BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5806
(1332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/595 (37%), Positives = 337/595 (56%), Gaps = 58/595 (9%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 25 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 84
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 85 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 144
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 145 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 204
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 205 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 264
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQ 449
+ C CSH+CL P K + C CP G+ L + K+C + ELL+ AR+ DLR
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 324
Query: 450 LTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT 509
L P T + VL + +++ +AI ++ +YW D E I R+ I+G+ V+
Sbjct: 325 LDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 383
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYW 569
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I ++P+ G MYW
Sbjct: 384 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 443
Query: 570 CSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
WG++ KIE A +DGS R +L + SL P GLA+D + ++YW + IE N DGT
Sbjct: 444 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 503
Query: 630 RKQTLIA-----LHHLKVMTKVVGLTD-----IDIFHRRRSKK----------------- 662
++ L+ + ++ V TD I+ H+R +++
Sbjct: 504 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 563
Query: 663 ------THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLL 711
++PC E NGGCSHLCL P+ G+RC CP G L D +TC P FLL
Sbjct: 564 VHRVIGSNPCAEENGGCSHLCLYRPQ-GLRCACPIGFELISDMKTCIV-PEAFLL 616
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 225/614 (36%), Positives = 317/614 (51%), Gaps = 48/614 (7%)
Query: 436 LLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAH 495
LL+YA ++DLR+ T V V ++ A+ + ++ +YW+DV I R
Sbjct: 3 LLLYANRRDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 60
Query: 496 INGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ L +
Sbjct: 61 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 120
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +LYWA
Sbjct: 121 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 180
Query: 615 NVGLKTIEFTNLDGTRKQTLI----------------------ALHHLKVMTKVV--GLT 650
+ L I +NLDGT +Q ++ + H + K GL
Sbjct: 181 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 240
Query: 651 DI--DIF---------HRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLRED 698
+I DIF +R+ T+PC +NGGCSHLCL++P K +C CP G L E+
Sbjct: 241 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 699 RRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDI 758
+TC + ++ LL+++ +R+ISLD IVL L ++ ++D D YIYW+D
Sbjct: 301 GKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 360
Query: 759 SEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKV 818
+ I R D +G + +V + + IAVD + R +YWTD I V+ ++G K+
Sbjct: 361 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 420
Query: 819 LFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCL 877
L +L PR+IV+ +G M W DW +IE A +DG++R V T + WP+ L
Sbjct: 421 LISEDLEEPRAIVLDPMVGYMYWTDWGEI----PKIERAALDGSDRVVLVNTSLGWPNGL 476
Query: 878 AIDYSDNPKLYWVDTSKHTIE-YKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSK 936
A+DY D K+YW D IE T TGR H + T+L YVYWTD Q
Sbjct: 477 ALDY-DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRS 535
Query: 937 IYRANKYDVKDIVEFAQVDRPWLVRA--AQNISFPNACGSNNGGCSHLCLRNPTNFTCAC 994
I R +K + V Q+ ++A + N C NGGCSHLCL P CAC
Sbjct: 536 IERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCAC 595
Query: 995 PTGILLSADRRSCF 1008
P G L +D ++C
Sbjct: 596 PIGFELISDMKTCI 609
Score = 339 bits (869), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 208/597 (34%), Positives = 310/597 (51%), Gaps = 41/597 (6%)
Query: 738 LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT-GRERLVVNDLNRTESIAVDAIGRKI 796
L+ A+VD + IYWSD+SE+ I+R F+ T + +VV+ L + +A D +G K+
Sbjct: 31 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I VS++DG KVLFW L +PR+I + G M W DW +IE
Sbjct: 91 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV----PKIER 146
Query: 857 AHMDGTNR-AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A MDG++R + +E+ WP+ L +DY + KLYW D + I L T R
Sbjct: 147 AGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSL 205
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISFPNA-- 971
HP+ LT+ + +YWTD I NKY + + E + + P + A PNA
Sbjct: 206 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 265
Query: 972 -CGSNNGGCSHLCLRNPTN--FTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRIS 1028
CG +NGGCSHLCL +P + CACPTG+ L + ++C E LL R +RRIS
Sbjct: 266 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTD-LRRIS 324
Query: 1029 LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFAD--MRSGNLRTFDMSDSTRIKPIPLM 1086
LDT D + L + +I DY + IY+ D +R+ D S S + +
Sbjct: 325 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 384
Query: 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLL 1145
+ D +DWVA N+Y+ D+ I V R +G +KIL++ DL EP AI + P G +
Sbjct: 385 HP---DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYM 441
Query: 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205
+++ WG KIE+ LDGS R VLV L +PN LA+D+ + +++W D+ +IE
Sbjct: 442 YWTDWG-----EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 496
Query: 1206 YCDFFGRSRKIVISKVAP--YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
+ G R++++ P +G ++ +YWTDW+ S+ ++S +
Sbjct: 497 VMNTDGTGRRVLVEDKIPHIFGFTLLGD-------YVYWTDWQRRSIERVHKRSA----E 545
Query: 1264 VHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
+I D + +KA + + + NPCA++NGGCSHLC Y R +G C CP E
Sbjct: 546 REVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLY--RPQGLRCACPIGFE 600
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 168/299 (56%), Gaps = 25/299 (8%)
Query: 162 KRVSLSNKKYTAIIRNLHNV---LAVDYHYKKNLLVWN---------THIVHTGMQSV-- 207
+R+SL +T I+ L ++ +A+DY + + W + I +G Q V
Sbjct: 321 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT 380
Query: 208 ------GSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
++VDWV ++WTDT R+E L+G RKILI+ ++++PRA+++ P +
Sbjct: 381 AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGY 440
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
++WTDWG+ PKIER +DGS+R V++ ++ WPNGL +D++E ++YW +AK IE +
Sbjct: 441 MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 500
Query: 322 DGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381
DG+ R+ ++ +PH FG TL D+V+WTDW +SI +K + + + L M +
Sbjct: 501 DGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAER-EVIIDQLPDLMGL 559
Query: 382 RSYHPHRQPNYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLI 438
++ + HR + CA + CSH+CL C CP+G L D K+C PE L+
Sbjct: 560 KATNVHRVIG-SNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTCI-VPEAFLL 616
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 439 bits (1129), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/586 (37%), Positives = 333/586 (56%), Gaps = 57/586 (9%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 33 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 93 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 153 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 212
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 213 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 272
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQ 449
+ C CSH+CL P K + C CP G+ L + K+C + ELL+ AR+ DLR
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 332
Query: 450 LTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT 509
L P T + VL + +++ +AI ++ +YW D E I R+ I+G+ V+
Sbjct: 333 LDTPDFT-DIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQI 391
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYW 569
P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I ++P+ G MYW
Sbjct: 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYW 451
Query: 570 CSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
WG++ KIE A +DGS R +L + SL P GLA+D + ++YW + IE N DGT
Sbjct: 452 TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511
Query: 630 RKQTLIA-----LHHLKVMTKVVGLTD-----IDIFHRRRSKK----------------- 662
++ L+ + ++ V TD I+ H+R +++
Sbjct: 512 GRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATN 571
Query: 663 ------THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
++PC E NGGCSHLCL P+ G+RC CP G L D +TC
Sbjct: 572 VHRVIGSNPCAEENGGCSHLCLYRPQ-GLRCACPIGFELISDMKTC 616
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 225/614 (36%), Positives = 317/614 (51%), Gaps = 48/614 (7%)
Query: 436 LLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAH 495
LL+YA ++DLR+ T V V ++ A+ + ++ +YW+DV I R
Sbjct: 11 LLLYANRRDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 496 INGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ L +
Sbjct: 69 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 128
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +LYWA
Sbjct: 129 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188
Query: 615 NVGLKTIEFTNLDGTRKQTLI----------------------ALHHLKVMTKVV--GLT 650
+ L I +NLDGT +Q ++ + H + K GL
Sbjct: 189 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 248
Query: 651 DI--DIF---------HRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLRED 698
+I DIF +R+ T+PC +NGGCSHLCL++P K +C CP G L E+
Sbjct: 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 308
Query: 699 RRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDI 758
+TC + ++ LL+++ +R+ISLD IVL L ++ ++D D YIYW+D
Sbjct: 309 GKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 759 SEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKV 818
+ I R D +G + +V + + IAVD + R +YWTD I V+ ++G K+
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428
Query: 819 LFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCL 877
L +L PR+IV+ +G M W DW +IE A +DG++R V T + WP+ L
Sbjct: 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEI----PKIERAALDGSDRVVLVNTSLGWPNGL 484
Query: 878 AIDYSDNPKLYWVDTSKHTIE-YKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSK 936
A+DY D K+YW D IE T TGR H + T+L YVYWTD Q
Sbjct: 485 ALDY-DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRS 543
Query: 937 IYRANKYDVKDIVEFAQVDRPWLVRA--AQNISFPNACGSNNGGCSHLCLRNPTNFTCAC 994
I R +K + V Q+ ++A + N C NGGCSHLCL P CAC
Sbjct: 544 IERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCAC 603
Query: 995 PTGILLSADRRSCF 1008
P G L +D ++C
Sbjct: 604 PIGFELISDMKTCI 617
Score = 339 bits (870), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 208/597 (34%), Positives = 310/597 (51%), Gaps = 41/597 (6%)
Query: 738 LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT-GRERLVVNDLNRTESIAVDAIGRKI 796
L+ A+VD + IYWSD+SE+ I+R F+ T + +VV+ L + +A D +G K+
Sbjct: 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 98
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I VS++DG KVLFW L +PR+I + G M W DW +IE
Sbjct: 99 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV----PKIER 154
Query: 857 AHMDGTNR-AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A MDG++R + +E+ WP+ L +DY + KLYW D + I L T R
Sbjct: 155 AGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSL 213
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISFPNA-- 971
HP+ LT+ + +YWTD I NKY + + E + + P + A PNA
Sbjct: 214 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 273
Query: 972 -CGSNNGGCSHLCLRNPTN--FTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRIS 1028
CG +NGGCSHLCL +P + CACPTG+ L + ++C E LL R +RRIS
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTD-LRRIS 332
Query: 1029 LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFAD--MRSGNLRTFDMSDSTRIKPIPLM 1086
LDT D + L + +I DY + IY+ D +R+ D S S + +
Sbjct: 333 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392
Query: 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLL 1145
+ D +DWVA N+Y+ D+ I V R +G +KIL++ DL EP AI + P G +
Sbjct: 393 HP---DGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYM 449
Query: 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205
+++ WG KIE+ LDGS R VLV L +PN LA+D+ + +++W D+ +IE
Sbjct: 450 YWTDWG-----EIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIE 504
Query: 1206 YCDFFGRSRKIVISKVAP--YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
+ G R++++ P +G ++ +YWTDW+ S+ ++S +
Sbjct: 505 VMNTDGTGRRVLVEDKIPHIFGFTLLGD-------YVYWTDWQRRSIERVHKRSA----E 553
Query: 1264 VHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
+I D + +KA + + + NPCA++NGGCSHLC Y R +G C CP E
Sbjct: 554 REVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLY--RPQGLRCACPIGFE 608
Score = 196 bits (498), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 164/290 (56%), Gaps = 24/290 (8%)
Query: 162 KRVSLSNKKYTAIIRNLHNV---LAVDYHYKKNLLVWN---------THIVHTGMQSV-- 207
+R+SL +T I+ L ++ +A+DY + + W + I +G Q V
Sbjct: 329 RRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT 388
Query: 208 ------GSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
++VDWV ++WTDT R+E L+G RKILI+ ++++PRA+++ P +
Sbjct: 389 AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGY 448
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
++WTDWG+ PKIER +DGS+R V++ ++ WPNGL +D++E ++YW +AK IE +
Sbjct: 449 MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508
Query: 322 DGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381
DG+ R+ ++ +PH FG TL D+V+WTDW +SI +K + + + L M +
Sbjct: 509 DGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAER-EVIIDQLPDLMGL 567
Query: 382 RSYHPHRQPNYQSHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
++ + HR + CA + CSH+CL C CP+G L D K+C
Sbjct: 568 KATNVHRVIG-SNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 329 bits (844), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 194/609 (31%), Positives = 313/609 (51%), Gaps = 72/609 (11%)
Query: 162 KRVSL-SNKKYTAI-IRNLHNVLAVDYHYKKNLLVWN-----------------THIVHT 202
+R+SL +N AI + + A+D+ N + W H+V
Sbjct: 16 RRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF 75
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ ++VDW+ ++W DT R+E LDG++R++L+ ++D PRA+ + P + F+
Sbjct: 76 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 135
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WT+WG PKI+R MDGS R L N+ NGLTID+ + RLYWT+ + IESS++
Sbjct: 136 YWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 194
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G R +VI LPHPFG+T Y+D+++WTDW +SI ANK +G+N + L + M+I
Sbjct: 195 GLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL 253
Query: 383 SYHPHRQPNYQSHCAPKV--CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPEELLIY 439
