Query psy5804
Match_columns 113
No_of_seqs 111 out of 509
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:23:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0481|consensus 99.8 1.4E-19 3.1E-24 147.0 10.4 102 2-106 1-102 (729)
2 PF14551 MCM_N: MCM N-terminal 99.6 5.6E-17 1.2E-21 108.3 2.7 73 31-106 1-73 (121)
3 PTZ00111 DNA replication licen 99.1 5.2E-10 1.1E-14 96.5 8.9 80 27-106 84-188 (915)
4 KOG0479|consensus 98.9 7.6E-09 1.6E-13 86.1 7.5 77 27-106 9-85 (818)
5 KOG0478|consensus 98.8 7.1E-09 1.5E-13 87.1 4.5 84 24-107 126-210 (804)
6 KOG0477|consensus 98.6 5.9E-08 1.3E-12 81.3 6.2 80 27-106 157-236 (854)
7 KOG0480|consensus 98.5 7.8E-07 1.7E-11 74.7 8.8 78 28-105 22-100 (764)
8 KOG0482|consensus 98.2 9.1E-06 2E-10 67.3 7.9 77 29-105 11-89 (721)
9 COG1241 MCM2 Predicted ATPase 97.8 4.4E-05 9.5E-10 64.9 6.6 71 31-106 3-73 (682)
10 PF09280 XPC-binding: XPC-bind 86.2 0.51 1.1E-05 28.2 1.6 48 51-98 9-56 (59)
11 PF01116 F_bP_aldolase: Fructo 78.7 12 0.00027 28.8 7.1 66 48-113 214-284 (287)
12 TIGR01521 FruBisAldo_II_B fruc 72.5 23 0.00049 28.3 7.2 61 52-112 258-323 (347)
13 PRK07709 fructose-bisphosphate 70.5 28 0.00061 26.9 7.2 64 50-113 214-282 (285)
14 PRK12857 fructose-1,6-bisphosp 69.1 32 0.0007 26.6 7.2 64 49-112 212-280 (284)
15 PRK09195 gatY tagatose-bisphos 69.1 32 0.0007 26.6 7.2 61 52-112 215-280 (284)
16 PRK05835 fructose-bisphosphate 68.6 31 0.00068 27.1 7.1 60 53-112 239-303 (307)
17 TIGR01858 tag_bisphos_ald clas 68.3 37 0.00079 26.3 7.4 62 51-112 212-278 (282)
18 PRK12737 gatY tagatose-bisphos 67.6 36 0.00079 26.3 7.3 62 51-112 214-280 (284)
19 PF11310 DUF3113: Protein of u 67.5 4.8 0.0001 23.8 1.8 26 69-94 23-48 (60)
20 PRK12738 kbaY tagatose-bisphos 66.7 41 0.00088 26.1 7.4 63 50-112 213-280 (286)
21 PRK13399 fructose-1,6-bisphosp 65.5 42 0.00091 26.8 7.4 61 52-112 260-325 (347)
22 TIGR01520 FruBisAldo_II_A fruc 65.0 44 0.00094 26.9 7.4 62 51-112 269-353 (357)
23 cd00947 TBP_aldolase_IIB Tagat 64.8 46 0.001 25.6 7.3 64 50-113 207-275 (276)
24 PRK08185 hypothetical protein; 64.3 45 0.00099 25.8 7.2 64 49-112 208-276 (283)
25 TIGR00167 cbbA ketose-bisphosp 64.2 44 0.00096 25.9 7.2 63 50-112 217-284 (288)
26 PRK08610 fructose-bisphosphate 63.3 51 0.0011 25.6 7.3 63 50-112 214-281 (286)
27 PRK07998 gatY putative fructos 62.8 54 0.0012 25.4 7.4 62 51-112 211-277 (283)
28 COG0191 Fba Fructose/tagatose 62.4 49 0.0011 25.8 7.0 64 49-112 214-282 (286)
29 TIGR00601 rad23 UV excision re 60.2 3.5 7.6E-05 33.2 0.5 57 36-99 248-304 (378)
30 PF14213 DUF4325: Domain of un 57.9 27 0.00059 21.1 4.1 41 50-91 5-45 (74)
31 PRK09197 fructose-bisphosphate 57.7 67 0.0015 25.8 7.3 63 50-112 260-345 (350)
32 PRK09196 fructose-1,6-bisphosp 56.4 76 0.0017 25.4 7.4 61 52-112 260-325 (347)
33 PRK07084 fructose-bisphosphate 55.2 68 0.0015 25.4 6.9 56 52-107 251-311 (321)
34 cd00946 FBP_aldolase_IIA Class 52.7 90 0.002 24.9 7.3 64 49-112 255-341 (345)
35 cd05131 RasGAP_IQGAP2 IQGAP2 i 47.6 43 0.00093 26.5 4.7 74 28-105 243-318 (339)
36 cd00453 FTBP_aldolase_II Fruct 45.0 1.4E+02 0.003 24.0 7.1 62 51-112 254-338 (340)
37 TIGR01859 fruc_bis_ald_ fructo 43.9 1.5E+02 0.0032 22.8 7.4 64 49-112 210-278 (282)
38 PRK06801 hypothetical protein; 42.9 1.5E+02 0.0033 22.9 7.0 61 52-112 216-282 (286)
39 KOG1766|consensus 39.0 24 0.00052 23.2 1.7 51 50-101 35-89 (104)
40 COG3442 Predicted glutamine am 37.1 29 0.00063 26.4 2.2 38 73-110 200-245 (250)
41 KOG2148|consensus 35.2 47 0.001 29.2 3.3 41 36-82 825-865 (867)
42 PF09197 Rap1-DNA-bind: Rap1, 35.1 71 0.0015 21.2 3.6 29 27-59 63-91 (105)
43 cd05133 RasGAP_IQGAP1 IQGAP1 i 33.9 1.2E+02 0.0026 24.4 5.3 74 28-105 243-318 (360)
44 cd05142 Barstar Barstar is an 31.8 57 0.0012 20.6 2.6 53 52-109 33-86 (87)
45 KOG0011|consensus 31.7 22 0.00047 28.4 0.8 49 52-100 225-273 (340)
46 PF03755 YicC_N: YicC-like fam 30.9 58 0.0012 22.7 2.8 57 50-106 86-149 (159)
47 PF03224 V-ATPase_H_N: V-ATPas 30.7 72 0.0016 24.4 3.5 35 74-110 225-259 (312)
48 cd05127 RasGAP_IQGAP_related T 30.0 1.1E+02 0.0024 23.6 4.5 74 28-105 237-312 (325)
49 cd05132 RasGAP_GAPA GAPA is an 29.5 1.6E+02 0.0036 23.0 5.4 73 29-105 239-313 (331)
50 PF13466 STAS_2: STAS domain 29.0 1.2E+02 0.0026 17.8 3.7 28 53-81 17-44 (80)
51 PF06414 Zeta_toxin: Zeta toxi 27.5 2.2E+02 0.0048 20.0 5.5 47 62-108 41-87 (199)
52 TIGR02671 cas_csx9 CRISPR-asso 26.3 2.3E+02 0.0051 22.4 5.6 62 27-103 13-75 (377)
53 COG4860 Uncharacterized protei 25.6 1.2E+02 0.0026 21.6 3.5 44 43-87 108-151 (170)
54 PLN03168 chalcone synthase; Pr 24.6 3.7E+02 0.0079 21.5 8.3 73 33-105 33-115 (389)
55 PRK06806 fructose-bisphosphate 24.5 3.3E+02 0.0071 20.9 7.2 64 49-112 210-277 (281)
56 PF01133 ER: Enhancer of rudim 24.4 23 0.00049 23.5 -0.2 31 50-81 35-65 (102)
57 PF07540 NOC3p: Nucleolar comp 24.4 1.3E+02 0.0028 19.4 3.4 21 79-99 10-30 (95)
58 PF08973 TM1506: Domain of unk 23.9 80 0.0017 21.8 2.4 38 53-90 2-44 (134)
59 PF09384 UTP15_C: UTP15 C term 23.8 1E+02 0.0022 21.2 3.0 65 31-102 21-87 (148)
60 cd07043 STAS_anti-anti-sigma_f 23.0 1.8E+02 0.0039 17.3 4.4 28 63-90 38-65 (99)
61 KOG0942|consensus 22.8 44 0.00096 30.2 1.2 18 68-85 771-788 (1001)
62 PF12564 TypeIII_RM_meth: Type 21.2 55 0.0012 19.3 1.0 14 76-89 1-14 (57)
