RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5805
(75 letters)
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 57.3 bits (139), Expect = 5e-12
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVS 164
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 54.9 bits (133), Expect = 2e-11
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
+VIVYS+ +R +F+ A ++ L + +ILV NKADL R R+V+
Sbjct: 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVS 130
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 53.8 bits (130), Expect = 7e-11
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 149
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 53.7 bits (130), Expect = 7e-11
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS 128
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 52.5 bits (127), Expect = 2e-10
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVS 125
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 52.6 bits (127), Expect = 2e-10
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
FV+VY + +R +F++ + L + K +ILV NKADL+ RQV+
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVS 151
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 51.9 bits (125), Expect = 4e-10
Identities = 20/52 (38%), Positives = 35/52 (67%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+
Sbjct: 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS 133
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 51.4 bits (124), Expect = 5e-10
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVT 73
F++VYSV R++F + L+ L ++++ +L+ NK D+ + RQVT
Sbjct: 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT 146
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 51.0 bits (123), Expect = 7e-10
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHS 75
F++VYS+ R++ ++ + + + + + K E ++LV NK D R+V S
Sbjct: 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS 130
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 49.9 bits (120), Expect = 2e-09
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT
Sbjct: 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 49.9 bits (120), Expect = 2e-09
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
+V+VYSV +F+ E + + L + V+LV NKADL R+V
Sbjct: 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQ 148
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 49.8 bits (120), Expect = 2e-09
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
+++VYSV K+F+ + + L D + ++LV NK DL R +++
Sbjct: 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYE 132
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 49.5 bits (119), Expect = 3e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 142
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 49.5 bits (119), Expect = 3e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 138
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 49.0 bits (118), Expect = 3e-09
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F +VYS+ + TF +D+ + + K + +ILV NK DLE R V
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKE 129
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 48.6 bits (117), Expect = 4e-09
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS 128
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 48.6 bits (117), Expect = 5e-09
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F++VYS++ +++F+ + M + K + VILV NK DLE R+V+
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS 127
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 48.7 bits (117), Expect = 5e-09
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F++V+++ +R++F + + + K + V+LV NKADLE +RQV S
Sbjct: 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 45.7 bits (109), Expect = 7e-08
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT 73
F++V+SV +++ ++ + K + K E V+LV NK D +R+V
Sbjct: 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVD 132
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 44.0 bits (105), Expect = 2e-07
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F+ V+++ K+F+ + + K + ++LV NK+DL R V
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA-ARTVESR 128
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 44.5 bits (106), Expect = 2e-07
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F+ V+++ K+F + + K + ++LV NK DL R V
Sbjct: 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTK 146
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 44.1 bits (105), Expect = 3e-07
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
F+ V+++ K+F+ + + K + ++LV NK DL R V
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTK 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 43.0 bits (102), Expect = 7e-07
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV----ILVANKADLERRRQVT 73
D + V+S+ + +F+ + L + G + + ++ R V
Sbjct: 74 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVG 129
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 42.9 bits (102), Expect = 7e-07
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL--ERRRQVT 73
V V+S+ + +F+ + L + E ++LV + + R +
Sbjct: 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVID 140
