Query psy5804
Match_columns 113
No_of_seqs 111 out of 509
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 18:24:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vl6_A SSO MCM N-TER, minichro 99.6 5.6E-16 1.9E-20 116.1 6.5 77 30-106 9-85 (268)
2 3f9v_A Minichromosome maintena 99.5 2.2E-14 7.5E-19 117.6 6.3 76 30-105 3-78 (595)
3 1ltl_A DNA replication initiat 99.5 5.1E-14 1.8E-18 106.2 6.8 70 26-102 9-80 (279)
4 2f4m_B UV excision repair prot 84.7 0.4 1.4E-05 28.0 1.5 47 51-97 12-58 (61)
5 1pve_A HHR23B, UV excision rep 83.7 0.27 9.2E-06 29.7 0.4 45 53-97 16-60 (72)
6 1rvg_A Fructose-1,6-bisphospha 77.5 8.7 0.0003 29.0 7.0 64 49-112 233-301 (305)
7 1gvf_A Tagatose-bisphosphate a 77.1 9.6 0.00033 28.4 7.1 64 49-112 212-280 (286)
8 3n9r_A Fructose-bisphosphate a 74.0 13 0.00043 28.1 7.1 63 50-112 236-303 (307)
9 2isw_A Putative fructose-1,6-b 72.0 14 0.00049 28.0 7.0 63 50-112 236-303 (323)
10 3qm3_A Fructose-bisphosphate a 71.4 16 0.00053 28.2 7.2 63 50-112 268-353 (357)
11 1oqy_A HHR23A, UV excision rep 69.9 2.1 7.4E-05 33.1 2.1 54 37-97 238-291 (368)
12 3q94_A Fructose-bisphosphate a 69.1 19 0.00063 26.9 7.0 63 50-112 217-284 (288)
13 3elf_A Fructose-bisphosphate a 67.7 21 0.00072 27.4 7.2 64 49-112 256-337 (349)
14 1dos_A Aldolase class II; lyas 66.3 23 0.00079 27.2 7.2 64 49-112 268-354 (358)
15 2qsf_X RAD23, UV excision repa 62.4 3.4 0.00012 28.7 1.7 48 51-98 34-81 (171)
16 3pm6_A Putative fructose-bisph 59.5 23 0.00077 26.7 5.9 62 51-112 233-295 (306)
17 1w53_A Phosphoserine phosphata 36.6 72 0.0025 19.4 6.0 25 78-102 31-58 (84)
18 2kl8_A OR15; structural genomi 34.7 29 0.001 20.5 2.4 17 92-108 12-28 (85)
19 3kdq_A Uncharacterized conserv 24.3 58 0.002 21.9 2.8 26 85-111 40-65 (154)
20 4ffe_X CPXV018 protein; viral 23.7 39 0.0013 22.2 1.8 35 4-43 34-68 (151)
21 2rre_A NVL2, putative uncharac 20.2 60 0.002 19.6 2.0 58 52-112 18-76 (78)
No 1
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=99.62 E-value=5.6e-16 Score=116.10 Aligned_cols=77 Identities=23% Similarity=0.187 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q psy5804 30 SVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 30 ~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~~ 106 (113)
++.++|++||++|+++++.++|+++|++|+..++.+|+||+.||.+|+++||+.|+++|.++||+|++|+++++...
T Consensus 9 ~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~ 85 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQL 85 (268)
T ss_dssp CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcccCchHHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHh
Confidence 57899999999998666778999999999999999999999999999999999999999999999999999988653
No 2
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=2.2e-14 Score=117.61 Aligned_cols=76 Identities=24% Similarity=0.199 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy5804 30 SVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 30 ~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei~~~ 105 (113)
+++++|++||++|++.++.++|+++|++|+..++.+|+||+.||.+|+++||+.|+++|.+++|+|+.|+++++..