63 PF13524 Glyco_trans_1_2: Glyc 20.8 2E+02 0.0044 17.1 5.5 49 53-104 31-79 (92)
64 PF04855 SNF5: SNF5 / SMARCB1 20.5 3.1E+02 0.0068 20.7 5.2 32 78-109 145-179 (244)
No 1
>KOG0481|consensus
Probab=99.81 E-value=1.4e-19 Score=146.98 Aligned_cols=102 Identities=43% Similarity=0.704 Sum_probs=91.4
Q ss_pred CCCCCCcceeecCCCCCcccccccccHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHH
Q psy5804 2 EGFDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNI 81 (113)
Q Consensus 2 ~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La 81 (113)
+|||+++|||++.++++...+ +.....++++|++|++.|+.+.. ++|+++|++++..+.++|+|++.||.+||.+|+
T Consensus 1 ~~~D~~~i~~~d~f~~d~~~d--~~~~~~v~~~fkefir~f~~~~~-f~Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~ 77 (729)
T KOG0481|consen 1 SGFDEPGIYYSDSFGGDGQAD--TGRKSQVKTKFKEFIRQFRTGTD-FKYRDQLKRNYNLGEYSLEVELEDLISFDEDLA 77 (729)
T ss_pred CCCCCCceEeecccCCCCccc--cccHHHHHHHHHHHHHHhccccc-cchHHHHHhcccccceEEEEEHHHhhccchHHH
Confidence 479999999999877655432 22678899999999999998744 899999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 82 DSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 82 ~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
+.|...|.++||+||+|+++++.+.
T Consensus 78 ~~L~~~P~~~lp~fEeAa~~Vad~i 102 (729)
T KOG0481|consen 78 DKLSKQPADHLPLFEEAAKEVADEI 102 (729)
T ss_pred HHHHhChHhHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998765
No 2
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.65 E-value=5.6e-17 Score=108.32 Aligned_cols=73 Identities=27% Similarity=0.401 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 31 ~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
++++|++||++|+. ..+|+++|.+|...+..+|.||+.||.+|+++||..|+++|.+++|+|++|+++++.+.
T Consensus 1 i~~~F~~Fl~~f~~---~~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~ 73 (121)
T PF14551_consen 1 IKRRFREFLREFKE---EPKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKEL 73 (121)
T ss_dssp --HHHHHHCCCH-T---S-CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT
T ss_pred ChHHHHHHHHcCCC---chHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999974 46899999999999999999999999999999999999999999999999999998753
No 3
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.08 E-value=5.2e-10 Score=96.47 Aligned_cols=80 Identities=18% Similarity=0.064 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHhhhcC---------------CCchhHHHHHHHHHhcC----------CcEEEEechhhhhhchhHH
Q psy5804 27 NLQSVKRKFKEFLRQFHEG---------------NFNYKYRDSLKRNYNLG----------QYFLEINIEDLTSFFINNI 81 (113)
Q Consensus 27 ~~~~~~~~Fk~Fl~~f~~~---------------~~~~~Y~e~L~~~~~~~----------~~sL~Vd~~dL~~f~~~La 81 (113)
...++.++|.+||++|.+- .....|..+|.+|+... +.+|+||+.||.+|++.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~ 163 (915)
T PTZ00111 84 RLEELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLY 163 (915)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHH
Confidence 4568999999999999542 12356999999999865 4799999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 82 DSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 82 ~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
++|+++|.++||+|++|+++++...
T Consensus 164 ~~l~~~P~e~i~~~e~~l~~~~~~~ 188 (915)
T PTZ00111 164 KLLVTFPADCIAELDKVLVKLFNEL 188 (915)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986554
No 4
>KOG0479|consensus
Probab=98.86 E-value=7.6e-09 Score=86.07 Aligned_cols=77 Identities=26% Similarity=0.287 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
...+..+.|.+||+++.+ ...|.+.++.|+..++++|.||++||+.|++++|..|+.+|.+.+|.|+.|+++++...
T Consensus 9 ~~~e~~r~f~efLd~~~D---~~iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~ 85 (818)
T KOG0479|consen 9 RFRERVRDFIEFLDDEED---ADIYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRI 85 (818)
T ss_pred HHHHHHHHHHHHhcchhh---hhHHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcc
Confidence 345666778888877754 35899999999999999999999999999999999999999999999999999998763
No 5
>KOG0478|consensus
Probab=98.77 E-value=7.1e-09 Score=87.14 Aligned_cols=84 Identities=24% Similarity=0.265 Sum_probs=74.7
Q ss_pred ccccHHHHHHHHHHHHHhhhcC-CCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804 24 IQVNLQSVKRKFKEFLRQFHEG-NFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDL 102 (113)
Q Consensus 24 ~~~~~~~~~~~Fk~Fl~~f~~~-~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei 102 (113)
.+++.++..+.|+.|+++|+.- .....|.+.|.++...+...+++|+.||..|+.+||+.+..+|+++||+|+.+++++
T Consensus 126 t~v~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~ 205 (804)
T KOG0478|consen 126 TNVNIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEI 205 (804)
T ss_pred eEEEHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHH
Confidence 4568899999999999999522 234679999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q psy5804 103 TSWRI 107 (113)
Q Consensus 103 ~~~~~ 107 (113)
+-.++
T Consensus 206 ~~e~~ 210 (804)
T KOG0478|consen 206 VLERY 210 (804)
T ss_pred HHhhc
Confidence 87665
No 6
>KOG0477|consensus
Probab=98.64 E-value=5.9e-08 Score=81.29 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
...++.++|++||++|.+.++..+|.+.|++|+..+..||+|++.||..-.+.||.+|-+.|.++|.+|+.|+.+++...