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 42.3 bits (100), Expect = 2e-06
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 23 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
V V+VY + +F++ + + G +I LV NK DL +RQV+
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVGNKTDLADKRQVS 140
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
V+V+S +R++F+ + + +G+ LV NK DL +
Sbjct: 79 QACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIK 128
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 42.1 bits (100), Expect = 2e-06
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
+IV+ V + +F++A+ ++ L V+ L NK+DL R+VT
Sbjct: 89 IIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLLDARKVT 136
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 41.7 bits (99), Expect = 2e-06
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY + + +F+K ++ +K L K +G + + +V NK DLE+ R V+
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVS 130
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 41.9 bits (98), Expect = 2e-06
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 22 DVFVIVYSV--IERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
D F++ V + F + L++ +K +++V K D R +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIR 217
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 41.4 bits (98), Expect = 3e-06
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 23 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
V V+VY + +F + + + G +I LV NK DL +RQV+
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDV--RTERGSDVIIMLVGNKTDLSDKRQVS 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.7 bits (94), Expect = 4e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 32 ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67
E++ KK + LK Y + A L A KA +E
Sbjct: 18 EKQALKKLQASLK-----LYADDSAPAL-AIKATME 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 41.1 bits (97), Expect = 4e-06
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
VIVY + ++ +F + +K L ++ E V+ + NK DL R+V
Sbjct: 100 VIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKCDLSDIREVP 147
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 40.6 bits (96), Expect = 4e-06
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
+IVY + + +TF ++ ++ L ++ V+ + NK DL R+V
Sbjct: 83 IIVYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDLTDVREVM 130
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 40.8 bits (96), Expect = 5e-06
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
+IVY + + +++ L L + + + L+ NK+DL R V
Sbjct: 90 LIVYDISKSSSYENCNHWLSEL--RENADDNVAVGLIGNKSDLAHLRAVP 137
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 40.6 bits (96), Expect = 6e-06
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY + ++F +A++ +K L + VI L NKADL +R V
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVD 130
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 40.7 bits (96), Expect = 6e-06
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
+IVY V ++++F + L+ + +Y + +LV NK DL+ +R V
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVE 132
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 40.7 bits (96), Expect = 6e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++VY + + T++ E LK L + VI LV NK+DL R V
Sbjct: 106 LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPT 154
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 40.3 bits (95), Expect = 6e-06
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++VY + R T+ L VI L+ NKADLE +R VT+
Sbjct: 92 LMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIILIGNKADLEAQRDVTY 140
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 40.3 bits (95), Expect = 7e-06
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++VY + R+TF L+ ++ VI L+ NK+DLE RR V
Sbjct: 98 LLVYDITRRETFNHLTSWLEDA--RQHSSSNMVIMLIGNKSDLESRRDVKR 146
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 40.3 bits (95), Expect = 7e-06
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTH 74
++V+ + + +T+ E LK L + V+ LV NK+DL + R+V
Sbjct: 102 LLVFDLTKHQTYAVVERWLKEL--YDHAEATIVVMLVGNKSDLSQAREVPT 150
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 40.3 bits (95), Expect = 8e-06
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY + + T++ E LK L + VI LV NK+DL R V
Sbjct: 82 LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVP 129
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 40.3 bits (95), Expect = 8e-06
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY V ++++F + L+ + +Y E LV NK DL ++ V
Sbjct: 92 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVD 140
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 39.8 bits (94), Expect = 9e-06
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
++VY V ++F + L + ++ + ILV NK D R+ V
Sbjct: 85 VIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVE 132
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 40.0 bits (94), Expect = 1e-05
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++ + V R T + +K +G +A I + ANK D++ R++++
Sbjct: 89 ILFFDVTSRITCQNLARWVKEF--QAVVGNEAPIVVCANKIDIKNRQKIS 136
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 40.0 bits (94), Expect = 1e-05