+H RQ + + CA CSH+CL F C CP +L+ DN++CS +P L++
Sbjct: 254 VFHSSRQSGW-NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 311
Query: 440 ARQKDL-RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
+++ + R+ + SP + +LP+ ++++V AI ++ + LYW D I +A +G
Sbjct: 312 SQKSAINRMVIDEQQSP--DIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG 369
Query: 499 TFQYNVIRHNTK------KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + V+ + +P ++ID + +YWT N I V+ LDG ++
Sbjct: 370 SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQ 429
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLH-KIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
PR I VNP G MY+ + + KIE A +DG+ R +L L P LA+D +L
Sbjct: 430 DRPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKL 489
Query: 612 YWANVGLKTIEFTNLDGT---------------------------RKQTLIALHHL---- 640
+WA+ L+ IE ++L G ++Q +I +
Sbjct: 490 FWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGRE 549
Query: 641 ---KVMTKVVGLTDIDIFHR--RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695
KV ++ L+DI + + HPC ++NGGCSH+CL+ RC CP +L
Sbjct: 550 GRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 609
Query: 696 REDRRTCSE 704
+D +C E
Sbjct: 610 LQDELSCGE 618
Score = 290 bits (742), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 190/624 (30%), Positives = 302/624 (48%), Gaps = 59/624 (9%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
PE L+++R+ D+R +++ + +P+ VK A+ ++ ++ +YW D+ I+
Sbjct: 3 PEAFLLFSRRADIR--RISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 60
Query: 493 RAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
RA +NG+ +V+ P G+A+DW LYW ++ N IEVS LDG + +L W++L
Sbjct: 61 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 120
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
PR +A++P G MYW WG KI+ A MDGS R L + + GL ID RLY
Sbjct: 121 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLY 179
Query: 613 WANVGLKTIEFTNLDGTRKQTLI---------------------ALHHLKVMTKVVG--- 648
W ++ IE +N+ G ++ + + ++ K G
Sbjct: 180 WTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 239
Query: 649 ---------LTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699
+ DI +FH R + C +NG CSHLCL P G C CPA L D
Sbjct: 240 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 299
Query: 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDIS 759
RTCS P+ FLL SQ I ++ +D + I+LP+ L+ V ++D D ++ +YW D
Sbjct: 300 RTCSA-PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 358
Query: 760 EKTIERVRFDMTGRERLVVNDLNRTE------SIAVDAIGRKIYWTDMNAQTIMVSDIDG 813
+ I + + D + +VV+ + +++D R IYWT I V+ +DG
Sbjct: 359 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 418
Query: 814 KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVI 872
++ V+ RPR+IVV+ G M + + + +IE A +DGT R V F + +
Sbjct: 419 RSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLS 475
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQS---HPYTLTVLDYYVYW 929
P LA+D S KL+W D+ IE L+ A R S P LTV + ++YW
Sbjct: 476 KPIALALD-SRLGKLFWADSDLRRIESSDLSG--ANRIVLEDSNILQPVGLTVFENWLYW 532
Query: 930 TDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISF----PNACGSNNGGCSHLCL 984
D Q I + + + + A++ + + A + ++ + C +NGGCSH+CL
Sbjct: 533 IDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICL 592
Query: 985 RNPTNFT-CACPTGILLSADRRSC 1007
T C+CP ++L D SC
Sbjct: 593 VKGDGTTRCSCPMHLVLLQDELSC 616
Score = 283 bits (724), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 201/624 (32%), Positives = 300/624 (48%), Gaps = 33/624 (5%)
Query: 705 NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIE 764
+P FLL S+ IR+ISL+ + +PL +K +++D D + IYW+DIS KTI
Sbjct: 2 DPEAFLLFSRRADIRRISLETNNNN-VAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 60
Query: 765 RVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
R + + E +V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L
Sbjct: 61 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 120
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDN 884
PR++ + G M W +W +I+ A MDG+ R V + L IDY+
Sbjct: 121 DSPRALALDPAEGFMYWTEWG----GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR 176
Query: 885 PKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944
+LYW D + IE + + HP+ LT Y+YWTD I RANK
Sbjct: 177 -RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS 235
Query: 945 VKD---IVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT-NFTCACPTGILL 1000
++ I LV + S N C S+NG CSHLCL P F C CP L
Sbjct: 236 GQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSL 295
Query: 1001 SADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIY 1060
+AD R+C + T FLL++ + I R+ +D + LP + DY +Y
Sbjct: 296 NADNRTCSAPT-TFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLY 353
Query: 1061 FADMRSGNLRTFDMSDS----TRIKPIPLMNDTIRD-NFVIDWVANNIYYIDSQMHTINV 1115
+ D R +R S + +P N I+ + ID + IY+ + INV
Sbjct: 354 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 413
Query: 1116 ARSDGQHKKILVNDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL 1174
R DG+ +++ + P AI V P +G +++++ L + SP KIE+ LDG+ R VL
Sbjct: 414 TRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTN--LQERSP--KIERAALDGTEREVL 469
Query: 1175 VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK--VAPYGLSVRQSP 1232
L+ P LA+D + +LFWADS +RIE D G +R ++ + P GL+V
Sbjct: 470 FFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV---- 525
Query: 1233 GKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCA 1292
F LYW D + + G+ V + D +K ++ ++ +PCA
Sbjct: 526 ---FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL-QEYRQHPCA 581
Query: 1293 QDNGGCSHLCFYKGRTKGYVCGCP 1316
QDNGGCSH+C KG C CP
Sbjct: 582 QDNGGCSHICLVKGDGTTR-CSCP 604
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 327 bits (837), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 193/607 (31%), Positives = 312/607 (51%), Gaps = 72/607 (11%)
Query: 162 KRVSL-SNKKYTAI-IRNLHNVLAVDYHYKKNLLVWN-----------------THIVHT 202
+R+SL +N AI + + A+D+ N + W H+V
Sbjct: 23 RRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF 82
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ ++VDW+ ++W DT R+E LDG++R++L+ ++D PRA+ + P + F+
Sbjct: 83 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 142
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WT+WG PKI+R MDGS R L N+ NGLTID+ + RLYWT+ + IESS++
Sbjct: 143 YWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 201
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G R +VI LPHPFG+T Y+D+++WTDW +SI ANK +G+N + L + M+I
Sbjct: 202 GLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL 260
Query: 383 SYHPHRQPNYQSHCAPKV--CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPEELLIY 439
+H RQ + + CA CSH+CL F C CP +L+ DN++CS +P L++
Sbjct: 261 VFHSSRQSGW-NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 318
Query: 440 ARQKDL-RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
+++ + R+ + SP + +LP+ ++++V AI ++ + LYW D I +A +G
Sbjct: 319 SQKSAINRMVIDEQQSP--DIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG 376
Query: 499 TFQYNVIRHNTK------KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + V+ + +P ++ID + +YWT N I V+ LDG ++
Sbjct: 377 SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQ 436
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLH-KIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
PR I VNP G MY+ + + KIE A +DG+ R +L L P LA+D +L
Sbjct: 437 DRPRAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKL 496
Query: 612 YWANVGLKTIEFTNLDGT---------------------------RKQTLIALHHL---- 640
+WA+ L+ IE ++L G ++Q +I +
Sbjct: 497 FWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGRE 556
Query: 641 ---KVMTKVVGLTDIDIFHR--RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695
KV ++ L+DI + + HPC ++NGGCSH+CL+ RC CP +L
Sbjct: 557 GRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 616
Query: 696 REDRRTC 702
+D +C
Sbjct: 617 LQDELSC 623
Score = 289 bits (740), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 190/624 (30%), Positives = 302/624 (48%), Gaps = 59/624 (9%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
PE L+++R+ D+R +++ + +P+ VK A+ ++ ++ +YW D+ I+
Sbjct: 10 PEAFLLFSRRADIR--RISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 67
Query: 493 RAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
RA +NG+ +V+ P G+A+DW LYW ++ N IEVS LDG + +L W++L
Sbjct: 68 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 127
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
PR +A++P G MYW WG KI+ A MDGS R L + + GL ID RLY
Sbjct: 128 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLY 186
Query: 613 WANVGLKTIEFTNLDGTRKQTLI---------------------ALHHLKVMTKVVG--- 648
W ++ IE +N+ G ++ + + ++ K G
Sbjct: 187 WTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 246
Query: 649 ---------LTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699
+ DI +FH R + C +NG CSHLCL P G C CPA L D
Sbjct: 247 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 306
Query: 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDIS 759
RTCS P+ FLL SQ I ++ +D + I+LP+ L+ V ++D D ++ +YW D
Sbjct: 307 RTCSA-PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 365
Query: 760 EKTIERVRFDMTGRERLVVNDLNRTE------SIAVDAIGRKIYWTDMNAQTIMVSDIDG 813
+ I + + D + +VV+ + +++D R IYWT I V+ +DG
Sbjct: 366 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 425
Query: 814 KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVI 872
++ V+ RPR+IVV+ G M + + + +IE A +DGT R V F + +
Sbjct: 426 RSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLS 482
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQS---HPYTLTVLDYYVYW 929
P LA+D S KL+W D+ IE L+ A R S P LTV + ++YW
Sbjct: 483 KPIALALD-SRLGKLFWADSDLRRIESSDLSG--ANRIVLEDSNILQPVGLTVFENWLYW 539
Query: 930 TDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISF----PNACGSNNGGCSHLCL 984
D Q I + + + + A++ + + A + ++ + C +NGGCSH+CL
Sbjct: 540 IDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICL 599
Query: 985 RNPTNFT-CACPTGILLSADRRSC 1007
T C+CP ++L D SC
Sbjct: 600 VKGDGTTRCSCPMHLVLLQDELSC 623
Score = 282 bits (721), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 201/623 (32%), Positives = 299/623 (47%), Gaps = 33/623 (5%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
P FLL S+ IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R
Sbjct: 10 PEAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 68
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
+ + E +V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L
Sbjct: 69 AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD 128
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNP 885
PR++ + G M W +W +I+ A MDG+ R V + L IDY+
Sbjct: 129 SPRALALDPAEGFMYWTEWG----GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR- 183
Query: 886 KLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV 945
+LYW D + IE + + HP+ LT Y+YWTD I RANK
Sbjct: 184 RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 243
Query: 946 KD---IVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT-NFTCACPTGILLS 1001
++ I LV + S N C S+NG CSHLCL P F C CP L+
Sbjct: 244 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 303
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYF 1061
AD R+C + T FLL++ + I R+ +D + LP + DY +Y+
Sbjct: 304 ADNRTCSAPT-TFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 361
Query: 1062 ADMRSGNLRTFDMSDS----TRIKPIPLMNDTIRD-NFVIDWVANNIYYIDSQMHTINVA 1116
D R +R S + +P N I+ + ID + IY+ + INV
Sbjct: 362 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 421
Query: 1117 RSDGQHKKILVNDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV 1175
R DG+ +++ + P AI V P +G +++++ L + SP KIE+ LDG+ R VL
Sbjct: 422 RLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTN--LQERSP--KIERAALDGTEREVLF 477
Query: 1176 EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK--VAPYGLSVRQSPG 1233
L+ P LA+D + +LFWADS +RIE D G +R ++ + P GL+V
Sbjct: 478 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV----- 532
Query: 1234 KAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQ 1293
F LYW D + + G+ V + D +K ++ ++ +PCAQ
Sbjct: 533 --FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL-QEYRQHPCAQ 589
Query: 1294 DNGGCSHLCFYKGRTKGYVCGCP 1316
DNGGCSH+C KG C CP
Sbjct: 590 DNGGCSHICLVKGDGTTR-CSCP 611
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 326 bits (836), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/608 (31%), Positives = 312/608 (51%), Gaps = 72/608 (11%)
Query: 162 KRVSL-SNKKYTAI-IRNLHNVLAVDYHYKKNLLVWN-----------------THIVHT 202
+R+SL +N AI + + A+D+ N + W H+V
Sbjct: 18 RRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF 77
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ ++VDW+ ++W DT R+E LDG++R++L+ ++D PRA+ + P + F+
Sbjct: 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFM 137
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WT+WG PKI+R MDGS R L N+ NGLTID+ + RLYWT+ + IESS++
Sbjct: 138 YWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G R +VI LPHPFG+T Y+D+++WTDW +SI ANK +G+N + L + M+I
Sbjct: 197 GLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL 255
Query: 383 SYHPHRQPNYQSHCAPKV--CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPEELLIY 439
+H RQ + + CA CSH+CL F C CP +L+ DN++CS +P L++
Sbjct: 256 VFHSSRQSGW-NECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS-APTTFLLF 313
Query: 440 ARQKDL-RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
+++ + R+ + SP + +LP+ ++++V AI ++ + LYW D I +A +G
Sbjct: 314 SQKSAINRMVIDEQQSP--DIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDG 371
Query: 499 TFQYNVIRHNTK------KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + V+ + +P ++ID + +YWT N I V+ LDG ++
Sbjct: 372 SQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQ 431
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLH-KIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
PR + VNP G MY+ + + KIE A +DG+ R +L L P LA+D +L
Sbjct: 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKL 491
Query: 612 YWANVGLKTIEFTNLDGT---------------------------RKQTLIALHHL---- 640
+WA+ L+ IE ++L G ++Q +I +
Sbjct: 492 FWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGRE 551
Query: 641 ---KVMTKVVGLTDIDIFHR--RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLL 695
KV ++ L+DI + + HPC ++NGGCSH+CL+ RC CP +L
Sbjct: 552 GRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 611
Query: 696 REDRRTCS 703
+D +C
Sbjct: 612 LQDELSCG 619
Score = 289 bits (739), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 189/624 (30%), Positives = 302/624 (48%), Gaps = 59/624 (9%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
PE L+++R+ D+R +++ + +P+ VK A+ ++ ++ +YW D+ I+
Sbjct: 5 PEAFLLFSRRADIR--RISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 493 RAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
RA +NG+ +V+ P G+A+DW LYW ++ N IEVS LDG + +L W++L