T Consensus 157 ~r~~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~ 236 (854)
T KOG0477|consen 157 VRREIARRFKNFLREYVDENGHNVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLH 236 (854)
T ss_pred hhhHHHHHHHHHHHHHhcccccchHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999988888999999999999999999999999999999999999999999999999999987654
No 7
>KOG0480|consensus
Probab=98.48 E-value=7.8e-07 Score=74.68 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhh-hchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 28 LQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTS-FFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 28 ~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~-f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
...+.+.|..|+.+|....++.+|...+..+...+..+|.||+.||.. |+++||..|.++|..++|.+..|+..++..
T Consensus 22 g~~~~e~~~~Fle~~~~~~~e~~~~~~i~~~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d 100 (764)
T KOG0480|consen 22 GERVEEEFLQFLESFKVQAGEKKYLQSIELLDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKD 100 (764)
T ss_pred ccchHHHHHHHHHHhhccccchhhHHHHHhhccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence 356788899999999986677899999999999899999999999999 999999999999999999999999998766
No 8
>KOG0482|consensus
Probab=98.16 E-value=9.1e-06 Score=67.28 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhch--hHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 29 QSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFI--NNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 29 ~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~--~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
..-+.+.+.|+.+|.+++...+|+++|.+...+++.+++||++||..|+. +|...|..|-..+..+|..|+.+++..
T Consensus 11 ~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~ 89 (721)
T KOG0482|consen 11 AADKNKIKKFLDEFYEDNELGKYMNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPE 89 (721)
T ss_pred hhhhHHHHHHHHhhhccCchhHHHHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567888999999887666689999999999999999999999999984 799999999999999999999998654
No 9
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.84 E-value=4.4e-05 Score=64.89 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 31 ~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
+.++|+ +. |..++ ...|.+++ .+......+++|++.||..|+++||..|+++|.+++|+|+.|+.++....
T Consensus 3 ~~~~~~--~~-~~~~~-~~~~~~~~-~~~~~~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~ 73 (682)
T COG1241 3 IAELFR--LR-FKWED-ILEYAENI-ILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLL 73 (682)
T ss_pred hhhhhh--hh-cccch-HHHHHHHh-hhhhccceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhc
Confidence 456677 34 65542 45677765 33333444999999999999999999999999999999999999998764
No 10
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=86.20 E-value=0.51 Score=28.19 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHH
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEIN 98 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~a 98 (113)
-..+|++++..+-..|.-=+..|..-+|.|+..|.++|++.+.++.+.
T Consensus 9 qf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~ 56 (59)
T PF09280_consen 9 QFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQNPEEFLRLLNEP 56 (59)
T ss_dssp HHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHHTHHHHHHHHHST
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHHCHHHHHHHHcCC
Confidence 445677777665555555567888999999999999999999987653
No 11
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=78.73 E-value=12 Score=28.82 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy5804 48 NYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINSK 113 (113)
Q Consensus 48 ~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~~ 113 (113)
...=.++|++.+..|-.-++|+-.=...|-..+...+.++ |..++....+++++++.+++...+|.
T Consensus 214 SG~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 214 SGLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp TTS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455678888888898889999777778888888888876 67999999999999999999888774
No 12
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=72.51 E-value=23 Score=28.34 Aligned_cols=61 Identities=8% Similarity=-0.113 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.+++++.+..+-.-++|+-.=...|-..+...+.++ |..++....+++++++.++|.-.+|
T Consensus 258 ~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs 323 (347)
T TIGR01521 258 VEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGT 323 (347)
T ss_pred HHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 689999999999999999776678888888877654 4688999999999999999887765
No 13
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=70.55 E-value=28 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhh-----HHHHHHHHHHHHHHHHHhhhhhcCC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNY-----NLGQYFLEINIEDLTSWRIFKINSK 113 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P-----~e~ip~fe~av~ei~~~~~~~~~~~ 113 (113)
.=.+++++.+..|-.-++|+-.=-..|-..+...+.++| ..++....+++++++.+.+.-.+|+
T Consensus 214 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 214 IPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred CCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345788888889999999997666788888888776554 6888899999999999998877653
No 14
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=69.11 E-value=32 Score=26.58 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.+++++.+..+-.-++|+-.=...|-..+...+.++ |..++....+++++++.+.+.-.+|
T Consensus 212 G~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK12857 212 GVPDEAIRKAISLGVRKVNIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGS 280 (284)
T ss_pred CCCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678888888999999999777788888888877654 5788999999999999999887765
No 15
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=69.07 E-value=32 Score=26.59 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.+++++.+..|-.-++|+-.=...|...+-..+.++ |..++....+++++++.+++.-.+|
T Consensus 215 ~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK09195 215 TKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGC 280 (284)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578888888899999999766678887777777654 5678999999999999999987766
No 16
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=68.63 E-value=31 Score=27.06 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 53 DSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 53 e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
+++++.+..+-.-++|+-+=...|-..+...+.++ |..++....+++++++.+++.-.+|
T Consensus 239 e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 303 (307)
T PRK05835 239 EFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGS 303 (307)
T ss_pred HHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999777778888888777654 5788999999999999999886665
No 17
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=68.31 E-value=37 Score=26.27 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
=.+++++.+..|-.-++|+-.=...|-..+...+.+ +|..++....+++++++.+.+.-.+|
T Consensus 212 ~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 278 (282)
T TIGR01858 212 PDEDVRRTIELGICKVNVATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGS 278 (282)
T ss_pred CHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 357888888889999999876667888778777765 35678899999999999999887776
No 18
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=67.62 E-value=36 Score=26.29 Aligned_cols=62 Identities=13% Similarity=0.006 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
=.+++++.+..|-..++|+-.=-..|-..+...+.++ |..++....+++++++.+++.-.+|
T Consensus 214 ~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (284)
T PRK12737 214 PDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGS 280 (284)
T ss_pred CHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4577888888898899998665567777777777654 5678999999999999999887765
No 19
>PF11310 DUF3113: Protein of unknown function (DUF3113); InterPro: IPR021461 This entry is represented by Bacteriophage 92, Orf93. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=67.46 E-value=4.8 Score=23.85 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=19.3
Q ss_pred echhhhhhchhHHHHHHHhhHHHHHH
Q psy5804 69 NIEDLTSFFINNIDSLKRNYNLGQYF 94 (113)
Q Consensus 69 d~~dL~~f~~~La~~L~~~P~e~ip~ 94 (113)
.+.++..--..||+.|-++|.++|..