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~ 78 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ 78 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999987788899999999999999999999999999999999999999999999999999998765
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=99.48 E-value=5.1e-14 Score=106.15 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHH--hcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHHHHHH
Q psy5804 26 VNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY--NLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEINIEDL 102 (113)
Q Consensus 26 ~~~~~~~~~Fk~Fl~~f~~~~~~~~Y~e~L~~~~--~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~av~ei 102 (113)
....+++++|++||++| +|+++|++|. ..++.+|+||+.||.+|+++||+.|.++|.++||+|++|++++
T Consensus 9 ~~~~~~~~~f~~Fl~~~-------~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~ 80 (279)
T 1ltl_A 9 VDKSKTLTKFEEFFSLQ-------DYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNI 80 (279)
T ss_dssp CCHHHHHHHHHHHTTSH-------HHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTT
T ss_pred CChHHHHHHHHHHhccc-------hHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 35678999999999887 5999999999 7889999999999999999999999999999999999999875
No 4
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=84.70 E-value=0.4 Score=28.00 Aligned_cols=47 Identities=4% Similarity=-0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI 97 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~ 97 (113)
-..+|++++..+-..|.-=+..|..-+|.|+..|.++|++++..+.+
T Consensus 12 qf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e 58 (61)
T 2f4m_B 12 QFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 58 (61)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcc
Confidence 44567777776666666667788899999999999999999988743
No 5
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=83.66 E-value=0.27 Score=29.74 Aligned_cols=45 Identities=4% Similarity=0.006 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804 53 DSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI 97 (113)
Q Consensus 53 e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~ 97 (113)
.+|++++..+-..|.-=+..|.+-+|.|+..|.++|.++|..+.+
T Consensus 16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcC
Confidence 367777776666666667788899999999999999999998854
No 6
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=77.46 E-value=8.7 Score=28.99 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.++|++.+..+-.-++|+-+=-..|-..+-..+.++ |..++....+++++++.+++.-.+|
T Consensus 233 G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs 301 (305)
T 1rvg_A 233 GIHPEDIKKAISLGIAKINTDTDLRLAFTALIREALNKNPKEFDPRKYLGPAREAVKEVVKSRMELFGS 301 (305)
T ss_dssp CCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678888999999999999766667777787777776 7888999999999999999887765
No 7
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=77.05 E-value=9.6 Score=28.40 Aligned_cols=64 Identities=13% Similarity=-0.027 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..=.++|++.+..|-.-++|+-+=-..|-..+-..+.++ |..++....+++++.+.+++.-.+|
T Consensus 212 G~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs 280 (286)
T 1gvf_A 212 DVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGS 280 (286)
T ss_dssp TCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhCcccCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678888888999999999766667777777777765 7788999999999999999987776
No 8
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=73.98 E-value=13 Score=28.10 Aligned_cols=63 Identities=8% Similarity=-0.005 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.++|++.+..+-.-++|+-+=-..|-..+-..+.++ |..++....+|+++++.+++.-.+|
T Consensus 236 ~p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~vr~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs 303 (307)
T 3n9r_A 236 VPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGS 303 (307)
T ss_dssp CCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678999999999999999665556777777777665 6789999999999999999887766
No 9
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=71.97 E-value=14 Score=28.04 Aligned_cols=63 Identities=8% Similarity=-0.122 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.++|++.+..+-.-++||-+=-..|-..+-..+.++ |..++....+++++++.+++.-.+|
T Consensus 236 vp~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~dpr~~l~~~~~a~~~~v~~~~~~~gs 303 (323)
T 2isw_A 236 VPIESIVHAIGEGVCKINVDSDSRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGS 303 (323)
T ss_dssp CCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCTTCCCTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHCCCeEEEEChHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44578999999999999999766667777777777775 6788999999999999999887765
No 10
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=71.40 E-value=16 Score=28.18 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=50.3
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHh
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----------------------YNLGQYFLEINIEDLTSWR 106 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----------------------P~e~ip~fe~av~ei~~~~ 106 (113)
.=.++|++.+..+-.-++|+-+=-..|-..+-..+.++ |..++...++++++.+.++
T Consensus 268 ~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~~~~~g~p~~~~~~n~~~~Dpr~~l~~~~~a~~~~v~~~ 347 (357)
T 3qm3_A 268 SELKDIKNAVSYGVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGEESMIKRLEIA 347 (357)
T ss_dssp CCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEEEEECHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCceEEEechHHHHHHHHHHHHHHHhCchhhhcccCCccccccCCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 45678888888898899998655556766666666553 6789999999999999999
Q ss_pred hhhhcC
Q psy5804 107 IFKINS 112 (113)
Q Consensus 107 ~~~~~~ 112 (113)
+.-.+|
T Consensus 348 ~~~~gs 353 (357)
T 3qm3_A 348 FEDLNC 353 (357)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 988776
No 11
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=69.87 E-value=2.1 Score=33.05 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=43.4
Q ss_pred HHHHhhhcCCCchhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHH
Q psy5804 37 EFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEI 97 (113)
Q Consensus 37 ~Fl~~f~~~~~~~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~ 97 (113)
+||++- ....+|+++++.+-..|.-=+..|.+-+|.|+..|.+||.++|..+.+
T Consensus 238 ~~Lr~~-------pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e 291 (368)
T 1oqy_A 238 EFLRDQ-------PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 291 (368)
T ss_dssp HHHHHS-------HHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhcC-------hHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcC
Confidence 677663 255789988888766666666788899999999999999999999863
No 12
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=69.15 E-value=19 Score=26.89 Aligned_cols=63 Identities=14% Similarity=0.045 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----hHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 50 KYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----YNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 50 ~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
.=.++|++.+..|-.-++|+-+=-..|-..+-..+.++ |..++....+++++.+.+++.-.+|
T Consensus 217 ~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~~~r~~~~~~~~~~dpr~~~~~~~~a~~~~v~~~~~~~gs 284 (288)
T 3q94_A 217 IPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGS 284 (288)
T ss_dssp CCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHCSSCCCTHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCeEEEEChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567888888898889998665566777777777653 7789999999999999999887766
No 13
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=67.69 E-value=21 Score=27.36 Aligned_cols=64 Identities=6% Similarity=-0.006 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh------------------hHHHHHHHHHHHHHHHHHhhhhh
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN------------------YNLGQYFLEINIEDLTSWRIFKI 110 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~------------------P~e~ip~fe~av~ei~~~~~~~~ 110 (113)
..=.++|++.+..+-.-++|+-+=-..|-..+-..+.++ |..++...++++++.+.+.+.-.