Sbjct: 63 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 122
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
PR +A++P G MYW WG KI+ A MDGS R L + + GL ID RLY
Sbjct: 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLY 181
Query: 613 WANVGLKTIEFTNLDGTRKQTLI---------------------ALHHLKVMTKVVG--- 648
W ++ IE +N+ G ++ + + ++ K G
Sbjct: 182 WTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 649 ---------LTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699
+ DI +FH R + C +NG CSHLCL P G C CPA L D
Sbjct: 242 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 301
Query: 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDIS 759
RTCS P+ FLL SQ I ++ +D + I+LP+ L+ V ++D D ++ +YW D
Sbjct: 302 RTCSA-PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360
Query: 760 EKTIERVRFDMTGRERLVVNDLNRTE------SIAVDAIGRKIYWTDMNAQTIMVSDIDG 813
+ I + + D + +VV+ + +++D R IYWT I V+ +DG
Sbjct: 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 814 KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVI 872
++ V+ RPR++VV+ G M + + + +IE A +DGT R V F + +
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLS 477
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQS---HPYTLTVLDYYVYW 929
P LA+D S KL+W D+ IE L+ A R S P LTV + ++YW
Sbjct: 478 KPIALALD-SRLGKLFWADSDLRRIESSDLSG--ANRIVLEDSNILQPVGLTVFENWLYW 534
Query: 930 TDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISF----PNACGSNNGGCSHLCL 984
D Q I + + + + A++ + + A + ++ + C +NGGCSH+CL
Sbjct: 535 IDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICL 594
Query: 985 RNPTNFT-CACPTGILLSADRRSC 1007
T C+CP ++L D SC
Sbjct: 595 VKGDGTTRCSCPMHLVLLQDELSC 618
Score = 282 bits (721), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 200/623 (32%), Positives = 299/623 (47%), Gaps = 33/623 (5%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
P FLL S+ IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R
Sbjct: 5 PEAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
+ + E +V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD 123
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNP 885
PR++ + G M W +W +I+ A MDG+ R V + L IDY+
Sbjct: 124 SPRALALDPAEGFMYWTEWG----GKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKR- 178
Query: 886 KLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV 945
+LYW D + IE + + HP+ LT Y+YWTD I RANK
Sbjct: 179 RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238
Query: 946 KD---IVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT-NFTCACPTGILLS 1001
++ I LV + S N C S+NG CSHLCL P F C CP L+
Sbjct: 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 298
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYF 1061
AD R+C + T FLL++ + I R+ +D + LP + DY +Y+
Sbjct: 299 ADNRTCSAPT-TFLLFSQK-SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 1062 ADMRSGNLRTFDMSDS----TRIKPIPLMNDTIRD-NFVIDWVANNIYYIDSQMHTINVA 1116
D R +R S + +P N I+ + ID + IY+ + INV
Sbjct: 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 416
Query: 1117 RSDGQHKKILVNDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV 1175
R DG+ +++ + P A+ V P +G +++++ L + SP KIE+ LDG+ R VL
Sbjct: 417 RLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTN--LQERSP--KIERAALDGTEREVLF 472
Query: 1176 EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK--VAPYGLSVRQSPG 1233
L+ P LA+D + +LFWADS +RIE D G +R ++ + P GL+V
Sbjct: 473 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTV----- 527
Query: 1234 KAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQ 1293
F LYW D + + G+ V + D +K ++ ++ +PCAQ
Sbjct: 528 --FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL-QEYRQHPCAQ 584
Query: 1294 DNGGCSHLCFYKGRTKGYVCGCP 1316
DNGGCSH+C KG C CP
Sbjct: 585 DNGGCSHICLVKGDGTTR-CSCP 606
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 300 bits (769), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 128/278 (46%), Positives = 192/278 (69%), Gaps = 19/278 (6%)
Query: 162 KRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGM 204
++V +YT ++ NL N +A+D+H+++ L+ W+ +V TG+
Sbjct: 99 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158
Query: 205 QSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFW 264
+S G L+VDWVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++W
Sbjct: 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 218
Query: 265 TDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGS 324
TDWG TP+IE MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS
Sbjct: 219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278
Query: 325 RRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSY 384
R+ VI++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I +
Sbjct: 279 HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338
Query: 385 HPHRQPNYQSHCAPK--VCSHICLPNKHRFTCQCPLGL 420
HP RQP ++ C C+H+CLP+ +TC CP G
Sbjct: 339 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 376
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 180/349 (51%), Gaps = 19/349 (5%)
Query: 658 RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE-NPSKFLLVSQTD 716
R + + C E G CS C + + +C C AG LR DRR+C P LL +
Sbjct: 39 RTCQDVNECAEE-GYCSQGCTNS-EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96
Query: 717 KIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERL 776
IRQ+ + +R L L L+ ++D + E ++WSD++ I R + + E +
Sbjct: 97 DIRQV---LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV 153
Query: 777 VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
V L +AVD + K+YWTD I V+++DG + KVL W +L +PR+I +H
Sbjct: 154 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 213
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKH 895
G + W DW T RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H
Sbjct: 214 GTIYWTDWGNTP----RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHH 268
Query: 896 TIEYKTLATGRAKRAYAVQS--HPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDI-VEFA 952
IE L G ++A Q HP+ +TV + +YWTD I ANK+ K+ +
Sbjct: 269 VIERANL-DGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327
Query: 953 QVDRPWLVRAAQNISFP---NACGSNNGGCSHLCLRNPTNFTCACPTGI 998
++ P + P N CG NNGGC+HLCL + N+TCACPTG
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 376
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 41/328 (12%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE-SPEELLIYARQKDLRISQLTEPSPTFET 459
CS C ++ F C C G L PD +SC PE +L++A + D+R L S E
Sbjct: 53 CSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIR-QVLPHRS---EY 108
Query: 460 VLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDW 519
L + N+++ +A+ + + ++W+DV I RA++NG+ V+ + P G+A+DW
Sbjct: 109 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW 168
Query: 520 RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIE 579
+KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G +YW WG+ +IE
Sbjct: 169 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 228
Query: 580 MAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALH- 638
+ MDGS R I+A L P GL ID R+YW + IE NLDG+ ++ +I+
Sbjct: 229 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 288
Query: 639 ------------------HLKVMTKVVGLT---------------DIDIFH-RRRSKKTH 664
H K + T DI H +R+ +
Sbjct: 289 PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKN 348
Query: 665 PCNENNGGCSHLCLIAPKDGIRCVCPAG 692
C +NNGGC+HLCL + ++ C CP G
Sbjct: 349 RCGDNNGGCTHLCLPSGQN-YTCACPTG 375
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 180/363 (49%), Gaps = 35/363 (9%)
Query: 961 RAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTRE-FLLYTS 1019
R Q++ N C + G CS C + F C C G L DRRSC + E LL+ +
Sbjct: 39 RTCQDV---NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFAN 94
Query: 1020 RFGVIRRISLDTADLLP----VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS 1075
R +D +LP TL ++I D+H+ + L++++D+ + +++
Sbjct: 95 R--------IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146
Query: 1076 DSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPL 1134
S ++ + +DWV + +Y+ DS I VA DG H+K+L+ L +P
Sbjct: 147 GSN-VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR 205
Query: 1135 AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRL 1194
AIA++P G ++++ WG N+P +IE +DGS R ++ + L +PN L ID+ RR+
Sbjct: 206 AIALHPMEGTIYWTDWG---NTP--RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM 260
Query: 1195 FWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254
+W D+ + IE + G RK VIS+ P+ ++ F LYWTDW S+ A
Sbjct: 261 YWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI-----TVFEDSLYWTDWHTKSINSAN 315
Query: 1255 EKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCFYKGRTKGYVC 1313
+ + Q +IR+ ++I + +Q N C +NGGC+HLC G+ Y C
Sbjct: 316 KFTGKNQ---EIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQN--YTC 370
Query: 1314 GCP 1316
CP
Sbjct: 371 ACP 373
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 300 bits (767), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 128/278 (46%), Positives = 192/278 (69%), Gaps = 19/278 (6%)
Query: 162 KRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGM 204
++V +YT ++ NL N +A+D+H+++ L+ W+ +V TG+
Sbjct: 56 RQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115
Query: 205 QSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFW 264
+S G L+VDWVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++W
Sbjct: 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175
Query: 265 TDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGS 324
TDWG TP+IE MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS
Sbjct: 176 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235
Query: 325 RRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSY 384
R+ VI++GLPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I +
Sbjct: 236 HRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 295
Query: 385 HPHRQPNYQSHCAPK--VCSHICLPNKHRFTCQCPLGL 420
HP RQP ++ C C+H+CLP+ +TC CP G
Sbjct: 296 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 333
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 120/336 (35%), Positives = 175/336 (52%), Gaps = 18/336 (5%)
Query: 671 GGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE-NPSKFLLVSQTDKIRQISLDVEYRY 729
G CS C + + +C C AG LR DRR+C P LL + IRQ+ + +R
Sbjct: 8 GYCSQGCTNS-EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV---LPHRS 63
Query: 730 PIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAV 789
L L L+ ++D + E ++WSD++ I R + + E +V L +AV
Sbjct: 64 EYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 123
Query: 790 DAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRL 849
D + K+YWTD I V+++DG + KVL W +L +PR+I +H G + W DW T
Sbjct: 124 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTP- 182
Query: 850 TNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAK 908
RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H IE L G +
Sbjct: 183 ---RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANL-DGSHR 237
Query: 909 RAYAVQS--HPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDI-VEFAQVDRPWLVRAAQN 965
+A Q HP+ +TV + +YWTD I ANK+ K+ + ++ P +
Sbjct: 238 KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHP 297
Query: 966 ISFP---NACGSNNGGCSHLCLRNPTNFTCACPTGI 998
P N CG NNGGC+HLCL + N+TCACPTG
Sbjct: 298 QRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGF 333
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/328 (33%), Positives = 169/328 (51%), Gaps = 41/328 (12%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE-SPEELLIYARQKDLRISQLTEPSPTFET 459
CS C ++ F C C G L PD +SC PE +L++A + D+R L S E
Sbjct: 10 CSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIR-QVLPHRS---EY 65
Query: 460 VLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDW 519
L + N+++ +A+ + + ++W+DV I RA++NG+ V+ + P G+A+DW
Sbjct: 66 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW 125
Query: 520 RTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIE 579
+KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G +YW WG+ +IE
Sbjct: 126 VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185
Query: 580 MAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALH- 638
+ MDGS R I+A L P GL ID R+YW + IE NLDG+ ++ +I+
Sbjct: 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGL 245
Query: 639 ------------------HLKVMTKVVGLT---------------DIDIFH-RRRSKKTH 664
H K + T DI H +R+ +
Sbjct: 246 PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKN 305
Query: 665 PCNENNGGCSHLCLIAPKDGIRCVCPAG 692
C +NNGGC+HLCL + ++ C CP G
Sbjct: 306 RCGDNNGGCTHLCLPSGQN-YTCACPTG 332
Score = 170 bits (431), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 176/354 (49%), Gaps = 32/354 (9%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTRE-FLLYTSRFGVIRRIS 1028
N C + G CS C + F C C G L DRRSC + E LL+ +R
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANR-------- 52
Query: 1029 LDTADLLP----VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP 1084
+D +LP TL ++I D+H+ + L++++D+ + +++ S ++ +
Sbjct: 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV 111
Query: 1085 LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIAVYPRRG 1143
+DWV + +Y+ DS I VA DG H+K+L+ L +P AIA++P G
Sbjct: 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 171
Query: 1144 LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203
++++ WG N+P +IE +DGS R ++ + L +PN L ID+ RR++W D+ +
Sbjct: 172 TIYWTDWG---NTP--RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV 226
Query: 1204 IEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
IE + G RK VIS+ P+ ++ F LYWTDW S+ A + + Q
Sbjct: 227 IERANLDGSHRKAVISQGLPHPFAI-----TVFEDSLYWTDWHTKSINSANKFTGKNQ-- 279
Query: 1264 VHLIRSNQEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCFYKGRTKGYVCGCP 1316
+IR+ ++I + +Q N C +NGGC+HLC G+ Y C CP
Sbjct: 280 -EIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQN--YTCACP 330
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 263 bits (673), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 179/292 (61%), Gaps = 22/292 (7%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 25 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 84
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 85 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 144
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 145 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 204
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 205 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 264
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYAR 441
+ C CSH+CL P K + C CP G+ L + K+C + ELL+ AR
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR 316
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 169/316 (53%), Gaps = 39/316 (12%)
Query: 436 LLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAH 495