T Consensus 23 ~~~~vD~eKe~LAdyLy~NP~eiLeY 48 (60)
T PF11310_consen 23 HFDDVDKEKEALADYLYNNPDEILEY 48 (60)
T ss_pred chhhhhhHHHHHHHHHhcCHHHHhhc
Confidence 34444444557999999999999864
No 20
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=66.66 E-value=41 Score=26.09 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.+++++.+..|-.-++|+-.=-..|-..+...+.+ +|..++....+++++++.++|.-.+|
T Consensus 213 ~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 280 (286)
T PRK12738 213 VPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGS 280 (286)
T ss_pred CCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888888889999999976667888888877765 45788999999999999999887665
No 21
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=65.47 E-value=42 Score=26.82 Aligned_cols=61 Identities=10% Similarity=-0.007 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.++|++.+..+-.-++|+-+=...|-..+-..+.+ .|..+++...+++++++.+++.-..|
T Consensus 260 ~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs 325 (347)
T PRK13399 260 VEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGT 325 (347)
T ss_pred HHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58899999999999999977777888888777764 46788999999999999998876654
No 22
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=65.03 E-value=44 Score=26.90 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHhh
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----------------------NYNLGQYFLEINIEDLTSWRI 107 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----------------------~P~e~ip~fe~av~ei~~~~~ 107 (113)
=.++|++.+..+-.-++|+-+=-..|-..+...+.+ +|..++....+++++++.+.|
T Consensus 269 ~~e~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~a~k~~v~~~i 348 (357)
T TIGR01520 269 TKQEIKEALSYGVVKMNIDTDTQWAYWEGILNYYKNNEDYLQGQLGNPKGPDKPNKKFYDPRVWLREGEKSMKARVEKAC 348 (357)
T ss_pred CHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHhccccccCccCCcccccCCCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 347788888889999999976667777777777753 467889999999999999999
Q ss_pred hhhcC
Q psy5804 108 FKINS 112 (113)
Q Consensus 108 ~~~~~ 112 (113)
.-.+|
T Consensus 349 ~~~gs 353 (357)
T TIGR01520 349 QELNN 353 (357)
T ss_pred HHhCC
Confidence 88776
No 23
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=64.81 E-value=46 Score=25.63 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINSK 113 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~~ 113 (113)
.=.+++++.+..|-.-++|+-.=...|-..+.+.+.+ +|..++....+++++.+.+.+.-.+|+
T Consensus 207 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s~ 275 (276)
T cd00947 207 IPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGSA 275 (276)
T ss_pred CCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3446788888889888999877667787788887765 467889999999999999988877663
No 24
>PRK08185 hypothetical protein; Provisional
Probab=64.25 E-value=45 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.+++++.+..|-.-++|+-+=...|-..+...+.++ |..++....+++++++.+++.-.+|
T Consensus 208 g~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs 276 (283)
T PRK08185 208 ANPDAEIAESVQLGVGKINISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNS 276 (283)
T ss_pred CCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344688999999999999999776678888888777654 5688889999999999998887665
No 25
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=64.15 E-value=44 Score=25.85 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.+++++.+..|-.-++|+-.=...|-..+...+.+ +|..++....+++++++.+.+.-.+|
T Consensus 217 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 284 (288)
T TIGR00167 217 IPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGS 284 (288)
T ss_pred CCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3446788888889989999877667777777777764 46788999999999999999887765
No 26
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=63.30 E-value=51 Score=25.57 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.+++++.+..|-.-++|+-.=-..|-..+...+.+ +|..++....+++++++.+.+.-.+|
T Consensus 214 ~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs 281 (286)
T PRK08610 214 IPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGT 281 (286)
T ss_pred CCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3457788888889989999866666777778777754 46788999999999999998877665
No 27
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=62.78 E-value=54 Score=25.40 Aligned_cols=62 Identities=15% Similarity=-0.005 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
=.+++++.+..|-.-++|+-.=...|-..+...|.++ |..++....+++++++.++|.-.+|
T Consensus 211 ~~e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 277 (283)
T PRK07998 211 PPEILRSFVNYKVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNS 277 (283)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3467788888888889998666678888888777653 5678899999999999999887765
No 28
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=62.36 E-value=49 Score=25.81 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.++|++-+..+..-++||-+--..|-..+-..+.++ |..+|....+|+++.+..++.-.||
T Consensus 214 Gip~~eI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs 282 (286)
T COG0191 214 GIPDEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGS 282 (286)
T ss_pred CCCHHHHHHHHHhCceEEeeCcHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345678889999999999999776677777777777766 6788999999999999999988876
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.22 E-value=3.5 Score=33.18 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=44.3
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHH
Q psy5804 36 KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINI 99 (113)
Q Consensus 36 k~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av 99 (113)
.+||++- .-..+||++++.+-..|.-=+..|.+-+|.|+..|.++|.++|.++.+.+
T Consensus 248 l~~Lr~~-------pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~q~I~~n~e~Fl~ll~~~~ 304 (378)
T TIGR00601 248 LEFLRNQ-------PQFQQLRQVVQQNPQLLPPLLQQIGQENPQLLQQISQHPEQFLQMLNEPV 304 (378)
T ss_pred HHHhhcC-------HHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHhcCcc
Confidence 3676652 23457777777766666666889999999999999999999999997664
No 30
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=57.86 E-value=27 Score=21.07 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHH
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLG 91 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ 91 (113)
..++.|...+..++. ++||++.+..+.+.+++...-....-
T Consensus 5 ~~~~~i~~~l~~~~~-V~lDF~gv~~~~ssFl~eafg~l~~~ 45 (74)
T PF14213_consen 5 RLRDEIEPALKEGEK-VVLDFEGVESITSSFLNEAFGQLVRE 45 (74)
T ss_pred HHHHHHHHHHhcCCe-EEEECCCcccccHHHHHHHHHHHHHH
Confidence 344557777776655 99999999988877666655544333
No 31
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=57.66 E-value=67 Score=25.76 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHh
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----------------------NYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----------------------~P~e~ip~fe~av~ei~~~~ 106 (113)