T Consensus 256 G~p~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~~~~~g~~~n~~~~Dpr~~l~~~~~a~~~~v~~~~~~~ 335 (349)
T 3elf_A 256 GSLKSEIEEALRYGVVKMNVDTDTQYAFTRPIAGHMFTNYDGVLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACNDL 335 (349)
T ss_dssp TCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHTHHHHSCCTTCCCCHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCEEEEcchHHHHHHHHHHHHHHHhCccccccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345578999999999999999665566766676666653 66789999999999999999887
Q ss_pred cC
Q psy5804 111 NS 112 (113)
Q Consensus 111 ~~ 112 (113)
||
T Consensus 336 gs 337 (349)
T 3elf_A 336 HC 337 (349)
T ss_dssp TC
T ss_pred CC
Confidence 76
No 14
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=66.31 E-value=23 Score=27.24 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHH
Q psy5804 49 YKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRN-----------------------YNLGQYFLEINIEDLTSW 105 (113)
Q Consensus 49 ~~Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~-----------------------P~e~ip~fe~av~ei~~~ 105 (113)
..=.++|++.+..+-.-++||-+=-..|-..+-..+.++ |..++...++++++.+.+
T Consensus 268 G~~~e~i~~ai~~GV~KiNi~Tdl~~A~~~~vr~~~~~~~~~~~~~~g~~~~~~~p~~k~~Dpr~~l~~~~~a~~~~v~~ 347 (358)
T 1dos_A 268 GSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEK 347 (358)
T ss_dssp TCCHHHHHHHHHTTEEEEEECHHHHHHHHHHHHHHHHHHGGGSSSSEEETTEEEEECHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCeEEEEcHHHHHHHHHHHHHHHHhcchhhhhccCCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999665567776777666654 777899999999999999
Q ss_pred hhhhhcC
Q psy5804 106 RIFKINS 112 (113)
Q Consensus 106 ~~~~~~~ 112 (113)
++.-.+|
T Consensus 348 ~~~~~gs 354 (358)
T 1dos_A 348 AFQELNA 354 (358)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 9887776
No 15
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=62.35 E-value=3.4 Score=28.74 Aligned_cols=48 Identities=13% Similarity=-0.034 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHHhhHHHHHHHHHH
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNYNLGQYFLEIN 98 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~~P~e~ip~fe~a 98 (113)
-..+|++++..+-..|.-=+..|.+-+|.|+..|.++|.++|..+.+.
