Query psy5805
Match_columns 75
No_of_seqs 152 out of 1198
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 18:25:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.8 3.1E-21 1.1E-25 115.6 7.3 70 2-74 69-138 (216)
2 3q72_A GTP-binding protein RAD 99.7 1.2E-16 4E-21 90.4 6.7 69 3-73 57-125 (166)
3 3cbq_A GTP-binding protein REM 99.7 1.3E-16 4.6E-21 93.4 7.0 69 3-73 80-149 (195)
4 2g3y_A GTP-binding protein GEM 99.7 1.1E-16 3.7E-21 95.5 6.0 68 4-73 96-164 (211)
5 3kkq_A RAS-related protein M-R 99.7 1.9E-16 6.6E-21 90.9 6.8 69 3-73 74-142 (183)
6 3t5g_A GTP-binding protein RHE 99.7 2.7E-16 9.3E-21 90.2 7.2 69 3-73 62-130 (181)
7 2hup_A RAS-related protein RAB 99.7 3E-16 1E-20 92.1 7.0 68 3-73 86-153 (201)
8 2fu5_C RAS-related protein RAB 99.7 3.3E-16 1.1E-20 89.9 7.0 68 3-73 65-132 (183)
9 3q3j_B RHO-related GTP-binding 99.6 4.5E-16 1.5E-20 92.2 6.6 62 3-68 83-145 (214)
10 3q85_A GTP-binding protein REM 99.6 3.6E-16 1.2E-20 88.6 5.6 69 3-73 59-128 (169)
11 2ew1_A RAS-related protein RAB 99.6 7.3E-16 2.5E-20 90.8 6.9 68 3-73 83-150 (201)
12 1c1y_A RAS-related protein RAP 99.6 5.5E-16 1.9E-20 87.4 6.2 69 3-73 59-127 (167)
13 2nzj_A GTP-binding protein REM 99.6 9.9E-16 3.4E-20 87.1 7.2 69 3-73 60-130 (175)
14 3oes_A GTPase rhebl1; small GT 99.6 1.5E-15 5E-20 88.8 7.3 69 3-73 80-148 (201)
15 1z06_A RAS-related protein RAB 99.6 1.2E-15 4E-20 88.3 6.7 69 3-73 77-146 (189)
16 1r2q_A RAS-related protein RAB 99.6 2.3E-15 7.7E-20 85.0 7.7 68 3-73 63-130 (170)
17 3dz8_A RAS-related protein RAB 99.6 8.2E-16 2.8E-20 89.2 5.9 68 3-73 80-147 (191)
18 3c5c_A RAS-like protein 12; GD 99.6 7.1E-16 2.4E-20 89.5 5.5 68 3-73 77-146 (187)
19 1u8z_A RAS-related protein RAL 99.6 1.2E-15 4.2E-20 85.8 6.3 69 3-73 60-128 (168)
20 1m7b_A RND3/RHOE small GTP-bin 99.6 1.6E-15 5.4E-20 87.5 6.8 62 3-68 63-125 (184)
21 1r8s_A ADP-ribosylation factor 99.6 4.8E-15 1.7E-19 83.6 8.6 65 3-69 52-116 (164)
22 2efe_B Small GTP-binding prote 99.6 4.5E-15 1.5E-19 84.8 8.6 68 3-73 69-136 (181)
23 2fn4_A P23, RAS-related protei 99.6 1.2E-15 4.2E-20 87.0 6.1 69 3-73 65-133 (181)
24 1fzq_A ADP-ribosylation factor 99.6 3.4E-15 1.2E-19 86.2 8.0 66 3-70 68-133 (181)
25 2a5j_A RAS-related protein RAB 99.6 1.7E-15 5.9E-20 87.8 6.7 68 3-73 78-145 (191)
26 1f6b_A SAR1; gtpases, N-termin 99.6 2.6E-15 9E-20 87.9 7.5 64 3-68 77-140 (198)
27 2cjw_A GTP-binding protein GEM 99.6 2.8E-15 9.7E-20 87.5 7.5 68 4-73 65-133 (192)
28 1z0j_A RAB-22, RAS-related pro 99.6 4.1E-15 1.4E-19 84.0 7.9 68 3-73 63-130 (170)
29 3tkl_A RAS-related protein RAB 99.6 5.9E-15 2E-19 85.3 8.6 68 3-73 73-140 (196)
30 3bc1_A RAS-related protein RAB 99.6 2.7E-15 9.4E-20 86.2 7.1 69 3-73 78-146 (195)
31 2bov_A RAla, RAS-related prote 99.6 2.4E-15 8.1E-20 87.6 6.9 69 3-73 70-138 (206)
32 1zbd_A Rabphilin-3A; G protein 99.6 4.3E-15 1.5E-19 86.6 7.9 68 3-73 65-132 (203)
33 1kao_A RAP2A; GTP-binding prot 99.6 2.3E-15 7.8E-20 84.6 6.5 69 3-73 59-127 (167)
34 2bcg_Y Protein YP2, GTP-bindin 99.6 4.4E-15 1.5E-19 86.9 7.9 68 3-73 65-132 (206)
35 2yc2_C IFT27, small RAB-relate 99.6 2.5E-15 8.6E-20 87.5 6.7 69 3-73 81-152 (208)
36 2il1_A RAB12; G-protein, GDP, 99.6 2E-15 6.8E-20 87.8 6.1 68 3-73 83-150 (192)
37 2fg5_A RAB-22B, RAS-related pr 99.6 4E-15 1.4E-19 86.4 7.4 68 3-73 80-147 (192)
38 3tw8_B RAS-related protein RAB 99.6 5.3E-15 1.8E-19 84.3 7.8 67 3-73 66-132 (181)
39 2bme_A RAB4A, RAS-related prot 99.6 4.8E-15 1.6E-19 85.1 7.6 68 3-73 67-134 (186)
40 3reg_A RHO-like small GTPase; 99.6 3.3E-15 1.1E-19 86.7 7.0 63 3-69 79-142 (194)
41 1m2o_B GTP-binding protein SAR 99.6 6.2E-15 2.1E-19 85.8 8.1 64 3-68 75-138 (190)
42 1azs_C GS-alpha; complex (lyas 99.6 1.9E-15 6.4E-20 97.6 6.4 66 3-70 225-300 (402)
43 2a9k_A RAS-related protein RAL 99.6 4.6E-15 1.6E-19 84.9 7.3 69 3-73 74-142 (187)
44 3cpj_B GTP-binding protein YPT 99.6 2.2E-15 7.4E-20 89.5 6.1 68 3-73 70-137 (223)
45 1z0f_A RAB14, member RAS oncog 99.6 5.1E-15 1.7E-19 84.2 7.2 68 3-73 72-139 (179)
46 2g6b_A RAS-related protein RAB 99.6 4E-15 1.4E-19 85.0 6.7 68 3-73 68-135 (180)
47 1gwn_A RHO-related GTP-binding 99.6 3.8E-15 1.3E-19 87.9 6.8 62 3-68 84-146 (205)
48 2gf9_A RAS-related protein RAB 99.6 5E-15 1.7E-19 85.7 7.0 68 3-73 79-146 (189)
49 1ek0_A Protein (GTP-binding pr 99.6 8.9E-15 3.1E-19 82.5 8.0 64 3-69 60-123 (170)
50 3ihw_A Centg3; RAS, centaurin, 99.6 2.5E-15 8.5E-20 87.2 5.7 64 3-73 75-140 (184)
51 2hxs_A RAB-26, RAS-related pro 99.6 3.4E-15 1.2E-19 85.1 6.2 69 3-73 64-134 (178)
52 2atx_A Small GTP binding prote 99.6 5.5E-15 1.9E-19 85.7 7.0 63 3-69 74-137 (194)
53 3l0i_B RAS-related protein RAB 99.6 2.2E-15 7.5E-20 88.0 5.3 68 3-73 90-157 (199)
54 1z08_A RAS-related protein RAB 99.6 2.6E-15 8.7E-20 85.0 5.4 68 3-73 63-130 (170)
55 1ksh_A ARF-like protein 2; sma 99.6 1.1E-14 3.7E-19 83.8 7.8 66 3-70 70-135 (186)
56 2xtz_A Guanine nucleotide-bind 99.6 1.8E-15 6.1E-20 96.3 4.8 65 3-69 191-265 (354)
57 2y8e_A RAB-protein 6, GH09086P 99.6 6.7E-15 2.3E-19 83.7 6.8 68 3-73 71-138 (179)
58 2b6h_A ADP-ribosylation factor 99.6 1.3E-14 4.6E-19 84.5 8.0 65 3-69 81-145 (192)
59 3t1o_A Gliding protein MGLA; G 99.6 7.5E-15 2.6E-19 84.7 6.9 63 3-69 82-150 (198)
60 4bas_A ADP-ribosylation factor 99.6 6.7E-15 2.3E-19 85.3 6.7 65 3-69 71-142 (199)
61 2o52_A RAS-related protein RAB 99.6 6.5E-15 2.2E-19 86.2 6.5 68 3-73 82-149 (200)
62 3c5h_A Glucocorticoid receptor 99.6 9.7E-16 3.3E-20 93.2 3.0 70 3-72 126-216 (255)
63 2j0v_A RAC-like GTP-binding pr 99.6 2.8E-15 9.5E-20 88.0 4.8 66 2-71 64-130 (212)
64 3r7w_B Gtpase2, GTP-binding pr 99.6 2.4E-15 8.2E-20 95.1 4.7 64 2-69 53-121 (331)
65 1zj6_A ADP-ribosylation factor 99.6 1.7E-14 5.7E-19 83.3 7.9 64 3-68 68-131 (187)
66 2f7s_A C25KG, RAS-related prot 99.6 2.7E-15 9.1E-20 88.4 4.6 69 3-73 92-160 (217)
67 1upt_A ARL1, ADP-ribosylation 99.6 2.1E-14 7E-19 81.3 8.1 65 3-69 59-123 (171)
68 2q3h_A RAS homolog gene family 99.6 7.6E-15 2.6E-19 85.5 6.4 62 3-68 76-138 (201)
69 3bwd_D RAC-like GTP-binding pr 99.6 4.6E-15 1.6E-19 84.8 5.4 65 3-71 64-129 (182)
70 2h17_A ADP-ribosylation factor 99.6 2.5E-14 8.7E-19 82.3 8.3 65 3-69 73-137 (181)
71 2atv_A RERG, RAS-like estrogen 99.6 6.6E-15 2.2E-19 85.7 5.8 68 3-73 84-151 (196)
72 1z2a_A RAS-related protein RAB 99.6 8.3E-15 2.8E-19 82.6 6.1 66 3-72 62-127 (168)
73 3gj0_A GTP-binding nuclear pro 99.6 1.7E-14 5.7E-19 85.4 7.3 64 3-70 72-135 (221)
74 4fid_A G protein alpha subunit 99.5 1.7E-15 5.8E-20 96.1 3.1 65 3-69 169-243 (340)
75 2oil_A CATX-8, RAS-related pro 99.5 2E-14 6.8E-19 83.2 7.4 67 3-72 82-148 (193)
76 1x3s_A RAS-related protein RAB 99.5 2.7E-14 9.2E-19 82.4 7.9 63 3-67 72-134 (195)
77 1zd9_A ADP-ribosylation factor 99.5 2.2E-14 7.5E-19 83.1 7.5 65 3-69 75-139 (188)
78 4djt_A GTP-binding nuclear pro 99.5 1.2E-14 4.1E-19 85.6 6.5 68 3-73 69-136 (218)
79 1wms_A RAB-9, RAB9, RAS-relate 99.5 3E-14 1E-18 81.1 7.9 67 3-72 64-133 (177)
80 1g16_A RAS-related protein SEC 99.5 1.6E-14 5.6E-19 81.5 6.5 62 3-67 60-121 (170)
81 2h57_A ADP-ribosylation factor 99.5 6.1E-14 2.1E-18 81.1 9.0 65 3-69 75-141 (190)
82 4dsu_A GTPase KRAS, isoform 2B 99.5 4.1E-14 1.4E-18 81.2 8.1 64 3-68 60-123 (189)
83 2zej_A Dardarin, leucine-rich 99.5 2.3E-15 8E-20 87.0 2.7 66 3-72 64-130 (184)
84 2p5s_A RAS and EF-hand domain 99.5 1.2E-14 4.1E-19 84.8 5.7 62 3-67 85-146 (199)
85 1ky3_A GTP-binding protein YPT 99.5 1.6E-14 5.4E-19 82.4 6.0 63 3-67 66-131 (182)
86 2iwr_A Centaurin gamma 1; ANK 99.5 3.1E-14 1E-18 81.3 7.1 59 13-73 67-129 (178)
87 2gco_A H9, RHO-related GTP-bin 99.5 3.1E-14 1.1E-18 83.2 6.9 63 3-69 81-144 (201)
88 2x77_A ADP-ribosylation factor 99.5 3.2E-14 1.1E-18 82.2 6.8 65 3-69 74-138 (189)
89 1u0l_A Probable GTPase ENGC; p 99.5 6.3E-15 2.1E-19 91.7 4.1 61 5-71 71-132 (301)
90 1cip_A Protein (guanine nucleo 99.5 1.4E-14 4.9E-19 92.1 5.4 64 3-68 201-274 (353)
91 2ce2_X GTPase HRAS; signaling 99.5 5.5E-14 1.9E-18 78.7 7.1 64 3-68 59-122 (166)
92 3ohm_A Guanine nucleotide-bind 99.5 5.3E-15 1.8E-19 93.4 3.2 66 3-70 175-250 (327)
93 2j1l_A RHO-related GTP-binding 99.5 1.9E-14 6.6E-19 85.0 5.3 64 3-70 90-154 (214)
94 2erx_A GTP-binding protein DI- 99.5 3.4E-14 1.2E-18 80.2 6.1 69 3-73 59-128 (172)
95 3llu_A RAS-related GTP-binding 99.5 5.9E-14 2E-18 81.8 7.2 62 3-68 77-143 (196)
96 3cph_A RAS-related protein SEC 99.5 6.6E-14 2.2E-18 81.9 7.3 62 3-67 77-138 (213)
97 1mh1_A RAC1; GTP-binding, GTPa 99.5 4.4E-14 1.5E-18 80.8 6.5 63 3-69 61-124 (186)
98 3con_A GTPase NRAS; structural 99.5 7E-14 2.4E-18 80.7 7.2 64 3-68 77-140 (190)
99 1moz_A ARL1, ADP-ribosylation 99.5 6.5E-14 2.2E-18 80.2 7.0 65 3-69 70-134 (183)
100 4gzl_A RAS-related C3 botulinu 99.5 3.1E-14 1E-18 83.6 5.7 64 3-70 86-150 (204)
101 1vg8_A RAS-related protein RAB 99.5 7.2E-14 2.5E-18 81.4 6.4 63 3-67 65-130 (207)
102 2fv8_A H6, RHO-related GTP-bin 99.5 1.3E-13 4.3E-18 80.9 7.4 63 3-69 81-144 (207)
103 3o47_A ADP-ribosylation factor 99.5 9.9E-14 3.4E-18 87.2 6.2 66 3-70 217-282 (329)
104 3lvq_E ARF-GAP with SH3 domain 99.5 3.5E-13 1.2E-17 88.0 8.8 65 3-69 374-438 (497)
105 3clv_A RAB5 protein, putative; 99.5 5.7E-13 2E-17 76.8 8.8 64 3-72 101-164 (208)
106 1zcb_A G alpha I/13; GTP-bindi 99.5 6.3E-14 2.2E-18 89.4 4.7 64 3-68 209-282 (362)
107 2gf0_A GTP-binding protein DI- 99.4 2.4E-13 8.4E-18 78.6 6.6 64 3-68 64-128 (199)
108 3r7w_A Gtpase1, GTP-binding pr 99.4 5.1E-13 1.8E-17 83.2 6.7 64 3-68 60-129 (307)
109 2wkq_A NPH1-1, RAS-related C3 99.4 5E-13 1.7E-17 82.6 6.4 63 3-69 211-274 (332)
110 2ged_A SR-beta, signal recogni 99.4 7.9E-13 2.7E-17 76.4 5.6 70 3-72 99-174 (193)
111 1nrj_B SR-beta, signal recogni 99.4 9.8E-13 3.4E-17 77.4 6.0 70 3-72 63-138 (218)
112 3th5_A RAS-related C3 botulinu 99.1 4.3E-14 1.5E-18 82.6 0.0 63 3-69 86-149 (204)
113 2fh5_B SR-beta, signal recogni 99.3 6.5E-12 2.2E-16 73.7 7.8 66 3-70 62-131 (214)
114 2f9l_A RAB11B, member RAS onco 99.3 6.8E-12 2.3E-16 73.1 7.7 67 3-72 62-128 (199)
115 1oix_A RAS-related protein RAB 99.3 2.1E-11 7.1E-16 70.9 7.0 67 3-72 86-152 (191)
116 2yv5_A YJEQ protein; hydrolase 99.3 3.3E-12 1.1E-16 79.6 3.7 62 3-70 64-126 (302)
117 2lkc_A Translation initiation 99.1 2.6E-10 9E-15 64.7 5.5 56 3-68 63-121 (178)
118 2qu8_A Putative nucleolar GTP- 99.1 4E-10 1.4E-14 66.9 6.3 61 8-73 99-161 (228)
119 3dpu_A RAB family protein; roc 99.1 2.2E-10 7.5E-15 75.7 5.5 64 3-73 106-169 (535)
120 2wji_A Ferrous iron transport 99.1 3E-10 1E-14 64.4 5.3 64 3-73 58-127 (165)
121 2cxx_A Probable GTP-binding pr 99.1 1.9E-11 6.6E-16 70.0 0.2 64 5-70 65-138 (190)
122 2gj8_A MNME, tRNA modification 99.0 2.7E-10 9.1E-15 65.2 3.3 50 15-68 80-129 (172)
123 1svi_A GTP-binding protein YSX 98.9 9.9E-10 3.4E-14 63.2 4.4 61 5-72 89-152 (195)
124 2wjg_A FEOB, ferrous iron tran 98.9 2.9E-09 9.9E-14 60.9 4.3 63 3-72 62-130 (188)
125 1lnz_A SPO0B-associated GTP-bi 98.8 6.7E-09 2.3E-13 65.8 4.9 62 7-68 222-288 (342)
126 3l82_B F-box only protein 4; T 98.8 2E-09 6.8E-14 64.9 2.3 63 3-68 110-177 (227)
127 2dyk_A GTP-binding protein; GT 98.8 1E-08 3.6E-13 57.0 4.9 55 8-69 69-123 (161)
128 2hjg_A GTP-binding protein ENG 98.7 1.9E-08 6.5E-13 65.1 5.9 60 6-72 244-304 (436)
129 3iev_A GTP-binding protein ERA 98.7 2.4E-08 8E-13 62.2 5.5 54 8-67 82-135 (308)
130 1g7s_A Translation initiation 98.7 3.1E-08 1.1E-12 66.7 6.3 56 3-68 78-136 (594)
131 3pqc_A Probable GTP-binding pr 98.7 2.5E-08 8.4E-13 57.1 4.9 57 5-68 88-147 (195)
132 1jny_A EF-1-alpha, elongation 98.7 1.2E-08 4.2E-13 66.1 3.8 64 2-68 91-158 (435)
133 3cb4_D GTP-binding protein LEP 98.7 6.5E-08 2.2E-12 65.2 7.0 60 3-69 79-138 (599)
134 2ywe_A GTP-binding protein LEP 98.7 9.6E-08 3.3E-12 64.4 7.7 60 3-69 81-140 (600)
135 3sjy_A Translation initiation 98.7 4.4E-08 1.5E-12 62.9 5.8 62 3-69 83-144 (403)
136 3b1v_A Ferrous iron uptake tra 98.7 3.1E-08 1.1E-12 60.9 4.7 63 3-72 57-125 (272)
137 3h2y_A GTPase family protein; 98.7 2.1E-08 7.2E-13 64.0 4.0 55 5-68 56-110 (368)
138 3gee_A MNME, tRNA modification 98.6 3.8E-08 1.3E-12 64.7 4.7 52 15-71 309-360 (476)
139 3a1s_A Iron(II) transport prot 98.6 4.7E-08 1.6E-12 59.5 4.7 63 3-72 60-128 (258)
140 3p26_A Elongation factor 1 alp 98.6 9.1E-08 3.1E-12 62.7 6.2 62 3-69 119-186 (483)
141 1r5b_A Eukaryotic peptide chai 98.6 1.7E-08 5.9E-13 66.0 2.6 63 3-68 129-195 (467)
142 3iby_A Ferrous iron transport 98.6 1.8E-08 6E-13 61.4 2.5 52 11-71 74-127 (256)
143 1wf3_A GTP-binding protein; GT 98.6 1E-07 3.6E-12 59.3 6.0 57 8-70 76-133 (301)
144 4dcu_A GTP-binding protein ENG 98.6 1.3E-07 4.6E-12 61.4 6.4 61 5-72 263-324 (456)
145 3l2o_B F-box only protein 4; s 98.6 4.1E-08 1.4E-12 61.6 3.6 63 3-68 195-262 (312)
146 3i8s_A Ferrous iron transport 98.5 1.1E-07 3.6E-12 58.3 4.2 45 20-71 85-129 (274)
147 1n0u_A EF-2, elongation factor 98.5 1.8E-07 6.2E-12 65.0 5.6 58 3-67 106-163 (842)
148 3izy_P Translation initiation 98.5 5E-08 1.7E-12 65.1 2.7 59 3-68 60-118 (537)
149 3qq5_A Small GTP-binding prote 98.5 2E-07 7E-12 60.5 5.5 60 3-71 91-157 (423)
150 1zun_B Sulfate adenylate trans 98.5 5.2E-07 1.8E-11 58.4 7.2 60 3-68 112-171 (434)
151 4dhe_A Probable GTP-binding pr 98.5 9.9E-08 3.4E-12 55.9 3.4 61 5-70 99-160 (223)
152 2c78_A Elongation factor TU-A; 98.5 2.6E-07 9E-12 59.2 5.6 59 3-68 83-142 (405)
153 3tr5_A RF-3, peptide chain rel 98.5 6.2E-07 2.1E-11 59.6 7.2 59 3-68 90-148 (528)
154 3ec1_A YQEH GTPase; atnos1, at 98.5 4.8E-08 1.7E-12 62.3 1.9 56 4-68 57-112 (369)
155 3def_A T7I23.11 protein; chlor 98.5 1.5E-07 5.1E-12 57.2 3.9 66 3-70 92-167 (262)
156 1zo1_I IF2, translation initia 98.4 1.8E-07 6.1E-12 62.0 4.2 57 2-68 58-117 (501)
157 2qtf_A Protein HFLX, GTP-bindi 98.4 9.6E-07 3.3E-11 56.3 7.4 59 6-68 246-306 (364)
158 2hjg_A GTP-binding protein ENG 98.4 3.8E-07 1.3E-11 59.0 5.5 56 7-69 71-126 (436)
159 2e87_A Hypothetical protein PH 98.4 3.5E-07 1.2E-11 57.8 4.9 49 20-70 246-296 (357)
160 1d2e_A Elongation factor TU (E 98.4 6.1E-07 2.1E-11 57.5 6.0 59 3-68 74-133 (397)
161 3izq_1 HBS1P, elongation facto 98.4 2.2E-07 7.6E-12 62.7 3.8 65 3-69 253-320 (611)
162 1f60_A Elongation factor EEF1A 98.4 5.2E-07 1.8E-11 58.9 5.3 60 3-68 93-159 (458)
163 2h5e_A Peptide chain release f 98.4 9.1E-07 3.1E-11 58.8 6.4 60 3-69 90-149 (529)
164 1s0u_A EIF-2-gamma, translatio 98.4 1.1E-06 3.9E-11 56.4 6.5 58 3-69 89-150 (408)
165 1dar_A EF-G, elongation factor 98.4 1.6E-06 5.4E-11 59.2 7.2 60 3-69 85-144 (691)
166 3k53_A Ferrous iron transport 98.3 5.8E-07 2E-11 54.7 4.2 62 3-70 58-125 (271)
167 3j2k_7 ERF3, eukaryotic polype 98.3 5.8E-07 2E-11 58.4 4.1 62 3-67 103-168 (439)
168 1mky_A Probable GTP-binding pr 98.3 1.4E-06 4.7E-11 56.5 5.5 52 7-67 70-123 (439)
169 2rdo_7 EF-G, elongation factor 98.3 2.2E-06 7.5E-11 58.7 6.7 59 3-68 90-148 (704)
170 1wb1_A Translation elongation 98.2 2.2E-06 7.6E-11 56.3 5.9 56 3-68 81-139 (482)
171 4dcu_A GTP-binding protein ENG 98.2 1.4E-06 4.6E-11 56.7 4.7 58 5-69 89-146 (456)
172 2xex_A Elongation factor G; GT 98.2 4.7E-06 1.6E-10 56.9 7.2 60 3-69 83-142 (693)
173 1kk1_A EIF2gamma; initiation o 98.2 5.1E-06 1.7E-10 53.3 6.9 57 3-68 91-151 (410)
174 3geh_A MNME, tRNA modification 98.2 2.6E-06 8.9E-11 55.9 5.2 45 20-71 303-347 (462)
175 2elf_A Protein translation elo 98.2 2.9E-06 1E-10 54.2 5.3 56 3-66 68-125 (370)
176 1h65_A Chloroplast outer envel 98.2 2.4E-06 8.1E-11 52.0 4.3 49 20-70 119-170 (270)
177 2aka_B Dynamin-1; fusion prote 98.1 3.9E-06 1.3E-10 51.2 5.2 58 7-70 150-208 (299)
178 1xzp_A Probable tRNA modificat 98.1 7.1E-06 2.4E-10 54.1 6.4 47 13-68 318-364 (482)
179 2qpt_A EH domain-containing pr 98.1 1.5E-06 5.2E-11 58.0 3.0 56 8-69 178-233 (550)
180 3avx_A Elongation factor TS, e 98.1 2.6E-06 9E-11 61.4 4.2 59 3-68 367-426 (1289)
181 3lxx_A GTPase IMAP family memb 98.0 3.2E-06 1.1E-10 50.4 3.3 61 8-72 102-163 (239)
182 2qag_A Septin-2, protein NEDD5 98.0 3.9E-07 1.3E-11 57.9 -0.8 60 6-72 113-192 (361)
183 2j69_A Bacterial dynamin-like 98.0 1.4E-05 4.9E-10 54.6 5.6 55 9-69 191-245 (695)
184 3lxw_A GTPase IMAP family memb 97.9 2.7E-05 9.4E-10 46.9 6.0 48 20-68 105-153 (247)
185 3t34_A Dynamin-related protein 97.9 1.5E-05 5.1E-10 50.3 5.0 57 9-70 163-219 (360)
186 2xtp_A GTPase IMAP family memb 97.9 3.8E-05 1.3E-09 46.1 6.4 51 15-68 102-153 (260)
187 2dy1_A Elongation factor G; tr 97.9 5.1E-05 1.7E-09 51.7 6.9 58 3-67 82-139 (665)
188 1mky_A Probable GTP-binding pr 97.9 4.7E-05 1.6E-09 49.3 6.5 59 6-71 250-309 (439)
189 1jwy_B Dynamin A GTPase domain 97.7 2.6E-05 8.8E-10 48.0 3.6 58 7-70 156-214 (315)
190 3mca_A HBS1, elongation factor 97.7 6E-06 2E-10 55.6 0.1 56 3-68 263-329 (592)
191 1ega_A Protein (GTP-binding pr 97.7 6.8E-05 2.3E-09 46.5 4.6 48 13-68 83-130 (301)
192 1puj_A YLQF, conserved hypothe 97.5 9.6E-05 3.3E-09 45.6 4.1 40 20-68 23-64 (282)
193 2x2e_A Dynamin-1; nitration, h 97.3 0.00046 1.6E-08 43.5 4.9 58 7-69 155-212 (353)
194 1t9h_A YLOQ, probable GTPase E 97.3 0.001 3.5E-08 41.6 6.4 46 20-69 86-132 (307)
195 1pui_A ENGB, probable GTP-bind 97.2 0.00085 2.9E-08 38.6 4.9 55 7-68 94-151 (210)
196 1udx_A The GTP-binding protein 97.1 0.00056 1.9E-08 44.4 4.3 48 20-68 235-283 (416)
197 1wxq_A GTP-binding protein; st 97.1 0.00041 1.4E-08 44.7 3.5 26 8-33 88-114 (397)
198 3t5d_A Septin-7; GTP-binding p 97.0 0.00097 3.3E-08 40.5 4.1 43 21-68 116-158 (274)
199 2qag_C Septin-7; cell cycle, c 96.9 0.0003 1E-08 45.7 1.3 48 20-72 136-185 (418)
200 3cnl_A YLQF, putative uncharac 96.7 0.00059 2E-08 41.6 1.5 40 20-68 21-60 (262)
201 3vqt_A RF-3, peptide chain rel 96.5 0.013 4.3E-07 39.3 7.3 59 3-68 108-166 (548)
202 2rcn_A Probable GTPase ENGC; Y 96.4 0.0089 3E-07 38.2 5.5 45 20-68 130-174 (358)
203 4fn5_A EF-G 1, elongation fact 96.1 0.02 6.8E-07 39.3 6.3 59 3-68 93-151 (709)
204 1yrb_A ATP(GTP)binding protein 96.0 0.0054 1.8E-07 36.5 2.9 45 22-69 139-186 (262)
205 3j25_A Tetracycline resistance 95.7 0.009 3.1E-07 40.6 3.4 59 3-68 75-133 (638)
206 3zvr_A Dynamin-1; hydrolase, D 95.5 0.02 6.8E-07 40.0 4.5 57 7-68 175-231 (772)
207 2qnr_A Septin-2, protein NEDD5 94.9 0.0044 1.5E-07 38.3 -0.1 18 53-70 154-171 (301)
208 1jal_A YCHF protein; nucleotid 94.6 0.18 6.1E-06 32.3 6.8 13 20-32 96-108 (363)
209 2wsm_A Hydrogenase expression/ 94.3 0.028 9.7E-07 32.4 2.5 40 20-68 129-168 (221)
210 3p32_A Probable GTPase RV1496/ 93.8 0.0057 2E-07 38.6 -1.3 40 20-68 192-231 (355)
211 2p67_A LAO/AO transport system 93.4 0.028 9.6E-07 35.2 1.4 40 20-68 169-208 (341)
212 2www_A Methylmalonic aciduria 93.0 0.084 2.9E-06 33.3 3.1 40 20-68 187-226 (349)
213 2dby_A GTP-binding protein; GD 88.3 2.7 9.1E-05 26.8 6.8 13 20-32 99-111 (368)
214 2hf9_A Probable hydrogenase ni 86.4 0.21 7.2E-06 28.8 0.8 13 56-68 166-178 (226)
215 4a9a_A Ribosome-interacting GT 83.4 2 6.8E-05 27.6 4.4 45 20-67 149-195 (376)
216 2qm8_A GTPase/ATPase; G protei 76.0 1.4 4.7E-05 27.6 1.8 39 20-67 168-206 (337)
217 3end_A Light-independent proto 72.0 14 0.00047 22.3 6.8 46 20-66 179-225 (307)
218 4dzz_A Plasmid partitioning pr 69.7 12 0.00041 20.8 5.4 44 21-66 98-142 (206)
219 2ivy_A Hypothetical protein SS 68.4 10 0.00034 19.7 3.9 21 21-41 2-22 (101)
220 2ohf_A Protein OLA1, GTP-bindi 68.0 2.7 9.1E-05 27.2 1.8 25 13-39 111-135 (396)
221 3ro3_B Minsc, peptide of prote 64.7 5.5 0.00019 15.0 1.9 13 36-48 7-19 (22)
222 1zpw_X Hypothetical protein TT 61.4 14 0.00049 18.6 3.8 20 22-41 4-23 (90)
223 3ezx_A MMCP 1, monomethylamine 60.7 19 0.00065 21.1 4.5 43 20-62 143-185 (215)
224 3k9g_A PF-32 protein; ssgcid, 57.7 26 0.00089 20.5 5.9 43 20-65 166-208 (267)
225 2xzm_U Ribosomal protein L7AE 54.5 19 0.00063 19.5 3.5 41 20-67 40-80 (126)
226 3exc_X Uncharacterized protein 54.3 20 0.0007 18.2 3.9 21 21-41 3-23 (91)
227 3gt7_A Sensor protein; structu 50.6 26 0.00089 18.3 4.8 42 20-65 51-92 (154)
228 3rl5_A Metallophosphoesterase 48.6 12 0.00042 23.2 2.4 44 20-66 79-122 (296)
229 3gl9_A Response regulator; bet 47.0 27 0.00092 17.5 4.0 42 20-65 46-87 (122)
230 3nhm_A Response regulator; pro 45.5 29 0.00098 17.4 4.0 43 20-66 47-89 (133)
231 3sop_A Neuronal-specific septi 45.1 36 0.0012 20.4 4.0 41 21-68 112-154 (270)
232 1y80_A Predicted cobalamin bin 45.1 42 0.0014 19.2 4.2 43 20-64 139-181 (210)
233 3cwq_A Para family chromosome 44.3 42 0.0015 19.0 6.0 44 20-67 90-133 (209)
234 2zay_A Response regulator rece 43.1 34 0.0012 17.5 4.6 42 20-65 52-93 (147)
235 2l82_A Designed protein OR32; 42.8 40 0.0014 18.2 4.0 38 20-65 77-114 (162)
236 1bif_A 6-phosphofructo-2-kinas 42.7 47 0.0016 21.5 4.5 34 13-49 115-148 (469)
237 1rtt_A Conserved hypothetical 41.8 29 0.00099 19.3 3.1 44 20-63 72-117 (193)
238 2ph1_A Nucleotide-binding prot 41.4 52 0.0018 19.2 4.8 41 21-66 153-194 (262)
239 3t6k_A Response regulator rece 40.7 37 0.0013 17.3 4.3 43 20-66 48-90 (136)
240 2yvt_A Hypothetical protein AQ 40.4 52 0.0018 18.9 6.3 17 20-36 32-48 (260)
241 3i42_A Response regulator rece 40.4 35 0.0012 16.9 4.9 44 20-67 47-90 (127)
242 3kht_A Response regulator; PSI 39.6 33 0.0011 17.5 3.0 42 20-65 51-92 (144)
243 1wcv_1 SOJ, segregation protei 39.4 56 0.0019 19.0 6.3 46 21-67 134-182 (257)
244 1k68_A Phytochrome response re 38.5 37 0.0013 16.9 3.1 42 20-65 55-96 (140)
245 3grc_A Sensor protein, kinase; 38.3 26 0.0009 17.8 2.4 42 20-65 50-91 (140)
246 3k1y_A Oxidoreductase; structu 37.9 56 0.0019 18.6 4.0 50 9-62 77-126 (191)
247 4ebb_A Dipeptidyl peptidase 2; 37.8 50 0.0017 21.6 4.1 33 30-62 103-135 (472)
248 3ea0_A ATPase, para family; al 37.6 57 0.0019 18.5 6.3 45 21-67 141-185 (245)
249 3heb_A Response regulator rece 37.5 44 0.0015 17.2 3.8 42 20-65 59-100 (152)
250 4b87_A DNA cross-LINK repair 1 37.5 50 0.0017 20.9 3.9 27 21-47 309-335 (367)
251 3jyw_G 60S ribosomal protein L 37.2 32 0.0011 18.3 2.6 41 20-67 41-81 (113)
252 4ehx_A Tetraacyldisaccharide 4 36.7 16 0.00055 22.7 1.5 11 53-63 34-44 (315)
253 2j37_W Signal recognition part 36.6 89 0.0031 20.8 5.1 41 20-68 213-254 (504)
254 3fvw_A Putative NAD(P)H-depend 36.6 58 0.002 18.3 3.9 43 20-62 67-118 (192)
255 3oq2_A Crispr-associated prote 36.4 46 0.0016 17.2 3.4 12 22-33 8-19 (103)
256 3u7r_A NADPH-dependent FMN red 35.6 44 0.0015 19.1 3.2 43 20-62 67-112 (190)
257 2qvg_A Two component response 35.6 46 0.0016 16.8 3.6 41 21-65 60-100 (143)
258 3cnb_A DNA-binding response re 34.1 48 0.0016 16.6 4.4 43 20-66 54-96 (143)
259 2xmo_A LMO2642 protein; phosph 34.1 89 0.003 19.7 5.2 40 20-63 92-135 (443)
260 2vzf_A NADH-dependent FMN redu 34.0 41 0.0014 18.9 2.9 42 20-62 69-110 (197)
261 3bfv_A CAPA1, CAPB2, membrane 34.0 76 0.0026 18.9 4.5 42 21-67 215-257 (271)
262 3n53_A Response regulator rece 33.9 49 0.0017 16.7 3.5 43 20-66 46-88 (140)