LL+YA ++DLR+ T V V ++ A+ + ++ +YW+DV I R
Sbjct: 3 LLLYANRRDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 60
Query: 496 INGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ L +
Sbjct: 61 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 120
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +LYWA
Sbjct: 121 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 180
Query: 615 NVGLKTIEFTNLDGTRKQTLI----------------------ALHHLKVMTKVV--GLT 650
+ L I +NLDGT +Q ++ + H + K GL
Sbjct: 181 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 240
Query: 651 DI--DIF---------HRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLRED 698
+I DIF +R+ T+PC +NGGCSHLCL++P K +C CP G L E+
Sbjct: 241 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 699 RRTCSENPSKFLLVSQ 714
+TC + ++ LL+++
Sbjct: 301 GKTCKDGATELLLLAR 316
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 153/288 (53%), Gaps = 14/288 (4%)
Query: 738 LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT-GRERLVVNDLNRTESIAVDAIGRKI 796
L+ A+VD + IYWSD+SE+ I+R F+ T + +VV+ L + +A D +G K+
Sbjct: 31 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I VS++DG KVLFW L +PR+I + G M W DW +IE
Sbjct: 91 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP----KIER 146
Query: 857 AHMDGTNR-AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A MDG++R + +E+ WP+ L +DY + KLYW D + I L T R
Sbjct: 147 AGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSL 205
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISFPNA-- 971
HP+ LT+ + +YWTD I NKY + + E + + P + A PNA
Sbjct: 206 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 265
Query: 972 -CGSNNGGCSHLCLRNPTN--FTCACPTGILLSADRRSCFSRTREFLL 1016
CG +NGGCSHLCL +P + CACPTG+ L + ++C E LL
Sbjct: 266 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 313
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 146/283 (51%), Gaps = 18/283 (6%)
Query: 1051 DYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM 1110
D+ +S LIY++D+ ++ + + + ++ + + D DW+ +Y+ DS+
Sbjct: 38 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 97
Query: 1111 HTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169
+ I V+ DG +K+L +L +P AIA+ P G ++++ WG KIE+ +DGS
Sbjct: 98 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGS 152
Query: 1170 YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVR 1229
R +++ ++ +PN L +D+++++L+WAD+ I + G +R+ V+ P+ ++
Sbjct: 153 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL- 211
Query: 1230 QSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQL-TW 1288
F LYWTDW S++ + + G ++H S+ ++I A S +Q
Sbjct: 212 ----TLFEDILYWTDWSTHSILACNKYTGEGLREIH---SDIFSPMDIHAFSQQRQPNAT 264
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDD---LEPNEECFEG 1328
NPC DNGGCSHLC Y C CP LE + C +G
Sbjct: 265 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 307
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 713 SQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISE-KTIERVRFDMT 771
S+T++I +LD R VL ++L ++ +D + ++YW+D E IER D +
Sbjct: 95 SETNRIEVSNLDGSLRK--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 152
Query: 772 GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831
R ++ +++ + +D +K+YW D I S++DG N + + +L P ++
Sbjct: 153 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT 212
Query: 832 VHYGLGLMVWADWS 845
+ ++ W DWS
Sbjct: 213 LFE--DILYWTDWS 224
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 254 bits (650), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 173/283 (61%), Gaps = 22/283 (7%)
Query: 172 TAIIRNLHNVLAVDYHYKKNLLVWN------------------THIVHTGMQSVGSLSVD 213
T ++ L + AVD+ + L+ W+ ++V +G+ S L+ D
Sbjct: 28 TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
W+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F++WTDWG+ PKI
Sbjct: 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 147
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LDG+ RQ V+
Sbjct: 148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS 207
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I ++ RQPN
Sbjct: 208 LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNAT 267
Query: 394 SHCA--PKVCSHICL--PNKHRFTCQCPLGLTLSPDNKSCSES 432
+ C CSH+CL P K + C CP G+ L + K+C +
Sbjct: 268 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Score = 200 bits (508), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 163/309 (52%), Gaps = 39/309 (12%)
Query: 436 LLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAH 495
LL+YA ++DLR+ T V V ++ A+ + ++ +YW+DV I R
Sbjct: 6 LLLYANRRDLRLVDATNGKENATIV--VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 63
Query: 496 INGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ L +
Sbjct: 64 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 123
Query: 555 PRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +LYWA
Sbjct: 124 PRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 183
Query: 615 NVGLKTIEFTNLDGTRKQTLI----------------------ALHHLKVMTKVV--GLT 650
+ L I +NLDGT +Q ++ + H + K GL
Sbjct: 184 DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR 243
Query: 651 DI--DIF---------HRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLLRED 698
+I DIF +R+ T+PC +NGGCSHLCL++P K +C CP G L E+
Sbjct: 244 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 303
Query: 699 RRTCSENPS 707
+TC + S
Sbjct: 304 GKTCKDGNS 312
Score = 181 bits (458), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 150/279 (53%), Gaps = 14/279 (5%)
Query: 738 LKMVASVDVDTKNEYIYWSDISEKTIERVRFDMT-GRERLVVNDLNRTESIAVDAIGRKI 796
L+ A+VD + IYWSD+SE+ I+R F+ T + +VV+ L + +A D +G K+
Sbjct: 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93
Query: 797 YWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEM 856
YWTD I VS++DG KVLFW L +PR+I + G M W DW +IE
Sbjct: 94 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVP----KIER 149
Query: 857 AHMDGTNR-AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQ 914
A MDG++R + +E+ WP+ L +DY + KLYW D + I L T R
Sbjct: 150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVKGSL 208
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEF-AQVDRPWLVRAAQNISFPNA-- 971
HP+ LT+ + +YWTD I NKY + + E + + P + A PNA
Sbjct: 209 PHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATN 268
Query: 972 -CGSNNGGCSHLCLRNPTN--FTCACPTGILLSADRRSC 1007
CG +NGGCSHLCL +P + CACPTG+ L + ++C
Sbjct: 269 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 146/283 (51%), Gaps = 18/283 (6%)
Query: 1051 DYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM 1110
D+ +S LIY++D+ ++ + + + ++ + + D DW+ +Y+ DS+
Sbjct: 41 DFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 100
Query: 1111 HTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169
+ I V+ DG +K+L +L +P AIA+ P G ++++ WG KIE+ +DGS
Sbjct: 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGS 155
Query: 1170 YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVR 1229
R +++ ++ +PN L +D+++++L+WAD+ I + G +R+ V+ P+ ++
Sbjct: 156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL- 214
Query: 1230 QSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQL-TW 1288
F LYWTDW S++ + + G ++H S+ ++I A S +Q
Sbjct: 215 ----TLFEDILYWTDWSTHSILACNKYTGEGLREIH---SDIFSPMDIHAFSQQRQPNAT 267
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDD---LEPNEECFEG 1328
NPC DNGGCSHLC Y C CP LE + C +G
Sbjct: 268 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 713 SQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISE-KTIERVRFDMT 771
S+T++I +LD R VL ++L ++ +D + ++YW+D E IER D +
Sbjct: 98 SETNRIEVSNLDGSLRK--VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155
Query: 772 GRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831
R ++ +++ + +D +K+YW D I S++DG N + + +L P ++
Sbjct: 156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT 215
Query: 832 VHYGLGLMVWADWS 845
+ ++ W DWS
Sbjct: 216 LFE--DILYWTDWS 227
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 207 bits (527), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 229/491 (46%), Gaps = 76/491 (15%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCI-----------LK 74
G CI QCD E+DC+ DE+ C + + P++ +C +G CI +
Sbjct: 243 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE--GPNKFKCHSGECITLDKVCNMARDCR 300
Query: 75 TWLCDGIPDCSLGE---DERNCNKTC-DAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRA 130
W + I +C E + C+ C D + + C+ P ++ + + + +
Sbjct: 301 DWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC---PDGFQLVAQRRCEDIDECQD 357
Query: 131 PRKDCFSKKYLCDGKKHCPRGEEG----PDERHCP----------------KRVSLSNKK 170
P C +G C + EEG P + C ++++L +
Sbjct: 358 PDT-CSQLCVNLEGGYKC-QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 171 YTAIIRNLHNVLAVDYHYKKNLLVWNT---------------------HIVHTGMQSVGS 209
YT++I NL NV+A+D N + W+ ++ +Q+
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475
Query: 210 LSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGK 269
L+VDW+H ++WTD+ V D G RK L N KPRA++V P F++WTDWG
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535
Query: 270 TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQV 329
KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D++G R+ +
Sbjct: 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595
Query: 330 I--TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPH 387
+ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P ++ +H
Sbjct: 596 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL 655
Query: 388 RQPNYQSHCAPKV-----CSHICLP----NKH--RFTCQCPLGLTLSPDNKSCSESPEEL 436
QP + C C ++CLP N H +FTC CP G+ L+ D +SC E
Sbjct: 656 TQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAA 715
Query: 437 LIYARQKDLRI 447
+ +R+
Sbjct: 716 VATQETSTVRL 726
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 197/424 (46%), Gaps = 71/424 (16%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----------TCSE------- 704
T+ C +NNGGCSH+C K G C+CP G L RR TCS+
Sbjct: 312 TNECLDNNGGCSHVCNDL-KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEG 370
Query: 705 ----------------------NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA 742
+L + ++R+++LD Y ++P L+ V
Sbjct: 371 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD-RSEYTSLIP--NLRNVV 427
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYW 798
++D + + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYW
Sbjct: 428 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 487
Query: 799 TDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH 858
TD T+ V+D G K LF N +PR+IVV G M W DW T +I+
Sbjct: 488 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGG 543
Query: 859 MDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ--- 914
++G + TE I WP+ + +D +LYWVD+ H+I + G K +
Sbjct: 544 LNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 602
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQ-VDRPWLVRAAQNISFP---N 970
+HP++L V + V+WTD+ + I+ AN+ D+ A+ + P + N++ P N
Sbjct: 603 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN 662
Query: 971 ACGS---NNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRTREFLLYTSRF 1021
C +NGGC +LCL P FTCACP G+LL+ D RSC + E + T
Sbjct: 663 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA-EAAVATQET 721
Query: 1022 GVIR 1025
+R
Sbjct: 722 STVR 725
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/374 (29%), Positives = 179/374 (47%), Gaps = 58/374 (15%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE-ELLIYARQKDLRISQLTEPSPT 456
P CS +C+ + + CQC G L P K+C L + + ++R ++T
Sbjct: 358 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR--KMTLDRSE 415
Query: 457 FETVLPVMNVKSVVAIAWESANDSLYWADVE-----NGEINRAHINGTFQYN-VIRHNTK 510
+ +++P N+++VVA+ E A++ +YW+D+ + +++RAH G Y+ VI + +
Sbjct: 416 YTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQ 471
Query: 511 KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWC 570
P G+A+DW + +YWT+S + V++ G LF +N S+PR I V+P+ G MYW
Sbjct: 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 531
Query: 571 SWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTR 630
WG KI+ G++G + L +++++ P G+ +DL + RLYW + L +I +++G
Sbjct: 532 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591
Query: 631 KQTLIA----LHH---LKVMTKVVGLTDI---DIFHRRR--------------------- 659
++T++ L H L V V TDI IF R
Sbjct: 592 RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 651
Query: 660 -SKKTHPCNEN--------NGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTCSEN 705
T P N NGGC +LCL AP+ C CP G LL D R+C
Sbjct: 652 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 711
Query: 706 PSKFLLVSQTDKIR 719
+ +T +R
Sbjct: 712 AEAAVATQETSTVR 725
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 177/416 (42%), Gaps = 95/416 (22%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR------------------------ 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 372
Query: 1006 ---------------SCFS-RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIF 1049
+C + + +L +T+R V R+++LD ++ + P + +
Sbjct: 373 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV-RKMTLDRSEYTSL---IPNLRNVVA 428
Query: 1050 FDYHYSKNLIYFADM-----------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW 1098
D + N IY++D+ R+ + ++D S I+ D +DW
Sbjct: 429 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ--------APDGLAVDW 480
Query: 1099 VANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157
+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++ WG
Sbjct: 481 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT----- 535
Query: 1158 TTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV 1217
KI+K L+G LV E++ +PN + +D RL+W DS I D G +RK +
Sbjct: 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 595
Query: 1218 ISK----VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN--- 1270
+ P+ L+V F +++WTD ++ A + + DV+L+ N
Sbjct: 596 LEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIFSANRLTGS---DVNLLAENLLS 645
Query: 1271 QEDFLNIKAISASKQLTWNPCAQ---DNGGCSHLCF----YKGRTKGYVCGCPDDL 1319
ED + ++ + + W C + NGGC +LC + + C CPD +
Sbjct: 646 PEDMVLFHNLTQPRGVNW--CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 699
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++CD
Sbjct: 74 GRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFVCDSDR 129
Query: 83 DCSLGEDERNC 93
DC G DE +C
Sbjct: 130 DCLDGSDEASC 140
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 4 SVPVLWVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDE--MKC-------PQAS 54
S PVL G P +CN + CIP W CDN+ DCE G DE +C +S
Sbjct: 139 SCPVLTCG-----PASFQCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSS 192
Query: 55 PPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
P CS E C +G CI +W CDG PDC DE NC EF C
Sbjct: 193 P---CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQC 240
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHCILKTWLCDGIPD 83
G CI +W CD +C+ G DE + + C + C CI + W CDG D
