RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5805
         (75 letters)



>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
          [TaxId: 1423]}
          Length = 273

 Score = 26.7 bits (58), Expect = 0.23
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 50 KYIGEKAVILVANKADL 66
            +  K  I++ NKAD 
Sbjct: 38 DILKNKPRIMLLNKADK 54


>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 167

 Score = 23.3 bits (49), Expect = 4.1
 Identities = 19/56 (33%), Positives = 33/56 (58%)

Query: 20  HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 75
           +   F++VYS++ +++F+  + M   +   K   +  VILV NK DLE  R+V+ S
Sbjct: 74  NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS 129


>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 22.9 bits (49), Expect = 4.7
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 14/50 (28%)

Query: 33 RKTFKKAEDMLKTLWDSKY--------------IGEKAVILVANKADLER 68
              ++ +  L+T+ + +Y              + EK V +++N+  L  
Sbjct: 4  SSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGL 53


>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor
          Tex {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 149

 Score = 22.9 bits (49), Expect = 4.9
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 12 VVNFVQTYHPDVFVIVYSVIERKTFKKAEDMLK 44
          +      +  ++  I      R+T K A +++K
Sbjct: 51 LAALCAKHQVELIAIGNGTASRETDKLAGELIK 83


>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 166

 Score = 22.6 bits (47), Expect = 5.5
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 20  HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 65
             + F+ V+++   K+F+      + +   K   +  ++LV NK D
Sbjct: 74  TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,274
Number of extensions: 9441
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.1 bits)