263 3sf4_D Protein inscuteable hom 33.6 26 0.00088 15.9 1.6 12 37-48 9-20 (52)
264 2fz5_A Flavodoxin; alpha/beta 33.5 52 0.0018 16.8 3.4 41 20-62 46-88 (137)
265 4hs4_A Chromate reductase; tri 32.3 72 0.0025 18.1 4.4 43 20-62 73-117 (199)
266 2q62_A ARSH; alpha/beta, flavo 32.2 53 0.0018 19.6 3.3 42 21-62 99-144 (247)
267 1uoz_A Putative cellulase; hyd 31.6 79 0.0027 20.0 4.1 39 20-60 89-137 (315)
268 2i0x_A Hypothetical protein PF 31.6 42 0.0014 16.7 2.4 9 24-32 3-11 (85)
269 3cg4_A Response regulator rece 31.5 55 0.0019 16.5 5.0 43 20-66 51-93 (142)
270 2qsj_A DNA-binding response re 31.0 59 0.002 16.7 3.5 40 20-65 50-89 (154)
271 3f6c_A Positive transcription 30.8 55 0.0019 16.3 4.3 41 20-66 46-86 (134)
272 3h1g_A Chemotaxis protein CHEY 30.3 56 0.0019 16.3 4.0 41 21-65 52-92 (129)
273 1xky_A Dihydrodipicolinate syn 30.2 96 0.0033 19.0 4.3 38 20-60 107-144 (301)
274 3lua_A Response regulator rece 29.9 59 0.002 16.4 3.3 42 20-65 50-92 (140)
275 1qkk_A DCTD, C4-dicarboxylate 29.5 64 0.0022 16.6 4.6 40 20-65 47-86 (155)
276 2wkj_A N-acetylneuraminate lya 29.2 94 0.0032 19.0 4.1 39 20-60 106-144 (303)
277 3l6u_A ABC-type sugar transpor 29.1 57 0.002 18.9 3.1 37 20-65 64-100 (293)
278 2lbw_A H/ACA ribonucleoprotein 29.1 29 0.00099 18.4 1.6 41 20-67 36-76 (121)
279 3eul_A Possible nitrate/nitrit 29.0 65 0.0022 16.5 4.4 40 20-65 61-100 (152)
280 1o5k_A DHDPS, dihydrodipicolin 28.7 1E+02 0.0034 18.9 4.2 38 20-60 107-144 (306)
281 3eod_A Protein HNR; response r 28.6 60 0.0021 16.1 4.0 41 20-66 51-91 (130)
282 3hdv_A Response regulator; PSI 28.4 62 0.0021 16.2 3.5 41 21-66 53-93 (136)
283 3eb2_A Putative dihydrodipicol 27.8 98 0.0033 18.9 4.0 39 20-61 99-137 (300)
284 2ojp_A DHDPS, dihydrodipicolin 27.8 1.1E+02 0.0036 18.6 4.1 38 20-60 96-133 (292)
285 2kkm_A Translation machinery-a 27.6 31 0.0011 19.1 1.6 20 24-43 99-118 (144)
286 3m6m_D Sensory/regulatory prot 27.2 70 0.0024 16.4 5.4 44 20-65 58-101 (143)
287 2v9d_A YAGE; dihydrodipicolini 27.2 1.1E+02 0.0039 19.1 4.3 38 20-60 126-163 (343)
288 3gfs_A FMN-dependent NADPH-azo 26.9 37 0.0013 18.5 1.9 40 21-61 64-103 (174)
289 3hdg_A Uncharacterized protein 26.9 67 0.0023 16.0 3.6 40 20-65 51-90 (137)
290 3svl_A Protein YIEF; E. coli C 26.8 92 0.0031 17.6 4.9 50 10-62 65-116 (193)
291 2j48_A Two-component sensor ki 26.7 60 0.002 15.4 4.7 43 20-66 45-87 (119)
292 3m9w_A D-xylose-binding peripl 26.7 49 0.0017 19.5 2.5 37 20-65 58-94 (313)
293 1k66_A Phytochrome response re 26.6 64 0.0022 16.2 2.7 41 21-65 63-103 (149)
294 1mb3_A Cell division response 26.4 64 0.0022 15.7 4.4 42 20-65 45-86 (124)
295 3kjh_A CO dehydrogenase/acetyl 26.3 93 0.0032 17.5 5.8 42 20-65 153-194 (254)
296 2jba_A Phosphate regulon trans 26.3 66 0.0022 15.7 4.2 42 20-65 46-87 (127)
297 3jte_A Response regulator rece 26.2 71 0.0024 16.1 5.0 41 20-66 49-89 (143)
298 3l21_A DHDPS, dihydrodipicolin 26.2 1.2E+02 0.004 18.6 4.1 38 20-60 110-147 (304)
299 1i3c_A Response regulator RCP1 25.7 76 0.0026 16.3 4.1 41 21-65 62-102 (149)
300 5nul_A Flavodoxin; electron tr 25.6 77 0.0026 16.3 3.5 41 20-62 45-87 (138)
301 3k4h_A Putative transcriptiona 25.6 1E+02 0.0035 17.7 3.8 35 20-65 69-103 (292)
302 3huu_A Transcription regulator 25.6 1.1E+02 0.0037 17.9 4.4 35 20-65 83-117 (305)
303 3cg0_A Response regulator rece 25.4 72 0.0025 15.9 4.7 39 20-65 54-93 (140)
304 4e7p_A Response regulator; DNA 25.1 78 0.0027 16.2 4.1 40 20-65 66-105 (150)
305 4es1_A BH0342 protein; ferredo 24.9 80 0.0027 16.3 4.0 13 21-33 4-16 (100)
306 3v7e_A Ribosome-associated pro 24.9 33 0.0011 16.8 1.3 15 53-67 52-66 (82)
307 2ehh_A DHDPS, dihydrodipicolin 24.8 99 0.0034 18.8 3.6 38 20-60 95-132 (294)
308 1w3i_A EDA, 2-keto-3-deoxy glu 24.8 1E+02 0.0035 18.7 3.7 38 20-60 91-129 (293)
309 2yxg_A DHDPS, dihydrodipicolin 24.7 97 0.0033 18.8 3.6 38 20-60 95-132 (289)
310 2vc6_A MOSA, dihydrodipicolina 24.6 98 0.0033 18.8 3.6 38 20-60 95-132 (292)
311 3hxl_A Uncharacterized protein 24.6 1.5E+02 0.0053 19.4 5.4 38 26-65 203-240 (446)
312 2vyc_A Biodegradative arginine 24.5 1.8E+02 0.0063 20.2 5.4 43 21-65 54-96 (755)
313 2qag_B Septin-6, protein NEDD5 24.4 1.3E+02 0.0044 19.6 4.3 16 53-68 175-190 (427)
314 2ark_A Flavodoxin; FMN, struct 24.2 98 0.0034 17.0 4.6 43 20-62 52-96 (188)
315 1ii7_A MRE11 nuclease; RAD50, 23.8 1.3E+02 0.0044 18.3 4.1 42 20-66 40-87 (333)
316 1rli_A Trp repressor binding p 23.8 85 0.0029 17.0 3.0 28 20-47 71-98 (184)
317 1t0i_A YLR011WP; FMN binding p 23.6 1E+02 0.0034 16.9 3.5 40 20-61 84-123 (191)
318 3daq_A DHDPS, dihydrodipicolin 23.6 1.3E+02 0.0045 18.2 4.1 38 20-60 97-134 (292)
319 3cpr_A Dihydrodipicolinate syn 23.5 1.1E+02 0.0037 18.8 3.6 38 20-60 111-148 (304)
320 3hv2_A Response regulator/HD d 23.4 86 0.0029 16.1 4.2 40 20-65 58-97 (153)
321 3hcw_A Maltose operon transcri 23.4 1.2E+02 0.004 17.7 3.8 35 20-65 68-102 (295)
322 3tak_A DHDPS, dihydrodipicolin 23.2 1.1E+02 0.0038 18.5 3.6 38 20-60 96-133 (291)
323 3v7q_A Probable ribosomal prot 22.8 64 0.0022 16.4 2.2 40 20-67 35-74 (101)
324 3m5v_A DHDPS, dihydrodipicolin 22.7 1.1E+02 0.0038 18.6 3.6 38 20-60 103-140 (301)
325 3qze_A DHDPS, dihydrodipicolin 22.6 1.1E+02 0.0038 18.9 3.6 38 20-60 118-155 (314)
326 3b4u_A Dihydrodipicolinate syn 22.5 1.1E+02 0.0039 18.5 3.6 39 20-60 98-139 (294)
327 2d3d_A VTS1 protein; RNA bindi 22.5 15 0.00051 18.9 -0.3 18 30-47 12-29 (88)
328 1ccw_A Protein (glutamate muta 22.5 99 0.0034 16.4 4.0 40 20-62 54-93 (137)
329 3b2n_A Uncharacterized protein 22.4 85 0.0029 15.7 4.2 40 20-65 49-88 (133)
330 1uf3_A Hypothetical protein TT 22.4 1.1E+02 0.0037 16.9 4.6 39 20-62 32-72 (228)
331 2yxb_A Coenzyme B12-dependent 22.4 1.1E+02 0.0037 16.8 4.8 40 20-62 69-108 (161)
332 3snk_A Response regulator CHEY 22.3 85 0.0029 15.7 4.2 40 20-65 59-98 (135)
333 2bog_X Endoglucanase E-2; hydr 22.0 1.2E+02 0.0041 18.9 3.6 39 20-60 65-113 (286)
334 3cz5_A Two-component response 22.0 92 0.0032 15.9 4.3 40 20-65 51-90 (153)
335 3si9_A DHDPS, dihydrodipicolin 21.9 1.2E+02 0.004 18.8 3.6 38 20-60 117-154 (315)
336 3j21_Z 50S ribosomal protein L 21.8 89 0.003 15.7 5.2 41 20-68 31-72 (99)
337 3eqz_A Response regulator; str 21.8 85 0.0029 15.4 4.8 39 21-65 47-85 (135)
338 3flu_A DHDPS, dihydrodipicolin 21.7 1.2E+02 0.0042 18.4 3.6 38 20-60 102-139 (297)
339 2ale_A SNU13, NHP2/L7AE family 21.6 33 0.0011 18.7 1.0 40 21-67 49-88 (134)
340 2i2x_B MTAC, methyltransferase 21.5 1.4E+02 0.0047 17.7 4.0 39 20-62 174-212 (258)
341 4dvc_A Thiol:disulfide interch 21.5 1.1E+02 0.0036 16.4 3.5 24 39-63 136-159 (184)
342 3gbv_A Putative LACI-family tr 21.4 56 0.0019 18.9 2.0 37 20-65 69-105 (304)
343 4a17_F RPL7A, 60S ribosomal pr 21.4 99 0.0034 19.0 3.1 41 20-67 140-180 (255)
344 2rjn_A Response regulator rece 21.3 96 0.0033 15.9 4.6 40 20-65 51-90 (154)
345 1sqs_A Conserved hypothetical 21.2 1.3E+02 0.0044 17.3 4.7 43 20-62 79-124 (242)
346 3dz1_A Dihydrodipicolinate syn 21.2 1.3E+02 0.0045 18.5 3.7 39 20-60 102-140 (313)
347 3cpq_A 50S ribosomal protein L 21.1 51 0.0018 17.0 1.6 39 21-67 38-77 (110)
348 2a5l_A Trp repressor binding p 20.8 1.2E+02 0.004 16.6 3.8 43 20-62 71-116 (200)
349 3c3m_A Response regulator rece 20.8 95 0.0032 15.6 4.7 42 20-65 47-88 (138)
350 3to5_A CHEY homolog; alpha(5)b 20.4 1.1E+02 0.0038 16.2 4.7 42 20-65 57-98 (134)
351 2r91_A 2-keto-3-deoxy-(6-phosp 20.4 1E+02 0.0035 18.6 3.0 38 20-60 90-128 (286)
352 2gkg_A Response regulator homo 20.4 88 0.003 15.1 4.0 41 20-65 49-90 (127)
353 2r8w_A AGR_C_1641P; APC7498, d 20.4 97 0.0033 19.3 3.0 38 20-60 129-166 (332)
354 2nuw_A 2-keto-3-deoxygluconate 20.3 1E+02 0.0036 18.6 3.1 38 20-60 91-129 (288)
355 2rfg_A Dihydrodipicolinate syn 20.3 1E+02 0.0035 18.8 3.1 38 20-60 95-132 (297)
356 3l49_A ABC sugar (ribose) tran 20.3 1.4E+02 0.0046 17.2 5.1 37 20-65 61-97 (291)
357 3jy6_A Transcriptional regulat 20.1 1.4E+02 0.0046 17.1 5.4 34 20-65 63-96 (276)
358 1cp2_A CP2, nitrogenase iron p 20.1 1.4E+02 0.0047 17.2 6.5 45 21-66 141-186 (269)
359 3d0c_A Dihydrodipicolinate syn 20.1 1E+02 0.0034 19.0 3.0 38 20-60 106-143 (314)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.85 E-value=3.1e-21 Score=115.63 Aligned_cols=70 Identities=21% Similarity=0.458 Sum_probs=64.1
Q ss_pred CcccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcccC
Q psy5805 2 ASRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH 74 (75)
Q Consensus 2 ~s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~ 74 (75)
.+|+|+|+++++.|++ +++++++|||+++++||+++..|+..+.... .+++|++|||||+||.++|+|+.
T Consensus 69 taGqe~~~~l~~~~~~--~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~ 138 (216)
T 4dkx_A 69 TAGLERFRSLIPSYIR--DSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSI 138 (216)
T ss_dssp CSCTTTCGGGHHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCH
T ss_pred CCCchhhhhHHHHHhc--cccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccH
Confidence 3689999999999999 6999999999999999999999999988764 47899999999999998888864
No 2
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=1.2e-16 Score=90.39 Aligned_cols=69 Identities=32% Similarity=0.436 Sum_probs=45.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|++.|+.+++.|++ +++++++|||+++++||+.+..|+..+.......++|+++||||+|+.+.+.++
T Consensus 57 ~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 125 (166)
T 3q72_A 57 WEQDGGRWLPGHCMA--MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS 125 (166)
T ss_dssp C-----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSC
T ss_pred CCCccchhhhhhhhh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccC
Confidence 588999999999998 599999999999999999999999988875445689999999999998777654
No 3
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=93.37 Aligned_cols=69 Identities=35% Similarity=0.470 Sum_probs=58.5
Q ss_pred cccccchh-hhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTN-LVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|.. +++.|++ +++++|+|||++++.||+.+..|+.++.......++|+++||||+|+.+.+.++
T Consensus 80 ~g~~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 149 (195)
T 3cbq_A 80 WEQGDAGGWLRDHCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149 (195)
T ss_dssp CCCSGGGHHHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC
T ss_pred CCCccchhhhHHHhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC
Confidence 57777765 8888888 599999999999999999999999988775433579999999999998777664
No 4
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-16 Score=95.50 Aligned_cols=68 Identities=32% Similarity=0.467 Sum_probs=55.8
Q ss_pred cccc-chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 4 RTSC-FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 4 ~~e~-f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
|++. ++.+++.|++ +++++|+|||+++++||+.+..|...+.......++|++|||||+||.+.|+|+
T Consensus 96 g~~~~~~~l~~~~~~--~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~ 164 (211)
T 2g3y_A 96 ENKGENEWLHDHCMQ--VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 164 (211)
T ss_dssp TTTHHHHHHHHCCCC--CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSC
T ss_pred CCcchhhhHHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEe
Confidence 4444 5667778888 699999999999999999999999888764333579999999999998766664
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.67 E-value=1.9e-16 Score=90.91 Aligned_cols=69 Identities=30% Similarity=0.457 Sum_probs=61.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++++|||++++.||+.+..|+..+.......++|+++||||+|+.+.+.++
T Consensus 74 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~ 142 (183)
T 3kkq_A 74 AGQEEFSAMREQYMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT 142 (183)
T ss_dssp CSCGGGCSSHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSC
T ss_pred CCchhhHHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcC
Confidence 578999999999999 599999999999999999999999988765555789999999999998777664
No 6
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=2.7e-16 Score=90.16 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=58.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.+...|++ +++++++|||++++++|+.+..|+.++.......++|+++||||+|+.+.+.++
T Consensus 62 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 130 (181)
T 3t5g_A 62 AGQDEYSIFPQTYSI--DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS 130 (181)
T ss_dssp CCCCTTCCCCGGGTT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC
T ss_pred CCchhhhHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec
Confidence 588999999999998 599999999999999999999999988765444689999999999998777664
No 7
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=92.06 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=60.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|+.++..|++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+.+.+.++
T Consensus 86 ~G~~~~~~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~ 153 (201)
T 2hup_A 86 AGQERFRTITQSYYR--SANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVS 153 (201)
T ss_dssp TTCGGGHHHHHHHHT--TCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSC
T ss_pred CCcHhHHHHHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccC
Confidence 688999999999999 6999999999999999999999999988754 4679999999999998766654
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.66 E-value=3.3e-16 Score=89.92 Aligned_cols=68 Identities=16% Similarity=0.406 Sum_probs=50.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|+.++..+++ +++++++|||++++.||+.+..|+..+.... ..++|+++||||+|+.+.+.++
T Consensus 65 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~ 132 (183)
T 2fu5_C 65 AGQERFRTITTAYYR--GAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVS 132 (183)
T ss_dssp ---------CCTTTT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSC
T ss_pred CCChhhhhhHHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCC
Confidence 578999999999998 6999999999999999999999999988753 4679999999999998776654
No 9
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=4.5e-16 Score=92.23 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=56.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHH-HHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|+.+++.|++ +++++|+|||++++.||+. +..|+..+... .+++|+++||||+|+.+
T Consensus 83 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 83 SGSPYYDNVRPLCYS--DSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGG
T ss_pred CCCHhHHHHHHHHcC--CCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcc
Confidence 689999999999999 6999999999999999999 69999999875 36899999999999975
No 10
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.64 E-value=3.6e-16 Score=88.61 Aligned_cols=69 Identities=35% Similarity=0.472 Sum_probs=53.2
Q ss_pred cccccchh-hhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTN-LVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~-~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|.. +++.+++ +++++++|||+++++||+.+..|+.++.......++|+++||||+|+.+.+.++
T Consensus 59 ~g~~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 128 (169)
T 3q85_A 59 WEQGDAGGWLQDHCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128 (169)
T ss_dssp CCC--------CHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC
T ss_pred CCccccchhhhhhhhc--cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC
Confidence 57788876 7777888 499999999999999999999999998875444589999999999998766654
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=7.3e-16 Score=90.82 Aligned_cols=68 Identities=19% Similarity=0.417 Sum_probs=59.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..|++ +++++|+|||++++.||+.+..|+.++.... ..++|+++||||+|+.+.++++
T Consensus 83 ~G~~~~~~~~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~ 150 (201)
T 2ew1_A 83 AGQERFRSITQSYYR--SANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVS 150 (201)
T ss_dssp CCSGGGHHHHGGGST--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSC
T ss_pred CCcHHHHHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccC
Confidence 578999999999998 6999999999999999999999999988753 4679999999999998666654
No 12
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.63 E-value=5.5e-16 Score=87.43 Aligned_cols=69 Identities=30% Similarity=0.460 Sum_probs=60.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++++|||++++.||+.+..|+..+.......++|+++|+||+|+.+.+.++
T Consensus 59 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 127 (167)
T 1c1y_A 59 AGTEQFTAMRDLYMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG 127 (167)
T ss_dssp CSSCSSTTHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC
T ss_pred CChHHHHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC
Confidence 578999999999998 499999999999999999999999888775445689999999999997766553
No 13
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=87.06 Aligned_cols=69 Identities=30% Similarity=0.398 Sum_probs=52.6
Q ss_pred ccccc--chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSC--FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~--f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|++. +..+...+++ +++++++|||++++.||+.+..|+..+.......++|+++||||+|+.+.++++
T Consensus 60 ~g~~~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~ 130 (175)
T 2nzj_A 60 WEAEKLDKSWSQESCLQ--GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS 130 (175)
T ss_dssp C-------CHHHHHTTT--SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSC
T ss_pred CCCCccchhhhHHhhcc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccC
Confidence 46666 6778888888 599999999999999999999999888775334579999999999998777664
No 14
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=88.83 Aligned_cols=69 Identities=29% Similarity=0.428 Sum_probs=58.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..++..|++ +++++++|||++++++|+.+..|+..+.......++|+++||||+|+...+.++
T Consensus 80 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 148 (201)
T 3oes_A 80 AGQDEYSILPYSFII--GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ 148 (201)
T ss_dssp CCCCTTCCCCGGGTT--TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSC
T ss_pred CCccchHHHHHHHHh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccC
Confidence 578999999999999 699999999999999999999999998875444678999999999998766654
No 15
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.62 E-value=1.2e-15 Score=88.32 Aligned_cols=69 Identities=22% Similarity=0.324 Sum_probs=60.0
Q ss_pred cccccch-hhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFT-NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~-~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+ .+...|++ +++++|+|||++++.||+.+..|+.++.......++|+++|+||+|+.+.++++
T Consensus 77 ~G~~~~~~~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (189)
T 1z06_A 77 AGQERFRKSMVQHYYR--NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP 146 (189)
T ss_dssp CCSHHHHTTTHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC
T ss_pred CCchhhhhhhhHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC
Confidence 5788888 88899998 599999999999999999999999998876445689999999999997766554
No 16
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.62 E-value=2.3e-15 Score=85.00 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=59.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.... .+++|+++||||+|+.+.+.++
T Consensus 63 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~ 130 (170)
T 1r2q_A 63 AGQERYHSLAPMYYR--GAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVD 130 (170)
T ss_dssp CCSGGGGGGHHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSC
T ss_pred CCcHHhhhhhHHhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccC
Confidence 578999999999998 5999999999999999999999999888753 4689999999999997655543
No 17
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=8.2e-16 Score=89.20 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=59.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++||||+|+.+.+.++
T Consensus 80 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 147 (191)
T 3dz8_A 80 AGQERYRTITTAYYR--GAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVP 147 (191)
T ss_dssp HHHHHCHHHHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSC
T ss_pred CChHHHHHHHHHHHc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccC
Confidence 578899999999999 6999999999999999999999999998753 4689999999999997766553
No 18
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.62 E-value=7.1e-16 Score=89.51 Aligned_cols=68 Identities=26% Similarity=0.366 Sum_probs=54.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|+.+ ..|++ +++++++|||+++++||+.+..|+.++..... ..++|+++||||+|+.+.++++
T Consensus 77 ~G~~~~~~~-~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 146 (187)
T 3c5c_A 77 ADLDTPRNC-ERYLN--WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT 146 (187)
T ss_dssp CC---CCCT-HHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC
T ss_pred CCCCcchhH-HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC
Confidence 678889886 56777 59999999999999999999999998876421 2578999999999998766664
No 19
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.62 E-value=1.2e-15 Score=85.84 Aligned_cols=69 Identities=26% Similarity=0.427 Sum_probs=57.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.++++
T Consensus 60 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 128 (168)
T 1u8z_A 60 AGQEDYAAIRDNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128 (168)
T ss_dssp CC---CHHHHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC
T ss_pred CCcchhHHHHHHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC
Confidence 578899999999998 499999999999999999999999998876544589999999999997766553
No 20
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.61 E-value=1.6e-15 Score=87.55 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=55.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|+.+++.+++ +++++++|||++++.||+.+ ..|+..+... .+++|+++||||+|+.+
T Consensus 63 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 63 SGSPYYDNVRPLSYP--DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred CCChhhhhhHHhhcC--CCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhc
Confidence 688999999999998 69999999999999999999 7899888764 36899999999999974
No 21
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.61 E-value=4.8e-15 Score=83.55 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=56.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|+++|+.++..+++ +++++++|||+++++||+.+..|+..+.......++|+++||||+|+.+.