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F++++ + +++F + + L + Y ++L+ NKADL +R+V
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN 160
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 39.8 bits (94), Expect = 1e-05
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVT 73
++VY + ++F+ ED + E LV NK DLE R +
Sbjct: 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK 134
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 39.9 bits (94), Expect = 1e-05
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTH 74
++ Y + +R +F ++ + KY G V +L+ NK+DL R+V+
Sbjct: 106 ILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLSELREVSL 154
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 39.5 bits (93), Expect = 1e-05
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY + R+T+ L V+ L NK DL+ R+VT
Sbjct: 102 LLVYDITSRETYNSLAAWLTDA--RTLASPNIVVILCGNKKDLDPEREVT 149
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 39.6 bits (93), Expect = 1e-05
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
F+++Y + ++F +D + Y + A +LV NK D+E R V+
Sbjct: 84 FILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVLLVGNKCDMEDERVVS 132
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 39.1 bits (92), Expect = 2e-05
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTH 74
V VY + +F ++ +++ + ILV NK DL QV
Sbjct: 98 VFVYDMTNMASFHSLPAWIEEC--KQHLLANDIPRILVGNKCDLRSAIQVPT 147
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 38.7 bits (91), Expect = 2e-05
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
F+++Y + +++F +D + Y + A ILV NK DLE R V
Sbjct: 98 FLLMYDIANQESFAAVQDWATQI--KTYSWDNAQVILVGNKCDLEDERVVP 146
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 38.8 bits (91), Expect = 2e-05
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
++VY V ++++F + L+ + +Y E +LV NK DL ++ V
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVD 157
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 38.8 bits (91), Expect = 3e-05
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
F++++ + ++F + + L Y ++L NK+DLE +R V
Sbjct: 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK 146
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 38.8 bits (91), Expect = 3e-05
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHS 75
++ Y + ++F+ + L+ + +Y K + +LV NK DL RR+V+
Sbjct: 103 ILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLAERREVSQQ 152
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 38.7 bits (91), Expect = 3e-05
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVT 73
++VY + R+T+ + L + VI L NK DL+ R+VT
Sbjct: 87 LLVYDITSRETYNALTNWLTDA--RMLASQNIVIILCGNKKDLDADREVT 134
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 38.4 bits (90), Expect = 3e-05
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLE-RRRQVT 73
++V+ V ++F+ + + L ++ E+ + +LVANK DL +R QV
Sbjct: 101 ILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR 152
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 38.4 bits (90), Expect = 4e-05
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
++VY + +++TF +K + KY E A +LV NK D E R++T
Sbjct: 102 IILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREIT 150
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 37.9 bits (89), Expect = 4e-05
Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
++VY + K+F + ++ + ++ +++ NK D+ +RQV+
Sbjct: 84 IMLVYDITNEKSFDNIRNWIRNI--EEHASADVEKMILGNKCDVNDKRQVS 132
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 38.0 bits (89), Expect = 5e-05
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
F+++Y + ++F +D + Y + A ILV NK D+E R V
Sbjct: 99 FILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVGNKCDMEEERVVP 147
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 37.9 bits (89), Expect = 6e-05
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT 73
+++Y V + +F + L + +Y +L+ NK D R V
Sbjct: 87 LLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVDSAHERVVK 135
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 37.6 bits (88), Expect = 7e-05
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAVI-LVANKADLERRRQVT 73
D V+V+ V TFK + S E ++ NK DLE R+ T
Sbjct: 82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVAT 136
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 37.7 bits (88), Expect = 8e-05
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
+I++ V R T+K + + L + ++L NK D++ R+
Sbjct: 92 IIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDRKVKA 138
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 36.7 bits (85), Expect = 1e-04
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
++V+ + T +A+ + L S +ILVANK D + QV
Sbjct: 121 IVVFDISNSNTLDRAKTWVNQLKISSNY---IIILVANKIDKN-KFQVD 165
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 35.7 bits (83), Expect = 4e-04
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 69
++VY V R TF K ++ L L + +LV NK D E R
Sbjct: 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 136
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 35.4 bits (82), Expect = 5e-04
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERR 69
++VY V + +TF + KT+ +++ ++A + LV NK+D+E R
Sbjct: 96 IILVYDVTDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR 140