.=.+++++.+..+-.-++|+-.=-..|-..+-..+.+ +|..++....+++++++.++
T Consensus 260 ipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~ 339 (350)
T PRK09197 260 STLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFKNYDYLQGQVGNPEGEDKPNKKYYDPRVWLRAAEASMAARLEEA 339 (350)
T ss_pred CCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHhhhhhhhhccCCCcccCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999999966666777777666654 36788999999999999999
Q ss_pred hhhhcC
Q psy5804 107 IFKINS 112 (113)
Q Consensus 107 ~~~~~~ 112 (113)
+.-.+|
T Consensus 340 i~~~gs 345 (350)
T PRK09197 340 FEDLNS 345 (350)
T ss_pred HHHhCC
Confidence 887766
No 32
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.36 E-value=76 Score=25.38 Aligned_cols=61 Identities=7% Similarity=-0.083 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.+++++.+..+-.-++|+-+=...|-..+-..+.+ +|..++....+++++++.++|.-..|
T Consensus 260 ~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs 325 (347)
T PRK09196 260 VEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGT 325 (347)
T ss_pred HHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 37899999999999999976667787777777764 45788889999999999998876654
No 33
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=55.19 E-value=68 Score=25.38 Aligned_cols=56 Identities=7% Similarity=0.008 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhh
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRI 107 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~ 107 (113)
.++|++.+..+-.-++|+-+=-..|-..+-..|.+ +|..++....+++++++.++|
T Consensus 251 ~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~av~~~v~~~i 311 (321)
T PRK07084 251 EEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVFDEKPEEFDPRKYLGPARDELKKLYKHKI 311 (321)
T ss_pred HHHHHHHHHcCCceeccchHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999976556777778777754 467889999999999999988
No 34
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=52.73 E-value=90 Score=24.94 Aligned_cols=64 Identities=8% Similarity=0.031 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHH
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----------------------NYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----------------------~P~e~ip~fe~av~ei~~~ 105 (113)
..=.+++++.+..|-.-++|+-.=-..|-..+...+.+ +|..++....+++++++.+
T Consensus 255 G~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~ 334 (345)
T cd00946 255 GSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLKNEDYLQGQIGNPEGPDKPNKKYYDPRVWLREGEKSMVARVKK 334 (345)
T ss_pred CCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhhcchhhccccCCCcccCCCCccccCHHHHHHHHHHHHHHHHHH
Confidence 34557888888899999999976667777777777754 3568899999999999999
Q ss_pred hhhhhcC
Q psy5804 106 RIFKINS 112 (113)
Q Consensus 106 ~~~~~~~ 112 (113)
.+.-.+|
T Consensus 335 ~i~~~gs 341 (345)
T cd00946 335 AFEDLNS 341 (345)
T ss_pred HHHHhCC
Confidence 9887776
No 35
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=47.65 E-value=43 Score=26.48 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 28 LQSVKRKFKEFLRQFHEGNF--NYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 28 ~~~~~~~Fk~Fl~~f~~~~~--~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
..+...++++||.+-.+-.. ...-.+...++....+..|+|..++|.+ +...|.++=..+-|--++-+.++++.
T Consensus 243 i~~~~~~~~~fl~~l~~V~d~e~~~~~d~Y~dl~~~~kP~l~I~~~ei~~----ih~ll~~~~~~i~p~~~D~L~~il~~ 318 (339)
T cd05131 243 LSQTYQKFRKFFQAACDVPEPEEKFNVDEYSDLVTLSKPVIYISIEEIIN----THSLLLEHQDAIAPDQNDLLHELLKD 318 (339)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHcChhHHHHHHhccCCeEEeeHHHHHH----HHHHHHHHHHHhCCCCCChHHHHHHH
Confidence 34567788899887654211 1223345667777778899999999995 44444444444445555666666654
No 36
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=45.04 E-value=1.4e+02 Score=23.97 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHhh
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----------------------NYNLGQYFLEINIEDLTSWRI 107 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----------------------~P~e~ip~fe~av~ei~~~~~ 107 (113)
=.+++++.+..+-.-++|+-.=-..|-..+...+.+ +|..++....+++++.+.+.+
T Consensus 254 ~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~~~~~v~~~i 333 (340)
T cd00453 254 TAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAF 333 (340)
T ss_pred CHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHhChhhhhhhccCcccccCCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888889888999877666777777776654 357889999999999999998
Q ss_pred hhhcC
Q psy5804 108 FKINS 112 (113)
Q Consensus 108 ~~~~~ 112 (113)
.-.||
T Consensus 334 ~~~~~ 338 (340)
T cd00453 334 QELNA 338 (340)
T ss_pred HHhCC
Confidence 87776
No 37
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=43.91 E-value=1.5e+02 Score=22.79 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.+++++.+..|-..++|+-.=...|...+...+.+ .|..++....+++++++.+.+.-.+|
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs 278 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGS 278 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566788888888889999877667888888877754 46788999999999999998877665
No 38
>PRK06801 hypothetical protein; Provisional
Probab=42.92 E-value=1.5e+02 Score=22.89 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhh------HHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNY------NLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P------~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.+++++.+..|-.-++|+-.=...|-..+...|.++| ..++....+++++.+.+++.-.+|
T Consensus 216 ~e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs 282 (286)
T PRK06801 216 DADFRRAIELGIHKINFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGS 282 (286)
T ss_pred HHHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4677778888888888886666778888877776654 466788888999999998887765
No 39
>KOG1766|consensus
Probab=38.96 E-value=24 Score=23.22 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHH---HHH-hhHHHHHHHHHHHHH
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDS---LKR-NYNLGQYFLEINIED 101 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~---L~~-~P~e~ip~fe~av~e 101 (113)
.|.+.|+++.+ ....+.-|+.+|..|=.+|++. +-+ .-..++|.=.+=|++
T Consensus 35 ~yEe~Lkk~nP-s~~~ITYDIsqlfeFiD~L~DlS~lVy~~~t~tY~pynk~wIKe 89 (104)
T KOG1766|consen 35 MYEEHLKKKNP-SAPPITYDISQLFEFIDDLADLSMLVYNRETGTYIPYNKDWIKE 89 (104)
T ss_pred HHHHHHHhcCC-CCCCcceeHHHHHHHHHHHhhhhhhheecccccccCccHHHHHH
Confidence 46666666655 4677899999999998777763 222 255566655554444
No 40
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=37.14 E-value=29 Score=26.39 Aligned_cols=38 Identities=16% Similarity=-0.114 Sum_probs=28.5
Q ss_pred hhhhchhHHHHHHHhhHH-------HHHHHHHHHHHHHH-Hhhhhh
Q psy5804 73 LTSFFINNIDSLKRNYNL-------GQYFLEINIEDLTS-WRIFKI 110 (113)
Q Consensus 73 L~~f~~~La~~L~~~P~e-------~ip~fe~av~ei~~-~~~~~~ 110 (113)
+.+-+|+||++|+..-.+ -+|.+++.+.+.++ +.+.+.