T Consensus 52 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 52 GGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp CCCGGGHHHHHHHTT--TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCChhhHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 688999999999998 69999999999999999999999988876433468999999999999754
No 22
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.61 E-value=4.5e-15 Score=84.83 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=60.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++++|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.++
T Consensus 69 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~ 136 (181)
T 2efe_B 69 AGQERYHSLAPMYYR--GAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVT 136 (181)
T ss_dssp CCSGGGGGGTHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSC
T ss_pred CCChhhhhhhHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCC
Confidence 578999999999998 5999999999999999999999999988753 3689999999999997766653
No 23
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.61 E-value=1.2e-15 Score=86.97 Aligned_cols=69 Identities=26% Similarity=0.474 Sum_probs=59.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..++..|++ +++++++|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.++++
T Consensus 65 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~ 133 (181)
T 2fn4_A 65 AGQEEFGAMREQYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP 133 (181)
T ss_dssp CCTTTTSCCHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC
T ss_pred CCchhhHHHHHHHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC
Confidence 578899999999998 499999999999999999999999888554445689999999999998766653
No 24
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.61 E-value=3.4e-15 Score=86.22 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=57.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
+|+++|+.++..|++ +++++++|||++++++|+.+..|+.++.......++|+++||||+|+.+.+
T Consensus 68 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 68 GGQRKIRPYWRSYFE--NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp SSCGGGHHHHHHHHT--TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred CCCHHHHHHHHHHhC--CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 689999999999998 699999999999999999999998887653334678999999999997654
No 25
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.61 E-value=1.7e-15 Score=87.84 Aligned_cols=68 Identities=24% Similarity=0.448 Sum_probs=59.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.++++
T Consensus 78 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~ 145 (191)
T 2a5j_A 78 AGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVK 145 (191)
T ss_dssp TTGGGTSCCCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSC
T ss_pred CCchhhhhhHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccC
Confidence 688999999999999 6999999999999999999999999988753 4689999999999997666553
No 26
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.61 E-value=2.6e-15 Score=87.91 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=53.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|+.+++.|++ +++++++|||+++++||+.+..|+.++.+.....++|+++||||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 77 GGHIQARRVWKNYLP--AINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp CC----CCGGGGGGG--GCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred CCcHhhHHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 589999999999999 5999999999999999999999998887643346899999999999964
No 27
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.61 E-value=2.8e-15 Score=87.51 Aligned_cols=68 Identities=32% Similarity=0.476 Sum_probs=53.9
Q ss_pred cccc-chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 4 RTSC-FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 4 ~~e~-f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
|++. ++.+++.|++ +++++++|||+++++||+.+..|...+.......++|+++||||+|+...|.++
T Consensus 65 ~~~~~~~~~~~~~~~--~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~ 133 (192)
T 2cjw_A 65 ENKGENEWLHDHCMQ--VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133 (192)
T ss_dssp CC----CTTGGGHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC
T ss_pred cCcchhhhHHHhhcc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccccc
Confidence 3443 5667888888 499999999999999999999998888765334679999999999997666553
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.61 E-value=4.1e-15 Score=84.04 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=59.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..+...+++ +++++++|||++++.+|+.+..|+..+.... .+.+|+++||||+|+.+.+++.
T Consensus 63 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~ 130 (170)
T 1z0j_A 63 AGLERFRALAPMYYR--GSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVM 130 (170)
T ss_dssp CCSGGGGGGTHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSC
T ss_pred CCchhhhcccHhhCc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccC
Confidence 578899999999998 5999999999999999999999999988753 4789999999999997666553
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.60 E-value=5.9e-15 Score=85.34 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=60.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.+...|++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.++
T Consensus 73 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~ 140 (196)
T 3tkl_A 73 AGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVD 140 (196)
T ss_dssp CCSGGGCTTHHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSC
T ss_pred CCcHhhhhhHHHHHh--hCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccC
Confidence 578999999999999 5999999999999999999999999988754 4689999999999998776654
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.60 E-value=2.7e-15 Score=86.23 Aligned_cols=69 Identities=22% Similarity=0.432 Sum_probs=60.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.+...+++ +++++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.++
T Consensus 78 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 146 (195)
T 3bc1_A 78 AGLERFRSLTTAFFR--DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK 146 (195)
T ss_dssp CCSGGGHHHHHHTTT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC
T ss_pred CCcHHHHHHHHHHHc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC
Confidence 578999999999998 699999999999999999999999998876444689999999999997765553
No 31
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=87.59 Aligned_cols=69 Identities=26% Similarity=0.427 Sum_probs=60.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..++..|++ +++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.++++
T Consensus 70 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 138 (206)
T 2bov_A 70 AGQEDYAAIRDNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 138 (206)
T ss_dssp CCTTCCHHHHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC
T ss_pred CChhhhHHHHHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc
Confidence 688999999999998 499999999999999999999999998876544589999999999998766553
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.60 E-value=4.3e-15 Score=86.62 Aligned_cols=68 Identities=19% Similarity=0.393 Sum_probs=59.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+.+.+.++
T Consensus 65 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 132 (203)
T 1zbd_A 65 AGLERYRTITTAYYR--GAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVS 132 (203)
T ss_dssp CCSGGGHHHHHTTGG--GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSC
T ss_pred CCchhhcchHHHhhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccC
Confidence 578999999999998 5999999999999999999999999988753 4678999999999998766553
No 33
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.60 E-value=2.3e-15 Score=84.64 Aligned_cols=69 Identities=29% Similarity=0.504 Sum_probs=59.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|..++.......++|+++|+||+|+...++++
T Consensus 59 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 127 (167)
T 1kao_A 59 AGTEQFASMRDLYIK--NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS 127 (167)
T ss_dssp CCTTCCHHHHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC
T ss_pred CCchhhHHHHHHHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCC
Confidence 578999999999998 499999999999999999999999888775444689999999999997666553
No 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.60 E-value=4.4e-15 Score=86.88 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=60.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+.+.+.++
T Consensus 65 ~G~~~~~~~~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 132 (206)
T 2bcg_Y 65 AGQERFRTITSSYYR--GSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVE 132 (206)
T ss_dssp TTTTTTTCCCGGGGT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSC
T ss_pred CChHHHHHHHHHhcc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccC
Confidence 578999999999998 6999999999999999999999999988754 4679999999999998766653
No 35
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.60 E-value=2.5e-15 Score=87.49 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=55.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCCeEEEEeeCCCCcC-CCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLER-RRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~-~r~v~ 73 (75)
+|+++|..++..|++ +++++|+|||++++.||+.+..|+..+..... ..++|+++||||+|+.+ .+.++
T Consensus 81 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~ 152 (208)
T 2yc2_C 81 AGSDLYKEQISQYWN--GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR 152 (208)
T ss_dssp TTTHHHHHHHSTTCC--CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC
T ss_pred CCcHHHHHHHHHHHh--hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC
Confidence 688899999999998 69999999999999999999999999987542 15899999999999987 66654
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=87.82 Aligned_cols=68 Identities=21% Similarity=0.407 Sum_probs=59.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+.+.++++
T Consensus 83 ~G~~~~~~~~~~~~~--~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~ 150 (192)
T 2il1_A 83 AGQERFNSITSAYYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREIT 150 (192)
T ss_dssp CCSGGGHHHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSC
T ss_pred CCcHHHHHHHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccC
Confidence 578999999999998 5999999999999999999999998887753 4679999999999998766654
No 37
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=4e-15 Score=86.45 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=59.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++
T Consensus 80 ~G~~~~~~~~~~~~~--~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~ 147 (192)
T 2fg5_A 80 AGQERFHSLAPMYYR--GSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVP 147 (192)
T ss_dssp CCSGGGGGGTHHHHT--TCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSC
T ss_pred CCchhhHhhhHHhhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccC
Confidence 578999999999999 5999999999999999999999999988753 4679999999999997655553
No 38
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.60 E-value=5.3e-15 Score=84.29 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=59.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|++.|..+...+++ +++++++|||++++.+|+.+..|+..+... .+++|+++|+||+|+.+.+.+.
T Consensus 66 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~ 132 (181)
T 3tw8_B 66 AGQERFRTITSTYYR--GTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVE 132 (181)
T ss_dssp TTGGGCSSCCGGGGT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSC
T ss_pred CCchhhhhhHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccC
Confidence 578899999999998 699999999999999999999999998774 4689999999999997766543
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.60 E-value=4.8e-15 Score=85.12 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=59.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.++
T Consensus 67 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~ 134 (186)
T 2bme_A 67 AGQERFRSVTRSYYR--GAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVT 134 (186)
T ss_dssp CCSGGGHHHHHTTST--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSC
T ss_pred CCcHHHHHHHHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccC
Confidence 578999999999998 6999999999999999999999998887753 3689999999999997666553
No 40
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.60 E-value=3.3e-15 Score=86.72 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=56.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|+++|..++..|++ +++++++|||++++.||+.+ ..|...+... .+++|+++||||+|+.+.
T Consensus 79 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 79 AGQEEYDRLRPLSYA--DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCT
T ss_pred CCcHHHHHHhHhhcc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence 588999999999999 69999999999999999998 7898888764 478999999999999753
No 41
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.59 E-value=6.2e-15 Score=85.78 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=56.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|+.+++.|++ +++++++|||+++++||+.+..|+.++.......++|+++||||+|+..
T Consensus 75 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 75 GGHIQARRLWKDYFP--EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CCSGGGTTSGGGGCT--TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred CCCHHHHHHHHHHHh--cCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 688999999999998 6999999999999999999999998887643346799999999999975
No 42
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.59 E-value=1.9e-15 Score=97.61 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=59.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
+||++|+++++.||+ +++++|+|||+++ .++|+.+..|+..+.+.....++|++|||||+||.+++
T Consensus 225 aGQe~~r~~w~~yf~--~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k 300 (402)
T 1azs_C 225 GGQRDERRKWIQCFN--DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK 300 (402)
T ss_dssp CCSGGGGGGGGGGTT--TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHH
T ss_pred chhhhhhhhhHhhcc--CCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhh
Confidence 799999999999999 7999999999999 89999999999998875445789999999999996544
No 43
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.59 E-value=4.6e-15 Score=84.91 Aligned_cols=69 Identities=26% Similarity=0.427 Sum_probs=60.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++++|||++++.+|+.+..|+.++.......++|+++|+||+|+.+.++++
T Consensus 74 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~ 142 (187)
T 2a9k_A 74 AGQEDYAAIRDNYFR--SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 142 (187)
T ss_dssp CCTTCCHHHHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC
T ss_pred CCCcccHHHHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC
Confidence 578899999999998 499999999999999999999999998876544589999999999997766543
No 44
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.2e-15 Score=89.47 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=57.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++|+|||++++.+|+.+..|+.++.... ..++|+++|+||+|+...++++
T Consensus 70 ~G~~~~~~~~~~~~~--~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~ 137 (223)
T 3cpj_B 70 AGQERYRAITSAYYR--GAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVP 137 (223)
T ss_dssp TTTTTTTCCCGGGTT--TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSC
T ss_pred CCccchhhhHHHHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccC
Confidence 578999999999999 6999999999999999999999999988753 4678999999999997766654
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.59 E-value=5.1e-15 Score=84.25 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=59.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..+...+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++
T Consensus 72 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~ 139 (179)
T 1z0f_A 72 AGQERFRAVTRSYYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVT 139 (179)
T ss_dssp TTGGGTCHHHHHHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSC
T ss_pred CCChHhhhhHHHHhc--cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccC
Confidence 578999999999998 5999999999999999999999999888754 3689999999999997666553
No 46
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=4e-15 Score=84.95 Aligned_cols=68 Identities=18% Similarity=0.387 Sum_probs=52.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.++
T Consensus 68 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 135 (180)
T 2g6b_A 68 AGQERFRSVTHAYYR--DAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVK 135 (180)
T ss_dssp CCC--------CCGG--GCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSC
T ss_pred CCcHHHHHHHHHHcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccC
Confidence 578899999999998 5999999999999999999999999988754 3689999999999998766554
No 47
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.59 E-value=3.8e-15 Score=87.87 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=55.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|+.++..+++ +++++|+|||++++.||+.+ ..|+..+... .+++|+++||||+|+..
T Consensus 84 ~G~~~~~~~~~~~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 84 SGSPYYDNVRPLSYP--DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred CCcHhhhHHHHhhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhcc
Confidence 588999999999998 69999999999999999999 7899888774 36899999999999974
No 48
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.59 E-value=5e-15 Score=85.67 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=59.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++
T Consensus 79 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 146 (189)
T 2gf9_A 79 AGQERYRTITTAYYR--GAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVP 146 (189)
T ss_dssp CSCCSSCCSGGGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSC
T ss_pred CCcHHHhhhHHHhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCC
Confidence 578999999999998 5999999999999999999999999988753 4689999999999997766553
No 49
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=8.9e-15 Score=82.52 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=57.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...
T Consensus 60 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 60 AGQERFASLAPXYYR--NAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp CCSGGGGGGHHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGS
T ss_pred CCChhhhhhhhhhhc--cCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccc
Confidence 578999999999998 5999999999999999999999999888753 468999999999999654
No 50
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.58 E-value=2.5e-15 Score=87.19 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=52.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc--CCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE--RRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~--~~r~v~ 73 (75)
+|+++|+ |++ +++++++|||++++.||+.+..|+.++.......++|+++||||+|+. ..+.++
T Consensus 75 ~G~~~~~-----~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~ 140 (184)
T 3ihw_A 75 GGPPELQ-----FAA--WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID 140 (184)
T ss_dssp SSSCCHH-----HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSC
T ss_pred CCChhhh-----eec--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccC
Confidence 5677776 666 499999999999999999999999999875434679999999999994 445553
No 51
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.58 E-value=3.4e-15 Score=85.11 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=57.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..++..|++ +++++++|||++++.||+.+..|+..+..... ....|+++||||+|+.+.+.++
T Consensus 64 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~ 134 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIY--GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK 134 (178)
T ss_dssp TTCCTTCTTHHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC
T ss_pred CCCccccchhhHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC
Confidence 578999999999998 69999999999999999999999988876421 1334489999999998766554
No 52
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=5.5e-15 Score=85.69 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=56.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|+++|+.++..|++ +++++++|||+++++||+.+. .|+..+... .+++|+++||||+|+...
T Consensus 74 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 74 AGQEDYDRLRPLSYP--MTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp CCSSSSTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred CCCcchhHHHHHhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 688999999999998 699999999999999999997 899888874 358999999999999753
No 53
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=87.95 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=54.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..|++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.++
T Consensus 90 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~ 157 (199)
T 3l0i_B 90 AGQERFRTITSSYYR--GAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVD 157 (199)
T ss_dssp TTCTTCCCCSCC--C--CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCC
T ss_pred CCcHhHHHHHHHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCC
Confidence 578899999999998 6999999999999999999999999987643 3589999999999998776654
No 54
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.58 E-value=2.6e-15 Score=85.00 Aligned_cols=68 Identities=25% Similarity=0.417 Sum_probs=52.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..+...+++ +++++++|||++++.||+.+..|+..+.... ..++|+++|+||+|+.+.+.++
T Consensus 63 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~ 130 (170)
T 1z08_A 63 AGQERFHALGPIYYR--DSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVS 130 (170)
T ss_dssp CCC-------CCSST--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSC
T ss_pred CCcHhhhhhHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccC
Confidence 578899999999988 6999999999999999999999998887653 3578999999999997766554
No 55
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.57 E-value=1.1e-14 Score=83.85 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=57.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|+++|+.++..+++ ++|++++|||+++++||+.+..|+.++.......++|+++|+||+|+.+.+
T Consensus 70 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 70 GGQKSLRSYWRNYFE--STDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp CCSHHHHTTGGGGCT--TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CCCHhHHHHHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 588899999999998 699999999999999999999998888764334679999999999997643
No 56
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.57 E-value=1.8e-15 Score=96.34 Aligned_cols=65 Identities=6% Similarity=0.162 Sum_probs=57.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|||+|+++++.||+ +++++|+|||++ +.++|+++..|+..+.+.....++|++|||||+||.++
T Consensus 191 aGQe~~r~~~~~y~~--~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ 265 (354)
T 2xtz_A 191 GGQRNERRKWIHLFE--GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK 265 (354)
T ss_dssp CCSTTGGGGTGGGCT--TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred CCchhhhHHHHHHhC--CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhh
Confidence 799999999999999 799999999999 88999999999988876543468999999999999643
No 57
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.57 E-value=6.7e-15 Score=83.74 Aligned_cols=68 Identities=24% Similarity=0.510 Sum_probs=59.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..+...+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.++++
T Consensus 71 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~ 138 (179)
T 2y8e_A 71 AGQERFRSLIPSYIR--DSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVS 138 (179)
T ss_dssp CCSGGGGGGSHHHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSC
T ss_pred CCcHHHHHHHHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCC
Confidence 578999999999998 6999999999999999999999999887754 3679999999999997666553
No 58
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.57 E-value=1.3e-14 Score=84.47 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=52.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|+++|+.++..+++ +++++++|||++++++|+.+..|+..+.......++|+++||||+|+.+.
T Consensus 81 ~G~~~~~~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 81 GGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp C-----CTTHHHHHH--TCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 688999999999998 69999999999999999999999988775433468999999999999754
No 59
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.57 E-value=7.5e-15 Score=84.67 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=55.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC------ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.+++.|++ +++++|+|||++ +.++|..+..|+.++.. ...++|+++||||+|+.+.
T Consensus 82 ~G~~~~~~~~~~~~~--~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 82 PGQVFYNASRKLILR--GVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp CSCCSCSHHHHHHTT--TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTTC
T ss_pred CChHHHHHHHHHHHh--cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhcccc
Confidence 689999999999999 699999999999 67899999999888853 3578999999999999653
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.57 E-value=6.7e-15 Score=85.28 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=56.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC-------CCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI-------GEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..|++ +++++|+|||+++++||+.+..|+..+...... .++|+++||||+|+...
T Consensus 71 ~G~~~~~~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 71 GGAKKFRGLWETYYD--NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp CCSGGGGGGGGGGCT--TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHHh--cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 688999999999998 699999999999999999999998887653111 37899999999999765
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=86.18 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=59.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|..++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+...+.++
T Consensus 82 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~ 149 (200)
T 2o52_A 82 AGQERFRSVTRSYYR--GAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVT 149 (200)
T ss_dssp TTHHHHSCCCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSC
T ss_pred CCcHhHHHHHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccC
Confidence 578889999999998 6999999999999999999999999887754 3689999999999997666553
No 62
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.57 E-value=9.7e-16 Score=93.23 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=55.6
Q ss_pred cccccchhhhhhhhhc-------------------cCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy5805 3 SRTSCFTNLVVNFVQT-------------------YHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVA 61 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~-------------------~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ilvg 61 (75)
+|+|+|+++++.|++. .+++++|+|||++++ .||+.+..|+.++.......++|+++||
T Consensus 126 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 205 (255)
T 3c5h_A 126 AAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVL 205 (255)
T ss_dssp HTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 5788999999998870 039999999999999 9999999999988764223679999999
Q ss_pred eCCCCcCCCcc
Q psy5805 62 NKADLERRRQV 72 (75)
Q Consensus 62 nK~Dl~~~r~v 72 (75)
||+||.+.+.+
T Consensus 206 NK~Dl~~~~~v 216 (255)
T 3c5h_A 206 TKCDEGVERYI 216 (255)
T ss_dssp ECGGGBCHHHH
T ss_pred EcccccccHHH
Confidence 99999765543
No 63
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.57 E-value=2.8e-15 Score=88.04 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=56.0
Q ss_pred CcccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 2 ASRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 2 ~s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
.+|+++|+.+++.|++ +++++|+|||++++.+|+.+. .|+..+... .+++|+++||||+|+.+.+.
T Consensus 64 t~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 64 TAGQEDYSRLRPLSYR--GADIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp CCCCCCCCC--CGGGT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH
T ss_pred CCCcHHHHHHHHhhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCcc
Confidence 3688999999999998 699999999999999999996 899988874 35899999999999976554
No 64
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.56 E-value=2.4e-15 Score=95.10 Aligned_cols=64 Identities=6% Similarity=0.035 Sum_probs=49.1
Q ss_pred Ccccccchh---hhhhhhhccCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 2 ASRTSCFTN---LVVNFVQTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 2 ~s~~e~f~~---~~~~~~~~~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.+|||+|+. +++.||+ +++++|+|||++++ +++..+..|+.++... .+++|++++|||+||..+
T Consensus 53 TAGQErf~~~~l~~~~yyr--~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 53 LPGQLNYFEPSYDSERLFK--SVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCSCSSSCCCSHHHHHHHT--TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCS
T ss_pred CCCchhccchhhhhhhhcc--CCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCch
Confidence 369999975 5789999 79999999999998 3333444445555442 478999999999999754
No 65
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.7e-14 Score=83.31 Aligned_cols=64 Identities=11% Similarity=0.267 Sum_probs=53.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|+.++..|++ ++|++++|||+++++||+.+..|+.++.......++|+++|+||+|+.+
T Consensus 68 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 68 GGQESLRSSWNTYYT--NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CC----CGGGHHHHT--TCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred CCCHhHHHHHHHHhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 688999999999998 6999999999999999999999998887643346799999999999965
No 66
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.56 E-value=2.7e-15 Score=88.39 Aligned_cols=69 Identities=22% Similarity=0.473 Sum_probs=58.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++
T Consensus 92 ~G~~~~~~~~~~~~~--~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~ 160 (217)
T 2f7s_A 92 AGQERFRSLTTAFFR--DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160 (217)
T ss_dssp ESHHHHHHHHHHHHT--TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC
T ss_pred CCcHhHHhHHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC
Confidence 578889999999998 599999999999999999999998887654333679999999999997766553
No 67
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.56 E-value=2.1e-14 Score=81.31 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..|++ +++++++|||++++.||..+..|+..+.......++|+++|+||+|+.+.
T Consensus 59 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 59 GGLTSIRPYWRCYYS--NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp CCCGGGGGGGGGGCT--TCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCChhhhHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 588999999999998 69999999999999999999999888765433368999999999999765
No 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.56 E-value=7.6e-15 Score=85.48 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=55.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|+.++..|++ +++++++|||++++.+|+.+. .|+..+... .+++|+++||||+|+..
T Consensus 76 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 76 AGQDEFDKLRPLCYT--NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLRE 138 (201)
T ss_dssp CCSTTCSSSGGGGGT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGG
T ss_pred CCCHHHHHHhHhhcC--CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhh
Confidence 688999999999988 699999999999999999996 799888874 35899999999999975
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.56 E-value=4.6e-15 Score=84.83 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=56.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
+|+++|+.++..+++ +++++++|||++++.||+.+. .|+..+... .+++|+++||||+|+.+.+.
T Consensus 64 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 64 AGQEDYNRLRPLSYR--GADVFILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp CC-CTTTTTGGGGGT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH
T ss_pred CCChhhhhhHHhhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcc
Confidence 688999999999998 699999999999999999997 799888874 35899999999999976554
No 70
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.56 E-value=2.5e-14 Score=82.27 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..|++ ++|++++|||+++++||+.+..|+..+.......++|+++|+||+|+.+.
T Consensus 73 ~G~~~~~~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 73 GGQESLRSSWNTYYT--NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp SSSGGGTCGGGGGGT--TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 588999999999998 69999999999999999999999888775432467999999999999653
No 71
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=6.6e-15 Score=85.66 Aligned_cols=68 Identities=29% Similarity=0.383 Sum_probs=57.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|++. ..++..+++ +++++++|||+++++||+.+..|+..+.......++|+++||||+|+.+.++++
T Consensus 84 ~G~~~-~~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~ 151 (196)
T 2atv_A 84 AGQED-TIQREGHMR--WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151 (196)
T ss_dssp CCCCC-CHHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSC
T ss_pred CCCCc-ccchhhhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccC
Confidence 46666 777888888 499999999999999999999999988876545689999999999998766654
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.56 E-value=8.3e-15 Score=82.62 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=58.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|..+...+++ +++++++|||++++.||+.+..|+..+.... .+.|+++|+||+|+.+.+++
T Consensus 62 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~ 127 (168)
T 1z2a_A 62 AGQEEFDAITKAYYR--GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCI 127 (168)
T ss_dssp TTGGGTTCCCHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSS
T ss_pred CCcHhHHHHHHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCccccc
Confidence 578899999999998 5999999999999999999999999887754 67899999999999766554
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.55 E-value=1.7e-14 Score=85.36 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=57.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|+++|..++..|++ +++++++|||++++.||+.+..|+..+... .+++|+++||||+|+.+.+
T Consensus 72 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 72 AGQEKFGGLRDGYYI--QAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp CSGGGTSCCCHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCS
T ss_pred CChHHHhHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCcccccc
Confidence 578999999999999 699999999999999999999999999875 3689999999999997543
No 74
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.55 E-value=1.7e-15 Score=96.07 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=58.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|||+|++++..||+ +++++|+|||++ +.++|.....|+..+.+.....++|++|+|||+||.++
T Consensus 169 aGQe~~R~~w~~yy~--~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 169 GGQRSERKXWVSFFS--DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp CSCHHHHHHHHTTSC--SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred CCcccccccHHHHhc--cCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence 799999999999999 799999999999 78999999999988876544578999999999999653
No 75
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=83.24 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=58.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|+++|+.++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...+.+
T Consensus 82 ~G~~~~~~~~~~~~~--~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~ 148 (193)
T 2oil_A 82 AGLERYRAITSAYYR--GAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREV 148 (193)
T ss_dssp SCCCTTCTTHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCS
T ss_pred CCchhhhhhhHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCccccccc
Confidence 578899999999998 6999999999999999999999999887643 367999999999999765554
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2.7e-14 Score=82.38 Aligned_cols=63 Identities=27% Similarity=0.358 Sum_probs=56.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.|+++|..++..+++ +++++|+|||++++.+|+.+..|+.++.......++|+++|+||+|+.
T Consensus 72 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 72 AGQERFRTLTPSYYR--GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE 134 (195)
T ss_dssp CSSGGGCCSHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred CCchhhhhhhHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence 578999999999998 599999999999999999999999998765434679999999999995
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.55 E-value=2.2e-14 Score=83.06 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=56.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|..++..|++ +++++++|||++++++|+.+..|+..+.......++|+++|+||+|+...
T Consensus 75 ~G~~~~~~~~~~~~~--~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 75 GGQPRFRSMWERYCR--GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp CCSHHHHTTHHHHHT--TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHHc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 578999999999998 69999999999999999999999888765432467999999999999753
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.55 E-value=1.2e-14 Score=85.64 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=56.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|++.|..+...+++ +++++|+|||++++.||+.+..|+..+.... ..++|+++||||+|+.+.+.+.
T Consensus 69 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~ 136 (218)
T 4djt_A 69 AGQEKKAVLKDVYYI--GASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKIS 136 (218)
T ss_dssp CSGGGTSCCCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CC
T ss_pred CCchhhchHHHHHhh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccC
Confidence 578899999999998 6999999999999999999999999988764 3568999999999998765553
No 79
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.55 E-value=3e-14 Score=81.11 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=57.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|+++|+.++..+++ +++++++|||++++.+|+.+..|+.++..... ..++|+++|+||+|+. .+++
T Consensus 64 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~ 133 (177)
T 1wms_A 64 AGQERFRSLRTPFYR--GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQV 133 (177)
T ss_dssp CCCGGGHHHHGGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSS
T ss_pred CCchhhhhhHHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-cccc
Confidence 578999999999998 59999999999999999999999998876532 2678999999999997 3443
No 80
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.54 E-value=1.6e-14 Score=81.55 Aligned_cols=62 Identities=23% Similarity=0.450 Sum_probs=55.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 60 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 60 AGQERFRTITTAYYR--GAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME 121 (170)
T ss_dssp TTGGGTSCCCHHHHT--TEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT
T ss_pred CCChhhhhhHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCC
Confidence 578899999999998 5999999999999999999999999888753 3678999999999994
No 81
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.54 E-value=6.1e-14 Score=81.10 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCC--CCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--GEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..+++ +++++++|||++++.||+.+..|+..+...... .++|+++|+||+|+.+.
T Consensus 75 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 75 SGQGRYRNLWEHYYK--EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp CCSTTTGGGGGGGGG--GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred CCCHHHHHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 578999999999998 599999999999999999999999888764322 57899999999999754
No 82
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.54 E-value=4.1e-14 Score=81.17 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=55.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|++.|..++..|++ +++++++|||++++.+|+.+..|...+.......++|+++|+||+|+..
T Consensus 60 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 60 AGQEEYSAMRDQYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp CCC---CTTHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred CCcHHHHHHHHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 578999999999999 4999999999999999999999999988765557899999999999964
No 83
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=2.3e-15 Score=87.02 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=56.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|+++|+.+++.|++ +++++++|||++++ .+|+.+..|+.++... .+++|+++||||+|+.+.+.+
T Consensus 64 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 64 AGREEFYSTHPHFMT--QRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp CSHHHHHTTSHHHHH--HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHH
T ss_pred CCCHHHHHhhHHHcc--CCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhh
Confidence 578899999999998 59999999999997 6899999999988764 357899999999999765543
No 84
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=84.82 Aligned_cols=62 Identities=21% Similarity=0.407 Sum_probs=53.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.|+++|..++..+++ +++++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 85 ~G~~~~~~~~~~~~~--~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 85 AGQERFRSIAKSYFR--KADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIR 146 (199)
T ss_dssp TTCTTCHHHHHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGH
T ss_pred CCCcchhhhHHHHHh--hCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc
Confidence 578999999999998 4999999999999999999999999887653 3578999999999995
No 85
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.53 E-value=1.6e-14 Score=82.37 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=46.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~ 67 (75)
.|+++|+.+...+++ +++++++|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.
T Consensus 66 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 131 (182)
T 1ky3_A 66 AGQERFQSLGVAFYR--GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE 131 (182)
T ss_dssp C----------CCST--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred CCChHhhhhhHHHhh--cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence 578899999999988 69999999999999999999999988876532 2678999999999994
No 86
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.53 E-value=3.1e-14 Score=81.35 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=46.7
Q ss_pred hhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC--CCCCeEEEEeeCCCCc--CCCccc
Q psy5805 13 VNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLE--RRRQVT 73 (75)
Q Consensus 13 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~--~~r~v~ 73 (75)
..|++ +++++++|||+++++||+.+..|+..+..... .+++|+++||||+|+. ..+.++
T Consensus 67 ~~~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~ 129 (178)
T 2iwr_A 67 AKFSG--WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 129 (178)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSC
T ss_pred hHHHH--hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCC
Confidence 45677 59999999999999999999998766655422 3578999999999993 445553
No 87
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.53 E-value=3.1e-14 Score=83.24 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=55.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|..++..+++ +++++++|||++++++|+.+ ..|...+... .+++|+++|+||+|+...
