Query psy5806
Match_columns 1332
No_of_seqs 579 out of 4075
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 18:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5806.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5806hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1215|consensus 100.0 1.2E-77 2.6E-82 787.0 65.3 830 250-1187 1-877 (877)
2 KOG1215|consensus 100.0 3.7E-62 8E-67 640.7 57.6 765 15-879 31-877 (877)
3 KOG1214|consensus 100.0 1.2E-46 2.7E-51 433.2 25.3 286 707-999 990-1286(1289)
4 KOG1214|consensus 100.0 8.4E-46 1.8E-50 426.3 25.9 298 1003-1319 978-1285(1289)
5 PF08450 SGL: SMP-30/Gluconola 99.7 9.7E-16 2.1E-20 172.4 29.4 214 1047-1279 2-232 (246)
6 PLN02919 haloacid dehalogenase 99.7 3.6E-15 7.8E-20 196.7 35.4 299 866-1254 562-930 (1057)
7 PLN02919 haloacid dehalogenase 99.7 1.2E-14 2.6E-19 191.7 31.6 203 1043-1258 566-835 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.5 4.6E-12 9.9E-17 142.5 25.4 199 741-948 2-217 (246)
9 COG3386 Gluconolactonase [Carb 99.4 2.4E-11 5.1E-16 138.4 22.8 198 1047-1258 27-244 (307)
10 PF10282 Lactonase: Lactonase, 99.4 4.7E-10 1E-14 132.6 31.9 205 1043-1258 85-326 (345)
11 PF10282 Lactonase: Lactonase, 99.3 6.6E-09 1.4E-13 122.8 39.9 296 796-1186 2-344 (345)
12 PRK11028 6-phosphogluconolacto 99.3 4.2E-09 9.2E-14 124.1 37.0 297 794-1187 2-327 (330)
13 PRK11028 6-phosphogluconolacto 99.3 3.6E-09 7.8E-14 124.7 32.8 199 1045-1255 80-303 (330)
14 KOG4659|consensus 99.2 1.4E-06 3E-11 108.3 52.4 369 467-943 365-794 (1899)
15 PF00058 Ldl_recept_b: Low-den 99.1 1.1E-10 2.4E-15 91.1 5.2 42 260-301 1-42 (42)
16 COG3391 Uncharacterized conser 99.1 1.4E-08 3.1E-13 121.2 25.2 201 1046-1258 32-241 (381)
17 KOG4659|consensus 99.0 5.9E-09 1.3E-13 128.6 18.8 225 1011-1254 374-689 (1899)
18 PF14670 FXa_inhibition: Coagu 99.0 7.7E-11 1.7E-15 87.3 1.6 36 972-1007 1-36 (36)
19 PF00057 Ldl_recept_a: Low-den 99.0 2.6E-10 5.7E-15 85.7 3.4 36 58-93 2-37 (37)
20 COG3391 Uncharacterized conser 99.0 6.9E-08 1.5E-12 115.4 25.4 197 1045-1258 74-285 (381)
21 PF00057 Ldl_recept_a: Low-den 99.0 2.4E-10 5.2E-15 85.9 2.7 36 14-50 2-37 (37)
22 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 3.6E-06 7.8E-11 97.0 39.0 296 752-1140 2-300 (300)
23 cd00112 LDLa Low Density Lipop 98.9 4E-10 8.6E-15 83.9 2.4 35 15-50 1-35 (35)
24 PF14670 FXa_inhibition: Coagu 98.9 2.9E-10 6.3E-15 84.3 1.6 36 666-702 1-36 (36)
25 cd00112 LDLa Low Density Lipop 98.9 4.3E-10 9.3E-15 83.7 2.4 35 59-93 1-35 (35)
26 COG2706 3-carboxymuconate cycl 98.9 1.6E-06 3.6E-11 96.4 29.6 240 1024-1278 18-343 (346)
27 PF06977 SdiA-regulated: SdiA- 98.9 2.8E-07 6E-12 101.8 23.8 201 1039-1253 15-247 (248)