T Consensus 200 ~L~rNp~LAd~Ll~tAl~~ky~~~i~L~~ldd~l~~~~r~e~l~~~ 245 (250)
T COG3442 200 ILSRNPELADRLLTTALEKKYGQEIELPPLDDILADQARRERLADR 245 (250)
T ss_pred cccCCHHHHHHHHHHHHHHhhCCcccCCccccHHHHHHHHHHHHhh
Confidence 456689999999998887 77888887777665 555443
No 41
>KOG2148|consensus
Probab=35.17 E-value=47 Score=29.23 Aligned_cols=41 Identities=24% Similarity=0.503 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHH
Q psy5804 36 KEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNID 82 (113)
Q Consensus 36 k~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~ 82 (113)
++|++.|. .|.+.|...++.....++++++||.+|-.++|.
T Consensus 825 eeFi~qy~------~f~~lIakcYpgs~v~le~~iq~iLaffS~IAq 865 (867)
T KOG2148|consen 825 EEFIDQYE------SFEQLIAKCYPGSNVPLEFEIQDILAFFSEIAQ 865 (867)
T ss_pred HHHHHHHH------HHHHHHHHhcCCCCCceeeeHHHHHHHHHHHhh
Confidence 56777764 366677788887788999999999999888775
No 42
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=35.13 E-value=71 Score=21.22 Aligned_cols=29 Identities=10% Similarity=0.282 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q psy5804 27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY 59 (113)
Q Consensus 27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~ 59 (113)
+....+.+|+.|+..| +...|.+.-....
T Consensus 63 T~~sWRDR~RKfv~~~----gi~~Yi~Yye~~~ 91 (105)
T PF09197_consen 63 TENSWRDRYRKFVSEY----GIQSYIEYYEKCR 91 (105)
T ss_dssp -HHHHHHHHHHTHHHH-----HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHc----ChHHHHHHHHHHH
Confidence 4567788888888887 3445655544333
No 43
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=33.91 E-value=1.2e+02 Score=24.36 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 28 LQSVKRKFKEFLRQFHEGNF--NYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 28 ~~~~~~~Fk~Fl~~f~~~~~--~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
......++++||.+-.+-.. ...=.++..++....+..|+|.+++|.. +...|.++=..+-|--++-+.++++.
T Consensus 243 I~~~~~~~~~fl~~~~~V~d~ee~~~~dey~dl~~~~kP~l~Is~~eI~~----~H~Ll~~~~d~iap~~~D~L~~il~~ 318 (360)
T cd05133 243 LSQSYQKFRRFFQSACEVPELQDKFNVDEYSDLVTLTKPVIYISIGEIIN----THTLLLDHQDAIAPEHNDPIHELLDD 318 (360)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHhcChhHHHHHHhccCCeEEeeHHHHHH----HHHHHHHhHHhhCCCCCChHHHHHHH
Confidence 45567788999887543211 1122334556666678899999999995 44445555444445555555555543
No 44
>cd05142 Barstar Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=31.76 E-value=57 Score=20.61 Aligned_cols=53 Identities=13% Similarity=-0.049 Sum_probs=34.9
Q ss_pred HHHHHHHHhcC-CcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhh
Q psy5804 52 RDSLKRNYNLG-QYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFK 109 (113)
Q Consensus 52 ~e~L~~~~~~~-~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~~~~ 109 (113)
.+.|-+.+..+ ...++|.+.+... ....|-..+..++.+|++|.++. .+..|+
T Consensus 33 lDAl~D~Ltg~~~~p~~I~~~~~~~----~~~~L~~~~~~l~~v~~da~~e~-~~~~f~ 86 (87)
T cd05142 33 LDALWDCLTGWVELPLTIEWKNFEQ----SKQRLGNYAESLLQVFAEAEEEG-GDLKFN 86 (87)
T ss_pred HHHHHHHHcCCCCCCeEEEEeccHH----HHHHhhHHHHHHHHHHHHHHHhc-cCeeee
Confidence 44555555432 2467788877764 44455667889999999999987 554443
No 45
>KOG0011|consensus
Probab=31.65 E-value=22 Score=28.37 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHH
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIE 100 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ 100 (113)
..+|++|++.+..-|.==+..|-.-+|.|...|.+||..+|..+.+.+.
T Consensus 225 f~~lR~~iqqNP~ll~~~Lqqlg~~nP~L~q~Iq~nqe~Fl~mlnep~~ 273 (340)
T KOG0011|consen 225 FQQLRQMIQQNPELLHPLLQQLGKQNPQLLQLIQENQEAFLQLLNEPVE 273 (340)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHhhcccc
Confidence 3567777776655555556778888999999999999999999987654
No 46
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=30.92 E-value=58 Score=22.66 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHH-HH-H-HHh----hHHHHHHHHHHHHHHHHHh
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNI-DS-L-KRN----YNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La-~~-L-~~~----P~e~ip~fe~av~ei~~~~ 106 (113)
.|.+.|+++...-...-.+++.+|..++.-+. .. - .+. -..+.+++++|+.++..-+
T Consensus 86 ~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~mR 149 (159)
T PF03755_consen 86 AYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIAMR 149 (159)
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788877666544455788999999987665 22 1 111 2336666777776665443
No 47
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.70 E-value=72 Score=24.39 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred hhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Q psy5804 74 TSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIFKI 110 (113)
Q Consensus 74 ~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~~~~~ 110 (113)
.+|+++.+..+.... ++|.+-+.++....+++-++
T Consensus 225 LSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv 259 (312)
T PF03224_consen 225 LSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRV 259 (312)
T ss_dssp HTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHH
T ss_pred HhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHH
Confidence 489999999998888 99999999998887776543
No 48
>cd05127 RasGAP_IQGAP_related This family represents IQ motif containing GTPase activating protein (IQGAP) which associated with the Ras GTP-binding protein. A primary function of IQGAP proteins is to modulate cytoskeletal architecture. There are three known IQGAP family members: IQGAP1, IQGAP2 and IQGAP3. Human IQGAP1 and IQGAP2 share 62% indentity. IQGAPs are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP is an essential regulator of cytoskeletal function. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity, the protein actually lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite of their similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGA
Probab=30.02 E-value=1.1e+02 Score=23.64 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 28 LQSVKRKFKEFLRQFHEGNF--NYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 28 ~~~~~~~Fk~Fl~~f~~~~~--~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
..+...++++||.+--+-.. .....+...++....+..++|..++|.. +...|.++=..+.|-.++-+.+++..
T Consensus 237 i~~~~~~~~~fl~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~i~~~ei~~----ih~ll~~~~~~~~p~~~d~l~~i~~~ 312 (325)
T cd05127 237 ISESKPRFRDFLKELIDVPDPEEEFEIDEYYDLVSKTKPVLYISVNEIIN----THSLLLEHIDEIAPDKDDPLRELLKE 312 (325)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhcCchhHHHHHhCCCCeEEeeHHHHHH----HHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 34567778888887653311 1122334556667778999999999994 45555555455555555555555443
No 49
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=29.52 E-value=1.6e+02 Score=22.96 Aligned_cols=73 Identities=12% Similarity=-0.005 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhcCCC--chhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 29 QSVKRKFKEFLRQFHEGNF--NYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 29 ~~~~~~Fk~Fl~~f~~~~~--~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
.+...++++||.+-.+-.+ ...-.+...++....+..|+|..++|..-- ..|.++=..+-|--++-+.++++.