T Consensus 81 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 81 AGQEDYDRLRPLSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred CCchhHHHHHHHhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence 578999999999998 69999999999999999999 7898888764 368999999999999754
No 88
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.53 E-value=3.2e-14 Score=82.16 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..+++ ++|++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.
T Consensus 74 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 74 GGQTGVRPYWRCYFS--DTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CCSSSSCCCCSSSST--TCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHhh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 578899999999888 69999999999999999999999888766433468999999999999754
No 89
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.52 E-value=6.3e-15 Score=91.73 Aligned_cols=61 Identities=20% Similarity=0.141 Sum_probs=54.1
Q ss_pred cccchhhhhhhhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 5 TSCFTNLVVNFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
||+|+++++.|++ ++|++|+|||++++. +|+.+..|+.++.. .++|+++||||+||.+.++
T Consensus 71 qer~~~l~~~~~~--~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~ 132 (301)
T 1u0l_A 71 LHRKNLLTKPHVA--NVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDD 132 (301)
T ss_dssp CCCSCEETTTTEE--SCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHH
T ss_pred ccccceeeccccc--cCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchh
Confidence 7899999999999 799999999999998 79999999988764 4689999999999976544
No 90
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.52 E-value=1.4e-14 Score=92.12 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+||++|++++..||+ +++++|+|||+++ .++|.....|+..+.+.....++|++|+|||+||..
T Consensus 201 ~GQe~~r~~w~~yf~--~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 274 (353)
T 1cip_A 201 GGQRSERKKWIHCFE--GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE 274 (353)
T ss_dssp CCSGGGGGGGGGGCT--TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred CCchhhhHHHHHHHh--cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence 799999999999999 7999999999999 578999999998887654346899999999999953
No 91
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.52 E-value=5.5e-14 Score=78.73 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=56.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+..
T Consensus 59 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 59 AGQEEYSAMRDQYMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp CCCSSCCHHHHHHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred CCchhhhHHHHHhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 578899999999998 4999999999999999999999999888765445899999999999975
No 92
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.51 E-value=5.3e-15 Score=93.42 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC----------ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
+|||+|++++..||+ +++++|+|||++ +.++|.....|+..+.+.....++|++|+|||+||.+++
T Consensus 175 gGQe~~R~~w~~yf~--~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 175 GGQRSERRKWIHCFE--NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp CCSHHHHTTGGGGCS--SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred CCchhHHHHHHHHhC--CCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence 799999999999999 799999999665 778899888888888765444789999999999996543
No 93
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.51 E-value=1.9e-14 Score=85.01 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=43.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
+|+++|..++..|++ +++++++|||++++.||+.+. .|+..+... .+++|+++||||+|+...+
T Consensus 90 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 90 AGQDDYDRLRPLFYP--DASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp -----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCH
T ss_pred CCchhhhHHHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccc
Confidence 588999999999998 699999999999999999996 799888764 3679999999999997653
No 94
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=3.4e-14 Score=80.22 Aligned_cols=69 Identities=20% Similarity=0.398 Sum_probs=57.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|+++|..+...+++ +++++++|||++++.+|+.+..|+..+.+.. ..+++|+++|+||+|+...+++.
T Consensus 59 ~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~ 128 (172)
T 2erx_A 59 TGSHQFPAMQRLSIS--KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQ 128 (172)
T ss_dssp CSCSSCHHHHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSC
T ss_pred CCchhhHHHHHHhcc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccC
Confidence 578899999999998 4999999999999999999999988877643 23578999999999997666553
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.51 E-value=5.9e-14 Score=81.78 Aligned_cols=62 Identities=6% Similarity=0.044 Sum_probs=52.8
Q ss_pred cccccchhhh---hhhhhccCCcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLV---VNFVQTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~---~~~~~~~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++|..+. ..|++ +++++|+|||++++ +++..+..|+.++... .+++|+++||||+||..
T Consensus 77 ~G~~~~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 77 PGQMDFFDPTFDYEMIFR--GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp CSSCCTTCTTCCHHHHHH--TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSC
T ss_pred CCCHHHHhhhhhcccccc--cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCc
Confidence 6899998887 88888 69999999999998 7888888888877542 46899999999999753
No 96
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=6.6e-14 Score=81.90 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=55.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.|++.|..++..+++ +++++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.
T Consensus 77 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 77 AGQERFRTITTAYYR--GAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME 138 (213)
T ss_dssp TTGGGGTCCCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCS
T ss_pred CCcHHHHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc
Confidence 578899999999998 5999999999999999999999999888753 3579999999999994
No 97
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.51 E-value=4.4e-14 Score=80.84 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=55.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..+++ +++++++|||++++.||+.+. .|+..+... .+++|+++||||+|+...
T Consensus 61 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 61 AGQEDYDRLRPLSYP--QTDVSLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTC
T ss_pred CCCHhHHHHHHHhcc--CCcEEEEEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEccccccc
Confidence 688999999999998 699999999999999999997 799888874 358999999999999653
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.51 E-value=7e-14 Score=80.66 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=46.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|..++..+++ +++++++|||+++..+|+.+..|+..+.......++|+++|+||+|+..
T Consensus 77 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 77 AGQEEYSAMRDQYMR--TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp CC-----------CT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred CChHHHHHHHHHhhC--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 578889999999998 5999999999999999999999999888765445799999999999965
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.50 E-value=6.5e-14 Score=80.17 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=53.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|+.++..+++ +++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.
T Consensus 70 ~G~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 70 GGQTSIRPYWRCYYA--DTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp C----CCTTGGGTTT--TEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred CCCHhHHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 578889999999888 69999999999999999999999988876433478999999999999653
No 100
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.50 E-value=3.1e-14 Score=83.61 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=56.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|+++|..++..+++ +++++++|||++++.||+.+. .|+..+... .+++|+++||||+|+...+
T Consensus 86 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 86 AGLEDYDRLRPLSYP--QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp CCSGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCH
T ss_pred CCchhhHHHHHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccch
Confidence 588999999999998 699999999999999999996 899888874 3689999999999997643
No 101
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.49 E-value=7.2e-14 Score=81.42 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=55.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC---CCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ilvgnK~Dl~ 67 (75)
.|+++|..++..+++ +++++|+|||++++.+|+.+..|+.++..... ..++|+++|+||+|+.
T Consensus 65 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 65 AGQERFQSLGVAFYR--GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CSSGGGSCSCCGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcHHHHHhHHHHHh--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 578999999999998 69999999999999999999999988876432 1478999999999997
No 102
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.3e-13 Score=80.94 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=55.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|..++..+++ +++++++|||++++++|+.+ ..|+..+... .+++|+++|+||+|+...
T Consensus 81 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 81 AGQEDYDRLRPLSYP--DTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSD 144 (207)
T ss_dssp TTCTTCTTTGGGGCT--TCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGC
T ss_pred CCcHHHHHHHHhhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhcc
Confidence 578999999999998 69999999999999999999 7898888764 368999999999999654
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.46 E-value=9.9e-14 Score=87.20 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=52.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|++.|..++..+++ +++++|+|||++++.+|+.+..|+..+.......++|+++||||+|+.+..
T Consensus 217 ~G~~~~~~~~~~~~~--~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 217 GGQDKIRPLWRHYFQ--NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp C-----CCSHHHHHT--TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred CCCHhHHHHHHHHhc--cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence 579999999999999 599999999999999999998888777654334689999999999997643
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.46 E-value=3.5e-13 Score=88.04 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=57.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|++.|+.++..|++ ++|++|+|||++++++|+.+..|+.++.+.....++|+++||||+|+.+.
T Consensus 374 ~G~~~~~~~~~~~~~--~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 374 GGQDKIRPLWRHYYT--GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp CCCGGGSGGGGGGGT--TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred CCcHHHHHHHHHHhc--cCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 589999999999999 69999999999999999999999888866443468999999999999654
No 105
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.46 E-value=5.7e-13 Score=76.76 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=54.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|..++..+++ +++++++|||++++.+|+.+..|+..+.... +.|+++|+||+| ...+++
T Consensus 101 ~G~~~~~~~~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~ 164 (208)
T 3clv_A 101 AGQERYASIVPLYYR--GATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQV 164 (208)
T ss_dssp TTGGGCTTTHHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCS
T ss_pred CCcHHHHHHHHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccC
Confidence 578999999999998 5999999999999999999999999887642 389999999999 444444
No 106
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.45 E-value=6.3e-14 Score=89.42 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=50.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC----------hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+||++|+.++..|++ +++++|+|||+++ .++|..+..|+..+.+.....++|++|+|||+||.+
T Consensus 209 ~Gq~~~r~~w~~~f~--~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~ 282 (362)
T 1zcb_A 209 GGQRSERKRWFECFD--SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282 (362)
T ss_dssp CC-------CTTSCT--TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred cchhhhhhhHHHHhC--CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhh
Confidence 799999999999999 7999999999999 789999999998887654346899999999999964
No 107
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=2.4e-13 Score=78.64 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=55.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+..
T Consensus 64 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 64 TGSHQFPAMQRLSIS--KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp CGGGSCHHHHHHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred CChHHhHHHHHHhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 578999999999998 49999999999999999999988877766432 24789999999999964
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.41 E-value=5.1e-13 Score=83.19 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=53.1
Q ss_pred cccccc-----hhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCF-----TNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f-----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++| ..+++.+++ +++++|+|||+++++||+++..|...+.... ..+++|+++||||+|+.+
T Consensus 60 ~G~~~~~~~~~~~~~~~~~~--~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 60 GGQDVFMENYFTKQKDHIFQ--MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp CCSHHHHHHHHTTTHHHHHT--TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred CCcHHHhhhhhhhHHHHHhc--cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 578888 788888888 6999999999999999999988765544321 246799999999999976
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.41 E-value=5e-13 Score=82.62 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=55.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+|+++|..++..|++ +++++++|||++++.||+.+. .|+..+... .+++|+++||||+|+...
T Consensus 211 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 211 AGLEDYDRLRPLSYP--QTDVFLICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp CCCGGGTTTGGGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTC
T ss_pred CCchhhhHHHHHhcc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccc
Confidence 588999999999998 699999999999999999996 798888764 358999999999999653
No 110
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.38 E-value=7.9e-13 Score=76.37 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=56.2
Q ss_pred cccccchhhhhhhhhcc--CCcEEEEEEECC-ChhHHHHHHHHHHHHHhhc---CCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTY--HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~--~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|+.....|++.. .++++++|||++ ++++|..+..|+..+.... ...++|+++|+||+|+.+.+.+
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 99 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp TTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 57888888888887621 279999999999 9999999999987776532 2357999999999999876654
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=9.8e-13 Score=77.38 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=57.5
Q ss_pred cccccchhhhhhhhhcc--CCcEEEEEEECC-ChhHHHHHHHHHHHHHhhc---CCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTY--HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~--~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|+++|+.+...|++.. .++++|+|||.+ ++++|..+..|+.++.... ...++|+++|+||+|+...+.+
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp CCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 68899999988888721 279999999999 9999999999988876542 2367999999999999876654
No 112
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.07 E-value=4.3e-14 Score=82.62 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=55.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|+++|..++..+++ +++++++|||++++.+|+.+. .|+..+... .+++|+++||||+|+.+.
T Consensus 86 ~G~~~~~~~~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 86 AGQEDYDRLRPLSYP--QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD 149 (204)
Confidence 578899999999988 599999999999999999996 898888763 347999999999999754
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.34 E-value=6.5e-12 Score=73.68 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=50.1
Q ss_pred cccccchh-hhhhhhhccCCcEEEEEEECCChh-HHHHHHH-HHHHHHhhc-CCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTN-LVVNFVQTYHPDVFVIVYSVIERK-TFKKAED-MLKTLWDSK-YIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~-~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~-~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|+++|+. +++.|++ +++++++|||+++.. ++..+.. |...+.... ...++|+++||||+|+...+
T Consensus 62 ~G~~~~~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 62 PGHESLRFQLLDRFKS--SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp CCCHHHHHHHHHHHGG--GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred CCChhHHHHHHHHHHh--hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 68899987 8888888 599999999999964 5766655 444443321 23578999999999997654
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.33 E-value=6.8e-12 Score=73.13 Aligned_cols=67 Identities=24% Similarity=0.385 Sum_probs=57.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
+|+++|+.+...+++ +++++++|||+++..+|+++..|+..+.... ..+.|+++|+||+|+.+.+.+
T Consensus 62 ~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~ 128 (199)
T 2f9l_A 62 AGQERYRRITSAYYR--GAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 128 (199)
T ss_dssp SSGGGTTCCCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCS
T ss_pred CCchhhhhhhHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCc
Confidence 578889988888888 5999999999999999999999998876542 357899999999999765554
No 115
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.26 E-value=2.1e-11 Score=70.88 Aligned_cols=67 Identities=24% Similarity=0.375 Sum_probs=56.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|+++|..+.+.+++ +++++++|||+++..+|+++..|+..+.... ..+.|+++++||+|+.+.+.+
T Consensus 86 ~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~ 152 (191)
T 1oix_A 86 AGLERYRAITSAYYR--GAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAV 152 (191)
T ss_dssp CSCCSSSCCCHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCS
T ss_pred CCCcchhhhhHHHhh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccccc
Confidence 467888888899888 5999999999999999999999998876542 357899999999999765544
No 116
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.26 E-value=3.3e-12 Score=79.56 Aligned_cols=62 Identities=19% Similarity=0.072 Sum_probs=53.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
..+|+|+.+...+++ |+|++++|||++++. +++.+.+|+..+.. .++|+++|+||+||.+.+
T Consensus 64 ~i~er~~~l~r~~~~--naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 64 EVEERKNLLIRPKVA--NVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EECCCSCEEETTEEE--SCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHH
T ss_pred eeCChHHHHhHHHHH--hcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCcc
Confidence 358899999999888 799999999999997 99999999987764 568999999999996543
No 117
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.07 E-value=2.6e-10 Score=64.67 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+++|..++..+++ +++++++|||+++ +.+++.+.. +. ..++|+++|+||+|+..
T Consensus 63 ~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~l~~----~~----~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 63 PGHEAFTTMRARGAQ--VTDIVILVVAADDGVMPQTVEAINH----AK----AANVPIIVAINKMDKPE 121 (178)
T ss_dssp CSSSSSSCSCCSSCC--CCCEEEEEEETTCCCCHHHHHHHHH----HG----GGSCCEEEEEETTTSSC
T ss_pred CCCHHHHHHHHHHHh--hCCEEEEEEECCCCCcHHHHHHHHH----HH----hCCCCEEEEEECccCCc
Confidence 578899988888887 6999999999998 555544322 22 24689999999999965
No 118
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.06 E-value=4e-10 Score=66.89 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=42.2
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
|..+.. ++. +++++++|||++++.+|.. ...|+..+... .+++|+++||||+|+.+.+.++
T Consensus 99 ~~~~~~-~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~ 161 (228)
T 2qu8_A 99 MTTITA-LAH--INGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLS 161 (228)
T ss_dssp HHHHHH-HHT--SSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCC
T ss_pred HHHHHH-hhc--cccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhH
Confidence 444443 344 5899999999999988862 24566666542 3578999999999998766553
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.06 E-value=2.2e-10 Score=75.71 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=53.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
+|++.|..+...|++ +++++|+|||+++. +.+..|..++.... ++.|+++||||+|+...+.+.
T Consensus 106 ~G~e~~~~~~~~~l~--~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~ 169 (535)
T 3dpu_A 106 GGQEIMHASHQFFMT--RSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIE 169 (535)
T ss_dssp CSCCTTTTTCHHHHH--SSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCC
T ss_pred CcHHHHHHHHHHHcc--CCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccC
Confidence 579999999999998 59999999999765 55677998888753 578999999999998766653
No 120
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.05 E-value=3e-10 Score=64.37 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=45.9
Q ss_pred cccccch------hhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCccc
Q psy5805 3 SRTSCFT------NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73 (75)
Q Consensus 3 s~~e~f~------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 73 (75)
.|+++|. .+...|++..+++++++|+|.++.++ ...|+.++.+ .++|+++||||+|+...+.++
T Consensus 58 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~ 127 (165)
T 2wji_A 58 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIE 127 (165)
T ss_dssp CCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCC
T ss_pred CCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChh
Confidence 4666664 55677774115999999999998654 4557777764 358999999999996555443
No 121
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.05 E-value=1.9e-11 Score=70.04 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=49.8
Q ss_pred cccchhhhhhhhhccC-CcEEEEEEECCChhHHHHH-HHHHHH--------HHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 5 TSCFTNLVVNFVQTYH-PDVFVIVYSVIERKTFKKA-EDMLKT--------LWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~~-~~~~ilv~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
+++|+.+...|++ + +++++++|++.+..+|.++ ..|... +.......++|+++||||+|+...+
T Consensus 65 ~~~~~~~~~~~~~--~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 65 QERIKDEIVHFIE--DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHHHHHHHHH--HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHHHHHHHHHHHH--hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 7889999998888 4 8889999999999999988 778653 2221112578999999999997643
No 122
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.99 E-value=2.7e-10 Score=65.21 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=40.3
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 15 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 15 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+++ +++++++|||.+++.|++ ...|+.++.+.. ..++|+++|+||+|+.+
T Consensus 80 ~~~--~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 80 EIE--QADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITG 129 (172)
T ss_dssp HHH--TCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHC
T ss_pred HHH--hCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCc
Confidence 455 699999999999999987 457777776643 35799999999999954
No 123
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.94 E-value=9.9e-10 Score=63.22 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=46.4
Q ss_pred cccchhhhhhhhhccCC---cEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 5 TSCFTNLVVNFVQTYHP---DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~~~---~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
++.|..+...|++. + +++++|+|.++..++.... +...+.. .++|+++|+||+|+...+++
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 89 REAWGRMIETYITT--REELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp HHHHHHHHHHHHHH--CTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGH
T ss_pred HHHHHHHHHHHHhh--hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHH
Confidence 77888889998884 6 9999999999988887643 1122222 56899999999999765543
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=2.9e-09 Score=60.94 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=45.9
Q ss_pred cccccch------hhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFT------NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|. .+...|++..+++++++|+|.++ ++....|..++.. .++|+++|+||+|+...+.+
T Consensus 62 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~ 130 (188)
T 2wjg_A 62 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGI 130 (188)
T ss_dssp CCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTC
T ss_pred CCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccc
Confidence 4667764 45666664114999999999875 5667778877764 46899999999999755544
No 125
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.80 E-value=6.7e-09 Score=65.84 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=49.5
Q ss_pred cchhhhhhhhhcc-CCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcC-CCCCeEEEEeeCCCCcC
Q psy5805 7 CFTNLVVNFVQTY-HPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLER 68 (75)
Q Consensus 7 ~f~~~~~~~~~~~-~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~ 68 (75)
.+..+...|++.. .++++|+|+|+++ +++++.+..|..++..... ..+.|+++|+||+|+..
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~ 288 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE 288 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence 4555666666533 4999999999999 8999999999999987531 25789999999999964
No 126
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=64.88 Aligned_cols=63 Identities=10% Similarity=0.107 Sum_probs=40.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHH---hhc-CCCCCeEEEEeeCC-CCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLW---DSK-YIGEKAVILVANKA-DLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~---~~~-~~~~~~~ilvgnK~-Dl~~ 68 (75)
+||++++.++..||. ++||+|+|.|.+|++-++ .+.-+.++. ... ...++|+++.+||. |+..
T Consensus 110 GGQ~klRplWr~Yy~--~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 110 GSRYSVIPQIQKVCE--VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp -------CCHHHHHH--HCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred CcHHHHHHHHHHHhc--CCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 699999999999999 699999999999996554 333332222 111 13679999999995 7754
No 127
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.78 E-value=1e-08 Score=57.04 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=36.8
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+......+++ +++++++|+|.++..+... .|+..+... .++|+++||||+|+.+.
T Consensus 69 ~~~~~~~~~~--~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 69 IQEKVDRALE--DAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHHTT--TCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHHHHHHHH--hCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccc
Confidence 3445555666 6999999999998644432 233222221 45799999999999653
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.74 E-value=1.9e-08 Score=65.10 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=47.6
Q ss_pred ccchhhhhh-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 6 SCFTNLVVN-FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 6 e~f~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
|+|..++.. +++ ++|++++|+|.++..+++.. .|...+.. .+.|+++|+||+|+.+.+.+
T Consensus 244 e~~~~~~~~~~~~--~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~ 304 (436)
T 2hjg_A 244 EKYSVLRALKAID--RSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDES 304 (436)
T ss_dssp SHHHHHHHHHHHH--HCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTT
T ss_pred HHHHHHHHHHHHH--hCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchH
Confidence 778877663 666 49999999999999888876 57766654 46899999999999765543
No 129
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.72 E-value=2.4e-08 Score=62.20 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=45.3
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
+......+++ ++|++++|+|.++..++.....|+..+.. .++|+++|+||+|+.
T Consensus 82 ~~~~~~~~l~--~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 82 MVEIAKQSLE--EADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHH--HCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGS
T ss_pred HHHHHHHHhh--cCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCC
Confidence 4456667777 59999999999999999998888877765 458999999999996
No 130
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.71 E-value=3.1e-08 Score=66.66 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=46.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|..++..+++ .+|++|+|+|.++ ++|++.+..+ .. .++|+++++||+|+..
T Consensus 78 PGhe~F~~~~~r~~~--~aD~aILVvDa~~Gv~~qT~e~l~~l----~~----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 78 PGHEAFTTLRKRGGA--LADLAILIVDINEGFKPQTQEALNIL----RM----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSCCTTSBCSSSB--SCSEEEEEEETTTCCCHHHHHHHHHH----HH----TTCCEEEEEECGGGST
T ss_pred CCcHHHHHHHHHHHh--hCCEEEEEEECCCCccHhHHHHHHHH----HH----cCCeEEEEeccccccc
Confidence 589999999998888 5999999999999 8888776532 22 4689999999999964
No 131
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.70 E-value=2.5e-08 Score=57.06 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=42.0
Q ss_pred cccchhhhhhhhhcc-CCcEEEEEEECCChhH--HHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 5 TSCFTNLVVNFVQTY-HPDVFVIVYSVIERKT--FKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~-~~~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
++.|..+.+.|++.. +++++++|+|.++..+ +..+..|+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 88 RMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCC
Confidence 677888889888842 3399999999987643 3444455433 2589999999999964
No 132
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.69 E-value=1.2e-08 Score=66.05 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=47.8
Q ss_pred CcccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhc----CCCCCeEEEEeeCCCCcC
Q psy5805 2 ASRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK----YIGEKAVILVANKADLER 68 (75)
Q Consensus 2 ~s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~----~~~~~~~ilvgnK~Dl~~ 68 (75)
..||++|......+++ ++|++|+|+|.++ .+|+.+..|..+..++. ..+-.|+++++||+|+.+
T Consensus 91 tpG~~~f~~~~~~~~~--~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 91 APGHRDFVKNMITGAS--QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CSSSTTHHHHHHHTSS--CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred CCCcHHHHHHHHhhhh--hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 3689999988888888 5999999999998 88987665544333221 112236899999999975
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.67 E-value=6.5e-08 Score=65.20 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=50.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||+.|......+++. +|++|+|+|.++..+++....|..... .++|+++|+||+|+.+.
T Consensus 79 PGh~dF~~ev~~~l~~--aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAA--CEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp CCCGGGHHHHHHHHHH--CSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred CCchHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCcccc
Confidence 5899999888888884 999999999999888888888865543 45799999999999754
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.67 E-value=9.6e-08 Score=64.43 Aligned_cols=60 Identities=15% Similarity=0.124 Sum_probs=50.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||+.|......+++ .+|++++|+|.++..+++....|..... .++|+++|+||+|+.+.
T Consensus 81 PGh~dF~~ev~r~l~--~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 81 PGHVDFSYEVSRALA--ACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSA 140 (600)
T ss_dssp CCSGGGHHHHHHHHH--TCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTC
T ss_pred CCcHhHHHHHHHHHH--hCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCcccc
Confidence 589999988888888 5999999999999888888888865443 46899999999999753
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.67 E-value=4.4e-08 Score=62.87 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=51.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||++|......+++ ++|++++|+|.++..++.+...|+..+... ...|+++|+||+|+.+.
T Consensus 83 PGh~~~~~~~~~~~~--~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 83 PGHEVLMATMLSGAA--LMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSK 144 (403)
T ss_dssp CCCGGGHHHHHHHHT--TCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCH
T ss_pred CCcHHHHHHHHHHHh--hCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccch
Confidence 589999998888888 599999999999988888888887766653 23589999999999653
No 136
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.66 E-value=3.1e-08 Score=60.91 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=45.1
Q ss_pred cccccch------hhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFT------NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|. .+...|+...++|++++|+|.++.+++ ..|..++.+ .++|+++|+||+|+...+.+
T Consensus 57 pG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~ 125 (272)
T 3b1v_A 57 PGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGK 125 (272)
T ss_dssp CCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTC
T ss_pred CCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCc
Confidence 4667765 566667651149999999999987654 346666654 46899999999999654443
No 137
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.65 E-value=2.1e-08 Score=63.97 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=45.3
Q ss_pred cccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 5 TSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+|+++.+.+++ +++++++|+|++++. ..|..++.+. ..+.|+++|+||+||..
T Consensus 56 ~e~f~~~l~~i~~--~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~ 110 (368)
T 3h2y_A 56 DDDFLRILNGIGK--SDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIP 110 (368)
T ss_dssp CHHHHHHHHHHHH--SCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhc--cCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCC
Confidence 5789999999998 588999999999864 4576677664 35789999999999964
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.63 E-value=3.8e-08 Score=64.71 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=39.5
Q ss_pred hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 15 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 15 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
+++ ++|++++|+|.+++.+++++..+...+... .+.|+++|+||+|+...+.
T Consensus 309 ~~~--~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~ 360 (476)
T 3gee_A 309 KMA--EADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANAD 360 (476)
T ss_dssp CCS--SCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTH
T ss_pred hcc--cCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccc
Confidence 445 699999999999999987655544444432 3689999999999976554
No 139
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.62 E-value=4.7e-08 Score=59.55 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=44.1
Q ss_pred cccccchh------hhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 3 SRTSCFTN------LVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 3 s~~e~f~~------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
.|++.|.. +...|+..-+++++++|+|.++.++.. .|..++.. .++|+++|+||+|+...+.+
T Consensus 60 pG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 60 PGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp CCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTC
T ss_pred CCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccch
Confidence 46666654 445665311699999999999876543 46666654 36899999999999655544
No 140
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.61 E-value=9.1e-08 Score=62.71 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=41.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHH------HHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKA------EDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~------~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||++|......+++ ++|++|+|+|.++..++..+ ......+.. .+..|+++|+||+|+.+.
T Consensus 119 PG~~~f~~~~~~~~~--~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 119 PGHRDFVPNAIMGIS--QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CCCGGGHHHHHHHHT--TCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred CCcHHHHHHHHHhhh--hCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccc
Confidence 589999999999998 59999999999997665432 111112221 233469999999999764
No 141
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.60 E-value=1.7e-08 Score=66.01 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=36.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++. .||+...+|.+.+.... ..++| +++|+||+|+..
T Consensus 129 PGh~~f~~~~~~~~~--~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 129 PGHKGYVTNMINGAS--QADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPS 195 (467)
T ss_dssp CC-----------TT--SCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTT
T ss_pred CCcHHHHHHHHhhcc--cCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCC
Confidence 589999888888887 59999999999986 46654444444433222 24577 999999999953
No 142
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.60 E-value=1.8e-08 Score=61.44 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=38.9
Q ss_pred hhhhhh--hccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 11 LVVNFV--QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 11 ~~~~~~--~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
+...|+ + ++|++++|+|.++.+++..+..|+ .. .++|+++|+||+|+...+.
T Consensus 74 i~~~~~~~~--~~d~vi~VvDas~~~~~~~l~~~l---~~----~~~pvilv~NK~Dl~~~~~ 127 (256)
T 3iby_A 74 IAAQSVIDL--EYDCIINVIDACHLERHLYLTSQL---FE----LGKPVVVALNMMDIAEHRG 127 (256)
T ss_dssp HHHHHHHHS--CCSEEEEEEEGGGHHHHHHHHHHH---TT----SCSCEEEEEECHHHHHHTT
T ss_pred HHHHHHhhC--CCCEEEEEeeCCCchhHHHHHHHH---HH----cCCCEEEEEEChhcCCcCC
Confidence 556666 5 699999999999987776654443 22 3689999999999865443
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.60 E-value=1e-07 Score=59.28 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=41.4
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHH-HHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDML-KTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
|......+++ ++|++++|+|.++..+.. ..|+ +.+... .+++|+++|+||+|+...+
T Consensus 76 ~~~~~~~~l~--~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 76 MDQEVYEALA--DVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHHHHHHHTS--SCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSH
T ss_pred HHHHHHHHHh--cCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCch
Confidence 5566667777 699999999999875544 3454 445442 2578999999999997543
No 144
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.58 E-value=1.3e-07 Score=61.44 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=45.5
Q ss_pred cccchhhhhh-hhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 5 TSCFTNLVVN-FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 5 ~e~f~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
+|+|..++.. +++ +++++++|+|.++.-+ +....|...+.. .+.|+++|+||+|+.+.+++
T Consensus 263 ~e~~~~~~~~~~~~--~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~ 324 (456)
T 4dcu_A 263 TEKYSVLRALKAID--RSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDES 324 (456)
T ss_dssp CSHHHHHHHHHHHH--HCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSS
T ss_pred HHHHHHHHHHHHHh--hCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchH
Confidence 7899988876 556 4999999999987533 233455555554 45899999999999866554
No 145
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.57 E-value=4.1e-08 Score=61.57 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=44.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHH----HHhhcCCCCCeEEEEeeC-CCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKT----LWDSKYIGEKAVILVANK-ADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~----~~~~~~~~~~~~ilvgnK-~Dl~~ 68 (75)
+||++.+.++..||. ++||+|+|.|.+|++.++ .+.-+.+ +.+.....++|+++.+|| .|+.+
T Consensus 195 GGQ~~lRplWr~Yy~--~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCE--VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp --CCCCCHHHHHHHH--HCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 799999999999999 699999999999997654 3222221 222111367999999997 58864
No 146
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.51 E-value=1.1e-07 Score=58.34 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=33.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
++|++++|+|.++.++...+..| +.+ .++|+++|+||+|+.+.+.