28 KOG4499|consensus 98.9 1.1E-07 2.4E-12 98.8 18.2 210 1048-1273 18-255 (310)
29 PF00058 Ldl_recept_b: Low-den 98.9 4.8E-09 1E-13 81.9 6.1 42 565-606 1-42 (42)
30 TIGR03866 PQQ_ABC_repeats PQQ- 98.8 2.9E-06 6.4E-11 97.8 31.3 215 1046-1278 74-297 (300)
31 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-06 2.4E-11 101.7 25.2 221 1024-1267 29-338 (352)
32 COG3386 Gluconolactonase [Carb 98.8 5.1E-07 1.1E-11 103.2 22.0 198 743-947 29-246 (307)
33 COG2706 3-carboxymuconate cycl 98.8 9.5E-06 2.1E-10 90.4 30.9 280 794-1122 3-324 (346)
34 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.6E-05 3.5E-10 92.2 32.9 290 792-1170 11-333 (352)
35 PF12999 PRKCSH-like: Glucosid 98.7 7.7E-09 1.7E-13 105.0 4.7 78 15-98 33-120 (176)
36 PF07995 GSDH: Glucose / Sorbo 98.7 1.2E-06 2.5E-11 102.7 23.2 232 1044-1279 1-313 (331)
37 KOG1520|consensus 98.7 2.1E-07 4.5E-12 105.2 15.3 179 1057-1244 76-282 (376)
38 TIGR02604 Piru_Ver_Nterm putat 98.7 8.8E-07 1.9E-11 105.6 21.8 207 1042-1256 11-300 (367)
39 smart00192 LDLa Low-density li 98.6 1.7E-08 3.7E-13 74.3 2.8 33 14-47 1-33 (33)
40 smart00192 LDLa Low-density li 98.6 2.5E-08 5.4E-13 73.4 2.7 32 59-90 2-33 (33)
41 TIGR02604 Piru_Ver_Nterm putat 98.6 1.3E-06 2.8E-11 104.2 17.4 150 1088-1255 13-212 (367)
42 PF02239 Cytochrom_D1: Cytochr 98.5 0.001 2.2E-08 79.1 39.5 331 837-1277 6-363 (369)
43 COG4257 Vgb Streptogramin lyas 98.5 4.9E-05 1.1E-09 81.5 24.9 278 871-1207 61-344 (353)
44 PF02239 Cytochrom_D1: Cytochr 98.4 0.00013 2.9E-09 86.5 30.2 336 751-1136 6-363 (369)
45 PF07995 GSDH: Glucose / Sorbo 98.4 1.8E-05 3.9E-10 92.8 22.4 229 1012-1252 12-331 (331)
46 COG4257 Vgb Streptogramin lyas 98.4 4.3E-05 9.4E-10 81.9 22.0 278 913-1254 60-345 (353)
47 PF12999 PRKCSH-like: Glucosid 98.4 3.4E-07 7.3E-12 93.2 5.2 78 60-161 34-116 (176)
48 COG3204 Uncharacterized protei 98.4 4.3E-05 9.4E-10 83.3 21.2 196 1045-1255 86-311 (316)
49 PF06977 SdiA-regulated: SdiA- 98.3 0.00014 3E-09 80.6 25.0 193 733-932 15-240 (248)
50 PF03022 MRJP: Major royal jel 98.3 0.00011 2.4E-09 84.0 24.4 185 1046-1245 2-254 (287)
51 smart00135 LY Low-density lipo 98.2 2.3E-06 4.9E-11 67.6 5.4 42 241-283 2-43 (43)
52 TIGR03606 non_repeat_PQQ dehyd 98.2 0.00062 1.4E-08 81.6 26.7 156 1042-1200 27-249 (454)
53 KOG1520|consensus 98.1 5.1E-05 1.1E-09 86.3 16.5 136 1046-1190 116-275 (376)
54 smart00135 LY Low-density lipo 98.0 7.4E-06 1.6E-10 64.6 5.4 42 285-326 2-43 (43)
55 PRK04792 tolB translocation pr 98.0 0.0012 2.7E-08 80.9 26.6 195 1047-1256 220-425 (448)
56 PF03088 Str_synth: Strictosid 98.0 3.4E-05 7.3E-10 70.6 9.3 77 1134-1211 1-88 (89)