T Consensus 239 ~~~~~~~~~fl~~l~~v~~~e~~~~~d~y~dl~~~~~p~l~I~~~ei~~~h----~ll~~~~~~~~~~~~D~L~~il~~ 313 (331)
T cd05132 239 DENKEKVNNFLEELTEVGDPEEYLQVDKYMALSKKVDPTILITLNEIYNTH----SLILKHLLDLAPDKEDPLRIILDE 313 (331)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHhcCHhHHHHHHhccCCeEEeeHHHHHHHH----HHHHHHHHHhCCCCCCcHHHHHHH
Confidence 4456677888877553211 112234556677777899999999999544 344444344444445555555443
No 50
>PF13466 STAS_2: STAS domain
Probab=28.97 E-value=1.2e+02 Score=17.81 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCcEEEEechhhhhhchhHH
Q psy5804 53 DSLKRNYNLGQYFLEINIEDLTSFFINNI 81 (113)
Q Consensus 53 e~L~~~~~~~~~sL~Vd~~dL~~f~~~La 81 (113)
+.+.+.+..+ ..++||+.++...|..-.
T Consensus 17 ~~l~~~~~~~-~~v~lDls~v~~iDsagl 44 (80)
T PF13466_consen 17 QALQALLASG-RPVVLDLSGVEFIDSAGL 44 (80)
T ss_pred HHHHHHHcCC-CeEEEECCCCCeecHHHH
Confidence 3444455445 789999999998886433
No 51
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=27.45 E-value=2.2e+02 Score=19.97 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Q psy5804 62 GQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWRIF 108 (113)
Q Consensus 62 ~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~~~ 108 (113)
....+.||-++++.+-|.........|.+.-+.....+..++...+.
T Consensus 41 ~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 41 GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 35578999999999988777766667777777666666666655544
No 52
>TIGR02671 cas_csx9 CRISPR-associated protein (provisional), Csx9 family. Members of this family, so far, are archaeal proteins found in CRISPR-associated (cas) gene regions. So far, this rare cas protein is found in only three genomes: Pyrococcus horikoshii shinkaj OT3, Pyrococcus abyssi GE5, and Thermococcus kodakarensis KOD1. In each case it is found immediately upstream of cas3 in loci that resemble the Apern type but lack Csa1 and Csa4 genes.
Probab=26.34 E-value=2.3e+02 Score=22.39 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-hHHHHHHHHHHHHHHH
Q psy5804 27 NLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-YNLGQYFLEINIEDLT 103 (113)
Q Consensus 27 ~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-P~e~ip~fe~av~ei~ 103 (113)
+..++.+.|+.-+.++++. ++ +. +=.+.-+|=.+|+.-+..|.-.+ |.++..+|+.+|.+.+
T Consensus 13 d~~~lad~~e~~~dslk~r---------~~--~~----tSkigrNDr~S~~~v~~~WF~~~~PetY~eLfelvi~eTI 75 (377)
T TIGR02671 13 DPEELADALEGALDSLKSR---------AM--IN----TSKIGRNDRNSFDRVLSAWFGRSAPETYGELFELVINETI 75 (377)
T ss_pred ChHHHHHHHHHHHHHHHHH---------Hh--cc----cccccccchhhHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 5677888888888877532 11 11 12234456778998888888655 9999999999998854
No 53
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=1.2e+02 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=31.9
Q ss_pred hcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh
Q psy5804 43 HEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN 87 (113)
Q Consensus 43 ~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~ 87 (113)
..++....|.+.|..++..+..++. |+.+=..-+|-|-..+...
T Consensus 108 ~sdeev~ey~~ei~~l~e~g~ts~~-~vt~~Ln~~p~~iraiakR 151 (170)
T COG4860 108 LSDEEVKEYEDEIKALMEEGNTSFL-DVTDTLNISPTLIRAIAKR 151 (170)
T ss_pred CCHHHHHHHHHHHHHHHHcCCceEe-ehhhhcCCChHHHHHHHHH
Confidence 3333456799999999999888877 7777666777666665544
No 54
>PLN03168 chalcone synthase; Provisional
Probab=24.55 E-value=3.7e+02 Score=21.47 Aligned_cols=73 Identities=7% Similarity=-0.062 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhcCCCchhHHHHHHHHHh---cCCcEEEEechhhhhhc-------hhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804 33 RKFKEFLRQFHEGNFNYKYRDSLKRNYN---LGQYFLEINIEDLTSFF-------INNIDSLKRNYNLGQYFLEINIEDL 102 (113)
Q Consensus 33 ~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~---~~~~sL~Vd~~dL~~f~-------~~La~~L~~~P~e~ip~fe~av~ei 102 (113)
+.+.+|+.+..........++++++++. -.++.+.++...+..+. |.+..+..-+-.+...+..+|++..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~~~~~~~a~~La~~Aa~~A 112 (389)
T PLN03168 33 SEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRHDIVVVQVPKLAAEAAQKA 112 (389)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566554321111223444665554 35777777554444332 3566666666777777777777666
Q ss_pred HHH
Q psy5804 103 TSW 105 (113)
Q Consensus 103 ~~~ 105 (113)
+.+
T Consensus 113 L~~ 115 (389)
T PLN03168 113 IKE 115 (389)
T ss_pred HHH
Confidence 543
No 55
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=24.50 E-value=3.3e+02 Score=20.90 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH----hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR----NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~----~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.+++++....|-..+.|.-.=...+-..+...+.+ .|..++....+++++++.+++.-.+|
T Consensus 210 GI~~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs 277 (281)
T PRK06806 210 GISPEDFKKCIQHGIRKINVATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGS 277 (281)
T ss_pred CCCHHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567888888888888888754444555555555554 35678888888999999998877665
No 56
>PF01133 ER: Enhancer of rudimentary; InterPro: IPR000781 The Drosophila protein 'enhancer of rudimentary' (gene (e(r)) is a small protein of 104 residues whose function is not yet clear. From an evolutionary point of view, it is highly conserved [] and has been found to exist in probably all multicellular eukaryotic organisms. It has been proposed that this protein plays a role in the cell cycle.; GO: 0007049 cell cycle; PDB: 1W9G_A 2NML_A 1WWQ_A 1WZ7_B.