T Consensus 85 ~~d~ii~VvD~~~~~~~~~~~~~---l~~----~~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 85 DADLLINVVDASNLERNLYLTLQ---LLE----LGIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHH---HHH----HTCCEEEEEECHHHHHHTT
T ss_pred CCCEEEEEecCCChHHHHHHHHH---HHh----cCCCEEEEEECccchhhhh
Confidence 69999999999997766554444 333 2589999999999865443
No 147
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.50 E-value=1.8e-07 Score=64.96 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=49.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.||++|......+++ .+|++|+|+|.++..+++....|..... .++|+++|+||+|+.
T Consensus 106 PG~~df~~~~~~~l~--~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 106 PGHVDFSSEVTAALR--VTDGALVVVDTIEGVCVQTETVLRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCSSCHHHHHHHH--TCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCEEEEEEECHHHH
T ss_pred cCchhhHHHHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCeEEEEECCCcc
Confidence 589999999999998 5999999999999988888777754332 468999999999985
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.50 E-value=5e-08 Score=65.08 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=46.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|..++..+++ ++|++++|+|.++....+....|. .+. ..++|+++|+||+|+.+
T Consensus 60 PGhe~f~~~~~~~~~--~aD~vILVVDa~dg~~~qt~e~l~-~~~----~~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 60 PGHAAFSAMRARGTQ--VTDIVILVVAADDGVMKQTVESIQ-HAK----DAHVPIVLAINKCDKAE 118 (537)
T ss_dssp SSSCCTTTSBBSSSB--SBSSCEEECBSSSCCCHHHHHHHH-HHH----TTTCCEEECCBSGGGTT
T ss_pred CChHHHHHHHHHHHc--cCCEEEEEEECCCCccHHHHHHHH-HHH----HcCCcEEEEEecccccc
Confidence 689999999999998 599999999999865554444332 222 25689999999999964
No 149
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.50 E-value=2e-07 Score=60.55 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=42.1
Q ss_pred cccccchhhh-------hhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 3 SRTSCFTNLV-------VNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 3 s~~e~f~~~~-------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
.|++.|..+. ..+++ ++|++++|+|.+..+. ...|+..+.+. ++|+++|+||+|+...+.
T Consensus 91 pG~~d~~~l~~~~~~~~~~~l~--~aD~vllVvD~~~~~~---~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~ 157 (423)
T 3qq5_A 91 PGLDDVGELGRLRVEKARRVFY--RADCGILVTDSAPTPY---EDDVVNLFKEM----EIPFVVVVNKIDVLGEKA 157 (423)
T ss_dssp SSTTCCCTTCCCCHHHHHHHHT--SCSEEEEECSSSCCHH---HHHHHHHHHHT----TCCEEEECCCCTTTTCCC
T ss_pred cCCCcccchhHHHHHHHHHHHh--cCCEEEEEEeCCChHH---HHHHHHHHHhc----CCCEEEEEeCcCCCCccH
Confidence 4666666552 33555 5999999999943333 35677777652 689999999999976543
No 150
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.49 E-value=5.2e-07 Score=58.43 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=43.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++... .+...|+..+... +-.|+++|+||+|+.+
T Consensus 112 pGh~~f~~~~~~~~~--~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 112 PGHEQYTRNMATGAS--TCDLAIILVDARYGVQ-TQTRRHSYIASLL---GIKHIVVAINKMDLNG 171 (434)
T ss_dssp CCSGGGHHHHHHHHT--TCSEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCEEEEEEECTTTTT
T ss_pred CChHHHHHHHHHHHh--hCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEEcCcCCc
Confidence 589999888888887 5999999999988542 2334444444431 2236999999999975
No 151
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.48 E-value=9.9e-08 Score=55.93 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=42.5
Q ss_pred cccchhhhhhhhhcc-CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 5 TSCFTNLVVNFVQTY-HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~-~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
++.|..+...|++.. +++++++|+|.++..+.. -..|+..+.. .++|+++|+||+|+...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 99 KAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHH
T ss_pred HHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChh
Confidence 566777887887743 477899999998754322 2345455543 458999999999996543
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.48 E-value=2.6e-07 Score=59.24 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=45.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++... .+...|+..+.. .++| +++++||+|+.+
T Consensus 83 pG~~~f~~~~~~~~~--~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 83 PGHADYIKNMITGAA--QMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp CCSGGGHHHHHHHHT--TCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred CChHHHHHHHHHHHH--HCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence 589999888888888 5999999999988653 344555555554 3577 899999999974
No 153
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.46 E-value=6.2e-07 Score=59.64 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=48.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|......+++ .+|++|+|+|.++..+......|. .+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~--~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLT--AVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGG--GCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHH--hCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence 589999999999998 499999999999987777776663 3332 4689999999999964
No 154
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.46 E-value=4.8e-08 Score=62.29 Aligned_cols=56 Identities=18% Similarity=0.263 Sum_probs=44.1
Q ss_pred ccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 4 RTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 4 ~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.+|+|++..+.+++ +++++++|+|++++.+ .|..++.+. ..+.|+++|+||+||..
T Consensus 57 ~~e~f~~~L~~~~~--~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~NK~DLl~ 112 (369)
T 3ec1_A 57 DDDDFLSMLHRIGE--SKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVGNKADLLP 112 (369)
T ss_dssp --CHHHHHHHHHHH--HCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEEECGGGSC
T ss_pred CHHHHHHHHHHhhc--cCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEEEChhcCC
Confidence 47899999999887 4999999999999874 465555553 35789999999999964
No 155
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.46 E-value=1.5e-07 Score=57.17 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=44.7
Q ss_pred cccccchhhhhhhhhc-------cCCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCC--CeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTNLVVNFVQT-------YHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGE--KAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~-------~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~r 70 (75)
.|++.|..+.+.+++. .+++++++|++++... +... ..|+..+..... .+ .|+++|+||+|+...+
T Consensus 92 pG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 92 PGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG-KEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp CCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC-GGGGGGEEEEEECTTCCCST
T ss_pred CCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc-hhhhcCEEEEEeCcccCCCC
Confidence 4677776655555431 1589999999998765 5444 567777766432 22 4899999999996443
No 156
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.44 E-value=1.8e-07 Score=61.99 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=43.9
Q ss_pred CcccccchhhhhhhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 2 ASRTSCFTNLVVNFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 2 ~s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
..||+.|..++..+.+ .+|++++|+|.++ +++++.+. .+.. .++|+++++||+|+.+
T Consensus 58 TPGhe~f~~~~~~~~~--~aD~aILVVda~~g~~~qT~e~l~----~~~~----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 58 TPGHAAFTSMRARGAQ--ATDIVVLVVAADDGVMPQTIEAIQ----HAKA----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCTTTCCTTSBCSSSB--SCSSEEEEEETTTBSCTTTHHHHH----HHHH----TTCCEEEEEECSSSST
T ss_pred CCCcHHHHHHHHHHHh--hCCEEEEEeecccCccHHHHHHHH----HHHh----cCceEEEEEEeccccc
Confidence 3589999999888887 5999999999988 45554432 2222 4679999999999964
No 157
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.44 E-value=9.6e-07 Score=56.31 Aligned_cols=59 Identities=14% Similarity=0.226 Sum_probs=44.4
Q ss_pred ccchhhhhhhhhccCCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 6 SCFTNLVVNFVQTYHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 6 e~f~~~~~~~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
|.|++..+. +. ++|++++|+|++++. ++..+..|...+.... ..+.|+++|+||+|+.+
T Consensus 246 e~f~~tl~~-~~--~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 246 DAFFVTLSE-AK--YSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPILVTLNKIDKIN 306 (364)
T ss_dssp HHHHHHHHG-GG--GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCEEEEEECGGGCC
T ss_pred HHHHHHHHH-HH--hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCEEEEEECCCCCC
Confidence 446555543 34 499999999999987 6777777776666542 36789999999999864
No 158
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.43 E-value=3.8e-07 Score=59.04 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=40.4
Q ss_pred cchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 7 CFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+++.....+++ ++|++++|+|.++..++.. .|+..+.. ..+.|+++|+||+|+...
T Consensus 71 ~~~~~~~~~~~--~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 71 QIRQQAEIAMD--EADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHHHHHH--HCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC---
T ss_pred HHHHHHHHHHH--hCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCccc
Confidence 67777788888 5999999999998766654 34433332 256899999999998643
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.41 E-value=3.5e-07 Score=57.82 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=41.4
Q ss_pred CCcEEEEEEECCChh--HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 20 HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.++++++|+|+++.. +++....|+.++.... ++.|+++|+||+|+...+
T Consensus 246 ~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEE 296 (357)
T ss_dssp TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHH
T ss_pred cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChH
Confidence 599999999999988 7888889998887643 378999999999997543
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.41 E-value=6.1e-07 Score=57.50 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=43.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++....+....| ..+.. .++| +++++||+|+.+
T Consensus 74 pG~~~f~~~~~~~~~--~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 74 PGHADYVKNMITGTA--PLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp SSHHHHHHHHHHTSS--CCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCS
T ss_pred CChHHHHHHHHhhHh--hCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCC
Confidence 588999888888888 59999999999985433333333 33433 3577 789999999974
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.2e-07 Score=62.66 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=42.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||++|......+++ ++|++|+|+|.++.. +|....++...+......+..|+++|+||+|+.+.
T Consensus 253 PG~e~f~~~~~~~~~--~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 253 PGHRDFVPNAIMGIS--QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CSSSCHHHHHTTTSS--CCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred CCCcccHHHHHHHHh--hcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 589999988888888 599999999998742 22111122222221112233469999999999763
No 162
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.39 E-value=5.2e-07 Score=58.92 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=42.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCCh---hHHH---HHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIER---KTFK---KAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++. .||+ +...++..+.. .++| +++|+||+|+.+
T Consensus 93 PGh~~f~~~~~~~~~--~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 93 PGHRDFIKNMITGTS--QADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CCCTTHHHHHHHSSS--CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CCcHHHHHHHHhhhh--hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 589999988888888 59999999999875 3442 22222223332 3455 899999999963
No 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.38 E-value=9.1e-07 Score=58.83 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=43.4
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||+.|......+++ .+|++|+|+|.++...-.. ..++..+ ...++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~--~aD~~IlVvDa~~g~~~~t-~~~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLT--AVDCCLMVIDAAKGVEDRT-RKLMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHHHHHGGG--GCSEEEEEEETTTCSCHHH-HHHHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CCChhHHHHHHHHHH--HCCEEEEEEeCCccchHHH-HHHHHHH----HHcCCCEEEEEcCcCCccc
Confidence 589999988888888 4999999999987532211 2222222 2357899999999999653
No 164
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.37 E-value=1.1e-06 Score=56.38 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=41.9
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC----ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI----ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~----~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||+.|......... .+|++|+|+|.+ .+++++++..| .. ....|+++|+||+|+.+.
T Consensus 89 PGh~~f~~~~~~~~~--~~D~~ilVvda~~g~~~~qt~e~l~~~----~~---l~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 89 PGHETLMATMLSGAS--LMDGAILVIAANEPCPQPQTKEHLMAL----EI---LGIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp SSHHHHHHHHHTTCS--CCSEEEEEEETTSCSSCHHHHHHHHHH----HH---TTCCCEEEEEECTTSSCT
T ss_pred CCHHHHHHHHHHhHh--hCCEEEEEEECCCCCCCchhHHHHHHH----HH---cCCCeEEEEEEccCCCCH
Confidence 578888766555555 489999999999 46677766544 22 123479999999999654
No 165
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.35 E-value=1.6e-06 Score=59.22 Aligned_cols=60 Identities=17% Similarity=0.021 Sum_probs=49.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.||+.|......+++. +|++|+|+|.++..++.....|.. +.. .++|+++|+||+|+...
T Consensus 85 PG~~df~~~~~~~l~~--aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 85 PGHVDFTIEVERSMRV--LDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CSSTTCHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred cCccchHHHHHHHHHH--CCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCcccC
Confidence 5889999999998884 999999999999888887777753 332 36899999999999653
No 166
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.32 E-value=5.8e-07 Score=54.72 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=41.8
Q ss_pred cccccchh------hhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 3 SRTSCFTN------LVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 3 s~~e~f~~------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.|++.|.. +...|+..-++|++++|+|.++.+ ....|..++.. ...+|+++|+||+|+...+
T Consensus 58 pG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 58 PGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFE---MEVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp CCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH---TTCCSEEEEEECHHHHHHH
T ss_pred CCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHh---cCCCCEEEEEEChhcCccc
Confidence 46666665 566666311699999999998864 33344445544 2338999999999986443
No 167
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.30 E-value=5.8e-07 Score=58.44 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=41.8
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChh---HHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKA-VILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~ 67 (75)
.||++|......+++ ++|++++|+|.++.. +|+...++.+.+.... ..++| +++|+||+|+.
T Consensus 103 PGh~~f~~~~~~~~~--~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 103 PGHKSFVPNMIGGAS--QADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVKHLIVLINKMDDP 168 (439)
T ss_pred CChHHHHHHHHhhHh--hCCEEEEEEECCCCccccccCCCchHHHHHHHHH-HcCCCeEEEEeecCCCc
Confidence 589999988888888 499999999998753 2321122222222111 13456 89999999984
No 168
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.29 E-value=1.4e-06 Score=56.48 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=37.7
Q ss_pred cchhhhhhhhhccCCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 7 CFTNLVVNFVQTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.++.....+++ ++|++++|+|.++..+... +..|+.. .+.|+++|+||+|+.
T Consensus 70 ~~~~~~~~~~~--~ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 70 KMKEVTLNMIR--EADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENL 123 (439)
T ss_dssp HHHHHHHHHHT--TCSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSH
T ss_pred HHHHHHHHHHH--hCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCc
Confidence 35666777888 6999999999987655432 3334322 257999999999985
No 169
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.28 E-value=2.2e-06 Score=58.65 Aligned_cols=59 Identities=19% Similarity=0.017 Sum_probs=47.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|......+++ .+|++|+|+|.++..+......|. .+.. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~--~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 90 PGHVDFTIEVERSMR--VLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCccchHHHHHHHHH--HCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence 589999988888888 499999999999877666655553 2222 4689999999999864
No 170
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.25 E-value=2.2e-06 Score=56.32 Aligned_cols=56 Identities=21% Similarity=0.121 Sum_probs=43.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|......+++ ++|++++|+|.++ +++++.+. .+.. .++|+++|+||+|+.+
T Consensus 81 PGh~~~~~~~~~~~~--~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 81 PGHADLIRAVVSAAD--IIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAG 139 (482)
T ss_dssp SSHHHHHHHHHHHTT--SCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSC
T ss_pred CChHHHHHHHHHHHh--hCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCccc
Confidence 588999888888888 5999999999998 66766553 2222 3478899999999964
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.24 E-value=1.4e-06 Score=56.74 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=39.4
Q ss_pred cccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 5 TSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 5 ~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+++++.+...+++ ++|++++|+|..+. +.....|+.++.. ..+.|+++|+||+|+.+.
T Consensus 89 ~~~~~~~~~~~~~--~ad~il~VvD~~~~--~~~~d~~l~~~l~---~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 89 LAQIRQQAEIAMD--EADVIIFMVNGREG--VTAADEEVAKILY---RTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHHHHHHH--HCSEEEEEEESSSC--SCHHHHHHHHHHT---TCCSCEEEEEECC-----
T ss_pred HHHHHHHHHhhHh--hCCEEEEEEeCCCC--CChHHHHHHHHHH---HcCCCEEEEEECccchhh
Confidence 7788888899998 59999999997653 3333344444433 257899999999998654
No 172
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.22 E-value=4.7e-06 Score=56.92 Aligned_cols=60 Identities=17% Similarity=-0.044 Sum_probs=48.6
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.|++.|......+++. +|++++|+|.++..++.....|.. +.. .++|+++|+||+|+...
T Consensus 83 PG~~df~~~~~~~l~~--aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 83 PGHVDFTVEVERSLRV--LDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCCSSCCHHHHHHHHH--CSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred cCCcchHHHHHHHHHH--CCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCcccc
Confidence 5788898888888884 999999999999888877766643 333 36899999999999653
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.21 E-value=5.1e-06 Score=53.35 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=41.1
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECC----ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVI----ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~----~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.||+.|......... .+|++++|+|.+ .+++++++..|. .. ...|+++|+||+|+.+
T Consensus 91 PGh~~f~~~~~~~~~--~~D~~ilVvda~~g~~~~qt~e~l~~~~----~~---~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 91 PGHEALMTTMLAGAS--LMDGAILVIAANEPCPRPQTREHLMALQ----II---GQKNIIIAQNKIELVD 151 (410)
T ss_dssp SSHHHHHHHHHHCGG--GCSEEEEEEETTSCSSCHHHHHHHHHHH----HH---TCCCEEEEEECGGGSC
T ss_pred CChHHHHHHHHhhhh--hCCEEEEEEECCCCCCChhHHHHHHHHH----Hc---CCCcEEEEEECccCCC
Confidence 478888766655555 489999999999 456777665442 21 2247999999999965
No 174
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.19 E-value=2.6e-06 Score=55.90 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
++|++++|+|.+++.+... ..|+..+. +.|+++|+||+|+...+.
T Consensus 303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQL 347 (462)
T ss_dssp SCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGGG
T ss_pred cCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcchh
Confidence 6999999999999877655 44544442 369999999999976544
No 175
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.18 E-value=2.9e-06 Score=54.16 Aligned_cols=56 Identities=7% Similarity=-0.045 Sum_probs=42.5
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeE-EEEee-CCCC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVAN-KADL 66 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ilvgn-K~Dl 66 (75)
.||++|......+++ .+|++|+|+| +...+.+.+.|+..+.. .++|. +++.| |+|+
T Consensus 68 PGh~~f~~~~~~~~~--~aD~ailVvd--~~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 68 HSYPKTLKSLITALN--ISDIAVLCIP--PQGLDAHTGECIIALDL----LGFKHGIIALTRSDST 125 (370)
T ss_dssp TTTTTCHHHHHHHHH--TCSEEEEEEC--TTCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS
T ss_pred CChHHHHHHHHHHHH--HCCEEEEEEc--CCCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC
Confidence 589999777777777 5999999999 45566677777666654 23565 78888 9999
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.16 E-value=2.4e-06 Score=52.00 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=35.7
Q ss_pred CCcEEEEEEECCChhHHHHH-HHHHHHHHhhcCCCC--CeEEEEeeCCCCcCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGE--KAVILVANKADLERRR 70 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~--~~~ilvgnK~Dl~~~r 70 (75)
++|++++|+|++.. ++... ..|+..+..... .+ .|+++|+||+|+...+
T Consensus 119 ~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 119 TIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGG
T ss_pred CCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcC
Confidence 59999999999764 45544 477777765421 22 6999999999996544
No 177
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.15 E-value=3.9e-06 Score=51.16 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=41.4
Q ss_pred cchhhhhhhhhccCCcEEE-EEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 7 CFTNLVVNFVQTYHPDVFV-IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.+..+...|++ ++++++ +|+|.++.-+......|...+. ..+.|+++|+||+|+.+.+
T Consensus 150 ~~~~~~~~~~~--~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 150 QIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHHHT--STTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHc--CCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEEEccccCCCC
Confidence 56778888888 588777 6999987655444444554443 2568999999999996543
No 178
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.13 E-value=7.1e-06 Score=54.10 Aligned_cols=47 Identities=15% Similarity=0.258 Sum_probs=35.7
Q ss_pred hhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 13 VNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 13 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
..+++ ++|++++|+|.+++.+++...-| +.+ .+.|+++|+||+|+..
T Consensus 318 ~~~~~--~aD~vl~VvD~s~~~s~~~~~il-~~l------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 318 LQEIE--KADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHHHH--HCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCC
T ss_pred HHHhh--cccEEEEEecCCCCCCHHHHHHH-HHh------cCCCEEEEEECccccc
Confidence 34555 49999999999999888764332 222 3679999999999964
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.11 E-value=1.5e-06 Score=58.01 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=43.6
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
|..+...++. ++|++++|+|.++.........|+..+.. .+.|+++|+||+|+...
T Consensus 178 f~~~~~~~l~--~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 178 FPAVLRWFAE--RVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHHH--HCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHHH--hCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence 5667777777 49999999999887666677777766653 35789999999998654
No 180
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.10 E-value=2.6e-06 Score=61.38 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=44.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++.... +...|+..+.. .++| +++++||+|+.+
T Consensus 367 PGHedF~~~mi~gas--~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 367 PGHADYVKNMITGAA--QMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp CCHHHHHHHHHHTSC--CCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred CChHHHHHHHHHHHh--hCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence 589999888888888 59999999999986433 33344444443 2467 789999999974
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.05 E-value=3.2e-06 Score=50.36 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=33.3
Q ss_pred chhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhc-CCCCCeEEEEeeCCCCcCCCcc
Q psy5805 8 FTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 8 f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
+......+++ +++++++|+|+++...- ...|+..+.... .....|+++|+||+|+...+.+
T Consensus 102 ~~~~~~~~~~--~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 102 IIRCILLTSP--GPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHHHHHTTT--CCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred HHHHHHhcCC--CCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 3333344444 69999999999765432 122333332211 0123589999999998655443
No 182
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.04 E-value=3.9e-07 Score=57.92 Aligned_cols=60 Identities=15% Similarity=0.343 Sum_probs=38.6
Q ss_pred ccchhhhh-------hhhhccCCcEE-----------EEEEECCC-hhHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 6 SCFTNLVV-------NFVQTYHPDVF-----------VIVYSVIE-RKTFKKAE-DMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 6 e~f~~~~~-------~~~~~~~~~~~-----------ilv~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
++|+.+.. .|++. ++++ +++|++++ ..+|..+. .|+..+ ..++|+|+|+||+|
T Consensus 113 e~~~~i~~~i~~~~~~yl~~--~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~D 185 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHD--ESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKAD 185 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHH--HTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCC
Confidence 77888876 67763 5544 47888876 66777664 454433 26789999999999
Q ss_pred CcCCCcc
Q psy5805 66 LERRRQV 72 (75)
Q Consensus 66 l~~~r~v 72 (75)
+...+++
T Consensus 186 l~~~~ev 192 (361)
T 2qag_A 186 TLTLKER 192 (361)
T ss_dssp SSCHHHH
T ss_pred CCCHHHH
Confidence 9765443
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.96 E-value=1.4e-05 Score=54.57 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=42.3
Q ss_pred hhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 9 TNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
......|++ ++|++++|+|.++..+......|...+.. .+.|+++|+||+|+...
T Consensus 191 ~~~~~~~i~--~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 191 NELSLGYVN--NCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHTHHHH--SSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHH--hCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccc
Confidence 445566777 69999999999999888887777554432 35689999999998643
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.94 E-value=2.7e-05 Score=46.90 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCcEEEEEEECCChhHHH-HHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFK-KAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+++++++|+|+++....+ .+..|+.++... ...+.|+++++||.|+.+
T Consensus 105 ~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 105 GPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp CCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTT
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCC
Confidence 799999999998532221 223343333211 123689999999999965
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.94 E-value=1.5e-05 Score=50.34 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=40.2
Q ss_pred hhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 9 TNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
..+...|++ +++++|++++.++.+... ..|...++... ..+.|+++|+||+|+...+
T Consensus 163 ~~~~~~~i~--~~d~iilvv~~~~~~~~~--~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 163 ENMVRSYIE--KPNCIILAISPANQDLAT--SDAIKISREVD-PSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHH--SSSEEEEEEEETTSCGGG--CHHHHHHHHSC-TTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHhh--cCCeEEEEeecccCCcCC--HHHHHHHHHhc-ccCCCEEEEEeCCccCCCc
Confidence 667777887 699999999876554332 34555555432 3567999999999996544
No 186
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.92 E-value=3.8e-05 Score=46.13 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=29.6
Q ss_pred hhhccCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 15 FVQTYHPDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 15 ~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+++ ++|++++|+|.++.... ..+..|+.++.... ....++++++||+|+..
T Consensus 102 ~~~--~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 102 SAP--GPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HTT--CCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTT
T ss_pred cCC--CCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCC
Confidence 445 69999999999863322 22334444432211 12234556666999974
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.87 E-value=5.1e-05 Score=51.67 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=44.3
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.||+.|......+++. ++++++|+|.++.-.... ..++..+.. .++|+++|+||+|+.
T Consensus 82 pG~~~f~~~~~~~l~~--ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEA--ADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCSGGGHHHHHHHHHH--CSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred CCccchHHHHHHHHhh--cCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 5899999888888884 999999999877544333 344444443 358999999999986
No 188
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.86 E-value=4.7e-05 Score=49.29 Aligned_cols=59 Identities=27% Similarity=0.313 Sum_probs=39.0
Q ss_pred ccchhhhh-hhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCCc
Q psy5805 6 SCFTNLVV-NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71 (75)
Q Consensus 6 e~f~~~~~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~ 71 (75)
|.|..++. .+++ .++++++++|.++..++... .+...+.. .+.|+++|+||+|+.+.+.
T Consensus 250 e~~~~~~~~~~i~--~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 250 EKYSNYRVVDSIE--KADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp CCSCCHHHHHHHH--HCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGG
T ss_pred HHHHHHHHHHHHh--hCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchh
Confidence 34443332 3555 49999999999987776543 22233332 4689999999999976543
No 189
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.74 E-value=2.6e-05 Score=47.97 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=37.3
Q ss_pred cchhhhhhhhhccCCcEEEEEEECCChhHH-HHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCCC
Q psy5805 7 CFTNLVVNFVQTYHPDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 70 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r 70 (75)
.+..+...|++ ++|++++|+|.++.... .....+...+. ..+.|+++|+||+|+....
T Consensus 156 ~~~~~~~~~~~--~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~ 214 (315)
T 1jwy_B 156 QIRRMVMAYIK--KQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKG 214 (315)
T ss_dssp HHHHHHHHHHH--STTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSS
T ss_pred HHHHHHHHHHc--CCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcc
Confidence 36667777777 69999999998544311 11112222222 2568999999999996543
No 190
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.68 E-value=6e-06 Score=55.58 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=34.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCCh----------hHHHHHHHHHHHHHhhcCCCCCe-EEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~-~ilvgnK~Dl~~ 68 (75)
.||++|......+++ ++|++|+|+|.++. .+.+.+ ..+.. .++| +|+|+||+|+.+
T Consensus 263 PGh~~f~~~~~~~~~--~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~----lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 263 PGHRDFISGMIAGAS--SADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA----LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ESSSEEEEECCC---------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH----SSCCCEEEEEECGGGGT
T ss_pred CChHHHHHHHHHHHh--hCCEEEEEEECCCCccccccccchHHHHHH----HHHHH----cCCCeEEEEEecccccc
Confidence 489999888888887 59999999999853 333332 22222 2355 899999999964
No 191
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.66 E-value=6.8e-05 Score=46.48 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=33.6
Q ss_pred hhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 13 VNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 13 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
..+++ .+|++++|+|.++ +.....|+.+... ..+.|+++++||+|+..
T Consensus 83 ~~~l~--~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 83 SSSIG--DVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TSCCC--CEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCC
T ss_pred HHHHh--cCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCc
Confidence 44445 6999999999976 4444445443332 24689999999999975
No 192
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.55 E-value=9.6e-05 Score=45.58 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=32.3
Q ss_pred CCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
++|+++.|.|..++.+.. .+.+|+ .+.|.++|.||+||.+
T Consensus 23 ~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~ 64 (282)
T 1puj_A 23 LIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKAD 64 (282)
T ss_dssp GCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSC
T ss_pred hCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCC
Confidence 399999999999998775 344442 5689999999999965
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.28 E-value=0.00046 Score=43.49 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=34.6
Q ss_pred cchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 7 CFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
.++.+...|++ +++.+++++...+. .+... .|...+... ...+.|+++|+||+|+.+.
T Consensus 155 ~~~~~~~~~~~--~~~~iiL~v~~a~~-~~~~~-~~~~i~~~~-~~~~~~~i~V~NK~Dl~~~ 212 (353)
T 2x2e_A 155 QIRDMLMQFVT--KENCLILAVSPANS-DLANS-DALKVAKEV-DPQGQRTIGVITKLDLMDE 212 (353)
T ss_dssp HHHHHHHHHHT--STTEEEEEEEETTS-CGGGC-HHHHHHHHH-CTTCTTEEEEEECGGGSCT
T ss_pred HHHHHHHHHHc--CCCeEEEEEecCCC-ccchh-HHHHHHHHh-CcCCCceEEEeccccccCc
Confidence 67778888887 47766665543322 22211 122222222 2357899999999999654
No 194
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.27 E-value=0.001 Score=41.64 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred CCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 20 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
|+|.+++|.|..++. +...+.+++..... .++|.++|.||+||.+.
T Consensus 86 nvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 86 NVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIED 132 (307)
T ss_dssp CCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCC
T ss_pred hCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCch
Confidence 899999999999765 44455666544432 56889999999999754
No 195
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.16 E-value=0.00085 Score=38.59 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=36.1
Q ss_pred cchhhhhhhhhcc-CCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 7 CFTNLVVNFVQTY-HPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 7 ~f~~~~~~~~~~~-~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.|+.....|++.. .++++++++|+++..++.. +..|+. . ..+|+++|+||+|+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 94 KWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSC
T ss_pred HHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCCC
Confidence 3444444555321 5899999999998766542 333432 1 4578999999999854
No 196
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.12 E-value=0.00056 Score=44.42 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~ 68 (75)
.++.++.++|++ ++++.++..|..++..... ....|.+++.||+|+..
T Consensus 235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 489999999998 7788888888877765420 12568899999999864
No 197
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.12 E-value=0.00041 Score=44.70 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=14.6
Q ss_pred chhhhhhhhhcc-CCcEEEEEEECCCh
Q psy5805 8 FTNLVVNFVQTY-HPDVFVIVYSVIER 33 (75)
Q Consensus 8 f~~~~~~~~~~~-~~~~~ilv~d~~~~ 33 (75)
++.+...+...+ ++|++++|+|.++.