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 34.8 bits (81), Expect = 6e-04
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 24 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERR 69
++VY + + +TF + KT+ +++ ++A +LV NK+D+E R
Sbjct: 79 IILVYDITDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR 123
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
V++++ +T L+ + KY G+ VI+V NK D +
Sbjct: 123 SVYMLLLDS---RTDSNKHYWLRHI--EKYGGKSPVIVVMNKIDENPSYNIE 169
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 33.7 bits (78), Expect = 0.002
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 22 DVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLE-RRRQVT 73
D V+VY V +F+ + D + +++ NK D E ++ V+
Sbjct: 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS 138
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQV 72
D+F++ +SV+ +F+ + W + + +ILV ++DL +V
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEK----WVPEIRCHCPKAPIILVGTQSDLREDVKV 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 33.5 bits (77), Expect = 0.003
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQVT 73
D+FV+ +S+I + ++ + + W ++ ++LV K DL +
Sbjct: 82 DIFVLAFSLISKASY----ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYL 132
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 33.0 bits (76), Expect = 0.003
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADL------ERRRQVT 73
+++Y V K+F + + + E I LV NKAD+ E ++ V
Sbjct: 105 LLLYDVTCEKSFLNIREWVDMI--EDAAHETVPIMLVGNKADIRDTAATEGQKCVP 158
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 32.3 bits (74), Expect = 0.005
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL--ERRRQVTH 74
DV ++ ++V R +F W+ YI +LV K DL + VT
Sbjct: 96 DVVLLCFAVNNRTSFDNISTK----WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTK 149
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 32.3 bits (74), Expect = 0.006
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 22 DVFVIVYSVIERKT-FKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
+++ VY + + + + L + VILV D+ +Q
Sbjct: 81 ALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVGTHLDVSDEKQR 130
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 31.7 bits (73), Expect = 0.008
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 25 VIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAV-ILVANKADLERRRQVT 73
++ +SV + ++F+ + K E +++ NK D+ RQV+
Sbjct: 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVS 134
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 32.1 bits (73), Expect = 0.008
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQV 72
DVF+I +SV+ +F+ ++ W +Y +L+ + DL +
Sbjct: 91 DVFLICFSVVNPASFQNVKEE----WVPELKEYAPNVPFLLIGTQIDLRDDPKT 140
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 31.7 bits (72), Expect = 0.010
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQV 72
V ++ + V +F + W + + + +I+V K DL + + +
Sbjct: 107 SVLLLCFDVTSPNSFDNIFNR----WYPEVNHFCKKVPIIVVGCKTDLRKDKSL 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 31.7 bits (72), Expect = 0.011
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
DVF+I +S++ +F+ W + +ILV K DL
Sbjct: 103 DVFLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDL 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 31.4 bits (71), Expect = 0.015
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
D ++ + + +T A W Y V+L+ K DL
Sbjct: 98 DSDAVLLCFDISRPETVDSALKK----WRTEILDYCPSTRVLLIGCKTDL 143
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 31.2 bits (71), Expect = 0.016
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
D +I + + +T D + W ++ ++LV K+DL
Sbjct: 78 DSDAVLICFDISRPETL----DSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 30.8 bits (70), Expect = 0.020
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVANKADLERRRQV 72
DVF++ +S+I + +++ + W Y ++LV K DL +Q
Sbjct: 81 DVFILAFSLISKASYEN----VSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQF 130
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 30.7 bits (69), Expect = 0.021
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
DVF+I +S++ +F W + +ILV K DL
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAK----WYPEVRHHCPNTPIILVGTKLDL 271
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 30.9 bits (70), Expect = 0.022
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
D +I + + +T W ++ ++LV K+DL
Sbjct: 101 DAVLICFDISRPETLDSVLKK----WKGEIQEFCPNTKMLLVGCKSDL 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 30.5 bits (69), Expect = 0.025
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQV 72
DV ++ +S+ + + + W + +ILV NK DL +
Sbjct: 98 DVILMCFSIDSPDSLENIPEK----WTPEVKHFCPNVPIILVGNKKDLRQDEHT 147
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 30.1 bits (68), Expect = 0.032
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 20 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
DV +I +S++ +F+ W + +ILV K DL
Sbjct: 76 QTDVSLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDL 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 30.1 bits (68), Expect = 0.032
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL 66
DV ++ +SV + + + W + +ILVANK DL
Sbjct: 98 DVILMCFSVDSPDSLENIPEK----WVPEVKHFCPNVPIILVANKKDL 141