T Consensus 34 qf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep 81 (171)
T 2qsf_X 34 DLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEA 81 (171)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCc
Confidence 445677777766555555566777899999999999999999998643
No 16
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=59.49 E-value=23 Score=26.75 Aligned_cols=62 Identities=6% Similarity=-0.054 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCcEEEEechhhhhhchhHHHHHHH-hhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 51 YRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKR-NYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 51 Y~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~~-~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
=.++|++.+..+-.-++|+-+=-..|-..+-..+.+ .|..++....+|+++++.+++.-+.|
T Consensus 233 p~e~i~~ai~~GV~KiNi~Tdl~~a~~~~~r~~~~~~~~~~~~~~~~~a~~~~v~~~i~~fgs 295 (306)
T 3pm6_A 233 TKEIFEKCIERGVAKVNVNRAVNNEYVKVMREKAGSLPITRLHEEVTNAMQAAVEKIMDMIDS 295 (306)
T ss_dssp CHHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456777788888888888865444554444443332 37899999999999999999876655
No 17
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=36.58 E-value=72 Score=19.39 Aligned_cols=25 Identities=4% Similarity=-0.202 Sum_probs=14.4
Q ss_pred hhHHHHHHHh---hHHHHHHHHHHHHHH
Q psy5804 78 INNIDSLKRN---YNLGQYFLEINIEDL 102 (113)
Q Consensus 78 ~~La~~L~~~---P~e~ip~fe~av~ei 102 (113)
..|...+++. |.+++.+=..++.++
T Consensus 31 q~fs~~~iek~i~PEeiV~iHk~~i~el 58 (84)
T 1w53_A 31 QKFSRKTIEHQIPPEEIISIHRKVLKEL 58 (84)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3555555554 666666666666554
No 18
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=34.70 E-value=29 Score=20.47 Aligned_cols=17 Identities=6% Similarity=-0.070 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy5804 92 QYFLEINIEDLTSWRIF 108 (113)
Q Consensus 92 ip~fe~av~ei~~~~~~ 108 (113)
+.+|+.|+++++++-.+
T Consensus 12 leafekalkemirqark 28 (85)
T 2kl8_A 12 LEAFEKALKEMIRQARK 28 (85)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57889999998877543
No 19
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.26 E-value=58 Score=21.95 Aligned_cols=26 Identities=19% Similarity=-0.064 Sum_probs=20.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy5804 85 KRNYNLGQYFLEINIEDLTSWRIFKIN 111 (113)
Q Consensus 85 ~~~P~e~ip~fe~av~ei~~~~~~~~~ 111 (113)
.++|.+.+.-++.++.++ ..+|.+||
T Consensus 40 ~edp~~Ll~El~~~~~~L-~~Li~~IN 65 (154)
T 3kdq_A 40 AENPHEILTELEELTTRI-NDLVRRIN 65 (154)
T ss_dssp SSCHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456888888888887774 78888887
No 20
>4ffe_X CPXV018 protein; viral immune evasion proteins, structural genomics, NKG2D DE ligand, niaid, national institute of allergy and infectious diseases; 2.25A {Cowpox virus}
Probab=23.65 E-value=39 Score=22.20 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCCcceeecCCCCCcccccccccHHHHHHHHHHHHHhhh
Q psy5804 4 FDDAGIFFSDNFGAEDQQSGIQVNLQSVKRKFKEFLRQFH 43 (113)
Q Consensus 4 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Fk~Fl~~f~ 43 (113)
||+-.|+-+=.+.-+++ +-..--++.|.+|++-|+
T Consensus 34 fdgkdi~psi~fmig~~-----~fl~~yknif~eff~lfr 68 (151)
T 4ffe_X 34 FDGKDIRPTIPFMIGDE-----IFLPFYKNVFSEFFSLFR 68 (151)
T ss_dssp ECSSCEEECSGGGTTCS-----SHHHHHHHHHHHHHHTCC
T ss_pred ecCcccccccceeeCCe-----eehHHHHHHHHHHHHHHh
Confidence 66666655544443322 234556889999999995
No 21
>2rre_A NVL2, putative uncharacterized protein; nucleolar localization signal, RNA binding, alternatively SP domain, nuclear protein; NMR {Mus musculus}
Probab=20.19 E-value=60 Score=19.56 Aligned_cols=58 Identities=9% Similarity=-0.057 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCcEEEEechhhhhhchhHHHHHH-HhhHHHHHHHHHHHHHHHHHhhhhhcC
Q psy5804 52 RDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLK-RNYNLGQYFLEINIEDLTSWRIFKINS 112 (113)
Q Consensus 52 ~e~L~~~~~~~~~sL~Vd~~dL~~f~~~La~~L~-~~P~e~ip~fe~av~ei~~~~~~~~~~ 112 (113)
..++.+.+......-+||.++|.. +|-..-. +++..-..+|..-|.+++..++-+-++
T Consensus 18 ~~RV~qyl~~n~~~~YvD~~~ma~---~Lq~~Y~~eY~Rrk~~~Fr~~Veka~~~I~~~~~~ 76 (78)
T 2rre_A 18 KQRVIQYLSSNRCGKYVDTGILAS---DLQRLYSVDYGRRKRNAFRIQVEKVFSIISSEKEL 76 (78)
T ss_dssp HHHHHHHHHHCCCSSSCCHHHHHH---HHHHHTTTTTCSSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCccccHHHHHH---HHHHHhhhhccccccccHHHHHHHHHHHHHHHccC
Confidence 334444444444445567666653 5555554 666677777777777777666655443
Done!