T Consensus 88 ~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 88 GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 344444443222 79999999999886
No 198
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.97 E-value=0.00097 Score=40.51 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.7
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+|+++++.+.++......-..++..+.. ++|+++|+||+|+..
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLT 158 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSC
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCC
Confidence 6788888876653222222334444432 689999999999853
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.87 E-value=0.0003 Score=45.69 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCcEEEEEEECCCh-hHHHHHH-HHHHHHHhhcCCCCCeEEEEeeCCCCcCCCcc
Q psy5805 20 HPDVFVIVYSVIER-KTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQV 72 (75)
Q Consensus 20 ~~~~~ilv~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v 72 (75)
++++.+++|.++.. .+|+.+. .|+..+. .++|+|+|+||+|+...+++
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred CCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence 57777777777765 5677664 5776653 36899999999998654443
No 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.67 E-value=0.00059 Score=41.65 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=30.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
++|.++.|.|..++.+..+. .+. . . +.|.++|.||+||.+
T Consensus 21 ~~D~vl~VvDar~P~~~~~~-----~l~-l--l-~k~~iivlNK~DL~~ 60 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAY-----GVD-F--S-RKETIILLNKVDIAD 60 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCT-----TSC-C--T-TSEEEEEEECGGGSC
T ss_pred hCCEEEEEeeCCCCCcCcCh-----HHH-h--c-CCCcEEEEECccCCC
Confidence 49999999999998776531 111 1 1 679999999999965
No 201
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.54 E-value=0.013 Score=39.29 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=42.7
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
-||..|..=...-.+. +|++|+|.|...----+...-|. .... .++|++++-||+|...
T Consensus 108 PGHvDF~~Ev~raL~~--~DgAvlVvda~~GV~~qT~~v~~-~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTA--VDSALVVIDAAKGVEAQTRKLMD-VCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHS--CSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHh--cCceEEEeecCCCcccccHHHHH-HHHH----hCCceEEEEecccchh
Confidence 3788888777777775 99999999987653333344453 3332 5689999999999864
No 202
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.37 E-value=0.0089 Score=38.21 Aligned_cols=45 Identities=22% Similarity=0.216 Sum_probs=31.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
|+|.+++|.+..-.-+...+.+++..... .++|.+||.||+||.+
T Consensus 130 nvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~ 174 (358)
T 2rcn_A 130 NIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLD 174 (358)
T ss_dssp CCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCC
T ss_pred cCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCC
Confidence 89999999887533355555666544433 3467899999999964
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.07 E-value=0.02 Score=39.33 Aligned_cols=59 Identities=17% Similarity=0.010 Sum_probs=41.0
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
-||-.|..=...-.+. +|++|+|.|...==.-+...-|.. ..+ .++|.+++-||.|...
T Consensus 93 PGHvDF~~Ev~~aLr~--~DgavlvVDaveGV~~qT~~v~~~-a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRV--LDGAVVVFCGTSGVEPQSETVWRQ-ANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CSCTTCHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHH-HHH----HTCCEEEEEECSSSTT
T ss_pred CCCcccHHHHHHHHHH--hCeEEEEEECCCCCchhHHHHHHH-HHH----cCCCeEEEEccccccC
Confidence 3788888777777776 999999999875432222333432 222 4589999999999753
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.96 E-value=0.0054 Score=36.48 Aligned_cols=45 Identities=13% Similarity=-0.069 Sum_probs=25.4
Q ss_pred cEEEEEEECCC---hhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcCC
Q psy5805 22 DVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69 (75)
Q Consensus 22 ~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~ 69 (75)
+.++++.|.+. +..+.....+...... ..+.|+++|+||+|+...
T Consensus 139 ~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 139 PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGCCH
T ss_pred ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccccc
Confidence 67777776543 3344333222211111 135799999999998653
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.69 E-value=0.009 Score=40.59 Aligned_cols=59 Identities=15% Similarity=0.039 Sum_probs=41.2
Q ss_pred cccccchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 3 SRTSCFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 3 s~~e~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
-||..|..-...-.+. +|++|+|.|...=-.-+....|. .+.. .++|.+++-||.|...
T Consensus 75 PGH~DF~~Ev~raL~~--~DgavlVVDa~~GV~~qT~~v~~-~a~~----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 75 PGHMDFLAEVYRSLSV--LDGAILLISAKDGVQAQTRILFH-ALRK----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp CCSSSTHHHHHHHHTT--CSEEECCEESSCTTCSHHHHHHH-HHHH----HTCSCEECCEECCSSS
T ss_pred CCcHHHHHHHHHHHHH--hCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCeEEEEecccccc
Confidence 4888998877777775 99999999987542222223343 3332 3478899999999754
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.50 E-value=0.02 Score=40.02 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=36.7
Q ss_pred cchhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 7 CFTNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 7 ~f~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.+..+...|... .++.+++|.|.+...+-.........+. ..+.|+++|.||+|+..
T Consensus 175 ~i~~lv~~yi~~-~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVlNKiDlv~ 231 (772)
T 3zvr_A 175 QIRDMLMQFVTK-ENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMD 231 (772)
T ss_dssp HHHHHHHHHHTS-TTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEEECTTSSC
T ss_pred HHHHHHHHHHhc-CCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEEeCcccCC
Confidence 455566666653 5899999999876432222222233332 24689999999999864
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.86 E-value=0.0044 Score=38.35 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCCeEEEEeeCCCCcCCC
Q psy5805 53 GEKAVILVANKADLERRR 70 (75)
Q Consensus 53 ~~~~~ilvgnK~Dl~~~r 70 (75)
.++++++|+||.|+...+
T Consensus 154 ~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp TTSCEEEEECCGGGSCHH
T ss_pred hcCCEEEEEEeCCCCCHH
Confidence 568999999999997543
No 208
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.61 E-value=0.18 Score=32.28 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=12.1
Q ss_pred CCcEEEEEEECCC
Q psy5805 20 HPDVFVIVYSVIE 32 (75)
Q Consensus 20 ~~~~~ilv~d~~~ 32 (75)
++|++++|+|.++
T Consensus 96 ~ad~il~VvD~~~ 108 (363)
T 1jal_A 96 ETDAIGHVVRCFE 108 (363)
T ss_dssp TCSEEEEEEECSC
T ss_pred hcCeEEEEEecCC
Confidence 6999999999986
No 209
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.028 Score=32.42 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=25.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+.+.+++|+|.++... ....+.. . .+.|+++|+||+|+..
T Consensus 129 ~~~~~i~vvd~~~~~~--~~~~~~~---~----~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD--VVEKHPE---I----FRVADLIVINKVALAE 168 (221)
T ss_dssp SCSEEEEEEEGGGCTT--HHHHCHH---H----HHTCSEEEEECGGGHH
T ss_pred ccCcEEEEEeCCCcch--hhhhhhh---h----hhcCCEEEEecccCCc
Confidence 5788999999876532 1111111 1 1368899999999853
No 210
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.79 E-value=0.0057 Score=38.55 Aligned_cols=40 Identities=30% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.+|++++|+|.+..+.+..+.. ...+.|+++|.||+|+..
T Consensus 192 ~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~ 231 (355)
T 3p32_A 192 MVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEH 231 (355)
T ss_dssp TCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGG
T ss_pred hCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcC
Confidence 5999999999876654432221 112458899999999864
No 211
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.44 E-value=0.028 Score=35.24 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.+|++++|+|.+..+.+..+..+ . .+.|.++|.||+|+..
T Consensus 169 ~aD~vl~Vvd~~~~~~~~~l~~~---~------~~~p~ivv~NK~Dl~~ 208 (341)
T 2p67_A 169 MVDCFISLQIAGGGDDLQGIKKG---L------MEVADLIVINKDDGDN 208 (341)
T ss_dssp TCSEEEEEECC------CCCCHH---H------HHHCSEEEECCCCTTC
T ss_pred hCCEEEEEEeCCccHHHHHHHHh---h------hcccCEEEEECCCCCC
Confidence 59999999998765443221110 0 1357899999999864
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.97 E-value=0.084 Score=33.26 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
.+|.+++|+|.+.......+.. .+ -..|.++|.||+|+..
T Consensus 187 ~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 187 MVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDL 226 (349)
T ss_dssp TCSEEEEEECCC---------------------CCSCSEEEECCCSGGG
T ss_pred hCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCC
Confidence 5999999999987543322211 11 2357789999999853
No 213
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=88.34 E-value=2.7 Score=26.82 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=12.0
Q ss_pred CCcEEEEEEECCC
Q psy5805 20 HPDVFVIVYSVIE 32 (75)
Q Consensus 20 ~~~~~ilv~d~~~ 32 (75)
++|++++|+|.++
T Consensus 99 ~ad~ii~VvD~~~ 111 (368)
T 2dby_A 99 EVAAIAHVLRCFP 111 (368)
T ss_dssp TCSEEEEEEECCC
T ss_pred hCCEEEEEEECCC
Confidence 6999999999986
No 214
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.42 E-value=0.21 Score=28.77 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=10.8
Q ss_pred eEEEEeeCCCCcC
Q psy5805 56 AVILVANKADLER 68 (75)
Q Consensus 56 ~~ilvgnK~Dl~~ 68 (75)
|.++|+||+|+.+
T Consensus 166 ~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 166 ADLIVINKIDLAD 178 (226)
T ss_dssp CSEEEEECGGGHH
T ss_pred CCEEEEeccccCc
Confidence 4599999999864
No 215
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=83.44 E-value=2 Score=27.59 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=28.9
Q ss_pred CCcEEEEEEECCChhH-HHHHHHHHHHHHhhc-CCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKT-FKKAEDMLKTLWDSK-YIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s-~~~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~ 67 (75)
++|++++|.|.+++-. ++.+. .++.... ...+.|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~---~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIE---KELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHH---HHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCccHHHHHHHH---HHHHHhhHhhccCChhhhhhHhhhh
Confidence 4999999999998742 22232 2333221 12456778899999964
No 216
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=75.97 E-value=1.4 Score=27.62 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=21.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
++|.+++++|....+....+..+. . ..+.+++.||+|+.
T Consensus 168 ~~d~vl~v~d~~~~~~~~~i~~~i---~------~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 168 LTDFFLVLMLPGAGDELQGIKKGI---F------ELADMIAVNKADDG 206 (337)
T ss_dssp TSSEEEEEECSCC------CCTTH---H------HHCSEEEEECCSTT
T ss_pred hCCEEEEEEcCCCcccHHHHHHHH---h------ccccEEEEEchhcc
Confidence 589999999886543322221111 1 23446666999974
No 217
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=71.96 E-value=14 Score=22.28 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEE-EEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-lvgnK~Dl 66 (75)
.+|.+|++... +..++..+...++.+.......+++++ +|.|+.+-
T Consensus 179 ~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 179 HADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp TCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 38999988754 577888888777777754333556655 89999873
No 218
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=69.75 E-value=12 Score=20.77 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=30.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcC-CCCCeEEEEeeCCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADL 66 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl 66 (75)
+|.++++...+.. + ..+....+.+..... .++.++.+|.|+.+-
T Consensus 98 ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 98 SDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp CSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 8999998876544 4 667666666665321 245677899999985
No 219
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=68.42 E-value=10 Score=19.72 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=12.8
Q ss_pred CcEEEEEEECCChhHHHHHHH
Q psy5805 21 PDVFVIVYSVIERKTFKKAED 41 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~ 41 (75)
..-++++||+++......+.+
T Consensus 2 ~M~~lV~YDI~~~kr~~kv~k 22 (101)
T 2ivy_A 2 AMLYLIFYDITDDNLRNRVAE 22 (101)
T ss_dssp CEEEEEEEEECCHHHHHHHHH
T ss_pred cEEEEEEEeCCChHHHHHHHH
Confidence 345677888876655444433
No 220
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=67.99 E-value=2.7 Score=27.25 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=13.0
Q ss_pred hhhhhccCCcEEEEEEECCChhHHHHH
Q psy5805 13 VNFVQTYHPDVFVIVYSVIERKTFKKA 39 (75)
Q Consensus 13 ~~~~~~~~~~~~ilv~d~~~~~s~~~~ 39 (75)
..+++ ++|++++|+|.++.+++.++
T Consensus 111 l~~ir--~aD~Il~VvD~~~~~~i~~v 135 (396)
T 2ohf_A 111 LSHIS--ACDGIFHLTRAFEDDDITHV 135 (396)
T ss_dssp HHHHH--TSSSEEEEEEC---------
T ss_pred HHHHH--hcCeEEEEEecCCCcchhhh
Confidence 34555 69999999999987665543
No 221
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=64.74 E-value=5.5 Score=14.96 Aligned_cols=13 Identities=8% Similarity=0.046 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHh
Q psy5805 36 FKKAEDMLKTLWD 48 (75)
Q Consensus 36 ~~~~~~~~~~~~~ 48 (75)
.+++++|++.++-
T Consensus 7 vDSV~rWmeDLr~ 19 (22)
T 3ro3_B 7 VDSVQRWMEDLKL 19 (26)
T ss_pred hHHHHHHHHHHHh
Confidence 3568899988763
No 222
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=61.40 E-value=14 Score=18.64 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=14.2
Q ss_pred cEEEEEEECCChhHHHHHHH
Q psy5805 22 DVFVIVYSVIERKTFKKAED 41 (75)
Q Consensus 22 ~~~ilv~d~~~~~s~~~~~~ 41 (75)
.-++++||+++......+.+
T Consensus 4 M~~lV~YDI~~~kr~~kv~k 23 (90)
T 1zpw_X 4 RLYAVAYDIPDDTRRVKLAN 23 (90)
T ss_dssp EEEEEEEECCCHHHHHHHHH
T ss_pred eEEEEEEeCCChHHHHHHHH
Confidence 34789999998766555544
No 223
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.73 E-value=19 Score=21.06 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=32.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+++.+.+.++.....+...++...+.+++....+++|+++-|.
T Consensus 143 ~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 143 KGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp TTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred CCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 6888888788888889999999999988743112677665443
No 224
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=57.74 E-value=26 Score=20.47 Aligned_cols=43 Identities=9% Similarity=0.021 Sum_probs=30.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+|.+|++... +..++..+....+.+... ..+.++.+|.|+..
T Consensus 166 ~aD~vivv~~~-~~~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 166 CSDYVIIPMTA-EKWAVESLDLFNFFVRKL--NLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEEES-CTTHHHHHHHHHHHHHTT--TCCCCEEEEEEEEC
T ss_pred HCCeEEEEeCC-ChHHHHHHHHHHHHHHHH--hccCCEEEEEeccc
Confidence 38999998876 466777777777666653 24567778889884
No 225
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=54.52 E-value=19 Score=19.48 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=27.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+..+|+.=|.+.++....+..+ -. ..++|++.+++|.+|.
T Consensus 40 ka~LViiA~D~~p~~~~~~i~~l----c~---~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 40 QALFVCVAEDCDQGNYVKLVKAL----CA---KNEIKYVSVPKRASLG 80 (126)
T ss_dssp CCSEEEEESSCCSTTHHHHHHHH----HH---HTTCCEEEESCSHHHH
T ss_pred CceEEEEeCCCChHHHHHHHHHH----HH---HhCCCEEEECCHHHHH
Confidence 47778888777665555444443 22 2569999999988873
No 226
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=54.30 E-value=20 Score=18.20 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=14.1
Q ss_pred CcEEEEEEECCChhHHHHHHH
Q psy5805 21 PDVFVIVYSVIERKTFKKAED 41 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~ 41 (75)
..-++++||+++...-..+.+
T Consensus 3 ~M~vlV~YDI~~~krr~kv~k 23 (91)
T 3exc_X 3 GMKLLVVYDVSDDSKRNKLAN 23 (91)
T ss_dssp -CEEEEEEECCSHHHHHHHHH
T ss_pred ceEEEEEEeCCCchHHHHHHH
Confidence 457899999998755444443
No 227
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=50.57 E-value=26 Score=18.35 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=26.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-++ .++.....+.+|+|++....+
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~----~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 51 RPDLIISDVLMPEMDGYALCR----WLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp CCSEEEEESCCSSSCHHHHHH----HHHHSTTTTTSCEEEEECCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhCCCcCCCCEEEEECCCC
Confidence 478888877777766665443 344322236789888876554
No 228
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=48.64 E-value=12 Score=23.16 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=28.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
++|.+|+.=|+++..+...+....+.+.+. +..++++|...-|.
T Consensus 79 ~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l---~~~~v~~V~GNHD~ 122 (296)
T 3rl5_A 79 YGDILLHTGDFTELGLPSEVKKFNDWLGNL---PYEYKIVIAGNHEL 122 (296)
T ss_dssp SCSEEEECSCCSSSCCHHHHHHHHHHHHTS---CCSEEEECCCTTCG
T ss_pred CCCEEEECCcccCCCCHHHHHHHHHHHHhC---CCCeEEEEcCCccc
Confidence 599999999999876666655555555542 22455555444444
No 229
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=47.03 E-value=27 Score=17.46 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-++ .+++....+++|++++....+
T Consensus 46 ~~dlvllD~~~p~~~g~~~~~----~l~~~~~~~~~pii~~s~~~~ 87 (122)
T 3gl9_A 46 TPDLIVLXIMMPVMDGFTVLK----KLQEKEEWKRIPVIVLTAKGG 87 (122)
T ss_dssp CCSEEEECSCCSSSCHHHHHH----HHHTSTTTTTSCEEEEESCCS
T ss_pred CCCEEEEeccCCCCcHHHHHH----HHHhcccccCCCEEEEecCCc
Confidence 478777777676666666443 344322235789888876554
No 230
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=45.54 E-value=29 Score=17.39 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+|+-+++.+.+.++-++. +++....+.+|++++....+.
T Consensus 47 ~~dlvi~d~~l~~~~g~~~~~~----l~~~~~~~~~pii~~s~~~~~ 89 (133)
T 3nhm_A 47 PPDVLISDVNMDGMDGYALCGH----FRSEPTLKHIPVIFVSGYAPR 89 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHH----HHHSTTTTTCCEEEEESCCC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhCCccCCCCEEEEeCCCcH
Confidence 4788887777777666654433 343222357899888776553
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=45.13 E-value=36 Score=20.44 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=24.4
Q ss_pred CcEEEEEEECCCh--hHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCcC
Q psy5805 21 PDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 68 (75)
Q Consensus 21 ~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~ 68 (75)
+++.+++.|-+.. +..+ ...+..+.. . +++++|-+|.|...
T Consensus 112 al~~lllldep~~gL~~lD--~~~l~~L~~----~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLD--LEFMKHLSK----V-VNIIPVIAKADTMT 154 (270)
T ss_dssp CCEEEEEECCCSSSCCHHH--HHHHHHHHT----T-SEEEEEETTGGGSC
T ss_pred eeeeeEEEecCCCcCCHHH--HHHHHHHHh----c-CcEEEEEeccccCC
Confidence 5778888775422 2222 222333332 3 89999999999743
No 232
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=45.09 E-value=42 Score=19.16 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 64 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~ 64 (75)
+++++.+-+ ....+...++...+.+++....+++|+++-|.-.
T Consensus 139 ~~d~v~lS~--~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~ 181 (210)
T 1y80_A 139 QPDIVGMSA--LLTTTMMNMKSTIDALIAAGLRDRVKVIVGGAPL 181 (210)
T ss_dssp CCSEEEEEC--CSGGGTHHHHHHHHHHHHTTCGGGCEEEEESTTC
T ss_pred CCCEEEEec--cccccHHHHHHHHHHHHhcCCCCCCeEEEECCCC
Confidence 577766654 4456777888888888764211357777666443
No 233
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=44.34 E-value=42 Score=18.99 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=32.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+|.+|++... +..++..+...++.+.... +.++.+|.|+.+-.
T Consensus 90 ~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 90 GCDLLVIPSTP-DALALDALMLTIETLQKLG---NNRFRILLTIIPPY 133 (209)
T ss_dssp TSSEEEEEECS-SHHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCT
T ss_pred HCCEEEEEecC-CchhHHHHHHHHHHHHhcc---CCCEEEEEEecCCc
Confidence 38998888765 5677777777777776532 45678999999864
No 234
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=43.15 E-value=34 Score=17.51 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=26.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++ .+++....+.+|+|++....+
T Consensus 52 ~~dlii~d~~l~~~~g~~~~~----~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 52 HPHLIITEANMPKISGMDLFN----SLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp CCSEEEEESCCSSSCHHHHHH----HHHTSTTTTTSCEEEEESSCC
T ss_pred CCCEEEEcCCCCCCCHHHHHH----HHHcCcccCCCCEEEEeCCCC
Confidence 478888877777666655433 344321236789988877655
No 235
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.83 E-value=40 Score=18.23 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=19.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..+.+++|- ++. +.|++.+........+.+++|-|..|
T Consensus 77 qldvvvivt--tdd------kewikdfieeakergvevfvvynnkd 114 (162)
T 2l82_A 77 QLDVVVIVT--TDD------KEWIKDFIEEAKERGVEVFVVYNNKD 114 (162)
T ss_dssp TCCEEEEEE--CCC------HHHHHHHHHHHHHTTCEEEEEEECSC
T ss_pred CCcEEEEEe--cCc------HHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 377777773 222 23555544332235676665554433
No 236
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=42.74 E-value=47 Score=21.49 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=25.1
Q ss_pred hhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhh
Q psy5805 13 VNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 49 (75)
Q Consensus 13 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~ 49 (75)
..|+. ++.|.++|+|.++. +++....|...+++.
T Consensus 115 ~~~l~--~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLS--EEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHH--TTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 34444 47888999999988 677778887777653
No 237
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=41.81 E-value=29 Score=19.33 Aligned_cols=44 Identities=5% Similarity=0.019 Sum_probs=21.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhh--cCCCCCeEEEEeeC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDS--KYIGEKAVILVANK 63 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ilvgnK 63 (75)
.+|++|+++-+=.-.--..++.|++.+... ....+.|+.++++-
T Consensus 72 ~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~ 117 (193)
T 1rtt_A 72 AADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGAS 117 (193)
T ss_dssp HCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEEC
T ss_pred hCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeC
Confidence 378888865433332223455566655431 01234566665543
No 238
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=41.44 E-value=52 Score=19.21 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=27.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEE-EEeeCCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADL 66 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-lvgnK~Dl 66 (75)
+|.+|++...+ ..+...+...++.+++ .+.+++ +|.|+.|.
T Consensus 153 aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 153 PTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred CCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 78888887654 4566666666666654 245655 88999874
No 239
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=40.73 E-value=37 Score=17.28 Aligned_cols=43 Identities=7% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+++-+.+.+.+.++-++. +++....+.+|++++....+.
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~----lr~~~~~~~~pii~~t~~~~~ 90 (136)
T 3t6k_A 48 LPDALICDVLLPGIDGYTLCKR----VRQHPLTKTLPILMLTAQGDI 90 (136)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH----HHHSGGGTTCCEEEEECTTCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHcCCCcCCccEEEEecCCCH
Confidence 4788887777777666664433 333222357888888776553
No 240
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=40.36 E-value=52 Score=18.86 Aligned_cols=17 Identities=24% Similarity=0.718 Sum_probs=14.3
Q ss_pred CCcEEEEEEECCChhHH
Q psy5805 20 HPDVFVIVYSVIERKTF 36 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~ 36 (75)
++|.++++=|+.+....
T Consensus 32 ~~D~vi~~GDl~~~~~~ 48 (260)
T 2yvt_A 32 QPDILVVVGNILKNEAL 48 (260)
T ss_dssp CCSEEEEESCCCCCHHH
T ss_pred CCCEEEECCCCCCccCc
Confidence 59999999999987543
No 241
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=40.35 E-value=35 Score=16.91 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=28.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
..|.+|+-+++.+.+.++-++. +++....+.+|++++....+..
T Consensus 47 ~~dlii~D~~l~~~~g~~~~~~----l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 47 GYDAVFIDLNLPDTSGLALVKQ----LRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp CCSEEEEESBCSSSBHHHHHHH----HHHSCCSSCCEEEEEECC-CTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhhhccCCCCEEEEECCcchh
Confidence 4788888888877777664433 4442224678998887766543
No 242
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=39.57 E-value=33 Score=17.51 Aligned_cols=42 Identities=5% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-+ ..+++....+.+|+|++....+
T Consensus 51 ~~dlii~D~~l~~~~g~~~~----~~lr~~~~~~~~pii~~s~~~~ 92 (144)
T 3kht_A 51 KYDLIILDIGLPIANGFEVM----SAVRKPGANQHTPIVILTDNVS 92 (144)
T ss_dssp CCSEEEECTTCGGGCHHHHH----HHHHSSSTTTTCCEEEEETTCC
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcccccCCCEEEEeCCCC
Confidence 46666665555544454433 3344322246789888876654
No 243
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=39.39 E-value=56 Score=18.97 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=28.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhc--CCCCCeEE-EEeeCCCCc
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSK--YIGEKAVI-LVANKADLE 67 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~i-lvgnK~Dl~ 67 (75)
+|.+|++...+ ..++..+....+.+.... ..++.+++ +|.|+.+-.
T Consensus 134 aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 134 AEGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp CSEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 89999998764 456665555444443321 13466764 889998753
No 244
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.53 E-value=37 Score=16.93 Aligned_cols=42 Identities=7% Similarity=0.264 Sum_probs=25.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..+.+++-+++.+.+.++-++. +++....+.+|++++....+
T Consensus 55 ~~dlvi~d~~~~~~~g~~~~~~----l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREVLAE----IKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp CCSEEEECSSCSSSCHHHHHHH----HHHSTTGGGSCEEEEESCCC
T ss_pred CCcEEEEecCCCcccHHHHHHH----HHcCcccccccEEEEecCCc
Confidence 3677777777766666654433 33321125688888877654
No 245
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=38.29 E-value=26 Score=17.76 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-++ .+++....+.+|++++....+
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~----~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 50 PYAAMTVDLNLPDQDGVSLIR----ALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp CCSEEEECSCCSSSCHHHHHH----HHHTSGGGTTCEEEEECTTHH
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhCcccCCCCEEEEecCCC
Confidence 478888777777766665443 334321236789888876543
No 246
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=37.91 E-value=56 Score=18.58 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=27.8
Q ss_pred hhhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 9 TNLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 9 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
..+.+.... +|++|++.-+=+-.---.++.|++.+... ...+.|++++++
T Consensus 77 ~~~~~~i~~---AD~ivi~sP~Y~~~~~~~lK~~iD~~~~~-~l~gK~~~~v~t 126 (191)
T 3k1y_A 77 EEITSALSA---SDGLVVATPVFKASYTGLFKMFFDILDTD-ALTGMPTIIAAT 126 (191)
T ss_dssp HHHHHHHHH---CSEEEEEEECBTTBSCHHHHHHHHHSCTT-TTTTCEEEEEEE
T ss_pred HHHHHHHHH---CCEEEEEcCccCCcCcHHHHHHHHHhhhh-hcCCCEEEEEEe
Confidence 344444444 99999976554443334455666555421 235567666655
No 247
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=37.80 E-value=50 Score=21.58 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 30 VIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 30 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+|.++.+..+..+...++......+.|+|++|.
T Consensus 103 Lt~eQALaD~a~fi~~~k~~~~~~~~pwI~~GG 135 (472)
T 4ebb_A 103 LTVEQALADFAELLRALRRDLGAQDAPAIAFGG 135 (472)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCCCEEEEcc
Confidence 455677777777777777654456789999884
No 248
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=37.64 E-value=57 Score=18.51 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=33.0
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
+|.++++... +..++..+....+.+.... .+...+.+|.|+.+-.
T Consensus 141 ad~viiv~~~-~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 141 LDELCIVTTP-SLQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTN 185 (245)
T ss_dssp CSEEEEEECS-SHHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSC
T ss_pred CCEEEEEecC-cHHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCC
Confidence 8999998765 5788888888887777532 2234577888998854
No 249
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=37.54 E-value=44 Score=17.23 Aligned_cols=42 Identities=5% Similarity=0.128 Sum_probs=26.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-++. +++....+++|++++....+
T Consensus 59 ~~dliilD~~l~~~~g~~~~~~----lr~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 59 RAQLVLLDLNLPDMTGIDILKL----VKENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp CBEEEEECSBCSSSBHHHHHHH----HHHSTTTTTSCEEEEESCCC
T ss_pred CCCEEEEeCCCCCCcHHHHHHH----HHhcccccCCCEEEEecCCC
Confidence 3677777777777666664433 34322246788888876655
No 250
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=37.48 E-value=50 Score=20.89 Aligned_cols=27 Identities=7% Similarity=0.112 Sum_probs=16.7
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHH
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLW 47 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~ 47 (75)
.+..++..-.++..||..+......++
T Consensus 309 ~~~~~~~vpySeHss~~EL~~fv~~l~ 335 (367)
T 4b87_A 309 GNISIYGIPYSEHSSYLEMKRFVQWLK 335 (367)
T ss_dssp TTEEEEEECCCSSCCHHHHHHHHHHHC
T ss_pred CceEEEEEeccCCCCHHHHHHHHHhcC
Confidence 344555555667777777777665553
No 251
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=37.18 E-value=32 Score=18.29 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=25.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+..+++.-|.+..+-...+ ..+.+ ..++|++.+++|.+|.
T Consensus 41 ka~LVvIA~D~~p~~i~~~l----~~lC~---~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 41 KAKLVLIANDVDPIELVVFL----PALCK---KMGVPYAIVKGKARLG 81 (113)
T ss_dssp CCSEEEECSCCSSHHHHTTH----HHHHH---HTTCCCEECSCSTTTH
T ss_pred CceEEEEeCCCCHHHHHHHH----HHHHH---HcCCCEEEECCHHHHH
Confidence 46777777777644322323 23332 2568999999999984
No 252
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=36.75 E-value=16 Score=22.74 Aligned_cols=11 Identities=36% Similarity=0.141 Sum_probs=9.4
Q ss_pred CCCeEEEEeeC
Q psy5805 53 GEKAVILVANK 63 (75)
Q Consensus 53 ~~~~~ilvgnK 63 (75)
.++|+|.|||=
T Consensus 34 ~~vPVI~VGNi 44 (315)
T 4ehx_A 34 LPVPVISVGNL 44 (315)
T ss_dssp CSSCEEEEEES
T ss_pred CCCCEEEECCE
Confidence 47899999994
No 253
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=36.61 E-value=89 Score=20.82 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeE-EEEeeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ilvgnK~Dl~~ 68 (75)
.++.+++|.|.+....-.. ....+.. .+|+ .+|.||.|...
