RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5804
         (113 letters)



>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 25.7 bits (55), Expect = 1.2
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 2  EGFDDAGIFFSD--NFGAEDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY 59
          + +D   + F+   +F     +S +        R   E +  F +     K+    K   
Sbjct: 2  QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61


>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54)
          N-terminal domain {Archaeon Methanobacterium
          thermoautotrophicum [TaxId: 145262]}
          Length = 239

 Score = 25.4 bits (55), Expect = 1.5
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 26 VNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKR--NYNLGQYFLEINIEDLTSF 76
          V+      KF+EF            Y+D +            +E++  DL  F
Sbjct: 1  VDKSKTLTKFEEFFS-------LQDYKDRVFEAIEKYPNVRSIEVDYLDLEMF 46


>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
          {Plasmodium vivax [TaxId: 5855]}
          Length = 373

 Score = 24.5 bits (52), Expect = 3.9
 Identities = 7/70 (10%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 31 VKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLK-RNYN 89
          ++R + + L+   + N      + +K  +N  +           ++  +  D ++  +  
Sbjct: 8  IERPYDKVLKTISKKNLK----NYIKETFNFFKSGY-----MKQNYLGSENDVIELDDVA 58

Query: 90 LGQYFLEINI 99
             ++ E  +
Sbjct: 59 NIMFYGEGEV 68


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 23.7 bits (51), Expect = 6.4
 Identities = 3/21 (14%), Positives = 9/21 (42%)

Query: 29  QSVKRKFKEFLRQFHEGNFNY 49
           ++   + ++   Q H+    Y
Sbjct: 261 KNCIERLQQIFLQHHQIIQQY 281


>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal
           domain {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 88

 Score = 23.1 bits (50), Expect = 6.6
 Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 62  GQYFLEINIEDLTSFFIN---NIDSLKR---NYNLGQYFLEINIEDLTSW 105
           G +F   ++  +           + + +     ++ +YF  I+ E++   
Sbjct: 36  GDFFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGISREEIAEA 85


>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella
          pneumophila [TaxId: 446]}
          Length = 197

 Score = 23.3 bits (50), Expect = 7.3
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 29 QSVKRKFKEFLRQFHEGNFNYKYRDSLKRNYNLGQYFLEINIEDLTSFFINNIDSLKRNY 88
            +++  +E +  F     N K ++ + +   + + +     E++  FF     +L    
Sbjct: 3  PEIEKAQREIIEAF-----NAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLE- 56

Query: 89 NLGQYF 94
           +G Y 
Sbjct: 57 AVGDYL 62


>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
           botulinum, serotype A [TaxId: 1491]}
          Length = 417

 Score = 23.3 bits (50), Expect = 9.5
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 18  EDQQSGIQVNLQSVKRKFKEFLRQFHEGNFNYKYRDSLKRNY-NLGQYFLEINIEDLTSF 76
           ED      V+     + +K     + E NF   ++   ++ Y N  +   +INI    ++
Sbjct: 323 EDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVKFFKVLNRKTYLNFDKAVFKINIVPKVNY 382

Query: 77  FIN---NIDSLKRNYNLGQYFLEINIEDLTSWRIF 108
            I    N+ +     N      EIN  + T  + F
Sbjct: 383 TIYDGFNLRNTNLAANFNGQNTEINNMNFTKLKNF 417


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.411 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,388
Number of extensions: 19358
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 25
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)