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 29.9 bits (67), Expect = 0.040
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 39 AEDMLKTLWD--SKYIGEKAVILVANKADL 66
D + +++G V+LV NKADL
Sbjct: 79 IFDFNGSWLPGLHRFVGNNKVLLVGNKADL 108
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.5 bits (66), Expect = 0.062
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 50 KYIGEKAVILVANKADL 66
++ + ++LV NKADL
Sbjct: 94 RFAADNPILLVGNKADL 110
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 29.3 bits (66), Expect = 0.071
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 23 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV-ANKADL 66
VFV+ + +R+ AE + + L DS + +L+ NK D+
Sbjct: 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 27.7 bits (62), Expect = 0.30
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 50 KYIGEKAVILVANKADL 66
+ K I++ NKAD
Sbjct: 46 DILKNKPRIMLLNKADK 62
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 27.1 bits (60), Expect = 0.44
Identities = 5/44 (11%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 23 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
+++ S ++ + + + + ++V NK D+
Sbjct: 251 IYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDV 292
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 26.5 bits (59), Expect = 0.73
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 22 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 66
+ V + +D++ + + ++V NK D+
Sbjct: 113 RADCGIL-VTDSAPTPYEDDVVNLFKEME----IPFVVVVNKIDV 152
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 25.9 bits (58), Expect = 1.0
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 22 DVFVIVYSVIERKTFKKAEDM-LKTLWDSKYIGEKAVILVANKADL 66
DV ++++ V+E + ++M L L + K VIL NK D
Sbjct: 88 DVELVIF-VVEGTRWTPDDEMVLNKLREGK----APVILAVNKVDN 128
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 26.1 bits (58), Expect = 1.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
D ++ LW + + +I V + D ER
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRER 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 25.5 bits (57), Expect = 1.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 54 EKAVILVANKAD 65
K VILVA K D
Sbjct: 108 GKPVILVATKVD 119
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 25.5 bits (57), Expect = 1.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 52 IGEKAVILVANKADLERR 69
+ + +ILV NK DL +
Sbjct: 328 VKHRPLILVMNKIDLVEK 345
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 25.6 bits (56), Expect = 1.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
D ++ LW + + +I V + D ER
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRER 247
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 25.3 bits (56), Expect = 1.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
++ W Y AVI V + D +R
Sbjct: 73 TSIRPYWRCYYADTAAVIFVVDSTDKDR 100
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 25.2 bits (56), Expect = 2.0
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 52 IGEKAVILVANKADLERR 69
I K ++V NK D+ +
Sbjct: 348 IKNKRYLVVINKVDVVEK 365
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 25.3 bits (56), Expect = 2.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
+ L++ W++ Y + VI+V + D ER
Sbjct: 71 ESLRSSWNTYYTNTEFVIVVVDSTDRER 98
Score = 23.4 bits (51), Expect = 8.1
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 18 TYHPDVFVIVYSV--IERKTFKKAEDMLKTLWDSKYIGEKAVILV-ANKADLE 67
TY+ + ++ V +R+ + L + + + KA +L+ ANK D++
Sbjct: 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL-RKAGLLIFANKQDVK 130
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 24.9 bits (55), Expect = 2.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
L++ W + + +I V + AD +R
Sbjct: 73 KSLRSYWRNYFESTDGLIWVVDSADRQR 100
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 25.2 bits (56), Expect = 2.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 54 EKAVILVANKAD 65
ILVANKA+
Sbjct: 110 TVDTILVANKAE 121
>3cnl_A YLQF, putative uncharacterized protein; circular permutation,
GNP, signaling protein; HET: GNP; 2.00A {Thermotoga
maritima} PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 24.9 bits (55), Expect = 2.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 52 IGEKAVILVANKADL 66
K I++ NK D+
Sbjct: 44 FSRKETIILLNKVDI 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.7
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 16/61 (26%)
Query: 10 NLVVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--------GEKAVILVA 61
+ + N Q + Y+V + + K L L +K + G K +
Sbjct: 117 DRLYNDNQVFAK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTW-VAL 168
Query: 62 N 62
+
Sbjct: 169 D 169
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 24.9 bits (55), Expect = 2.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
+ L++ W++ Y + VI+V + D ER
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDSTDRER 103
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 24.8 bits (55), Expect = 2.9
Identities = 5/18 (27%), Positives = 6/18 (33%)
Query: 50 KYIGEKAVILVANKADLE 67
+ VANK D
Sbjct: 339 AAHPAAKFLTVANKLDRA 356
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 24.8 bits (55), Expect = 3.0
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 49 SKYIGEKAVILVANKADL 66