Sbjct: 34 GKCISYKWVCDGSAECQDGSDESQ--ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVD 91
Query: 84 CSLGEDERNC-NKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLC 142
C G DE+ C KTC +Q EF C C S++++C
Sbjct: 92 CDNGSDEQGCPPKTC-SQDEFRCHD-------------------------GKCISRQFVC 125
Query: 143 DGKKHCPRGEEGPDERHCP 161
D + C +G DE CP
Sbjct: 126 DSDRDCL---DGSDEASCP 141
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
K+ N C +NGGCSH+C GY C CPD +
Sbjct: 308 KECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 342
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 203 bits (516), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 140/481 (29%), Positives = 226/481 (46%), Gaps = 82/481 (17%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCI-----------LK 74
G CI QCD E+DC+ DE+ C + + P++ +C +G CI +
Sbjct: 225 GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE--GPNKFKCHSGECITLDKVCNMARDCR 282
Query: 75 TWLCDGIPDCSLGE---DERNCNKTC-DAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRA 130
W + I +C E + C+ C D + + C+ P ++ + + + +
Sbjct: 283 DWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLC---PDGFQLVAQRRCEDIDECQD 339
Query: 131 PRKDCFSKKYLC---DGKKHCPRGEEG----PDERHCP----------------KRVSLS 167
P + LC +G C + EEG P + C ++++L
Sbjct: 340 PD----TCSQLCVNLEGGYKC-QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 394
Query: 168 NKKYTAIIRNLHNVLAVDYHYKKNLLVWNT---------------------HIVHTGMQS 206
+YT++I NL NV+A+D N + W+ ++ +Q+
Sbjct: 395 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 454
Query: 207 VGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTD 266
L+VDW+H ++WTD+ V D G RK L KPRA++V P F++WTD
Sbjct: 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTD 514
Query: 267 WGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRR 326
WG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D++G R
Sbjct: 515 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574
Query: 327 QQVI--TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSY 384
+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P ++ +
Sbjct: 575 KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634
Query: 385 HPHRQPNYQSHCAPKV-----CSHICLP----NKH--RFTCQCPLGLTLSPDNKSCSESP 433
H QP + C C ++CLP N H +FTC CP G+ L+ D +SC
Sbjct: 635 HQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA 694
Query: 434 E 434
E
Sbjct: 695 E 695
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 124/417 (29%), Positives = 192/417 (46%), Gaps = 82/417 (19%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----------TCSE------- 704
T+ C +NNGGCSH+C K G C+CP G L RR TCS+
Sbjct: 294 TNECLDNNGGCSHVCNDL-KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEG 352
Query: 705 ----------------------NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA 742
+L + ++R+++LD Y ++P L+ V
Sbjct: 353 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD-RSEYTSLIP--NLRNVV 409
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYW 798
++D + + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYW
Sbjct: 410 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 469
Query: 799 TDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH 858
TD T+ V+D G K LF +PR+IVV G M W DW T +I+
Sbjct: 470 TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGG 525
Query: 859 MDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ--- 914
++G + TE I WP+ + +D +LYWVD+ H+I + G K +
Sbjct: 526 LNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 584
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKY---DV----------KDIVEFAQVDRPWLVR 961
+HP++L V + V+WTD+ + I+ AN+ DV +D+V F Q+ +P V
Sbjct: 585 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVN 644
Query: 962 AAQNISFPNACGSNNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRTR 1012
+ + +NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 645 WCERTTL------SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 695
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/357 (29%), Positives = 174/357 (48%), Gaps = 58/357 (16%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE-ELLIYARQKDLRISQLTEPSPT 456
P CS +C+ + + CQC G L P K+C L + + ++R ++T
Sbjct: 340 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR--KMTLDRSE 397
Query: 457 FETVLPVMNVKSVVAIAWESANDSLYWADVE-----NGEINRAHINGTFQYN-VIRHNTK 510
+ +++P N+++VVA+ E A++ +YW+D+ + +++RAH G Y+ VI + +
Sbjct: 398 YTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQ 453
Query: 511 KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWC 570
P G+A+DW + +YWT+S + V++ G LF + S+PR I V+P+ G MYW
Sbjct: 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWT 513
Query: 571 SWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTR 630
WG KI+ G++G + L +++++ P G+ +DL + RLYW + L +I +++G
Sbjct: 514 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 573
Query: 631 KQTLIA----LHH---LKVMTKVVGLTDI---DIFHRRR--------------------- 659
++T++ L H L V V TDI IF R
Sbjct: 574 RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633
Query: 660 -SKKTHPCNEN--------NGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTC 702
+ T P N NGGC +LCL AP+ C CP G LL D R+C
Sbjct: 634 FHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 690
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 106/416 (25%), Positives = 177/416 (42%), Gaps = 95/416 (22%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR------------------------ 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 354
Query: 1006 ---------------SCFS-RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIF 1049
+C + + +L +T+R V R+++LD ++ T P + +
Sbjct: 355 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV-RKMTLDRSEY---TSLIPNLRNVVA 410
Query: 1050 FDYHYSKNLIYFADM-----------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW 1098
D + N IY++D+ R+ + ++D S I+ D +DW
Sbjct: 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ--------APDGLAVDW 462
Query: 1099 VANNIYYIDSQMHTINVARSDGQHKKILVNDL-MEPLAIAVYPRRGLLFYSHWGLYDNSP 1157
+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++ WG
Sbjct: 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT----- 517
Query: 1158 TTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV 1217
KI+K L+G LV E++ +PN + +D RL+W DS I D G +RK +
Sbjct: 518 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 577
Query: 1218 ISK----VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN--- 1270
+ P+ L+V F +++WTD ++ A + + DV+L+ N
Sbjct: 578 LEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIFSANRLTGS---DVNLLAENLLS 627
Query: 1271 QEDFLNIKAISASKQLTWNPCAQ---DNGGCSHLCF----YKGRTKGYVCGCPDDL 1319
ED + ++ + + W C + NGGC +LC + + C CPD +
Sbjct: 628 PEDMVLFHQLTQPRGVNW--CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 681
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++CD
Sbjct: 56 GRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFVCDSDR 111
Query: 83 DCSLGEDERNC 93
DC G DE +C
Sbjct: 112 DCLDGSDEASC 122
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 4 SVPVLWVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ--------ASP 55
S PVL G P +CN + CIP W CDN+ DCE G DE PQ
Sbjct: 121 SCPVLTCG-----PASFQCN-SSTCIPQLWACDNDPDCEDGSDEW--PQRCRGLYVFQGD 172
Query: 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
CS E C +G CI +W CDG PDC DE NC EF C
Sbjct: 173 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQC 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 57/141 (40%), Gaps = 34/141 (24%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHCILKTWLCDGI 81
+ G CI +W CD +C+ G DE + + C + C CI + W CDG
Sbjct: 14 QDGKCISYKWVCDGSAECQDGSDESQ--ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQ 71
Query: 82 PDCSLGEDERNC-NKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKY 140
DC G DE+ C KTC +Q EF C C S+++
Sbjct: 72 VDCDNGSDEQGCPPKTC-SQDEFRCHD-------------------------GKCISRQF 105
Query: 141 LCDGKKHCPRGEEGPDERHCP 161
+CD + C +G DE CP
Sbjct: 106 VCDSDRDCL---DGSDEASCP 123
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
K+ N C +NGGCSH+C GY C CPD +
Sbjct: 290 KECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 324
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 201 bits (510), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 165/306 (53%), Gaps = 34/306 (11%)
Query: 158 RHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNT-------------------- 197
RH ++++L +YT++I NL NV+A+D N + W+
Sbjct: 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 68
Query: 198 -HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVH 256
++ +Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V
Sbjct: 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 128
Query: 257 PRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFI 316
P F++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I
Sbjct: 129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188
Query: 317 ESSDLDGSRRQQVI--TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSG 374
S D++G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ +
Sbjct: 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248
Query: 375 LHFPMNIRSYHPHRQPNYQSHCAPKV-----CSHICLP----NKH--RFTCQCPLGLTLS 423
L P ++ +H QP + C C ++CLP N H +FTC CP G+ L+
Sbjct: 249 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 308
Query: 424 PDNKSC 429
D +SC
Sbjct: 309 RDMRSC 314
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 29/322 (9%)
Query: 709 FLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRF 768
+L + ++R+++LD Y ++P L+ V ++D + + IYWSD+S++ I +
Sbjct: 3 YLFFTNRHEVRKMTLD-RSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 769 D----MTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
D ++ + ++ D+ + +AVD I IYWTD T+ V+D G K LF N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSD 883
+PR+IVV G M W DW T +I+ ++G + TE I WP+ + +D
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS 175
Query: 884 NPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRA 940
+LYWVD+ H+I + G K + +HP++L V + V+WTD+ + I+ A
Sbjct: 176 G-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 941 NKYDVKDIVEFAQ-VDRPWLVRAAQNISFPNACG------SNNGGCSHLCLRNPT----- 988
N+ D+ A+ + P + N++ P +NGGC +LCL P
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS 294
Query: 989 -NFTCACPTGILLSADRRSCFS 1009
FTCACP G+LL+ D RSC +
Sbjct: 295 PKFTCACPDGMLLARDMRSCLT 316
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 157/317 (49%), Gaps = 57/317 (17%)
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVE-----NGEI 491
L + + ++R ++T + +++P N+++VVA+ E A++ +YW+D+ + ++
Sbjct: 4 LFFTNRHEVR--KMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 492 NRAHINGTFQYN-VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQ 550
+RAH G Y+ VI + + P G+A+DW + +YWT+S + V++ G LF +
Sbjct: 60 DRAH--GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 117
Query: 551 NLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSR 610
N S+PR I V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + R
Sbjct: 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 177
Query: 611 LYWANVGLKTIEFTNLDGTRKQTLIA----LHH---LKVMTKVVGLTDI---DIFHRRR- 659
LYW + L +I +++G ++T++ L H L V V TDI IF R
Sbjct: 178 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 237
Query: 660 ---------------------SKKTHPCNEN--------NGGCSHLCLIAPK-----DGI 685
T P N NGGC +LCL AP+
Sbjct: 238 TGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKF 297
Query: 686 RCVCPAGNLLREDRRTC 702
C CP G LL D R+C
Sbjct: 298 TCACPDGMLLARDMRSC 314
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 153/330 (46%), Gaps = 51/330 (15%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM--------- 1064
+L +T+R V R+++LD ++ T P + + D + N IY++D+
Sbjct: 3 YLFFTNRHEV-RKMTLDRSEY---TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 1065 --RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122
R+ + ++D S I+ D +DW+ +NIY+ DS + T++VA + G
Sbjct: 59 LDRAHGVSSYDTVISRDIQA--------PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 110
Query: 1123 KKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAF 1181
+K L + +P AI V P G ++++ WG +P KI+K L+G LV E++ +
Sbjct: 111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPA-KIKKGGLNGVDIYSLVTENIQW 165
Query: 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK----VAPYGLSVRQSPGKAFI 1237
PN + +D RL+W DS I D G +RK ++ P+ L+V F
Sbjct: 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-------FE 218
Query: 1238 VELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN---QEDFLNIKAISASKQLTW-NPCAQ 1293
+++WTD ++ A + + DV+L+ N ED + ++ + + W
Sbjct: 219 DKVFWTDIINEAIFSANRLTGS---DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTL 275
Query: 1294 DNGGCSHLCF----YKGRTKGYVCGCPDDL 1319
NGGC +LC + + C CPD +
Sbjct: 276 SNGGCQYLCLPAPQINPHSPKFTCACPDGM 305
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 165/306 (53%), Gaps = 34/306 (11%)
Query: 158 RHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNT-------------------- 197
RH ++++L +YT++I NL NV+A+D N + W+
Sbjct: 91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150
Query: 198 -HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVH 256
++ +Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V
Sbjct: 151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 210
Query: 257 PRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFI 316
P F++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 317 ESSDLDGSRRQQVI--TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSG 374
S D++G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ +
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
Query: 375 LHFPMNIRSYHPHRQPNYQSHCAPKV-----CSHICLP----NKH--RFTCQCPLGLTLS 423
L P ++ +H QP + C C ++CLP N H +FTC CP G+ L+
Sbjct: 331 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 390
Query: 424 PDNKSC 429
D +SC
Sbjct: 391 RDMRSC 396
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 123/407 (30%), Positives = 190/407 (46%), Gaps = 70/407 (17%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----------TCSE---------- 704
C +NNGGCSH+C K G C+CP G L RR TCS+
Sbjct: 3 CLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 61
Query: 705 -------------------NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVD 745
+L + ++R+++LD Y ++P L+ V ++D
Sbjct: 62 CQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD-RSEYTSLIP--NLRNVVALD 118
Query: 746 VDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYWTDM 801
+ + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYWTD
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178
Query: 802 NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861
T+ V+D G K LF N +PR+IVV G M W DW T +I+ ++G
Sbjct: 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNG 234
Query: 862 TNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SHP 917