T Consensus 213 ~pd~vllVvDa~~g~~~~~---~a~~~~~-----~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACEA---QAKAFKD-----KVDVASVIVTKLDGHA 254 (504)
T ss_dssp CCSEEEEEEETTCCTTHHH---HHHHHHH-----HHCCCCEEEECTTSCC
T ss_pred cCceEEEEEeccccccHHH---HHHHHHh-----hcCceEEEEeCCcccc
Confidence 4899999999876433111 1222222 1464 78899999863
No 254
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=36.58 E-value=58 Score=18.30 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=24.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhh---------cCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDS---------KYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~---------~~~~~~~~ilvgn 62 (75)
.+|++|++.-+=+-.---.++.|++.+... ....+.|++++++
T Consensus 67 ~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t 118 (192)
T 3fvw_A 67 EADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSV 118 (192)
T ss_dssp HCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEE
T ss_pred hCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEe
Confidence 399999986544443334456677766531 1134556666654
No 255
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=36.38 E-value=46 Score=17.16 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=10.0
Q ss_pred cEEEEEEECCCh
Q psy5805 22 DVFVIVYSVIER 33 (75)
Q Consensus 22 ~~~ilv~d~~~~ 33 (75)
.-++++||+.+.
T Consensus 8 M~vlV~YDI~~~ 19 (103)
T 3oq2_A 8 MLVLISYDVSFE 19 (103)
T ss_dssp EEEEEEEECCTT
T ss_pred EEEEEEEECCCC
Confidence 578899999875
No 256
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=35.64 E-value=44 Score=19.10 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=23.8
Q ss_pred CCcEEEEE---EECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIV---YSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv---~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
.+|++|++ |.-+=+..|.+.-.|+........-.+.|+.+++.
T Consensus 67 ~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~ 112 (190)
T 3u7r_A 67 HSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGT 112 (190)
T ss_dssp TSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEE
T ss_pred hCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEe
Confidence 49999996 33344456677666753211111124567777653
No 257
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=35.60 E-value=46 Score=16.83 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=23.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+.+|+-+++.+.+.++-++ .+++....+.+|++++....+
T Consensus 60 ~dlii~D~~l~~~~g~~~~~----~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 60 PKLILLDINIPKMNGIEFLK----ELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHH----HHTTSGGGTTCEEEEEESCCC
T ss_pred CCEEEEecCCCCCCHHHHHH----HHHcCccccCCcEEEEeCCCC
Confidence 67777766665555554332 333321125789988877655
No 258
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=34.09 E-value=48 Score=16.65 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=25.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..+.+++-+++.+.+.++-++ .+++....+.+|++++....+.
T Consensus 54 ~~dlii~d~~l~~~~g~~~~~----~l~~~~~~~~~~ii~~s~~~~~ 96 (143)
T 3cnb_A 54 KPDVVMLDLMMVGMDGFSICH----RIKSTPATANIIVIAMTGALTD 96 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHH----HHHTSTTTTTSEEEEEESSCCH
T ss_pred CCCEEEEecccCCCcHHHHHH----HHHhCccccCCcEEEEeCCCCH
Confidence 467777766666655554333 3343212367899988776553
No 259
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=34.07 E-value=89 Score=19.71 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=25.3
Q ss_pred CCcEEEEEEECCCh---hHHHHHHHHHHHHHhhcCCCCCeEEEE-eeC
Q psy5805 20 HPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKAVILV-ANK 63 (75)
Q Consensus 20 ~~~~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~ilv-gnK 63 (75)
++|.+|+.=|+.+. .++..+..++..+.. .++|+++| ||-
T Consensus 92 ~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~----~~~~~~~v~GNH 135 (443)
T 2xmo_A 92 KTDVLIISGDLTNNGEKTSHEELAKKLTQVEK----NGTQVFVVPGNH 135 (443)
T ss_dssp TCSEEEEESCCBSSCCHHHHHHHHHHHHHHHH----TTCEEEEECCTT
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHh----CCCeEEEECCcC
Confidence 68999999998764 344544445544432 34687666 663
No 260
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=34.03 E-value=41 Score=18.88 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=23.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
.+|++|++.-+=+-.--..++.|++.+... ...+.|++++++
T Consensus 69 ~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~-~~~gK~~~~~~t 110 (197)
T 2vzf_A 69 NADGLIVATPIYKASYTGLLKAFLDILPQF-ALAGKAALPLAT 110 (197)
T ss_dssp HCSEEEEEEECBTTBCCHHHHHHHTTSCTT-TTTTCEEEEEEE
T ss_pred HCCEEEEEeCccCCCCCHHHHHHHHhcccc-ccCCCEEEEEEE
Confidence 388888887655443233445555444321 234567666665
No 261
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=33.97 E-value=76 Score=18.91 Aligned_cols=42 Identities=10% Similarity=0.052 Sum_probs=27.0
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEE-EEeeCCCCc
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLE 67 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-lvgnK~Dl~ 67 (75)
+|++|+|.... ..+...+....+.+.+ .+.+++ +|.|+.|..
T Consensus 215 aD~vilVv~~~-~~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 215 TGNVVYVVNSE-NNNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCEEEEEEETT-SCCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCEEEEEEeCC-CCcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 78888887754 4455566665555554 235554 888999864
No 262
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=33.88 E-value=49 Score=16.71 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=20.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+|+-+.+.+.+.++-+ ..+++....+.+|++++....+.
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~----~~l~~~~~~~~~~ii~~s~~~~~ 88 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLC----LKLKRSKGLKNVPLILLFSSEHK 88 (140)
T ss_dssp CCSEEEEETTC------CHH----HHHHTSTTCTTCCEEEEECC---
T ss_pred CCCEEEEeCCCCCCcHHHHH----HHHHcCcccCCCCEEEEecCCCH
Confidence 46777776666555544433 33444222267898888776554
No 263
>3sf4_D Protein inscuteable homolog; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=33.60 E-value=26 Score=15.94 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHh
Q psy5805 37 KKAEDMLKTLWD 48 (75)
Q Consensus 37 ~~~~~~~~~~~~ 48 (75)
+++++|++.++.
T Consensus 9 DSVqrWmeDLr~ 20 (52)
T 3sf4_D 9 DSVQRWMEDLKL 20 (52)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 568899999975
No 264
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=33.54 E-value=52 Score=16.84 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCcEEEEEEECCChhHHHH--HHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
++|+++++..+-.-.-... ++.+++.+.. ...+.++.++++
T Consensus 46 ~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t 88 (137)
T 2fz5_A 46 SKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGS 88 (137)
T ss_dssp TCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEE
T ss_pred cCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEe
Confidence 4788888766542221111 4555555443 235567766665
No 265
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=32.34 E-value=72 Score=18.15 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=22.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhh--cCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDS--KYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ilvgn 62 (75)
.+|++|++.-.=+..---.++.|++.+... ....+.|+.++++
T Consensus 73 ~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~t 117 (199)
T 4hs4_A 73 TADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTA 117 (199)
T ss_dssp HSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEE
T ss_pred hCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEe
Confidence 389999875443332222345555555431 1234567766655
No 266
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=32.22 E-value=53 Score=19.56 Aligned_cols=42 Identities=10% Similarity=-0.097 Sum_probs=22.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhh----cCCCCCeEEEEee
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDS----KYIGEKAVILVAN 62 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~~~ilvgn 62 (75)
+|++|++.-.=+-.---.++.|++.+... ....+.|+.++++
T Consensus 99 AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~t 144 (247)
T 2q62_A 99 SEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQV 144 (247)
T ss_dssp CSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEE
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEe
Confidence 88888876555443334455555544321 1123556666654
No 267
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=31.62 E-value=79 Score=19.98 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCcEEEEEEECCChh----------HHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERK----------TFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
+...++.+|+|.+++ +.+.=+.|+..+.... .+.++++|
T Consensus 89 g~~pvlVvY~lP~RDC~a~ssgG~~~~~~Yk~~Id~ia~~i--~~~~~vvI 137 (315)
T 1uoz_A 89 GAMPVLTLYGIPHRDCGSYASGGFATGTDYRGWIDAVASGL--GSSPATII 137 (315)
T ss_dssp TCBCEEEECCCTTBGGGSTTCBCCSSHHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCcEEEEeCCCCCCchhhccCCCCCHHHHHHHHHHHHHHh--CCCceEEE
Confidence 455678999999887 5655578888877643 34455544
No 268
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=31.61 E-value=42 Score=16.69 Aligned_cols=9 Identities=44% Similarity=0.600 Sum_probs=7.0
Q ss_pred EEEEEECCC
Q psy5805 24 FVIVYSVIE 32 (75)
Q Consensus 24 ~ilv~d~~~ 32 (75)
++++||+++
T Consensus 3 vlv~YDI~~ 11 (85)
T 2i0x_A 3 IVVVYDVGV 11 (85)
T ss_dssp EEEEEECCS
T ss_pred EEEEeeCCh
Confidence 677888876
No 269
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=31.46 E-value=55 Score=16.49 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+|+-+++.+.+.++-++ .+++....+.+|+|++....+.
T Consensus 51 ~~dlii~d~~l~~~~g~~~~~----~l~~~~~~~~~pii~~s~~~~~ 93 (142)
T 3cg4_A 51 FSGVVLLDIMMPGMDGWDTIR----AILDNSLEQGIAIVMLTAKNAP 93 (142)
T ss_dssp CCEEEEEESCCSSSCHHHHHH----HHHHTTCCTTEEEEEEECTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhhcccCCCCEEEEECCCCH
Confidence 356666666666655555433 3333212367899988877654
No 270
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=30.96 E-value=59 Score=16.71 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=17.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..+.+|+-+++.+.+.++-++ .+++. .+.+|+|++....+
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~----~l~~~--~~~~~ii~ls~~~~ 89 (154)
T 2qsj_A 50 TVDLILLDVNLPDAEAIDGLV----RLKRF--DPSNAVALISGETD 89 (154)
T ss_dssp CCSEEEECC------CHHHHH----HHHHH--CTTSEEEEC-----
T ss_pred CCCEEEEeCCCCCCchHHHHH----HHHHh--CCCCeEEEEeCCCC
Confidence 367777777666655554433 33332 35789888876554
No 271
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=30.78 E-value=55 Score=16.28 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=24.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+++-+++.+.+.++-++. +++ ..+++|++++....+.
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~----l~~--~~~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLET----LRK--RQYSGIIIIVSAKNDH 86 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHH----HHH--TTCCSEEEEEECC---
T ss_pred CCCEEEEecCCCCCChHHHHHH----HHh--cCCCCeEEEEeCCCCh
Confidence 4788887777766666654433 343 2367898888776653
No 272
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=30.28 E-value=56 Score=16.27 Aligned_cols=41 Identities=10% Similarity=0.240 Sum_probs=23.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+.+++-+.+.+.+.++-++ .+++....+.+|++++....+
T Consensus 52 ~dlvi~D~~~p~~~g~~~~~----~lr~~~~~~~~pii~~s~~~~ 92 (129)
T 3h1g_A 52 TKVLITDWNMPEMNGLDLVK----KVRSDSRFKEIPIIMITAEGG 92 (129)
T ss_dssp CCEEEECSCCSSSCHHHHHH----HHHTSTTCTTCCEEEEESCCS
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHhcCCCCCCeEEEEeCCCC
Confidence 56666655565656665443 334322235789888876554
No 273
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=30.22 E-value=96 Score=18.97 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=27.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.+-+.+..++..+-+. .++|+++.
T Consensus 107 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 144 (301)
T 1xky_A 107 GVDAVMLVAPYYNKPSQEGMYQHFKAIAES---TPLPVMLY 144 (301)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999886555555667887788777652 36888875
No 274
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.92 E-value=59 Score=16.39 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+. +.+.++-++. +++....+.+|++++....+
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~----l~~~~~~~~~~ii~ls~~~~ 92 (140)
T 3lua_A 50 SITLIIMDIAFPVEKEGLEVLSA----IRNNSRTANTPVIIATKSDN 92 (140)
T ss_dssp CCSEEEECSCSSSHHHHHHHHHH----HHHSGGGTTCCEEEEESCCC
T ss_pred CCcEEEEeCCCCCCCcHHHHHHH----HHhCcccCCCCEEEEeCCCC
Confidence 367777766666 5555554433 33311236788888876654
No 275
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=29.46 E-value=64 Score=16.64 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..+.+|+-+++.+.+.++-+.. ++.. .+.+|++++....+
T Consensus 47 ~~dliild~~l~~~~g~~~~~~----l~~~--~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 47 FAGIVISDIRMPGMDGLALFRK----ILAL--DPDLPMILVTGHGD 86 (155)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH----HHHH--CTTSCEEEEECGGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhh--CCCCCEEEEECCCC
Confidence 4677777777766666554333 3332 36789988877655
No 276
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=29.23 E-value=94 Score=19.02 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+.. +++|+++.
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~--~~lPiilY 144 (303)
T 2wkj_A 106 GFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA--DGLPMVVY 144 (303)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCEEEecCCCCCCCCHHHHHHHHHHHHHhC--CCCCEEEE
Confidence 8999998755444556777877887776532 34888875
No 277
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=29.08 E-value=57 Score=18.87 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=20.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|+.- . +..... ..++.+.. .++|+|+++...+
T Consensus 64 ~vdgiI~~~-~-~~~~~~---~~~~~~~~----~~iPvV~~~~~~~ 100 (293)
T 3l6u_A 64 KVDAIFITT-L-DDVYIG---SAIEEAKK----AGIPVFAIDRMIR 100 (293)
T ss_dssp TCSEEEEEC-S-CTTTTH---HHHHHHHH----TTCCEEEESSCCC
T ss_pred CCCEEEEec-C-ChHHHH---HHHHHHHH----cCCCEEEecCCCC
Confidence 688888753 2 222221 12233332 4689999887655
No 278
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=29.06 E-value=29 Score=18.42 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=25.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+..+|+.=|.+..+....+.. +.+ ..++|++.+++|.+|.
T Consensus 36 kakLViiA~D~~~~~~~~~l~~----lc~---~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 36 EKGLVVIAGDIWPADVISHIPV----LCE---DHSVPYIFIPSKQDLG 76 (121)
T ss_dssp CCCEEEECTTCSCTTHHHHHHH----HHH---HTCCCEEECCCHHHHH
T ss_pred CceEEEEeCCCCHHHHHHHHHH----HHH---hcCCcEEEECCHHHHH
Confidence 3666777666665443343333 222 2568999999888873
No 279
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.00 E-value=65 Score=16.55 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=26.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-++. +++. .+.+|++++....|
T Consensus 61 ~~dlii~d~~l~~~~g~~~~~~----l~~~--~~~~~ii~~s~~~~ 100 (152)
T 3eul_A 61 LPDVALLDYRMPGMDGAQVAAA----VRSY--ELPTRVLLISAHDE 100 (152)
T ss_dssp CCSEEEEETTCSSSCHHHHHHH----HHHT--TCSCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHhc--CCCCeEEEEEccCC
Confidence 4788888777777666654433 3432 36788888877655
No 280
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.67 E-value=1e+02 Score=18.94 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=27.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..|+..+-+ ..++|+++.
T Consensus 107 Gadavlv~~P~y~~~s~~~l~~~f~~va~---a~~lPiilY 144 (306)
T 1o5k_A 107 GANGVLVVTPYYNKPTQEGLYQHYKYISE---RTDLGIVVY 144 (306)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHT---TCSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHH---hCCCCEEEE
Confidence 89999987554445566778778877765 246888875
No 281
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.62 E-value=60 Score=16.06 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+|+-+++.+.+.++-++ .+++ ..+.+|++++....+.
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~----~l~~--~~~~~~ii~~t~~~~~ 91 (130)
T 3eod_A 51 TPDLMICDIAMPRMNGLKLLE----HIRN--RGDQTPVLVISATENM 91 (130)
T ss_dssp CCSEEEECCC-----CHHHHH----HHHH--TTCCCCEEEEECCCCH
T ss_pred CCCEEEEecCCCCCCHHHHHH----HHHh--cCCCCCEEEEEcCCCH
Confidence 467777766666655555443 3343 2367888888766553
No 282
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=28.39 E-value=62 Score=16.16 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=23.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
.|.+|+-+++.+.+.++-+ ..+++.. .+.+|++++....+.
T Consensus 53 ~dlvi~D~~l~~~~g~~~~----~~l~~~~-~~~~~ii~~s~~~~~ 93 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLI----RTIRASE-RAALSIIVVSGDTDV 93 (136)
T ss_dssp EEEEEECSCCSSSCHHHHH----HHHHTST-TTTCEEEEEESSCCH
T ss_pred CcEEEEeccCCCCCHHHHH----HHHHhcC-CCCCCEEEEeCCCCh
Confidence 4555555555555555533 3344421 367898888776653
No 283
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.77 E-value=98 Score=18.92 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA 61 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvg 61 (75)
|+|+++++--.-.+.+-+.+..|+..+-+. .++|+++.-
T Consensus 99 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilYn 137 (300)
T 3eb2_A 99 GADGILAILEAYFPLKDAQIESYFRAIADA---VEIPVVIYT 137 (300)
T ss_dssp TCSEEEEEECCSSCCCHHHHHHHHHHHHHH---CSSCEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHH---CCCCEEEEE
Confidence 899999986555555677787888877663 348888753
No 284
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=27.77 E-value=1.1e+02 Score=18.64 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=27.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..|+..+-+ ..++|+++.
T Consensus 96 Gadavlv~~P~y~~~s~~~l~~~f~~ia~---a~~lPiilY 133 (292)
T 2ojp_A 96 GIVGCLTVTPYYNRPSQEGLYQHFKAIAE---HTDLPQILY 133 (292)
T ss_dssp SCSEEEEECCCSSCCCHHHHHHHHHHHHT---TCSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHH---hcCCCEEEE
Confidence 89999987555445566778778777765 236888875
No 285
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=27.61 E-value=31 Score=19.13 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=17.1
Q ss_pred EEEEEECCChhHHHHHHHHH
Q psy5805 24 FVIVYSVIERKTFKKAEDML 43 (75)
Q Consensus 24 ~ilv~d~~~~~s~~~~~~~~ 43 (75)
=+.+-|++++..+..++.|-
T Consensus 99 G~~iPDLtd~~nvk~Lr~W~ 118 (144)
T 2kkm_A 99 GFLCPDLSDAKNMEFLRNWN 118 (144)
T ss_dssp TEEEECSCCHHHHHHHHTCS
T ss_pred CccCCCCCCHHHHHHHHHcC
Confidence 35678999999999999993
No 286
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=27.22 E-value=70 Score=16.37 Aligned_cols=44 Identities=5% Similarity=0.083 Sum_probs=26.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-++... .... ...+.+|++++....+
T Consensus 58 ~~dlvl~D~~mp~~~g~~~~~~lr-~~~~-~~~~~~pii~~s~~~~ 101 (143)
T 3m6m_D 58 DYDAVIVDLHMPGMNGLDMLKQLR-VMQA-SGMRYTPVVVLSADVT 101 (143)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHH-HHHH-TTCCCCCEEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hchh-ccCCCCeEEEEeCCCC
Confidence 478888877777777766554432 2221 1235678888776544
No 287
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=27.16 E-value=1.1e+02 Score=19.10 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++.
T Consensus 126 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilY 163 (343)
T 2v9d_A 126 GADGIVVINPYYWKVSEANLIRYFEQVADS---VTLPVMLY 163 (343)
T ss_dssp TCSEEEEECCSSSCCCHHHHHHHHHHHHHT---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999886554455677787787777652 36888875
No 288
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=26.89 E-value=37 Score=18.54 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=19.4
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA 61 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvg 61 (75)
+|++|++.-.=+-.--..++.|++.+.... ..+.|+.+++
T Consensus 64 aD~ii~~tP~y~~~~p~~lk~~lD~l~~~~-~~gK~~~~~~ 103 (174)
T 3gfs_A 64 ADAIVLLSPEYHSGMSGALKNALDFLSSEQ-FKYKPVALLA 103 (174)
T ss_dssp CSSEEEEEECSSSSCCHHHHHHHHTCCHHH-HTTCEEEEEE
T ss_pred CCEEEEEcCCcCCCCCHHHHHHHHHhCHhh-hCCCcEEEEE
Confidence 788887765544433334444544332111 1344555554
No 289
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.86 E-value=67 Score=16.04 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=25.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++ .+++. .+.+|++++....+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~----~l~~~--~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLD----RIKAG--GAKPYVIVISAFSE 90 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHH----HHHHT--TCCCEEEECCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHhc--CCCCcEEEEecCcC
Confidence 478887777777666665443 34432 36788888876655
No 290
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=26.75 E-value=92 Score=17.57 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=25.6
Q ss_pred hhhhhhhhccCCcEEEEEEECCChhHHHHHHHHHHHHHhh--cCCCCCeEEEEee
Q psy5805 10 NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS--KYIGEKAVILVAN 62 (75)
Q Consensus 10 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ilvgn 62 (75)
.+.+.... +|++|++.-.=+..---.++.|++.+... ....+.|+.++++
T Consensus 65 ~l~~~i~~---AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~ 116 (193)
T 3svl_A 65 ALAEQIRQ---ADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTS 116 (193)
T ss_dssp HHHHHHHH---SSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEE
T ss_pred HHHHHHHH---CCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEe
Confidence 34444444 89999876544433223344455444431 1234567666654
No 291
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.73 E-value=60 Score=15.40 Aligned_cols=43 Identities=9% Similarity=0.199 Sum_probs=25.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..+.+++-+++.+.+.++-++ .+++....+.+|++++....+.
T Consensus 45 ~~dlii~d~~~~~~~~~~~~~----~l~~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 45 QPIVILMAWPPPDQSCLLLLQ----HLREHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp CCSEEEEECSTTCCTHHHHHH----HHHHTCCCSSCCCEEEESSCCS
T ss_pred CCCEEEEecCCCCCCHHHHHH----HHHhccccCCCCEEEEeCCCCc
Confidence 467777776666655554333 3333221257888888776553
No 292
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.67 E-value=49 Score=19.52 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=20.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|+.-. +...+. ..++.+.+ .++|+|++++..+
T Consensus 58 ~vdgiIi~~~--~~~~~~---~~~~~~~~----~~iPvV~~~~~~~ 94 (313)
T 3m9w_A 58 GVDVLVIIPY--NGQVLS---NVVKEAKQ----EGIKVLAYDRMIN 94 (313)
T ss_dssp TCSEEEEECS--STTSCH---HHHHHHHT----TTCEEEEESSCCT
T ss_pred CCCEEEEeCC--ChhhhH---HHHHHHHH----CCCeEEEECCcCC
Confidence 5888887632 222211 12223332 5789999987654
No 293
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=26.61 E-value=64 Score=16.23 Aligned_cols=41 Identities=7% Similarity=0.212 Sum_probs=23.6
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+.+++-+++.+.+.++-++ .+++....+.+|+|++....+
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~----~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQ----EIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHH----HHTTSTTGGGSCEEEEESCCC
T ss_pred CcEEEEECCCCCCCHHHHHH----HHHhCcccCCCeEEEEeCCCC
Confidence 67777766666655554333 334321125688888876554
No 294
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=26.45 E-value=64 Score=15.69 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-++ .+++....+.+|++++....+
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~----~l~~~~~~~~~~ii~~s~~~~ 86 (124)
T 1mb3_A 45 KPDLILMDIQLPEISGLEVTK----WLKEDDDLAHIPVVAVTAFAM 86 (124)
T ss_dssp CCSEEEEESBCSSSBHHHHHH----HHHHSTTTTTSCEEEEC----
T ss_pred CCCEEEEeCCCCCCCHHHHHH----HHHcCccccCCcEEEEECCCC
Confidence 478888877777766665433 333322235688888766544
No 295
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=26.30 E-value=93 Score=17.48 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=28.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+|.++++... +..++..+....+.+.... -..+.+|.|+.+
T Consensus 153 ~aD~viiv~~~-~~~s~~~~~~~~~~~~~~~---~~~~~~v~N~~~ 194 (254)
T 3kjh_A 153 AVDMMIAVIEP-NLNSIKTGLNIEKLAGDLG---IKKVRYVINKVR 194 (254)
T ss_dssp TCSEEEEEECS-SHHHHHHHHHHHHHHHHHT---CSCEEEEEEEEC
T ss_pred HCCEEEEecCC-CHHHHHHHHHHHHHHHHcC---CccEEEEEeCCC
Confidence 38999998865 5777777777666554432 235678889887
No 296
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=26.26 E-value=66 Score=15.73 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=25.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-+ ..+++....+.+|++++....+
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~----~~l~~~~~~~~~~ii~~s~~~~ 87 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFI----KHLRRESMTRDIPVVMLTARGE 87 (127)
T ss_dssp CCSEEEEESEETTEEHHHHH----HHHHTSTTTTTSCEEEEEETTH
T ss_pred CCCEEEEecCCCCCCHHHHH----HHHHhCcccCCCCEEEEeCCCC
Confidence 46777777776666665433 3344322225789888876654
No 297
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.24 E-value=71 Score=16.10 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 66 (75)
..|.+|+-+.+.+.+.++-++. +++. .+.+|++++....+.
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~~~----l~~~--~~~~~ii~ls~~~~~ 89 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDILRE----IKKI--TPHMAVIILTGHGDL 89 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHHHH----HHHH--CTTCEEEEEECTTCH
T ss_pred CCCEEEEeCCCCCCcHHHHHHH----HHHh--CCCCeEEEEECCCCH
Confidence 4788888877777666664433 3332 367899888776653
No 298
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=26.15 E-value=1.2e+02 Score=18.65 Aligned_cols=38 Identities=11% Similarity=0.160 Sum_probs=27.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.|-+.+..|+..+-+. .++|+++.
T Consensus 110 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 147 (304)
T 3l21_A 110 GAHGLLVVTPYYSKPPQRGLQAHFTAVADA---TELPMLLY 147 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTS---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999985443445667787787777652 37898876
No 299
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=25.65 E-value=76 Score=16.27 Aligned_cols=41 Identities=5% Similarity=0.215 Sum_probs=24.3
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.|.+++-+.+.+.+.++-++. +++....+.+|++++....+
T Consensus 62 ~dlillD~~lp~~~g~~l~~~----l~~~~~~~~~piiils~~~~ 102 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAE----IKQNPDLKRIPVVVLTTSHN 102 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHH----HHHCTTTTTSCEEEEESCCC
T ss_pred CCEEEEeCCCCCCcHHHHHHH----HHhCcCcCCCeEEEEECCCC
Confidence 677777666666566654433 33321225789888877654
No 300
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=25.64 E-value=77 Score=16.34 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCcEEEEEEECCChhHHH--HHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+.|+++++...-...-+. .+..+++.+... ..+.++.++|+
T Consensus 45 ~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t 87 (138)
T 5nul_A 45 NEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGS 87 (138)
T ss_dssp TCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEE
T ss_pred hCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEe
Confidence 478888887654332121 345555555432 35567777765
No 301
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.61 E-value=1e+02 Score=17.74 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=19.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|++-.-.+.. .++.+.. .++|+|++++..+
T Consensus 69 ~vdgiIi~~~~~~~~-------~~~~l~~----~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 69 QIGGIILLYSRENDR-------IIQYLHE----QNFPFVLIGKPYD 103 (292)
T ss_dssp CCCEEEESCCBTTCH-------HHHHHHH----TTCCEEEESCCSS
T ss_pred CCCEEEEeCCCCChH-------HHHHHHH----CCCCEEEECCCCC
Confidence 688888753222211 2223332 4689999887654
No 302
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.58 E-value=1.1e+02 Score=17.94 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=20.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|++-.-.+.. .+..+.. .++|+|++++..+
T Consensus 83 ~vdgiIi~~~~~~~~-------~~~~l~~----~~iPvV~i~~~~~ 117 (305)
T 3huu_A 83 SVDGFILLYSLKDDP-------IEHLLNE----FKVPYLIVGKSLN 117 (305)
T ss_dssp CCSEEEESSCBTTCH-------HHHHHHH----TTCCEEEESCCCS
T ss_pred CCCEEEEeCCcCCcH-------HHHHHHH----cCCCEEEECCCCc
Confidence 689988753222211 2223332 4689999988764
No 303
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=25.38 E-value=72 Score=15.90 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=24.1
Q ss_pred CCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++. +.+.++-++. ++.. +.+|+|++....+
T Consensus 54 ~~dlii~d~~~~~~~~g~~~~~~----l~~~---~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 54 RPDIALVDIMLCGALDGVETAAR----LAAG---CNLPIIFITSSQD 93 (140)
T ss_dssp CCSEEEEESSCCSSSCHHHHHHH----HHHH---SCCCEEEEECCCC
T ss_pred CCCEEEEecCCCCCCCHHHHHHH----HHhC---CCCCEEEEecCCC
Confidence 478888777775 4555554433 3332 4678888876655
No 304
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.06 E-value=78 Score=16.20 Aligned_cols=40 Identities=13% Similarity=0.105 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++ .+++. .+++|++++....+
T Consensus 66 ~~dlii~D~~l~~~~g~~~~~----~l~~~--~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 66 SVDIAILDVEMPVKTGLEVLE----WIRSE--KLETKVVVVTTFKR 105 (150)
T ss_dssp CCSEEEECSSCSSSCHHHHHH----HHHHT--TCSCEEEEEESCCC
T ss_pred CCCEEEEeCCCCCCcHHHHHH----HHHHh--CCCCeEEEEeCCCC
Confidence 467777777766666655443 33432 36789888877655
No 305
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=24.94 E-value=80 Score=16.28 Aligned_cols=13 Identities=23% Similarity=0.304 Sum_probs=9.9
Q ss_pred CcEEEEEEECCCh
Q psy5805 21 PDVFVIVYSVIER 33 (75)
Q Consensus 21 ~~~~ilv~d~~~~ 33 (75)
..-+|++||+++.
T Consensus 4 mM~vlv~YDI~~~ 16 (100)
T 4es1_A 4 MMLVLITYDVQTS 16 (100)
T ss_dssp CEEEEEEEECCTT
T ss_pred eEEEEEEEECCCC
Confidence 4567889999874
No 306
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=24.87 E-value=33 Score=16.83 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=12.5
Q ss_pred CCCeEEEEeeCCCCc
Q psy5805 53 GEKAVILVANKADLE 67 (75)
Q Consensus 53 ~~~~~ilvgnK~Dl~ 67 (75)
.++|++.+.+|.+|.
