BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5805
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+
Sbjct: 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS 130
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS 130
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+
Sbjct: 87 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 138
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS 125
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVS 135
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVS 135
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS 166
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS 135
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
+VIVYS+ +R +F+ A ++ L + +ILV NKADL R R+V+
Sbjct: 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS 130
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F++V+++ +R++F + + + K + V+LV NKADLE +RQV S
Sbjct: 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F++V+SV +R +F++ + + K E +IL+ NKADL+ +RQVT
Sbjct: 80 FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQE 131
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
FV+VY + +R +F++ + L + K +ILV NKADL+ RQV+
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70
F +VYS+ + TF +D+ + + K + +ILV NK DLE R
Sbjct: 80 FALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 126
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70
F +VYS+ + TF +D+ + + K + +ILV NK DLE R
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER 124
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
+V+VYSV +F+ E + + L + V+LV NKADL R+V
Sbjct: 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV 147
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70
F +VYS+ + TF +D+ + + K + +ILV NK DLE R
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70
F +VYS+ + TF +D+ + + K + +ILV NK DLE R
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT 142
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT 137
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT 142
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT 142
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 138
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 130
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 142
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 130
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQV 72
F++V+S+ E ++F + + + K +K +++V NK+DLE RRQV
Sbjct: 82 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 131
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQV 72
F++V+S+ E ++F + + + K +K +++V NK+DLE RRQV
Sbjct: 78 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 127
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT 73
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVS 130
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT 73
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVS 130
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT 73
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+
Sbjct: 97 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVS 144
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74
F++++ + +++F + + L + Y ++L+ NKADL +R+V
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 161
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74
F++++ + +++F + + L + Y ++L+ NKADL +R+V
Sbjct: 97 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74
F++++ + +++F + + L + Y ++L+ NKADL +R+V
Sbjct: 97 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
F++VYS++ +++F+ + M + K + VILV NK DL
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 24 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQV 72
F+++Y + ++F +D +KT WD+ VILV NK D+E R V
Sbjct: 99 FILMYDITNEESFNAVQDWATQIKTYSWDNA-----QVILVGNKCDMEEERVV 146
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 24 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQV 72
F+++Y + +++F +D +KT WD+ VILV NK DLE R V
Sbjct: 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNA-----QVILVGNKCDLEDERVV 145
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74
F++ + + +++F + L + Y ++L+ NKADL +R+V
Sbjct: 97 FLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74
F++ + + +++F + L + Y ++L+ NKADL +R+V
Sbjct: 97 FLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTH 74
++VY + R T+ L D++ + +IL+ NKADLE +R VT+
Sbjct: 92 LMVYDITRRSTYNHLSSWLT---DARNLTNPNTVIILIGNKADLEAQRDVTY 140
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTH 74
++VY + R T+ L D++ + +IL+ NKADLE +R VT+
Sbjct: 107 LMVYDITRRSTYNHLSSWLT---DARNLTNPNTVIILIGNKADLEAQRDVTY 155
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 24 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVT 73
F+++Y + ++F +D +KT WD+ V+LV NK D+E R V+
Sbjct: 81 FILMYDITNEESFNAVQDWSTQIKTYSWDNA-----QVLLVGNKCDMEDERVVS 129
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 17 QTYH--PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
Q+Y+ + ++ Y + ++F+ + L+ + +Y K + +LV NK DL RR+V+
Sbjct: 93 QSYYRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLAERREVS 150
Query: 74 H 74
Sbjct: 151 Q 151
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY V + +TF + KT+ + E ++LV NK+D+E R
Sbjct: 84 ILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDMETR 127
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY V + +TF + KT+ + E ++LV NK+D+E R
Sbjct: 97 ILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDMETR 140
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHS 75
F++VYS+ R++ ++ + + + + + K E ++LV NK D R+V S
Sbjct: 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS 130
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++VY + R++F+ ++ + + + G+ +I LV NK DL R+VT+
Sbjct: 78 IVVYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGDLRKVTY 126
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++V+ + + +T+ E LK L+D V+LV NK+DL + R+V
Sbjct: 87 LLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQAREV 133
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY + + +TF + KT+ + E ++LV NK+D+E R
Sbjct: 80 ILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDMETR 123
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++VY + ++TF +A+ +K L + VI L NKADL +R V +
Sbjct: 85 IVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKADLANKRMVEY 133
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++V+ + + +T+ E LK L+D V+LV NK+DL + R+V
Sbjct: 102 LLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQAREV 148
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKA 64
F +L+ ++++ V V+VY + +F++ D ++T S I ++LV NK
Sbjct: 64 FRSLIPSYIR--DSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI----IMLVGNKT 117
Query: 65 DLERRRQVT 73
DL +RQ+T
Sbjct: 118 DLADKRQIT 126
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 36 FKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
++A ++ K++W+++++ +VIL NK DL
Sbjct: 266 LQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY V + +TF + KT+ + E ++LV NK+D E R