+ TE I WP+ + +D +LYWVD+ H+I + G K + +HP
Sbjct: 235 VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 293
Query: 918 YTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQ-VDRPWLVRAAQNISFP---NACG 973
++L V + V+WTD+ + I+ AN+ D+ A+ + P + N++ P N C
Sbjct: 294 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCE 353
Query: 974 S---NNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRT 1011
+NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 354 RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA 400
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 174/357 (48%), Gaps = 58/357 (16%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE-ELLIYARQKDLRISQLTEPSPT 456
P CS +C+ + + CQC G L P K+C L + + ++R ++T
Sbjct: 46 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR--KMTLDRSE 103
Query: 457 FETVLPVMNVKSVVAIAWESANDSLYWADVE-----NGEINRAHINGTFQYN-VIRHNTK 510
+ +++P N+++VVA+ E A++ +YW+D+ + +++RAH G Y+ VI + +
Sbjct: 104 YTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQ 159
Query: 511 KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWC 570
P G+A+DW + +YWT+S + V++ G LF +N S+PR I V+P+ G MYW
Sbjct: 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
Query: 571 SWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTR 630
WG KI+ G++G + L +++++ P G+ +DL + RLYW + L +I +++G
Sbjct: 220 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279
Query: 631 KQTLIA----LHH---LKVMTKVVGLTDI---DIFHRRR--------------------- 659
++T++ L H L V V TDI IF R
Sbjct: 280 RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339
Query: 660 -SKKTHPCNEN--------NGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTC 702
T P N NGGC +LCL AP+ C CP G LL D R+C
Sbjct: 340 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 177/414 (42%), Gaps = 91/414 (21%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR------------------------ 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 60
Query: 1006 ---------------SCFS-RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIF 1049
+C + + +L +T+R V R+++LD ++ T P + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV-RKMTLDRSEY---TSLIPNLRNVVA 116
Query: 1050 FDYHYSKNLIYFADM-----------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW 1098
D + N IY++D+ R+ + ++D S I+ D +DW
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA--------PDGLAVDW 168
Query: 1099 VANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157
+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++ WG +P
Sbjct: 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TP 224
Query: 1158 TTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV 1217
KI+K L+G LV E++ +PN + +D RL+W DS I D G +RK +
Sbjct: 225 A-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 283
Query: 1218 ISK----VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN--- 1270
+ P+ L+V F +++WTD ++ A + + DV+L+ N
Sbjct: 284 LEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIFSANRLTGS---DVNLLAENLLS 333
Query: 1271 QEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCF----YKGRTKGYVCGCPDDL 1319
ED + ++ + + W NGGC +LC + + C CPD +
Sbjct: 334 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 387
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 1 NECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 30
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 165/306 (53%), Gaps = 34/306 (11%)
Query: 158 RHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNT-------------------- 197
RH ++++L +YT++I NL NV+A+D N + W+
Sbjct: 131 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 190
Query: 198 -HIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVH 256
++ +Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V
Sbjct: 191 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 250
Query: 257 PRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFI 316
P F++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I
Sbjct: 251 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 310
Query: 317 ESSDLDGSRRQQVI--TKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSG 374
S D++G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ +
Sbjct: 311 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 370
Query: 375 LHFPMNIRSYHPHRQPNYQSHCAPKV-----CSHICLP----NKH--RFTCQCPLGLTLS 423
L P ++ +H QP + C C ++CLP N H +FTC CP G+ L+
Sbjct: 371 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 430
Query: 424 PDNKSC 429
D +SC
Sbjct: 431 RDMRSC 436
Score = 168 bits (425), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 192/410 (46%), Gaps = 70/410 (17%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----------TCSE------- 704
T+ C +NNGGCSH+C K G C+CP G L RR TCS+
Sbjct: 40 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEG 98
Query: 705 ----------------------NPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVA 742
+L + ++R+++LD Y ++P L+ V
Sbjct: 99 GYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD-RSEYTSLIP--NLRNVV 155
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYW 798
++D + + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYW
Sbjct: 156 ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 215
Query: 799 TDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH 858
TD T+ V+D G K LF N +PR+IVV G M W DW T +I+
Sbjct: 216 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGG 271
Query: 859 MDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ--- 914
++G + TE I WP+ + +D +LYWVD+ H+I + G K +
Sbjct: 272 LNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 330
Query: 915 SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQ-VDRPWLVRAAQNISFP---N 970
+HP++L V + V+WTD+ + I+ AN+ D+ A+ + P + N++ P N
Sbjct: 331 AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN 390
Query: 971 ACGS---NNGGCSHLCLRNPT------NFTCACPTGILLSADRRSCFSRT 1011
C +NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 391 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEA 440
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 174/357 (48%), Gaps = 58/357 (16%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE-ELLIYARQKDLRISQLTEPSPT 456
P CS +C+ + + CQC G L P K+C L + + ++R ++T
Sbjct: 86 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR--KMTLDRSE 143
Query: 457 FETVLPVMNVKSVVAIAWESANDSLYWADVE-----NGEINRAHINGTFQYN-VIRHNTK 510
+ +++P N+++VVA+ E A++ +YW+D+ + +++RAH G Y+ VI + +
Sbjct: 144 YTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQ 199
Query: 511 KPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWC 570
P G+A+DW + +YWT+S + V++ G LF +N S+PR I V+P+ G MYW
Sbjct: 200 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 259
Query: 571 SWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTR 630
WG KI+ G++G + L +++++ P G+ +DL + RLYW + L +I +++G
Sbjct: 260 DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 319
Query: 631 KQTLIA----LHH---LKVMTKVVGLTDI---DIFHRRR--------------------- 659
++T++ L H L V V TDI IF R
Sbjct: 320 RKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 379
Query: 660 -SKKTHPCNEN--------NGGCSHLCLIAPK-----DGIRCVCPAGNLLREDRRTC 702
T P N NGGC +LCL AP+ C CP G LL D R+C
Sbjct: 380 FHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 436
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/414 (25%), Positives = 177/414 (42%), Gaps = 91/414 (21%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR------------------------ 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGY 100
Query: 1006 ---------------SCFS-RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIF 1049
+C + + +L +T+R V R+++LD ++ T P + +
Sbjct: 101 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV-RKMTLDRSEY---TSLIPNLRNVVA 156
Query: 1050 FDYHYSKNLIYFADM-----------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW 1098
D + N IY++D+ R+ + ++D S I+ D +DW
Sbjct: 157 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA--------PDGLAVDW 208
Query: 1099 VANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157
+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++ WG +P
Sbjct: 209 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TP 264
Query: 1158 TTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIV 1217
KI+K L+G LV E++ +PN + +D RL+W DS I D G +RK +
Sbjct: 265 A-KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 323
Query: 1218 ISK----VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN--- 1270
+ P+ L+V F +++WTD ++ A + + DV+L+ N
Sbjct: 324 LEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIFSANRLTGS---DVNLLAENLLS 373
Query: 1271 QEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCF----YKGRTKGYVCGCPDDL 1319
ED + ++ + + W NGGC +LC + + C CPD +
Sbjct: 374 PEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 427
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
K+ N C +NGGCSH+C GY C CPD +
Sbjct: 36 KECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 70
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 15/194 (7%)
Query: 197 THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVH 256
T I+ + S +++D + +FWTD+ R+E +DG R++L + PR ++
Sbjct: 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130
Query: 257 PRDAFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHF 315
P ++WTDW + PKIE MDG+NR+++ +N+ PNGLT D +L W +A H
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 316 IESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGL 375
E + R++V+ +GL +PF +T Y +++TDW T S+ + + + + T
Sbjct: 191 AECLNPAQPGRRKVL-EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT----- 244
Query: 376 HFPMNIRSYHPHRQ 389
+HPH+Q
Sbjct: 245 --------FHPHKQ 250
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 1/161 (0%)
Query: 466 VKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLY 525
K ++ +A++ + +YW D+ I RA ++G +IR + P G+A+D ++
Sbjct: 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIF 94
Query: 526 WTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWG-DLHKIEMAGMD 584
WT+S+ + IEV+ +DGT +LF L PR I +P+ G +YW W D KIE + MD
Sbjct: 95 WTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154
Query: 585 GSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625
G++R ILA D+L P GL D +S+L W + G E N
Sbjct: 155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 16/230 (6%)
Query: 710 LLVSQTDKIRQISLD------VEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTI 763
LL +QT KI ++ L+ E + + +P K++ + D ++ +YW+DISE +I
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPA---KVIIGLAFDCVDKVVYWTDISEPSI 60
Query: 764 ERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLN 823
R ++ DL E IA+D +GR I+WTD I V+ +DG +VLF
Sbjct: 61 GRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG 120
Query: 824 LYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYS 882
L PR IV G + W DW+R N +IE +HMDGTNR + + + P+ L D +
Sbjct: 121 LVNPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNLGLPNGLTFD-A 176
Query: 883 DNPKLYWVDTSKHTIEYKTLAT-GRAKRAYAVQSHPYTLTVLDYYVYWTD 931
+ +L WVD H E A GR K +Q +P+ +T +Y+TD
Sbjct: 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSYGKNLYYTD 225
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSHW 1150
+ +D + I++ DSQ+ I VA+ DG +++L + L+ P I P RG L+++ W
Sbjct: 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW 141
Query: 1151 GLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210
N KIE ++DG+ R +L +++L PN L D +L W D+ R E +
Sbjct: 142 ----NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPA 197
Query: 1211 GRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAMSVV 1251
R+ V+ + P+ ++ S GK LY+TDW+ SV+
Sbjct: 198 QPGRRKVLEGLQYPFAVT---SYGK----NLYYTDWKTNSVI 232
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 259 DAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIES 318
D V+WTD + P I R + G I+ +++ P G+ +D ++WT+++ IE
Sbjct: 47 DKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV 105
Query: 319 SDLDGSRRQQVITKGLPHPFGITL--YEDFVFWTDWH 353
+ +DG++R+ + GL +P GI ++WTDW+
Sbjct: 106 AKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN 142
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 1161 IEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK 1220
I + L G T ++ +DL P +A+D R +FW DS RIE G R+++
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 1221 --VAPYGLSVRQSPGKAFIVELYWTDW 1245
V P G+ G LYWTDW
Sbjct: 120 GLVNPRGIVTDPVRGN-----LYWTDW 141
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 459 TVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAID 518
T + ++ S IA + +++W D + I A ++GT + + P G+ D
Sbjct: 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130
Query: 519 WRTNKLYWTE--SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLH 576
LYWT+ + IE S++DGT +L NL P + + + W G H
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-TH 189
Query: 577 KIE 579
+ E
Sbjct: 190 RAE 192
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 558 IAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVG 617
+A + + ++YW + I A + G + L +P G+A+D ++W +
Sbjct: 41 LAFDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ 99
Query: 618 LKTIEFTNLDGTRKQTLI 635
L IE +DGT+++ L
Sbjct: 100 LDRIEVAKMDGTQRRVLF 117
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 6 PVLWVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ--------ASPPK 57
PVL G P +CN + CIP W CDN+ DCE G DE PQ
Sbjct: 3 PVLTCG-----PASFQCNSS-TCIPQLWACDNDPDCEDGSDEW--PQRCRGLYVFQGDSS 54
Query: 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CS E C +G CI +W CDG PDC DE NC
Sbjct: 55 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 90
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 53 ASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90
SP C P +C + CI + W CD PDC G DE
Sbjct: 1 GSPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 38
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCS 85
G CI Q+ CD++ DC G DE CP + C P +C + CI + W CD PDC
Sbjct: 13 GKCISRQFVCDSDRDCLDGSDEASCPVLT----CGPASFQCNSSTCIPQLWACDNDPDCE 68
Query: 86 LGEDE 90
G DE
Sbjct: 69 DGSDE 73
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 4 SVPVLWVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47
S PVL G P +CN + CIP W CDN+ DCE G DE
Sbjct: 36 SCPVLTCG-----PASFQCN-SSTCIPQLWACDNDPDCEDGSDE 73
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
K CS E RC G CI + ++CD DC G DE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLCDGIPD 83
G CI +W CD +C+ G DE + + C + C CI + W CDG D
Sbjct: 18 GKCISYKWVCDGSAECQDGSDESQ--ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVD 75
Query: 84 CSLGEDERNC 93
C G DE+ C
Sbjct: 76 CDNGSDEQGC 85
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 28/105 (26%)
Query: 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE--RNCNKTCDAQKEFSCMKLAEPRPTE 115
+C +E +C G CI W+CDG +C G DE C +FSC
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC---------- 56
Query: 116 VGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