57 PRK05137 tolB translocation pr 97.9 0.0034 7.3E-08 77.0 28.7 201 1046-1258 203-414 (435)
58 TIGR03606 non_repeat_PQQ dehyd 97.9 0.011 2.4E-07 71.1 31.6 158 774-934 22-250 (454)
59 KOG4499|consensus 97.9 0.0006 1.3E-08 71.7 17.5 194 743-949 19-247 (310)
60 COG4946 Uncharacterized protei 97.9 0.093 2E-06 60.7 38.5 395 749-1228 105-535 (668)
61 cd00200 WD40 WD40 domain, foun 97.7 0.029 6.2E-07 62.8 30.1 201 1048-1268 55-258 (289)
62 PRK04922 tolB translocation pr 97.7 0.0062 1.3E-07 74.6 25.6 199 1047-1257 206-412 (433)
63 PRK00178 tolB translocation pr 97.7 0.0095 2.1E-07 73.0 27.3 200 1046-1257 200-407 (430)
64 TIGR02800 propeller_TolB tol-p 97.7 0.012 2.6E-07 71.7 28.1 189 1047-1247 192-386 (417)
65 PRK02889 tolB translocation pr 97.7 0.015 3.4E-07 71.0 28.2 197 1047-1255 198-402 (427)
66 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.0082 1.8E-07 66.4 22.2 213 1042-1270 20-290 (336)
67 COG3204 Uncharacterized protei 97.6 0.0048 1E-07 67.8 19.2 186 739-931 86-301 (316)
68 PRK03629 tolB translocation pr 97.6 0.03 6.6E-07 68.4 28.5 199 1046-1256 200-406 (429)
69 PRK01029 tolB translocation pr 97.5 0.055 1.2E-06 66.0 29.6 199 1048-1258 188-405 (428)
70 PRK04043 tolB translocation pr 97.5 0.04 8.7E-07 66.8 27.7 198 1047-1258 190-402 (419)
71 PF03088 Str_synth: Strictosid 97.5 0.00064 1.4E-08 62.3 9.1 71 1092-1168 1-88 (89)
72 PF12662 cEGF: Complement Clr- 97.5 8.5E-05 1.8E-09 49.6 2.4 23 411-433 1-23 (24)
73 PRK04792 tolB translocation pr 97.5 0.018 3.9E-07 70.7 24.4 179 1068-1258 199-384 (448)
74 PRK02888 nitrous-oxide reducta 97.4 0.0035 7.6E-08 76.6 17.2 189 1054-1258 139-353 (635)
75 PRK05137 tolB translocation pr 97.4 0.028 6.1E-07 68.9 24.9 179 1068-1258 183-368 (435)
76 PRK04043 tolB translocation pr 97.4 0.027 5.9E-07 68.3 24.0 186 1057-1258 156-359 (419)
77 PRK04922 tolB translocation pr 97.4 0.023 5E-07 69.6 23.8 178 1069-1258 186-370 (433)
78 PF03022 MRJP: Major royal jel 97.3 0.025 5.5E-07 64.8 22.2 144 783-933 62-255 (287)
79 PRK03629 tolB translocation pr 97.3 0.042 9.1E-07 67.2 25.6 179 1068-1258 180-365 (429)
80 COG5276 Uncharacterized conser 97.3 0.08 1.7E-06 58.1 23.3 185 1050-1257 90-286 (370)
81 PRK02889 tolB translocation pr 97.3 0.037 8E-07 67.7 24.1 179 1068-1258 177-362 (427)
82 PF07645 EGF_CA: Calcium-bindi 97.3 0.00015 3.3E-09 56.8 2.1 37 393-429 2-42 (42)
83 PRK00178 tolB translocation pr 97.2 0.048 1E-06 66.8 24.8 178 1069-1258 181-365 (430)
84 PRK01742 tolB translocation pr 97.2 0.11 2.4E-06 63.6 27.8 182 1047-1245 206-391 (429)
85 TIGR02800 propeller_TolB tol-p 97.2 0.049 1.1E-06 66.4 24.6 179 1068-1258 171-356 (417)