Probab=24.41 E-value=23 Score=23.51 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHH
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNI 81 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La 81 (113)
.|.+.|+++.+ ...+++-|+.+|..|=..|+
T Consensus 35 ~YE~~LK~~nP-~~~~ItYdIs~Lf~fID~l~ 65 (102)
T PF01133_consen 35 IYEEHLKRKNP-NSPSITYDISDLFDFIDSLA 65 (102)
T ss_dssp HHHHHHHHHST-T-SS----HHHHHHHHHHSS
T ss_pred HHHHHHHHcCC-CCCcccccHHHHHHHHhhhh
Confidence 46677776654 46788888888887755544
No 57
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=24.39 E-value=1.3e+02 Score=19.44 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=17.8
Q ss_pred hHHHHHHHhhHHHHHHHHHHH
Q psy5804 79 NNIDSLKRNYNLGQYFLEINI 99 (113)
Q Consensus 79 ~La~~L~~~P~e~ip~fe~av 99 (113)
.|+..|+++|++-+..+...+
T Consensus 10 ~l~~~ile~PE~ni~~lk~l~ 30 (95)
T PF07540_consen 10 SLASSILEDPEENIGSLKRLL 30 (95)
T ss_pred HHHHHHHHCHHHHHHHHHHHH
Confidence 689999999999998877644
No 58
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=23.89 E-value=80 Score=21.79 Aligned_cols=38 Identities=8% Similarity=-0.031 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcEEEEechh-hhhhch----hHHHHHHHhhHH
Q psy5804 53 DSLKRNYNLGQYFLEINIED-LTSFFI----NNIDSLKRNYNL 90 (113)
Q Consensus 53 e~L~~~~~~~~~sL~Vd~~d-L~~f~~----~La~~L~~~P~e 90 (113)
+++.+++..+.+|++|-=++ ++.++. .|++.|.++|..
T Consensus 2 ~~~~~~L~e~~~S~Vv~~~~~i~t~~~rGv~pL~~ll~~~~~~ 44 (134)
T PF08973_consen 2 EEAIKLLHEENYSCVVLKDGEIRTSDGRGVKPLYDLLNEEPEF 44 (134)
T ss_dssp -HHHHHHHHTT-SEEEESSSEEEEE--STTHHHHHHHHH-S--
T ss_pred HHHHHHHHhCCceEEEEeCCEEEEeCCCChHHHHHHHHhChhh
Confidence 56777888889999887766 777764 799999888874
No 59
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=23.82 E-value=1e+02 Score=21.21 Aligned_cols=65 Identities=14% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHHHH-hcCCcEEEEechhhhhhchhHHHHHHHh-hHHHHHHHHHHHHHH
Q psy5804 31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNY-NLGQYFLEINIEDLTSFFINNIDSLKRN-YNLGQYFLEINIEDL 102 (113)
Q Consensus 31 ~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~-~~~~~sL~Vd~~dL~~f~~~La~~L~~~-P~e~ip~fe~av~ei 102 (113)
--..|...|+.|+ |.+.|...+ ......++|.+=.=......|...|... ..++.|++.-.++.+
T Consensus 21 kl~~~D~~Lr~F~-------y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i 87 (148)
T PF09384_consen 21 KLSKYDKLLRKFR-------YKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNI 87 (148)
T ss_pred cchHHHHHHHcCC-------HHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3455777788875 888888777 4444455555433333344666666665 555666665555444
No 60
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=22.96 E-value=1.8e+02 Score=17.28 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=20.7
Q ss_pred CcEEEEechhhhhhchhHHHHHHHhhHH
Q psy5804 63 QYFLEINIEDLTSFFINNIDSLKRNYNL 90 (113)
Q Consensus 63 ~~sL~Vd~~dL~~f~~~La~~L~~~P~e 90 (113)
...+.+|+.++...|..-+..|..--.+
T Consensus 38 ~~~viid~~~v~~iDs~g~~~L~~l~~~ 65 (99)
T cd07043 38 PRRLVLDLSGVTFIDSSGLGVLLGAYKR 65 (99)
T ss_pred CCEEEEECCCCCEEcchhHHHHHHHHHH
Confidence 4789999999999988666666554433
No 61
>KOG0942|consensus
Probab=22.85 E-value=44 Score=30.19 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=16.7
Q ss_pred EechhhhhhchhHHHHHH
Q psy5804 68 INIEDLTSFFINNIDSLK 85 (113)
Q Consensus 68 Vd~~dL~~f~~~La~~L~ 85 (113)
||++||.++||+||.-|+
T Consensus 771 vd~~dL~SlDPeLY~nLi 788 (1001)
T KOG0942|consen 771 VDLHDLASLDPELYKNLI 788 (1001)
T ss_pred CChhhhcccCHHHHHHHH
Confidence 999999999999998775
No 62
>PF12564 TypeIII_RM_meth: Type III restriction/modification enzyme methylation subunit; InterPro: IPR022221 This domain family is found in bacteria, and is approximately 60 amino acids in length. It is found in association with PF01555 from PFAM. There are two completely conserved residues (F and S) that may be functionally important. It is found in bacterial phage resistance proteins, in particular in the methylation subunit of the type III restriction/modification enzyme complex [].
Probab=21.24 E-value=55 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=10.7
Q ss_pred hchhHHHHHHHhhH
Q psy5804 76 FFINNIDSLKRNYN 89 (113)
Q Consensus 76 f~~~La~~L~~~P~ 89 (113)
||++|-..|+++|.
T Consensus 1 yD~~Li~~LL~~~~ 14 (57)
T PF12564_consen 1 YDEELIKALLSNEL 14 (57)
T ss_pred CCHHHHHHHHcCHH
Confidence 46778888888876
No 63
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=20.77 E-value=2e+02 Score=17.12 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5804 53 DSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTS 104 (113)
Q Consensus 53 e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~ 104 (113)
..+...+..+...+.++ +...+. +....++++|.+.-.+.+.|...+..
T Consensus 31 ~~~~~~~~~~~~~~~~~--~~~el~-~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 31 PGLREIFEDGEHIITYN--DPEELA-EKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred HHHHHHcCCCCeEEEEC--CHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 34444555555556654 333333 45556777999998888888777653
No 64
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=20.54 E-value=3.1e+02 Score=20.68 Aligned_cols=32 Identities=6% Similarity=-0.285 Sum_probs=27.4
Q ss_pred hhHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhh
Q psy5804 78 INNIDSLKRN---YNLGQYFLEINIEDLTSWRIFK 109 (113)
Q Consensus 78 ~~La~~L~~~---P~e~ip~fe~av~ei~~~~~~~ 109 (113)
.++|..++.. |.|..|+...||+|.+.+.-|.
T Consensus 145 E~FA~~~c~dLgL~~Ef~~aIahsIrEq~~~~kK~ 179 (244)
T PF04855_consen 145 EEFARVLCADLGLPGEFVPAIAHSIREQLLKYKKE 179 (244)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4789888888 9999999999999988886543
Done!