G + C + + CDG+ C + G DE+ C
Sbjct: 57 -GGRV------------NRCIPQFWRCDGQVDC---DNGSDEQGC 85
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKC 50
R CIP W+CD + DC+ G DE C
Sbjct: 59 RVNRCIPQFWRCDGQVDCDNGSDEQGC 85
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5,
Calcium-Coordinating
Length = 37
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CS E C +G CI +W CDG PDC DE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 41
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCSH+C K G C+CP G L RR
Sbjct: 5 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRR 41
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 6 NECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 35
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 51 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCSH+C K G C+CP G L RR
Sbjct: 29 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRR 65
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 30 NECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 59
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 75 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
Length = 82
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 38
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCSH+C K G C+CP G L RR
Sbjct: 2 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRR 38
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 3 NECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 32
Score = 33.5 bits (75), Expect = 0.83, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 48 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCSH+C + C CP G L A RR
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR 38
Score = 38.5 bits (88), Expect = 0.029, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCSH+C K G C+CP G L RR
Sbjct: 2 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRR 38
Score = 35.4 bits (80), Expect = 0.21, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCSH+C GY C CPD +
Sbjct: 3 NECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 32
Score = 33.5 bits (75), Expect = 0.87, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 48 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding
Domain Of Tva
Length = 47
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 59 CSPDEHRCTT-----GHCILKTWLCDGIPDCSLGEDERNC 93
C P + RC+ G C + WLCDG PDC G DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKC 50
G C P W CD DC+ G DE C
Sbjct: 22 GECYPQDWLCDGHPDCDDGRDEWGC 46
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKC 50
++G CIP+Q+QC+ E DC GEDE+ C
Sbjct: 249 KSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 35 CDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CD DC DE+ C K C C +G CI + C+G DC GEDE C
Sbjct: 223 CDGINDCGDQSDELCC------KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCS++C + C CP G L A RR
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 41
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCS++C K G C+CP G L RR
Sbjct: 5 TNECLDNNGGCSYVC-NDLKIGYECLCPDGFQLVAQRR 41
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 51 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCS++C GY C CPD +
Sbjct: 6 NECLDNNGGCSYVC--NDLKIGYECLCPDGFQ 35
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 59 CSPDEHRC--TTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEF 103
C EH+C CI K ++CDG DC GEDE++C A +F
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKF 101
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCS++C + C CP G L A RR
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR 700
T+ C +NNGGCS++C K G C+CP G L RR
Sbjct: 29 TNECLDNNGGCSYVC-NDLKIGYECLCPDGFQLVAQRR 65
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
P CS +C+ + + CQC G L P K+C
Sbjct: 75 PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 33.5 bits (75), Expect = 0.86, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
N C +NGGCS++C GY C CPD +
Sbjct: 30 NECLDNNGGCSYVC--NDLKIGYECLCPDGFQ 59
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat
Of Human Megalin
Length = 52
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT 96
P C ++ C CI K W+CD DC G DE+NCN T
Sbjct: 4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNST 44
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 38.9 bits (89), Expect = 0.018, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTR 1012
C +NGGC C + C+C G +L D +SC S R
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER 41
Score = 33.9 bits (76), Expect = 0.71, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC C + +RC C G +L +D ++C
Sbjct: 1 CSLDNGGCDQFCR-EERSEVRCSCAHGYVLGDDSKSC 36
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat
From The Low-Density Lipoprotein Receptor
Length = 48
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTC 97
+C +E +C G CI W+CDG +C G DE +TC
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDES--QETC 44
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 38.5 bits (88), Expect = 0.026, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 57 KKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDE 90
K C P C H C+ + WLCDG DC+ G DE
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 35.0 bits (79), Expect = 0.31, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47
P C T C+P +W CD + DC G DE
Sbjct: 11 PSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 38.1 bits (87), Expect = 0.031, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 53 ASPPKKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDE 90
S K C P C H C+ + WLCDG DC+ G DE
Sbjct: 1 GSEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47
P C T C+P +W CD + DC G DE
Sbjct: 9 PSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 936 KIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACP 995
K + + + A+ R W + N C NNGGCSH+C + C CP
Sbjct: 13 KCHSGECITLDKVCNMARDCRDWSDEPIKECG-TNECLDNNGGCSHVCNDLKIGYECLCP 71
Query: 996 TGILLSADRRS 1006
G L A RR
Sbjct: 72 DGFQLVAQRRC 82
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 663 THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT 701
T+ C +NNGGCSH+C K G C+CP G L RR
Sbjct: 45 TNECLDNNGGCSHVC-NDLKIGYECLCPDGFQLVAQRRC 82
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 1284 KQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
K+ N C +NGGCSH+C GY C CPD +
Sbjct: 41 KECGTNECLDNNGGCSHVC--NDLKIGYECLCPDGFQ 75
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of
Tva
Length = 47
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 57 KKCSPDEHRCTT-----GHCILKTWLCDGIPDCSLGEDERNCNKT 96
+C P + RC+ G C + WLCDG PDC G DE C +
Sbjct: 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 37.7 bits (86), Expect = 0.044, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKC 50
R CIP W+CD + DC+ G DE C
Sbjct: 17 RVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 71 CILKTWLCDGIPDCSLGEDERNC 93
CI + W CDG DC G DE+ C
Sbjct: 21 CIPQFWRCDGQVDCDNGSDEQGC 43
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3
From The Low Density Lipoprotein Receptor-Related
Protein (Lrp) . Evidence For Specific Binding To The
Receptor Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 37.4 bits (85), Expect = 0.063, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 54 SPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90
SPP+ C P E C CI + W CDG DC DE
Sbjct: 2 SPPQ-CQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 36.6 bits (83), Expect = 0.095, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
+C G CIP +W+CD + DC DE C
Sbjct: 10 QCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 56 PKKCSPDEHRCT-TGHCILKTWLCDGIPDCSLGEDERNC 93
P C DE +C G CI W CDG DC DE++C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C H CLP + +TC C G L D+K C
Sbjct: 13 CQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 978 GCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
GC H CL ++TC+C G L D + C
Sbjct: 12 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC 41
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 63/289 (21%)
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCS 571
P+GVA+D N +E Y + T T+L + L +P+ +AV+ G +Y
Sbjct: 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTD 84
Query: 572 WGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRK 631
+ + ++ +++ +L D L P GLA+D + + +Y A+ G + G++
Sbjct: 85 FNN--RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRV-VKLAAGSKT 140
Query: 632 QTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPA 691
QT++ GL D DG+ V +
Sbjct: 141 QTVLPF---------TGLND------------------------------PDGV-AVDNS 160
Query: 692 GNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNE 751
GN + V+ TD R + L+ E +VLP + + VD
Sbjct: 161 GN----------------VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT 204
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTD 800
+Y ++ + + ++ T L LN ++AVD+ R +Y D
Sbjct: 205 -VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVAD 251
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 28 CIPAQWQCDNEFDCEMGEDEMKC 50
CIP W+CD E DC+ GEDE C
Sbjct: 17 CIPVSWRCDGENDCDSGEDEENC 39
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 70 HCILKTWLCDGIPDCSLGEDERNC 93
CI +W CDG DC GEDE NC
Sbjct: 16 QCIPVSWRCDGENDCDSGEDEENC 39
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double
Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of
Lrp, Cr56, And First Domain Of Receptor Associated
Protein, Rap- D1
Length = 82
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSP-DEHRCTTGHCILKTWLCDGIPD 83
+G CIP W CD + DC DE + C P + C G CI W CD D
Sbjct: 14 SGRCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLTQFTCNNGRCININWRCDNDND 70
Query: 84 CSLGEDERNC 93
C DE C
Sbjct: 71 CGDNSDEAGC 80
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 36.2 bits (82), Expect = 0.13, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP 55
KC +CI ++++CD +DC DE CP P
Sbjct: 13 KCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPP 47
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 59 CSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDERNC 93
C+ + +C G CI + CDG+ DC DE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 28 CIPAQWQCDNEFDCEMGEDEMKC 50
CIP W+CD E DC+ GEDE C
Sbjct: 15 CIPVSWRCDGENDCDSGEDEENC 37
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 70 HCILKTWLCDGIPDCSLGEDERNC 93
CI +W CDG DC GEDE NC
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C H CLP + +TC C G L D+K C
Sbjct: 54 CQHFCLPGQESYTCSCAQGYRLGEDHKQC 82
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 978 GCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
GC H CL ++TC+C G L D + C
Sbjct: 53 GCQHFCLPGQESYTCSCAQGYRLGEDHKQC 82
>pdb|2AO7|A Chain A, Adam10 Disintegrin And Cysteine- Rich Domain
Length = 192
Score = 35.0 bits (79), Expect = 0.25, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 34 QCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCIL--KTWLCDGIPDCS 85
QC +E + + E K + P K+CSP + C T HC KT C DC+
Sbjct: 24 QCKDECCYDANQPEGKKCKLKPGKQCSPSQGPCCTAHCAFKSKTEKCRDDSDCA 77
>pdb|2WPH|E Chain E, Factor Ixa Superactive Triple Mutant
pdb|2WPI|E Chain E, Factor Ixa Superactive Double Mutant
pdb|2WPJ|E Chain E, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|E Chain E, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|E Chain E, Factor Ixa Superactive Triple Mutant, Edta-Soaked
pdb|2WPM|E Chain E, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 59
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN---PSKFLLVSQTDKI 718
CN NG C C + + + C C G L E++++C P + VSQT K+
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSKL 57
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 958 WLVRAAQ-NISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
W R Q +SF N C +NGGC+H CL C+C G L D C
Sbjct: 43 WEGRFCQREVSFLN-CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC+H CL RC C G L +D C
Sbjct: 57 CSLDNGGCTHYCL-EEVGWRRCSCAPGYKLGDDLLQC 92
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 958 WLVRAAQ-NISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
W R Q +SF N C +NGGC+H CL C+C G L D C
Sbjct: 36 WEGRFCQREVSFLN-CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 85
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC+H CL RC C G L +D C
Sbjct: 50 CSLDNGGCTHYCL-EEVGWRRCSCAPGYKLGDDLLQC 85
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 62 DEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT 96
++ RC +G CI + C+G DC DER+C +T
Sbjct: 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155
>pdb|3KCG|L Chain L, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 59
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN---PSKFLLVSQTDK 717
CN NG C C + + + C C G L E++++C P + VSQT K
Sbjct: 5 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK 59
>pdb|1RFN|B Chain B, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|B Chain B, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|D Chain D, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|B Chain B, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 57
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN---PSKFLLVSQTDK 717
CN NG C C + + + C C G L E++++C P + VSQT K
Sbjct: 3 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPFPCGRVSVSQTSK 57
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module
From Ldlr Determined With Haddock
Length = 40
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90
C P +C + CI + W CD PDC G DE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47
P +CN + CIP W CDN+ DCE G DE
Sbjct: 4 PASFQCNSS-TCIPQLWACDNDPDCEDGSDE 33
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 398 PKVCSH-ICLPNKHRFTCQCPLGLTLSPDNKSC 429
P VC + +C+ + F CQCP G+TL + C
Sbjct: 114 PGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 968 FPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF 1008
FP C NG LC+ +F C CP+G+ L A R C
Sbjct: 113 FPGVC--KNG----LCVNTRGSFKCQCPSGMTLDATGRICL 147
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT 96
CS + +C +G CI + W CDG DC DE + N T
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By
Its Receptors
Length = 44
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 53 ASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK 95
+ P K+C D+ +C CI W CD DC DE +C K
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF-------------SRTREFLLYT 1018
C +NG C C + C+C G L+ + ++C R R T
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQAT 103
Query: 1019 SRFG----VIRRISLDTADLLPVTLPF 1041
S G I D ADL P PF
Sbjct: 104 SSSGEAPDSITWKPYDAADLDPTENPF 130
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 17/87 (19%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCF-------------SRTREFLLYT 1018
C +NG C C + C+C G L+ + ++C R R T
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQAT 143