++ + + +V NKAD+
Sbjct: 110 ARLPAKLPITVVRNKADI 127
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 24.5 bits (54), Expect = 3.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
D ++ LW + + +I V + D ER
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRER 82
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 24.9 bits (54), Expect = 3.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
D ++ LW Y G + +I V + AD +R
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDR 404
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 24.7 bits (55), Expect = 3.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 54 EKAVILVANKAD 65
+K V+L NK D
Sbjct: 111 KKPVVLAVNKLD 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 24.6 bits (54), Expect = 3.5
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 40 EDMLKTLWDSKYIGEKAVILVANKADLERRRQ 71
+ + L + I+ NK D + Q
Sbjct: 112 VEFYQFLRELD----IPTIVAVNKLDKIKNVQ 139
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 24.5 bits (54), Expect = 3.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
++ W + AVI V + D +R
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDR 104
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 24.4 bits (54), Expect = 4.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 43 LKTLWDSKYIGEKAVILVANKADLER 68
++ W Y AVI V + D +R
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDR 89
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A
{Thermosynechococcus elongatus}
Length = 235
Score = 24.3 bits (53), Expect = 4.3
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 4 RTSCFTNLVVNFVQTYHPDVFVIVYSVIERKT 35
F ++ V +P ++ ++ ER T
Sbjct: 204 ELGLFEDVQVALEPGQNPRRVNLILNIKERNT 235
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase,
transferase, methionine biosynthesis, vitamin B12; HET:
SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Length = 331
Score = 24.3 bits (53), Expect = 4.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 33 RKTFKKAEDMLKTLWDSKYIGEKAVI 58
++ FK A DML L K + + V+
Sbjct: 78 QRLFKDANDMLDKLSAEKTLNPRGVV 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 24.3 bits (53), Expect = 4.7
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 23 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 72
+F+I S T K+ ++ ++ K++++ NK D +
Sbjct: 113 LFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSL 160
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 24.3 bits (54), Expect = 4.8
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 22 DVFVIVYSVIERKTFKKAEDM-LKTLWDSKYIGEKAVILVANKADLERRRQ 71
DV +V+ V R +++ + L +G+ ++LV NK D + +
Sbjct: 86 DVNAVVWVVDLRHPPTPEDELVARAL--KPLVGKVPILLVGNKLDAAKYPE 134
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 24.0 bits (53), Expect = 5.7
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 22 DVFVIVYSVIERKTFKKAED---MLKTLWDSKYIGEKAVILVANKADLERRRQ 71
+ VI++ +I+ + D + K VI+V NK D +
Sbjct: 92 EADVILF-MIDATEGWRPRDEEIYQNFIKPLN----KPVIVVINKIDKIGPAK 139
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer
bacterial MEM protein membrane transport, beta barrel
biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Length = 316
Score = 23.9 bits (51), Expect = 6.4
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 4 RTSCFTNLVVNFVQTYHPDVFVIVYSVIERKT 35
T F ++ V+ P +V +V+ER
Sbjct: 278 GTGLFEDVNVSLDPGTDPTKVNVVVNVVERSL 309
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO
JCSG, protein structure initiative, PSI, joint center
for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 23.7 bits (52), Expect = 6.5
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 54 EKAVILVANKADLERRRQ 71
I ANK DL ++
Sbjct: 52 NAHAIEEANKIDLAVAKE 69
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 23.4 bits (51), Expect = 8.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 31 IERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 67
+ K ++D L K +++ ANKAD
Sbjct: 191 LPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA 227
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom
JCSG, PSI, protein structure initiative, joint center
for S genomics; 2.00A {Thermotoga maritima} SCOP:
c.82.1.1
Length = 427
Score = 23.3 bits (51), Expect = 9.1
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 54 EKAVILVANKADLERRRQ 71
+ IL AN+ D+E+ R+
Sbjct: 52 RRKEILEANRIDVEKARE 69
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 23.3 bits (51), Expect = 9.2
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 41 DMLKTLWDSKYIGEKAVILVANKADLER 68
++ W S + +I V + AD +R
Sbjct: 71 RKIRPYWRSYFENTDILIYVIDSADRKR 98
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 23.3 bits (50), Expect = 9.6
Identities = 5/59 (8%), Positives = 14/59 (23%), Gaps = 11/59 (18%)
Query: 20 HPDVFVIVYSVI-----ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT 73
++V V +++ +LV A +++
Sbjct: 118 DVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW------CKTLLVLTHAQFSPPDELS 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.381
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,115,945
Number of extensions: 51151
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 124
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)