T Consensus 52 ~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 52 QGISVSMVESMKKLG 66 (82)
T ss_dssp HTCCEEEESCHHHHH
T ss_pred cCCCEEEECCHHHHH
Confidence 468999999998874
No 307
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=24.80 E-value=99 Score=18.79 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++.
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 132 (294)
T 2ehh_A 95 GADGALVVVPYYNKPTQRGLYEHFKTVAQE---VDIPIIIY 132 (294)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999875554455777787787777653 35788775
No 308
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=24.80 E-value=1e+02 Score=18.75 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+ .+-+.+..|+..+-+. .++|+++.
T Consensus 91 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 129 (293)
T 1w3i_A 91 DIVGIASYAPYYYPRMSEKHLVKYFKTLCEV---SPHPVYLY 129 (293)
T ss_dssp CCSEEEEECCCSCSSCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh---CCCCEEEE
Confidence 89999997655455 5777787788777653 35788775
No 309
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=24.68 E-value=97 Score=18.76 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=27.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++.
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (289)
T 2yxg_A 95 GADAVLSITPYYNKPTQEGLRKHFGKVAES---INLPIVLY 132 (289)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999875554455667787787777653 35788775
No 310
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=24.60 E-value=98 Score=18.79 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++.
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~ia~a---~~lPiilY 132 (292)
T 2vc6_A 95 GADGVLIVSPYYNKPTQEGIYQHFKAIDAA---STIPIIVY 132 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 899999876554455667787787777653 35888874
No 311
>3hxl_A Uncharacterized protein DSY3957; alpha-beta three-domained protein., structural genomics, PSI protein structure initiative; 1.90A {Desulfitobacterium hafniense}
Probab=24.60 E-value=1.5e+02 Score=19.43 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=25.5
Q ss_pred EEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 26 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 26 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
++++.++......+..|++.++.. .+...+.++|++..
T Consensus 203 i~~p~~d~~~~~~l~a~ikr~r~~--~g~~~~aV~g~~~~ 240 (446)
T 3hxl_A 203 IALPSTDDALKATFTAFAKRLRDD--EGKKIQVVLENYPA 240 (446)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHH--TCCCCEEEEESCGG
T ss_pred EEecCCCHHHHHHHHHHHHHHHHh--cCCeEEEEEcCCCC
Confidence 355568888888899999988762 23444556666433
No 312
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=24.47 E-value=1.8e+02 Score=20.25 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=25.0
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.+++|+-+++.+.+.-.+-..++.++++. ..++|++++..+.+
T Consensus 54 ~d~vilDi~lp~~~~~~~G~~ll~~iR~~--~~~iPIi~lTa~~~ 96 (755)
T 2vyc_A 54 IDCLMFSYQMEHPDEHQNVRQLIGKLHER--QQNVPVFLLGDREK 96 (755)
T ss_dssp CSEEEEECCCCSHHHHHHHHHHHHHHHHH--STTCCEEEEECHHH
T ss_pred CcEEEEeCCCCcccccccHHHHHHHHHHh--CCCCCEEEEecCCc
Confidence 57777776665521111112345556653 25799999988754
No 313
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.40 E-value=1.3e+02 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.7
Q ss_pred CCCeEEEEeeCCCCcC
Q psy5805 53 GEKAVILVANKADLER 68 (75)
Q Consensus 53 ~~~~~ilvgnK~Dl~~ 68 (75)
.++|+|+|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 6789999999999753
No 314
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=24.21 E-value=98 Score=17.04 Aligned_cols=43 Identities=9% Similarity=-0.012 Sum_probs=26.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhh--cCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDS--KYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ilvgn 62 (75)
++|++|+.+-+-.-.--..++.|++.+... ....+.++.++++
T Consensus 52 ~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t 96 (188)
T 2ark_A 52 WADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSS 96 (188)
T ss_dssp HCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEE
T ss_pred hCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEE
Confidence 388999887766544445567777766531 1234566666665
No 315
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=23.84 E-value=1.3e+02 Score=18.29 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCcEEEEEEECCChh-----HHHHHHHHHHHHHhhcCCCCCeEEE-EeeCCCC
Q psy5805 20 HPDVFVIVYSVIERK-----TFKKAEDMLKTLWDSKYIGEKAVIL-VANKADL 66 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~-----s~~~~~~~~~~~~~~~~~~~~~~il-vgnK~Dl 66 (75)
++|.+++.=|+.+.. .+..+...+..+.. .++|+++ .|| -|.
T Consensus 40 ~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~----~~~~v~~v~GN-HD~ 87 (333)
T 1ii7_A 40 NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKE----HSIPVFAIEGN-HDR 87 (333)
T ss_dssp TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHT----TTCCEEEECCT-TTC
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHH----CCCcEEEeCCc-CCC
Confidence 699999998886542 33333344444432 3467554 455 443
No 316
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=23.76 E-value=85 Score=16.95 Aligned_cols=28 Identities=0% Similarity=-0.088 Sum_probs=18.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHH
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLW 47 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~ 47 (75)
++|++|+++-+=.-.--..++.|++.+.
T Consensus 71 ~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 71 QCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp TCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred hCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 5999999887655543344566666543
No 317
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=23.59 E-value=1e+02 Score=16.92 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEe
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA 61 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvg 61 (75)
.+|++|+++-+=.-.--..++.|++.+.. ...+.|+++++
T Consensus 84 ~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~ 123 (191)
T 1t0i_A 84 ALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVS 123 (191)
T ss_dssp TCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEE
T ss_pred hCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEE
Confidence 59999998766554333445666665532 12344555544
No 318
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=23.58 E-value=1.3e+02 Score=18.25 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.+-+.+..|+..+-+. .++|+++.
T Consensus 97 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 134 (292)
T 3daq_A 97 GADAIMLITPYYNKTNQRGLVKHFEAIADA---VKLPVVLY 134 (292)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---HCSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 899999985443445667787788777653 25788875
No 319
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=23.46 E-value=1.1e+02 Score=18.77 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=27.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.+-+.+..|+..+-+. .++|+++.
T Consensus 111 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 148 (304)
T 3cpr_A 111 GADGLLVVTPYYSKPSQEGLLAHFGAIAAA---TEVPICLY 148 (304)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999875544455667787787777653 35788875
No 320
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=23.44 E-value=86 Score=16.10 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++.. ++. .+.+|+|++....+
T Consensus 58 ~~dlvi~D~~l~~~~g~~~~~~l----~~~--~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 58 EVDLVISAAHLPQMDGPTLLARI----HQQ--YPSTTRILLTGDPD 97 (153)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHH----HHH--CTTSEEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHH----HhH--CCCCeEEEEECCCC
Confidence 47888888777777776655443 332 36789888876654
No 321
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.37 E-value=1.2e+02 Score=17.68 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=19.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|++-.-.+.. ....+.. .++|+|+++...+
T Consensus 68 ~vdGiI~~~~~~~~~-------~~~~l~~----~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 68 MVDAFILLYSKENDP-------IKQMLID----ESMPFIVIGKPTS 102 (295)
T ss_dssp CCSEEEESCCCTTCH-------HHHHHHH----TTCCEEEESCCCS
T ss_pred CcCEEEEcCcccChH-------HHHHHHh----CCCCEEEECCCCc
Confidence 689988863221111 1222332 4689999987654
No 322
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=23.20 E-value=1.1e+02 Score=18.53 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.+-+.+..|+..+-+. .+.|+++.
T Consensus 96 Gadavlv~~P~y~~~~~~~l~~~f~~ia~a---~~lPiilY 133 (291)
T 3tak_A 96 GADAALLVTPYYNKPTQEGLYQHYKAIAEA---VELPLILY 133 (291)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999875443444667777788777653 36888875
No 323
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=22.85 E-value=64 Score=16.36 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+..+|+.=|.+ +..-..+..+ .. ..++|++.+++|.+|.
T Consensus 35 ka~lViiA~D~~-~~~~~~i~~~----c~---~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 35 RAKLVLLTEDAS-SNTAKKVTDK----CN---YYKVPYKKVESRAVLG 74 (101)
T ss_dssp CCSEEEEETTSC-HHHHHHHHHH----HH---HTTCCEEEESCHHHHH
T ss_pred ceeEEEEecccc-ccchhhhccc----cc---ccCCCeeeechHHHHH
Confidence 355666665554 3344444332 21 2568999999998883
No 324
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=22.68 E-value=1.1e+02 Score=18.65 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=27.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.+-+.+..|+..+-+. .++|+++.
T Consensus 103 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 140 (301)
T 3m5v_A 103 GADGILSVAPYYNKPTQQGLYEHYKAIAQS---VDIPVLLY 140 (301)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 899999985443445667787788777653 36888876
No 325
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=22.61 E-value=1.1e+02 Score=18.86 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.+-+.+..|+..+-+. .++|+++.
T Consensus 118 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 155 (314)
T 3qze_A 118 GADACLLVTPYYNKPTQEGMYQHFRHIAEA---VAIPQILY 155 (314)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---SCSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899999985444445667787788777653 36888876
No 326
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=22.54 E-value=1.1e+02 Score=18.52 Aligned_cols=39 Identities=5% Similarity=0.114 Sum_probs=26.6
Q ss_pred CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCC--CCeEEEE
Q psy5805 20 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIG--EKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~--~~~~ilv 60 (75)
|+|+++++--.-.+ .+-+.+..|+..+-+. .+ ++|+++.
T Consensus 98 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a--~p~~~lPiilY 139 (294)
T 3b4u_A 98 GARNILLAPPSYFKNVSDDGLFAWFSAVFSK--IGKDARDILVY 139 (294)
T ss_dssp TCSEEEECCCCSSCSCCHHHHHHHHHHHHHH--HCTTCCCEEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh--cCCCCCcEEEE
Confidence 89999887544444 4667777777777653 22 6888875
No 327
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=22.51 E-value=15 Score=18.86 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.0
Q ss_pred CCChhHHHHHHHHHHHHH
Q psy5805 30 VIERKTFKKAEDMLKTLW 47 (75)
Q Consensus 30 ~~~~~s~~~~~~~~~~~~ 47 (75)
.+++..+..+..|++.+.
T Consensus 12 ~~d~~~~~~V~~WL~sLr 29 (88)
T 2d3d_A 12 LTDPKLLKNIPMWLKSLR 29 (88)
T ss_dssp HTCHHHHTCHHHHHHHTT
T ss_pred ccCccccccHHHHHHHcc
Confidence 457788889999987654
No 328
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.50 E-value=99 Score=16.44 Aligned_cols=40 Identities=5% Similarity=0.013 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+++.+.+.... ..+...++...+.+++.. .+++++++-|.
T Consensus 54 ~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g-~~~i~v~vGG~ 93 (137)
T 1ccw_A 54 KADAILVSSLY--GQGEIDCKGLRQKCDEAG-LEGILLYVGGN 93 (137)
T ss_dssp TCSEEEEEECS--STHHHHHTTHHHHHHHTT-CTTCEEEEEES
T ss_pred CCCEEEEEecC--cCcHHHHHHHHHHHHhcC-CCCCEEEEECC
Confidence 67877776655 455667777777887642 34566655443
No 329
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=22.44 E-value=85 Score=15.66 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=24.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-++. +++ ..+.+|++++....+
T Consensus 49 ~~dlvilD~~lp~~~g~~~~~~----l~~--~~~~~~ii~ls~~~~ 88 (133)
T 3b2n_A 49 NPNVVILDIEMPGMTGLEVLAE----IRK--KHLNIKVIIVTTFKR 88 (133)
T ss_dssp CCSEEEECSSCSSSCHHHHHHH----HHH--TTCSCEEEEEESCCC
T ss_pred CCCEEEEecCCCCCCHHHHHHH----HHH--HCCCCcEEEEecCCC
Confidence 4677777666666566554333 333 235789988876655
No 330
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.42 E-value=1.1e+02 Score=16.89 Aligned_cols=39 Identities=5% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCcEEEEEEECCChh-HHHHHHHHHHHHHhhcCCCCCeEEE-Eee
Q psy5805 20 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVIL-VAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~il-vgn 62 (75)
++|.+++.=|+.+.. ..+....+++.+.+ .++|+++ .||
T Consensus 32 ~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~----~~~pv~~v~GN 72 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAKSRDYAAFFRILSE----AHLPTAYVPGP 72 (228)
T ss_dssp TCSEEEEESCSSCTTCCHHHHHHHHHHHGG----GCSCEEEECCT
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHh----cCCcEEEECCC
Confidence 599999999998775 55555555555543 2356554 455
No 331
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.37 E-value=1.1e+02 Score=16.84 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=26.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+++.+.+....+ .+...++...+.+++.. .+++++++-|.
T Consensus 69 ~~diV~lS~~~~--~~~~~~~~~i~~L~~~g-~~~i~v~vGG~ 108 (161)
T 2yxb_A 69 DVDVIGVSILNG--AHLHLMKRLMAKLRELG-ADDIPVVLGGT 108 (161)
T ss_dssp TCSEEEEEESSS--CHHHHHHHHHHHHHHTT-CTTSCEEEEEC
T ss_pred CCCEEEEEeech--hhHHHHHHHHHHHHhcC-CCCCEEEEeCC
Confidence 677777665444 56777888888887732 34677666553
No 332
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=22.30 E-value=85 Score=15.65 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=26.9
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+.+.+.+.++-++ .+++. .+.+|++++....+
T Consensus 59 ~~dlvi~D~~l~~~~g~~~~~----~l~~~--~~~~~ii~~s~~~~ 98 (135)
T 3snk_A 59 RPGIVILDLGGGDLLGKPGIV----EARAL--WATVPLIAVSDELT 98 (135)
T ss_dssp CCSEEEEEEETTGGGGSTTHH----HHHGG--GTTCCEEEEESCCC
T ss_pred CCCEEEEeCCCCCchHHHHHH----HHHhh--CCCCcEEEEeCCCC
Confidence 478888888888777665443 34442 24789888876554
No 333
>2bog_X Endoglucanase E-2; hydrolase, thermobifida fusca, TIM A/B fold, glycoside hydrolase family 6; HET: MGL SGC BGC; 1.04A {Thermomonospora fusca} PDB: 2bof_X* 2boe_X* 2bod_X* 1tml_A* 3ru8_X 3rpt_X
Probab=21.99 E-value=1.2e+02 Score=18.88 Aligned_cols=39 Identities=5% Similarity=0.122 Sum_probs=24.4
Q ss_pred CCcEEEEEEECCChh----------HHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERK----------TFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
+.-.++.+|++-+++ +.+.=+.|+..+... ..+.|+++|
T Consensus 65 ~~~pvlVvY~lP~RDCa~aS~Gg~~~~~~Yk~~Id~ia~~--i~~~~~vvI 113 (286)
T 2bog_X 65 GKIPILVVSNAPGRDCGNHSSGGAPSHSAYRSWIDEFAAG--LKNRPAYII 113 (286)
T ss_dssp TCBCEEEECCCSCSCCC------CSSHHHHHHHHHHHHHT--TTTCCCEEE
T ss_pred CCceEEEEeCCCCCCcccccCCCCCCHHHHHHHHHHHHHH--hCCCceEEE
Confidence 344578899998875 344446788887764 344554443
No 334
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=21.98 E-value=92 Score=15.93 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++ .+++. .+.+|++++....+
T Consensus 51 ~~dlii~D~~l~~~~g~~~~~----~l~~~--~~~~~ii~ls~~~~ 90 (153)
T 3cz5_A 51 TPDIVVMDLTLPGPGGIEATR----HIRQW--DGAARILIFTMHQG 90 (153)
T ss_dssp CCSEEEECSCCSSSCHHHHHH----HHHHH--CTTCCEEEEESCCS
T ss_pred CCCEEEEecCCCCCCHHHHHH----HHHHh--CCCCeEEEEECCCC
Confidence 467777766666655554433 33332 25688888876654
No 335
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=21.90 E-value=1.2e+02 Score=18.79 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.+-+.+..|+..+-+. .++|+++.
T Consensus 117 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 154 (315)
T 3si9_A 117 GADAVLVVTPYYNRPNQRGLYTHFSSIAKA---ISIPIIIY 154 (315)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHc---CCCCEEEE
Confidence 899999885443445667777788777653 36888876
No 336
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.80 E-value=89 Score=15.68 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=24.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE-eeCCCCcC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV-ANKADLER 68 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv-gnK~Dl~~ 68 (75)
.+..+|+.=| ..++....+..+ .. ..++|++.+ ++|.+|..
T Consensus 31 ka~lViiA~D-~~~~~~~~i~~~----c~---~~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 31 GAKLIIVAKN-APKEIKDDIYYY----AK---LSDIPVYEFEGTSVELGT 72 (99)
T ss_dssp CCSEEEEECC-CCHHHHHHHHHH----HH---HTTCCEEEECCCSCGGGG
T ss_pred CccEEEEeCC-CCHHHHHHHHHH----HH---HcCCCEEEeCCCHHHHHH
Confidence 3667777766 344444444333 22 256897665 99999853
No 337
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=21.78 E-value=85 Score=15.44 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=23.8
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
.|.+|+-+.+.+.+.++-++ .+++ ..+.+|++++....+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~----~l~~--~~~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIR----HLAE--HKSPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHH----HHHH--TTCCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHHHHH----HHHh--CCCCCCEEEEEeccc
Confidence 56666666666666665443 3343 236788888876654
No 338
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.66 E-value=1.2e+02 Score=18.40 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=26.7
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.=.+.+-+.+..|+..+-+. .+.|+++.
T Consensus 102 Gadavlv~~P~y~~~~~~~l~~~f~~va~a---~~lPiilY 139 (297)
T 3flu_A 102 GADYTLSVVPYYNKPSQEGIYQHFKTIAEA---TSIPMIIY 139 (297)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 899999885443444667777787777653 36888876
No 339
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=21.62 E-value=33 Score=18.66 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=24.2
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
+..+|+.=|.+..+....+..+. + ..++|++.+++|.+|.
T Consensus 49 akLViiA~D~~p~~~~~~l~~lc----~---~~~VP~~~v~sk~eLG 88 (134)
T 2ale_A 49 SEFIIMAADCEPIEILLHLPLLC----E---DKNVPYVFVPSRVALG 88 (134)
T ss_dssp EEEEEEETTCSSGGGGTHHHHHH----H---HHTCCEEEESCHHHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHH----H---hcCCCEEEECCHHHHH
Confidence 45556666665544544444332 2 1358998899988873
No 340
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.53 E-value=1.4e+02 Score=17.75 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=24.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgn 62 (75)
+++++.+-+.+ ..+...++...+.+++. ..++|+++-|.
T Consensus 174 ~~d~V~lS~l~--~~~~~~~~~~i~~l~~~--~~~~~v~vGG~ 212 (258)
T 2i2x_B 174 KPIMLTGTALM--TTTMYAFKEVNDMLLEN--GIKIPFACGGG 212 (258)
T ss_dssp CCSEEEEECCC--TTTTTHHHHHHHHHHTT--TCCCCEEEEST
T ss_pred CCCEEEEEeec--cCCHHHHHHHHHHHHhc--CCCCcEEEECc
Confidence 56766665443 45566777777777763 24577766554
No 341
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=21.45 E-value=1.1e+02 Score=16.37 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEEeeC
Q psy5805 39 AEDMLKTLWDSKYIGEKAVILVANK 63 (75)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~ilvgnK 63 (75)
+.......+.. .....|.++|.+|
T Consensus 136 v~~~~~~a~~~-gv~gTPtfiINGk 159 (184)
T 4dvc_A 136 VHRFDKQFQDS-GLTGVPAVVVNNR 159 (184)
T ss_dssp HHHHHHHHHHH-TCCSSSEEEETTT
T ss_pred HHHHHHHHHHc-CCCcCCEEEECCE
Confidence 33333333333 4578999999877
No 342
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=21.45 E-value=56 Score=18.94 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|+.- .+.+.... .+..+.. .++|+|++++..+
T Consensus 69 ~vdgiii~~--~~~~~~~~---~~~~~~~----~~iPvV~~~~~~~ 105 (304)
T 3gbv_A 69 QPDGVMFAP--TVPQYTKG---FTDALNE----LGIPYIYIDSQIK 105 (304)
T ss_dssp CCSEEEECC--SSGGGTHH---HHHHHHH----HTCCEEEESSCCT
T ss_pred CCCEEEECC--CChHHHHH---HHHHHHH----CCCeEEEEeCCCC
Confidence 688888762 22222221 2233332 3589999887654
No 343
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=21.40 E-value=99 Score=18.97 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCCCc
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 67 (75)
.+..+|+.-|++..+-... +..+.+ .-++|.++|.+|.+|.
T Consensus 140 KAqLVVIA~DvdPielv~~----LPaLCe---e~~VPY~~V~sK~~LG 180 (255)
T 4a17_F 140 QAKLVVIAHDVDPIELVIF----LPQLCR---KNDVPFAFVKGKAALG 180 (255)
T ss_dssp CCSEEEEESCCSSTHHHHH----HHHHHH---HTTCCEEEESCHHHHH
T ss_pred CceEEEEeCCCChHHHHHH----HHHHHH---HcCCCEEEECCHHHHH
Confidence 4788888888865543333 333333 1468999999998873
No 344
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=21.34 E-value=96 Score=15.88 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=25.1
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+|+-+++.+.+.++-++. ++.. .+.+|+|++....+
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~----l~~~--~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 51 SVQLVISDMRMPEMGGEVFLEQ----VAKS--YPDIERVVISGYAD 90 (154)
T ss_dssp CCSEEEEESSCSSSCHHHHHHH----HHHH--CTTSEEEEEECGGG
T ss_pred CCCEEEEecCCCCCCHHHHHHH----HHHh--CCCCcEEEEecCCC
Confidence 4677777777766666554333 3332 25789988877655
No 345
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.24 E-value=1.3e+02 Score=17.34 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=25.0
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhc---CCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ilvgn 62 (75)
.+|++|+.+-+=.-.--..++.|++.+.... ...+.|++++++
T Consensus 79 ~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t 124 (242)
T 1sqs_A 79 ESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDV 124 (242)
T ss_dssp HCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEE
T ss_pred HCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEe
Confidence 4999999876665544445666776653210 123456555543
No 346
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.18 E-value=1.3e+02 Score=18.48 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--. ...+-+.+..|+..+-+.. .+++|+++.
T Consensus 102 Gadavlv~~P~-~~~s~~~l~~~f~~va~a~-~~~lPiilY 140 (313)
T 3dz1_A 102 GAAGVMIAPPP-SLRTDEQITTYFRQATEAI-GDDVPWVLQ 140 (313)
T ss_dssp TCSEEEECCCT-TCCSHHHHHHHHHHHHHHH-CTTSCEEEE
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHHHHHHhC-CCCCcEEEE
Confidence 89999886433 3346677888888776643 234888875
No 347
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=21.10 E-value=51 Score=17.03 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=23.0
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE-eeCCCCc
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV-ANKADLE 67 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv-gnK~Dl~ 67 (75)
+..+|+.=|. .++....+..+ .. ..++|++.+ ++|.+|.
T Consensus 38 a~lViiA~D~-~~~~~~~l~~~----c~---~~~Vp~~~~~~sk~eLG 77 (110)
T 3cpq_A 38 GKLVVLAGNI-PKDLEEDVKYY----AK---LSNIPVYQHKITSLELG 77 (110)
T ss_dssp CSEEEECTTC-BHHHHHHHHHH----HH---HTTCCEEECCSCHHHHH
T ss_pred ceEEEEeCCC-CHHHHHHHHHH----HH---HcCCCEEEEcCCHHHHH
Confidence 5666666666 44444444433 22 146898777 8888873
No 348
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.83 E-value=1.2e+02 Score=16.64 Aligned_cols=43 Identities=5% Similarity=-0.132 Sum_probs=24.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhh---cCCCCCeEEEEee
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVAN 62 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~~ilvgn 62 (75)
++|++|+.+-+-.-.--..++.|++.+... ....+.++.++++
T Consensus 71 ~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t 116 (200)
T 2a5l_A 71 NCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTS 116 (200)
T ss_dssp TCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEE
T ss_pred HCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEe
Confidence 599999987765543334456666554321 1234556666554
No 349
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=20.79 E-value=95 Score=15.59 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=24.8
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++-+.+.+.+.++-++. ++.......+|++++....+
T Consensus 47 ~~dlvi~D~~l~~~~g~~~~~~----l~~~~~~~~~~ii~ls~~~~ 88 (138)
T 3c3m_A 47 PPDLVLLDIMMEPMDGWETLER----IKTDPATRDIPVLMLTAKPL 88 (138)
T ss_dssp CCSEEEEESCCSSSCHHHHHHH----HHHSTTTTTSCEEEEESSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHH----HHcCcccCCCCEEEEECCCC
Confidence 3677777777766666654433 33322235688888766543
No 350
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=20.40 E-value=1.1e+02 Score=16.18 Aligned_cols=42 Identities=10% Similarity=0.171 Sum_probs=28.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..|.+++=+.+.+.+.++-++.. ++....+++|+|++-...+
T Consensus 57 ~~DlillD~~MP~mdG~el~~~i----r~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 57 DFDFVVTDWNMPGMQGIDLLKNI----RADEELKHLPVLMITAEAK 98 (134)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHH----HHSTTTTTCCEEEEESSCC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHH----HhCCCCCCCeEEEEECCCC
Confidence 47888888888777888765543 3322346789988766554
No 351
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=20.39 E-value=1e+02 Score=18.64 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=26.8
Q ss_pred CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+ .+-+.+..++..+-+. .++|+++.
T Consensus 90 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 128 (286)
T 2r91_A 90 GAEAVASLPPYYFPRLSERQIAKYFRDLCSA---VSIPVFLY 128 (286)
T ss_dssp TCSEEEECCSCSSTTCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 89999987554444 5667787788777653 35788775
No 352
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=20.39 E-value=88 Score=15.08 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCcEEEEEEECC-ChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
..+.+++-+++. +.+.++-+ ..+++....+.+|++++ ...+
T Consensus 49 ~~dlvi~d~~~~~~~~g~~~~----~~l~~~~~~~~~~ii~~-~~~~ 90 (127)
T 2gkg_A 49 RPDLVVLAVDLSAGQNGYLIC----GKLKKDDDLKNVPIVII-GNPD 90 (127)
T ss_dssp CCSEEEEESBCGGGCBHHHHH----HHHHHSTTTTTSCEEEE-ECGG
T ss_pred CCCEEEEeCCCCCCCCHHHHH----HHHhcCccccCCCEEEE-ecCC
Confidence 467777766665 44554432 33443222367888888 5544
No 353
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.37 E-value=97 Score=19.31 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.+-+.+..++..+-+. .++|+++.
T Consensus 129 Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a---~~lPiilY 166 (332)
T 2r8w_A 129 GADALLLAPVSYTPLTQEEAYHHFAAVAGA---TALPLAIY 166 (332)
T ss_dssp TCSEEEECCCCSSCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899998875444445667787787777653 35788775
No 354
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.29 E-value=1e+02 Score=18.65 Aligned_cols=38 Identities=3% Similarity=-0.224 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCCh-hHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+ .|-+.+..++..+-+. .++|+++.
T Consensus 91 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a---~~lPiilY 129 (288)
T 2nuw_A 91 DILGVSSHSPYYFPRLPEKFLAKYYEEIARI---SSHSLYIY 129 (288)
T ss_dssp CCSEEEECCCCSSCSCCHHHHHHHHHHHHHH---CCSCEEEE
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 89999987544444 4667787787777653 35788775
No 355
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=20.27 E-value=1e+02 Score=18.79 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.|-+.+..++..+-+. .++|+++.
T Consensus 95 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 132 (297)
T 2rfg_A 95 GADAVLCVAGYYNRPSQEGLYQHFKMVHDA---IDIPIIVY 132 (297)
T ss_dssp TCSEEEECCCTTTCCCHHHHHHHHHHHHHH---CSSCEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEE
Confidence 899998875544455667787777777653 35787765
No 356
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.25 E-value=1.4e+02 Score=17.18 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=20.6
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|+. ..+..... ..++.+.. .++|+|+++...+
T Consensus 61 ~vdgiIi~--~~~~~~~~---~~~~~~~~----~~iPvV~~~~~~~ 97 (291)
T 3l49_A 61 KPDAIIEQ--LGNLDVLN---PWLQKIND----AGIPLFTVDTATP 97 (291)
T ss_dssp CCSEEEEE--SSCHHHHH---HHHHHHHH----TTCCEEEESCCCT
T ss_pred CCCEEEEe--CCChhhhH---HHHHHHHH----CCCcEEEecCCCC
Confidence 68888865 22322222 22333433 4689998887543
No 357
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.15 E-value=1.4e+02 Score=17.14 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=20.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEEeeCCC
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilvgnK~D 65 (75)
+.||+|+.-... ...++.+.+ .++|+|+++...+
T Consensus 63 ~vdgiIi~~~~~--------~~~~~~l~~----~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 63 GFDGLILQSFSN--------PQTVQEILH----QQMPVVSVDREMD 96 (276)
T ss_dssp TCSEEEEESSCC--------HHHHHHHHT----TSSCEEEESCCCT
T ss_pred CCCEEEEecCCc--------HHHHHHHHH----CCCCEEEEecccC
Confidence 688888764322 122333332 5789999987654
No 358
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=20.14 E-value=1.4e+02 Score=17.21 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=29.4
Q ss_pred CcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeE-EEEeeCCCC
Q psy5805 21 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADL 66 (75)
Q Consensus 21 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ilvgnK~Dl 66 (75)
+|.+|++... +..++..+....+.+.......+.++ .+|.|+.+-
T Consensus 141 aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 141 AQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp CCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCEEEEeecC-chhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 7888887764 56777777766666655432234554 578898864
No 359
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=20.07 E-value=1e+02 Score=19.03 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCcEEEEEEECCChhHHHHHHHHHHHHHhhcCCCCCeEEEE
Q psy5805 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 60 (75)
Q Consensus 20 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ilv 60 (75)
|+|+++++--.-.+.+-+.+..++..+-+. .++|+++.
T Consensus 106 Gadavlv~~P~y~~~s~~~l~~~f~~va~a---~~lPiilY 143 (314)
T 3d0c_A 106 GADCVMIHQPVHPYITDAGAVEYYRNIIEA---LDAPSIIY 143 (314)
T ss_dssp TCSEEEECCCCCSCCCHHHHHHHHHHHHHH---SSSCEEEE
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHh---CCCCEEEE
Confidence 899999875444445667787787777653 34788775
Done!