86 COG2133 Glucose/sorbosone dehy 97.1 0.071 1.5E-06 62.7 22.6 119 1042-1168 236-398 (399)
87 KOG2397|consensus 97.1 0.00043 9.2E-09 80.5 4.1 72 15-92 40-115 (480)
88 cd00200 WD40 WD40 domain, foun 97.0 0.29 6.2E-06 54.6 26.8 196 1046-1258 11-209 (289)
89 TIGR03032 conserved hypothetic 97.0 0.17 3.6E-06 56.9 23.2 86 1190-1285 211-318 (335)
90 KOG0318|consensus 97.0 1.3 2.9E-05 52.4 44.0 194 1044-1258 320-519 (603)
91 COG4946 Uncharacterized protei 96.9 1.3 2.8E-05 51.8 37.2 132 1102-1245 373-508 (668)
92 PRK01742 tolB translocation pr 96.9 0.09 1.9E-06 64.4 23.0 175 1068-1258 185-363 (429)
93 COG2133 Glucose/sorbosone dehy 96.9 0.037 7.9E-07 65.1 18.3 183 1044-1256 176-397 (399)
94 PF02333 Phytase: Phytase; In 96.9 0.29 6.3E-06 57.4 25.2 147 1104-1258 118-292 (381)
95 COG5276 Uncharacterized conser 96.9 0.46 1E-05 52.4 24.3 218 1012-1253 96-326 (370)
96 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.45 9.9E-06 53.1 24.5 173 987-1174 79-287 (336)
97 KOG2397|consensus 96.5 0.002 4.3E-08 75.1 3.7 72 62-156 43-115 (480)
98 PF12662 cEGF: Complement Clr- 96.5 0.0019 4.2E-08 43.3 2.1 21 684-704 1-21 (24)
99 PRK01029 tolB translocation pr 96.4 0.37 8E-06 58.8 23.0 187 1024-1218 213-411 (428)
100 PRK02888 nitrous-oxide reducta 96.4 0.083 1.8E-06 65.0 16.5 150 1089-1257 235-405 (635)
101 PTZ00421 coronin; Provisional 96.3 2.2 4.7E-05 52.9 29.1 233 1046-1293 77-324 (493)
102 PF07645 EGF_CA: Calcium-bindi 96.2 0.0024 5.2E-08 50.0 1.7 39 969-1007 2-42 (42)
103 KOG1446|consensus 96.2 2.9 6.3E-05 46.8 26.3 193 1057-1269 70-272 (311)
104 PF13360 PQQ_2: PQQ-like domai 96.0 1.7 3.8E-05 48.0 24.4 174 1055-1258 35-232 (238)
105 PF06433 Me-amine-dh_H: Methyl 96.0 1.8 3.9E-05 49.8 24.0 198 1012-1219 106-330 (342)
106 PF01436 NHL: NHL repeat; Int 96.0 0.014 3.1E-07 41.2 4.5 27 1089-1116 2-28 (28)
107 PF01436 NHL: NHL repeat; Int 95.9 0.016 3.5E-07 40.9 4.7 28 1179-1207 1-28 (28)
108 PTZ00420 coronin; Provisional 95.6 9.7 0.00021 47.9 30.3 233 1046-1293 76-327 (568)
109 cd01475 vWA_Matrilin VWA_Matri 95.6 0.0092 2E-07 66.0 3.4 40 389-428 183-224 (224)
110 smart00179 EGF_CA Calcium-bind 95.6 0.014 3E-07 44.6 3.5 35 393-430 2-39 (39)
111 PF05096 Glu_cyclase_2: Glutam 95.3 3 6.6E-05 46.5 21.8 153 1091-1267 47-211 (264)
112 KOG3509|consensus 95.2 0.013 2.9E-07 74.9 3.4 101 27-154 2-107 (964)
113 PF02333 Phytase: Phytase; In 94.9 1.9 4.2E-05 50.7 19.9 121 1086-1213 153-293 (381)
114 PF06433 Me-amine-dh_H: Methyl 94.7 10 0.00022 43.9 24.2 198 1051-1268 101-329 (342)
115 smart00181 EGF Epidermal growt 94.5 0.04 8.6E-07 41.1 3.1 28 396-423 2-31 (35)
116 KOG0315|consensus 94.4 7.4 0.00016 42.3 20.6 196 1047-1257 43-246 (311)