Sbjct: 80 ILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXETR 123
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 36 FKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
++A ++ K++W+++++ +VIL NK DL
Sbjct: 266 LQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70
++VY + ++ +F+ E LK L D+ ++LV NK+DL+ R
Sbjct: 85 LLVYDITKKNSFENIEKWLKELRDNA-DSNIVILLVGNKSDLKHLR 129
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQV 72
++VY + R+TF L+ D++ ++L+ NK+DLE RR V
Sbjct: 98 LLVYDITRRETFNHLTSWLE---DARQHSSSNMVIMLIGNKSDLESRRDV 144
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQV 72
++VY + R TF L+ D++ ++L+ NK+DLE RR+V
Sbjct: 87 LLVYDITRRDTFNHLTTWLE---DARQHSNSNMVIMLIGNKSDLESRREV 133
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
F++++ + ++F + + L Y ++L NK+DLE +R V
Sbjct: 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV 145
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKA 64
F +L+ ++++ V V+VY + +F + D ++T S I ++LV NK
Sbjct: 76 FRSLIPSYIR--DSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI----IMLVGNKT 129
Query: 65 DLERRRQVT 73
DL +RQV+
Sbjct: 130 DLSDKRQVS 138
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY + + +TF + KT+ + E ++LV NK+D E R
Sbjct: 80 ILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXETR 123
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 36 FKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
++A ++ K++W+++++ +VIL NK DL
Sbjct: 252 LQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 36 FKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
++A ++ K++W+++++ +VIL NK DL
Sbjct: 252 LQEALNLFKSIWNNRWLRTISVILFLNKQDL 282
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKA 64
F +L+ ++++ V V+VY + +F++ D ++T S I ++LV NK
Sbjct: 78 FRSLIPSYIR--DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKT 131
Query: 65 DLERRRQVT 73
DL +RQV+
Sbjct: 132 DLADKRQVS 140
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 36 FKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
++A ++ K++W+++++ +VIL NK DL
Sbjct: 266 LQEALNLFKSIWNNRWLRTISVILFLNKQDL 296
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER---RRQVTH 74
+D ++ LW Y G + +I V + AD +R RQ H
Sbjct: 375 GQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH 413
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVT 73
++VY + R+T+ + L D++ + VIL NK DL+ R+VT
Sbjct: 102 LLVYDITSRETYNS---LAAWLTDARTLASPNIVVILCGNKKDLDPEREVT 149
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVT 73
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT
Sbjct: 88 LLVYDITSRETYNALTNWLT---DARMLASQNIVIILCGNKKDLDADREVT 135
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVT 73
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT
Sbjct: 85 LLVYDITSRETYNALTNWLT---DARMLASQNIVIILCGNKKDLDADREVT 132
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 19 YHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYI 52
+H V+ + V+E TFK D+LK+LW S I
Sbjct: 198 HHELVYEAIIXVLESTGESTFKXILDLLKSLWKSSTI 234
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER 68
+D ++ LW Y G + +I V + AD +R
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR 82
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVT 73
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT
Sbjct: 87 LLVYDITSRETYNALTNWLT---DARMLASQNIVIILCGNKKDLDADREVT 134
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER 68
+D ++ LW Y G + +I V + AD +R
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR 82
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER 68
+D ++ LW Y G + +I V + AD +R
Sbjct: 53 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR 82
>pdb|2JZH|A Chain A, Structure Of Iib Domain Of The Mannose Transporter Of E.
Coli
Length = 173
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 42 MLKTLWDSKYIGEKAVILVANKADLER 68
M++ + KY GE+ ++L N D+ER
Sbjct: 76 MIRVYNNPKYAGERVMLLFTNPTDVER 102
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER 68
+D ++ LW Y G + +I V + AD +R
Sbjct: 65 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR 94
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 39 AEDMLKTLWDSKYIGEKAVILVANKADLER 68
+D ++ LW Y G + +I V + AD +R
Sbjct: 66 GQDKIRPLWRHYYTGTQGLIFVVDCADRDR 95
>pdb|1VSQ|C Chain C, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|2JZN|C Chain C, Solution Nmr Structure Of The Productive Complex Between
Iiamannose And Iibmannose Of The Mannose Transporter Of
The E. Coli Phosphotransferase System
pdb|2JZO|D Chain D, Solution Nmr Structure Of The Non-Productive Complex
Between Iiamannose And Iibmannose Of The Mannose
Transporter Of The E. Coli Phosphotransferase System
Length = 165
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 42 MLKTLWDSKYIGEKAVILVANKADLER 68
M++ + KY GE+ ++L N D+ER
Sbjct: 68 MIRVYNNPKYAGERVMLLFTNPTDVER 94
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKA 64
F +L+ ++++ V V+VY + +F++ D ++T S I ++LV NK
Sbjct: 68 FRSLIPSYIR--DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKT 121
Query: 65 DLERRRQVT 73
DL +RQV+
Sbjct: 122 DLADKRQVS 130
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 19 YHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYI 52
+H V+ + V+E TFK D+LK+LW S I
Sbjct: 212 HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 248
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
++ Y + +R +F ++ + KY G V +L+ NK+DL R+V+
Sbjct: 106 ILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLSELREVS 153
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKA 64
F +L+ ++++ V V+VY + +F++ D ++T S I ++LV NK
Sbjct: 63 FRSLIPSYIR--DSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKT 116
Query: 65 DLERRRQVT 73
DL +RQV+
Sbjct: 117 DLADKRQVS 125
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 19 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-----VILVANKADLERRRQV 72
Y ++VY + ++F+ ED + K + E++ V LV NK DLE R +
Sbjct: 78 YGAQGVLLVYDITNYQSFENLEDWYTVV---KKVSEESETQPLVALVGNKIDLEHMRTI 133
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++VY + + T++ E LK L D ++LV NK+DL R V
Sbjct: 97 LLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 143
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++VY + + T++ E LK L D ++LV NK+DL R V
Sbjct: 82 LLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 128
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++VY + + T++ E LK L D ++LV NK+DL R V
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 152
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++VY + + T++ E LK L D ++LV NK+DL R V
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 152
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
++VY + + T++ E LK L D ++LV NK+DL R V
Sbjct: 85 LLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,851,037
Number of Sequences: 62578
Number of extensions: 53121
Number of successful extensions: 383
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 102
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)