Query: 1019 SRFG----VIRRISLDTADLLPVTLPF 1041
S G I D ADL P PF
Sbjct: 144 SSSGEAPDSITWKPYDAADLDPTENPF 170
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 979 CSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVI 1024
C H C + C+C G +L D R+C + L+T R GVI
Sbjct: 134 CDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSD-NLFTQRTGVI 178
>pdb|3AQ7|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
pdb|3AQ7|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Y25f Mutant, Fe(Iii) Form
Length = 121
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIK 369
E HF +++D+D +QQ TD+ T + N Y G+N+
Sbjct: 32 ERVKHFFKNTDMDHQTKQQ---------------------TDFLTMLLGGPNHYKGKNMT 70
Query: 370 TVHSGLHFPMNIRSYH 385
H G MN+++ H
Sbjct: 71 EAHKG----MNLQNLH 82
>pdb|3AQ5|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ5|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Ii)-O2 Form
pdb|3AQ6|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
pdb|3AQ6|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Fe(Iii) Form
Length = 121
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIK 369
E HF +++D+D +QQ TD+ T + N Y G+N+
Sbjct: 32 ERVKHFFKNTDMDHQTKQQ---------------------TDFLTMLLGGPNHYKGKNMT 70
Query: 370 TVHSGLHFPMNIRSYH 385
H G MN+++ H
Sbjct: 71 EAHKG----MNLQNLH 82
>pdb|3AQ8|A Chain A, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
pdb|3AQ8|B Chain B, Crystal Structure Of Truncated Hemoglobin From Tetrahymena
Pyriformis, Q46e Mutant, Fe(Iii) Form
Length = 121
Score = 31.2 bits (69), Expect = 4.4, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 25/76 (32%)
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIK 369
E HF +++D+D +QQ TD+ T + N Y G+N+
Sbjct: 32 ERVKHFFKNTDMDHETKQQ---------------------TDFLTMLLGGPNHYKGKNMT 70
Query: 370 TVHSGLHFPMNIRSYH 385
H G MN+++ H
Sbjct: 71 EAHKG----MNLQNLH 82
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 979 CSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVI 1024
C H C + C+C G +L D R+C + L+T R GVI
Sbjct: 134 CDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSD-NLFTQRTGVI 178
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEV-----SNLDGTYPTLLFWQNLSEPRDIAVNPIGGI 566
P G I K+Y + N + + +N+ T P S P+ +AV+P G
Sbjct: 34 PXGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG------SSPQGVAVSPDGKQ 87
Query: 567 MYWCSWGDLHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625
+Y + ++ +D + + + + K+P GLA+ + +LY N G KT+ N
Sbjct: 88 VYVTNXA---SSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVIN 144
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 30.4 bits (67), Expect = 7.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 46 CSLDNGDCDQFCHEEQASVVCSCARGYTLADNGKAC 81
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-1-
Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 45 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 80
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 44 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 79
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 46 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 81
>pdb|3KL6|B Chain B, Discovery Of Tetrahydropyrimidin-2(1h)-One Derivative Tak-44
Potent, Selective And Orally Active Factor Xa Inhibitor
Length = 57
Score = 30.4 bits (67), Expect = 7.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 7 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 42
>pdb|2RA0|L Chain L, X-Ray Structure Of Fxa In Complex With 7-Fluoroindazole
Length = 51
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
>pdb|1FJS|L Chain L, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031)
Complexed With Factor Xa
pdb|1V3X|B Chain B, Factor Xa In Complex With The Inhibitor 1-[6-Methyl-4,5,6,7-
Tetrahydrothiazolo(5,4-C)pyridin-2-Yl] Carbonyl-2-
Carbamoyl-4-(6-Chloronaphth-2-Ylsulphonyl)piperazine
pdb|2FZZ|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-Amino-1,2-
Benzisoxazol-5-Yl)-6-(2'-(((3r)-3-Hydroxy-1-Pyrrolidinyl)
Methyl)-4-Biphenylyl)-3-(Trifluoromethyl)-1,4,5,6-
Tetrahydro-7h-Pyrazolo[3,4-C]pyridin-7-One
pdb|2G00|L Chain L, Factor Xa In Complex With The Inhibitor 3-(6-(2'-
((Dimethylamino)methyl)-4-Biphenylyl)-7-Oxo-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3,4-
C]pyridin-1-Yl)benzamide
pdb|2P93|L Chain L, Factor Xa In Complex With The Inhibitor 5-Chloro-N-(2-(4-(2-
Oxopyridin-1(2h)-Yl)benzamido)ethyl)thiophene-2-
Carboxamide
pdb|2P94|L Chain L, Factor Xa In Complex With The Inhibitor 3-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido)cyclohexyl)-1h-
Indole-6-Carboxamide
pdb|2P95|L Chain L, Factor Xa In Complex With The Inhibitor 5-Chloro-N-((1r,2s)-
2-(4-(2-Oxopyridin-1(2h)-Yl)benzamido) Cyclopentyl)
Thiophene-2-Carboxamide
pdb|2P16|L Chain L, Factor Xa In Complex With The Inhibitor Apixaban (Bms-
562247) Aka 1-(4-Methoxyphenyl)-7-Oxo-6-(4-(2-Oxo-1-
Piperidinyl)phenyl)-4,5,6,7-Tetrahydro-1h-Pyrazolo[3, 4-
C]pyridine-3-Carboxamide
pdb|2P3U|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-N-(4-Chloro-2-{[(5-Chloropyridin-2-Yl)
Amino]carbonyl}-6-Methoxyphenyl)-4-[(1-Methyl-1h-
Imidazol- 2-Yl)methyl]thiophene-2-Carboxamide {pfizer
320663}
pdb|2P3T|A Chain A, Crystal Structure Of Human Factor Xa Complexed With 3-
Chloro-4-(2-Methylamino-Imidazol-1-Ylmethyl)-Thiophene-2-
Carboxylic Acid [4-Chloro-2-(5-Chloro-Pyridin-2-
Ylcarbamoyl)-6-Methoxy-Phenyl]-Amide
pdb|3CEN|L Chain L, Factor Xa In Complex With The Inhibitor N-(2-(((5-Chloro-2-
Pyridinyl) Amino)sulfonyl)phenyl)-4-(2-Oxo-1(2h)-
Pyridinyl)benzamide
pdb|3CS7|L Chain L, Factor Xa In Complex With The Inhibitor 1-(4-Methoxyphenyl)-
6-(4-(1-(Pyrrolidin-1-Ylmethyl)cyclopropyl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3FFG|L Chain L, Factor Xa In Complex With The Inhibitor (R)-6-(2'-((3-
Hydroxypyrrolidin-1-Yl)methyl)biphenyl-4-Yl)-1-(3-(5-Oxo-
4, 5-Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-3-
(Trifluoromethyl)-5,6-Dihydro-1h-Pyrazolo[3,4-C]pyridin-
7(4h)-One
pdb|3KQB|L Chain L, Factor Xa In Complex With The Inhibitor N-(3-Fluoro-2'-
(Methylsulfonyl)biphenyl-4-Yl)-1-(3-(5-Oxo-4,
5-Dihydro-1h-
Triazol-3-Yl)phenyl)-3-(Trifluoromethyl)-1h-
Pyrazole-5-Car
pdb|3KQC|L Chain L, Factor Xa In Complex With The Inhibitor 6-(2'- (Methylsulfon
Biphenyl-4-Yl)-1-(3-(5-Oxo-4,5-Dihydro-1h-
1,2,4-Triazol-3- Phenyl)-3-(Trifluoromethyl)-5,6-
Dihydro-1h-Pyrazolo[3,4-C] 7(4h)-One
pdb|3KQD|L Chain L, Factor Xa In Complex With The Inhibitor 1-(3-(5-Oxo-4,5- Dih
2,4-Triazol-3-Yl)phenyl)-6-(2'-(Pyrrolidin-1-
Ylmethyl)biph Yl)-3-(Trifluoromethyl)-5,6-Dihydro-
1h-Pyrazolo[3,4-C]pyri One
pdb|3KQE|L Chain L, Factor Xa In Complex With The Inhibitor 3-Methyl-1-(3-(5- Ox
Dihydro-1h-1,2,4-Triazol-3-Yl)phenyl)-6-(2'-
(Pyrrolidin-1- Biphenyl-4-Yl)-5,6-Dihydro-1h-
Pyrazolo[3,4-C]pyridin-7(4h)
pdb|3M36|L Chain L, Factor Xa In Complex With The Inhibitor 1-[3-(Aminomethyl)
Phenyl]-N-[3-Fluoro-2'-(Methylsulfonyl)biphenyl-4-Yl]-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc423)
pdb|3M37|L Chain L, Factor Xa In Complex With The Inhibitor 1-[2-(Aminomethyl)
Phenyl]-N-(3-Fluoro-2'-Sulfamoylbiphenyl-4-Yl)-3-
(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide (Dpc602)
pdb|1Z6E|L Chain L, Factor Xa In Complex With The Inhibitor
1-(3'-Amino-1,2-Benzisoxazol-
5'-Yl)-N-(4-(2'-((Dimethylamino)methyl)-1h-Imidazol-1-
Yl)-2-
Fluorophenyl)-3-(Trifluoromethyl)-1h-Pyrazole-5-
Carboxamide (Razaxaban; Dpc906; Bms-561389)
Length = 52
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|2PR3|B Chain B, Factor Xa Inhibitor
pdb|2Q1J|B Chain B, The Discovery Of Glycine And Related Amino Acid-Based Factor
Xa Inhibitors
pdb|2PHB|B Chain B, An Orally Efficacious Factor Xa Inhibitor
pdb|2W3I|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-disubstituted
Pyrrolidine-1,2-dicarboxamide Inhibitor 2
pdb|2W3K|B Chain B, Crystal Structure Of Fxa In Complex With 4,4-Disubstituted
Pyrrolidine-1,2-Dicarboxamide Inhibitor 1
pdb|3LIW|B Chain B, Factor Xa In Complex With (R)-2-(1-Adamantylcarbamoylamino)-
3-(3-Carbamidoyl-Phenyl)-N-Phenethyl-Propionic Acid Amide
Length = 51
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 2 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 37
>pdb|1MQ5|L Chain L, Crystal Structure Of
3-chloro-n-[4-chloro-2-[[(4-chlorophenyl)
Amino]carbonyl]phenyl]-4-[(4-methyl-1-
piperazinyl)methyl]-2- Thiophenecarboxamide Complexed
With Human Factor Xa
pdb|1MQ6|L Chain L, Crystal Structure Of
3-Chloro-N-[4-Chloro-2-[[(5-Chloro-2-Pyridinyl)
Amino]carbonyl]-6-Methoxyphenyl]-4-[[(4,
5-Dihydro-2-Oxazolyl)
Methylamino]methyl]-2-Thiophenecarboxamide Complexed With
Human Factor Xa
pdb|2W26|B Chain B, Factor Xa In Complex With Bay59-7939
Length = 51
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In Complex
With Ecotin M84r
Length = 138
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 89 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 124
>pdb|2BQ6|A Chain A, Crystal Structure Of Factor Xa In Complex With 21
pdb|2BQ7|A Chain A, Crystal Structure Of Factor Xa In Complex With 43
pdb|2BQW|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound 45
Length = 52
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|2BMG|A Chain A, Crystal Structure Of Factor Xa In Complex With 50
Length = 53
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 979 CSHLCLRNPTNFTCAC--PTGILLSADRRSC 1007
C+ LC+ P +TC C G L+ D++SC
Sbjct: 53 CAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
>pdb|1PAF|A Chain A, The 2.5 Angstroms Structure Of Pokeweed Antiviral Protein
pdb|1PAF|B Chain B, The 2.5 Angstroms Structure Of Pokeweed Antiviral Protein
pdb|1PAG|A Chain A, The 2.5 Angstroms Structure Of Pokeweed Antiviral Protein
pdb|1PAG|B Chain B, The 2.5 Angstroms Structure Of Pokeweed Antiviral Protein
pdb|1QCG|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCG|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
pdb|1QCI|A Chain A, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCI|B Chain B, Low Temperature Structure Of Pokeweed Antiviral Protein
Complexed With Adenine
pdb|1QCJ|A Chain A, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1QCJ|B Chain B, Low Temperature Complex Of Pokeweed Antiviral Protein With
Pteoric Acid
pdb|1D6A|A Chain A, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
pdb|1D6A|B Chain B, Structure Of Pokeweed Antiviral Protein Complexed With
Guanine
Length = 262
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 271 PKIERVEMDGSNRKVI---LTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQ 327
PK VE+ GSN+K I L N + G + FE ++ + H F +D+ G+ RQ
Sbjct: 47 PKYVLVELQGSNKKTITLMLRRNNLYVMGYSDPFETNKCRY----HIF---NDISGTERQ 99
Query: 328 QVITKGLPH 336
V T P+
Sbjct: 100 DVETTLCPN 108
>pdb|2Y5F|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5G|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2Y5H|L Chain L, Factor Xa - Cation Inhibitor Complex
Length = 54
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 38
>pdb|2D1J|B Chain B, Factor Xa In Complex With The Inhibitor 2-[[4-[(5-
Chloroindol-2-Yl)sulfonyl]piperazin-1-Yl]
Carbonyl]thieno[3,2-B]pyridine N-Oxide
pdb|2P3F|L Chain L, Crystal Structure Of The Factor XaNAP5 COMPLEX
pdb|2EI6|B Chain B, Factor Xa In Complex With The Inhibitor (-)-Cis-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI7|B Chain B, Factor Xa In Complex With The Inhibitor Trans-N1-[(5-
Chloroindol-2-Yl)carbonyl]-N2-[(5-Methyl-4,5,6,7-
Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)carbonyl]-1,2-
Cyclohexanediamine
pdb|2EI8|B Chain B, Factor Xa In Complex With The Inhibitor (1s,2r,4s)-N1-[(5-
Chloroindol-2-Yl)carbonyl]-4-(N,N-Dimethylcarbamoyl)-N2-
[(5-Methyl-4,5,6,7-Tetrahydrothiazolo[5,4-C]pyridin-2-Yl)
Carbonyl]-1,2-Cyclohexanediamine
pdb|3IIT|B Chain B, Factor Xa In Complex With A Cis-1,2-Diaminocyclohexane
Derivative
pdb|3Q3K|B Chain B, Factor Xa In Complex With A Phenylenediamine Derivative
pdb|3TK5|B Chain B, Factor Xa In Complex With D102-4380
pdb|3TK6|B Chain B, Factor Xa In Complex With D46-5241
Length = 54
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|2BOK|L Chain L, Factor Xa- Cation
pdb|2JKH|L Chain L, Factor Xa - Cation Inhibitor Complex
pdb|2VVC|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVC|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVU|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VVV|L Chain L, Aminopyrrolidine-Related Triazole Factor Xa Inhibitor
pdb|2VWL|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|K Chain K, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWM|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWN|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2VWO|L Chain L, Aminopyrrolidine Factor Xa Inhibitor
pdb|2XBV|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBW|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBX|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XBY|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC0|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC4|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
pdb|2XC5|L Chain L, Factor Xa In Complex With A Pyrrolidine-3,4-Dicarboxylic
Acid Inhibitor
Length = 55
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
>pdb|2GD4|L Chain L, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
pdb|2GD4|A Chain A, Crystal Structure Of The Antithrombin-S195a Factor
Xa-Pentasaccharide Complex
Length = 58
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 5 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 40
>pdb|1HCG|B Chain B, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms
Resolution
Length = 51
Score = 30.0 bits (66), Expect = 8.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 1 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 36
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound "1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Biaryl Pyrrolidin-2-Ones Incorporating Basic Heterocyclic
Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine P4
Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa Inhibitors:
Pyrrolidin-2-Ones With Aminoindane And Phenylpyrrolidine
P4 Motifs
Length = 134
Score = 30.0 bits (66), Expect = 8.8, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,987,431
Number of Sequences: 62578
Number of extensions: 1880628
Number of successful extensions: 4934
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3790
Number of HSP's gapped (non-prelim): 399
length of query: 1332
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1222
effective length of database: 8,089,757
effective search space: 9885683054
effective search space used: 9885683054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)