDLTSF 76
NLG +++E++I+ LT F
Sbjct: 61 NLGWHYIEVSIDHLTDF 77
>sp|O86088|PBPA_NEICI Penicillin-binding protein 1A OS=Neisseria cinerea GN=mrcA PE=3
SV=1
Length = 798
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 14 NFGAEDQQSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEI 68
N A QSG Q V + F K F R+F+E YK SL ++ L YF +I
Sbjct: 110 NIVAGGVQSGASTITQQVAKNFYLSSEKTFTRKFNEALLAYKIEQSLSKDKILELYFNQI 169
>sp|O87579|PBPA_NEILA Penicillin-binding protein 1A OS=Neisseria lactamica GN=mrcA PE=3
SV=1
Length = 798
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 14 NFGAEDQQSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEI 68
N + QSG Q V + F K F R+F+E YK SL ++ L YF +I
Sbjct: 110 NIVSGSMQSGASTITQQVAKNFYLSSEKTFTRKFNEALLAYKIEQSLSKDKILELYFNQI 169
>sp|O87626|PBPA_NEIFL Penicillin-binding protein 1A OS=Neisseria flavescens GN=mrcA PE=3
SV=1
Length = 798
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 14 NFGAEDQQSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEI 68
N A QSG Q V + F + F R+F+E YK SL ++ L YF
Sbjct: 110 NVMAGGVQSGASTITQQVAKNFYLSSERSFTRKFNEALLAYKIEQSLSKDKILELYF--- 166
Query: 69 NIEDLTSFFINNIDSLKRNYNL---GQYFLEINIEDLT 103
N I +R Y Q + N+ DLT
Sbjct: 167 ----------NQIYLGQRAYGFASAAQTYFNKNVNDLT 194
>sp|P0A0Z6|PBPA_NEIMB Penicillin-binding protein 1A OS=Neisseria meningitidis serogroup B
(strain MC58) GN=mrcA PE=3 SV=1
Length = 798
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 21 QSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS 75
QSG Q V + F K F R+F+E YK SL ++ L YF
Sbjct: 117 QSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYF---------- 166
Query: 76 FFINNIDSLKRNYNL---GQYFLEINIEDLT 103
N I +R Y Q + N+ DLT
Sbjct: 167 ---NQIYLGQRAYGFASAAQIYFNKNVRDLT 194
>sp|P0A0Z5|PBPA_NEIMA Penicillin-binding protein 1A OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=mrcA PE=3 SV=1
Length = 798
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 21 QSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS 75
QSG Q V + F K F R+F+E YK SL ++ L YF
Sbjct: 117 QSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYF---------- 166
Query: 76 FFINNIDSLKRNYNL---GQYFLEINIEDLT 103
N I +R Y Q + N+ DLT
Sbjct: 167 ---NQIYLGQRAYGFASAAQIYFNKNVRDLT 194
>sp|O05131|PBPA_NEIGO Penicillin-binding protein 1A OS=Neisseria gonorrhoeae GN=mrcA PE=1
SV=3
Length = 798
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 21 QSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS 75
QSG Q V + F K F R+F+E YK SL ++ L YF
Sbjct: 117 QSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYF---------- 166
Query: 76 FFINNIDSLKRNYNL---GQYFLEINIEDLT 103
N I +R Y Q + N+ DLT
Sbjct: 167 ---NQIYLGQRAYGFASAAQIYFNKNVRDLT 194
>sp|Q5FAC7|PBPA_NEIG1 Penicillin-binding protein 1A OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=mrcA PE=3 SV=3
Length = 798
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 21/91 (23%)
Query: 21 QSGIQVNLQSVKRKF-----KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS 75
QSG Q V + F K F R+F+E YK SL ++ L YF
Sbjct: 117 QSGASTITQQVAKNFYLSSEKTFTRKFNEVLLAYKIEQSLSKDKILELYF---------- 166
Query: 76 FFINNIDSLKRNYNL---GQYFLEINIEDLT 103
N I +R Y Q + N+ DLT
Sbjct: 167 ---NQIYLGQRAYGFASAAQIYFNKNVRDLT 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,503,241
Number of Sequences: 539616
Number of extensions: 1526433
Number of successful extensions: 4045
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4004
Number of HSP's gapped (non-prelim): 47
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)