117 PF05096 Glu_cyclase_2: Glutam 94.3 11 0.00024 42.1 27.2 189 1047-1255 47-260 (264)
118 TIGR03032 conserved hypothetic 94.0 14 0.00031 42.1 27.3 49 1056-1108 212-260 (335)
119 KOG3509|consensus 93.9 0.044 9.6E-07 70.3 3.7 82 11-93 28-110 (964)
120 PF13449 Phytase-like: Esteras 93.7 3.7 8E-05 48.2 19.3 165 1044-1211 19-252 (326)
121 PF13449 Phytase-like: Esteras 93.5 2.6 5.7E-05 49.5 17.6 118 1132-1257 86-252 (326)
122 PF12947 EGF_3: EGF domain; I 93.3 0.031 6.8E-07 42.0 0.6 34 972-1007 1-36 (36)
123 cd01475 vWA_Matrilin VWA_Matri 93.1 0.046 1E-06 60.4 2.0 38 969-1006 187-224 (224)
124 KOG1219|consensus 93.1 4.9 0.00011 55.5 19.7 31 389-419 3642-3676(4289)
125 KOG0291|consensus 93.0 32 0.00069 43.2 45.6 196 1047-1259 310-511 (893)
126 PF01731 Arylesterase: Arylest 92.8 0.26 5.6E-06 45.1 6.0 42 1167-1209 42-83 (86)
127 PRK11138 outer membrane biogen 92.6 15 0.00032 44.4 22.8 95 1142-1258 256-355 (394)
128 KOG1446|consensus 92.6 22 0.00047 40.2 25.0 154 1045-1210 15-170 (311)
129 PF13360 PQQ_2: PQQ-like domai 92.5 10 0.00023 41.7 19.9 135 1100-1258 36-193 (238)
130 PLN00181 protein SPA1-RELATED; 92.3 26 0.00055 46.7 26.5 195 1047-1256 486-690 (793)
131 KOG0279|consensus 92.1 23 0.00049 39.4 22.2 203 1047-1268 66-271 (315)
132 COG0823 TolB Periplasmic compo 91.8 10 0.00022 46.1 19.7 177 1068-1258 219-403 (425)
133 smart00181 EGF Epidermal growt 91.6 0.12 2.7E-06 38.4 2.1 29 972-1001 2-31 (35)
134 KOG0266|consensus 91.3 38 0.00082 41.8 24.5 196 1047-1258 162-366 (456)
135 smart00179 EGF_CA Calcium-bind 91.2 0.17 3.6E-06 38.5 2.5 34 970-1007 3-38 (39)
136 PRK13616 lipoprotein LpqB; Pro 91.2 25 0.00054 44.7 23.0 186 1045-1254 350-565 (591)
137 KOG0273|consensus 91.2 39 0.00084 40.2 22.6 202 1012-1228 247-460 (524)
138 PF12947 EGF_3: EGF domain; I 91.1 0.12 2.7E-06 38.8 1.5 30 398-429 5-36 (36)
139 cd00053 EGF Epidermal growth f 91.1 0.23 5.1E-06 36.7 3.1 26 398-423 5-32 (36)
140 PF09064 Tme5_EGF_like: Thromb 91.0 0.2 4.3E-06 36.4 2.3 29 396-425 3-31 (34)
141 PF14583 Pectate_lyase22: Olig 90.9 17 0.00038 42.8 19.4 157 1057-1218 49-232 (386)
142 PF07433 DUF1513: Protein of u 90.8 36 0.00077 39.1 24.5 197 1051-1257 57-286 (305)
143 KOG0266|consensus 90.5 53 0.0011 40.6 26.6 196 1045-1258 204-411 (456)
144 PF02897 Peptidase_S9_N: Proly 90.2 49 0.0011 40.1 24.2 192 1049-1256 128-357 (414)
145 KOG0286|consensus 90.0 37 0.0008 38.0 27.1 155 1065-1228 164-330 (343)
146 PF05787 DUF839: Bacterial pro 89.9 16 0.00034 45.7 19.2 138 1053-1199 255-454 (524)
147 PRK11138 outer membrane biogen 89.8 24 0.00053 42.5 20.8 59 1191-1258 256-314 (394)
148 cd00054 EGF_CA Calcium-binding 89.7 0.39 8.4E-06 36.1 3.3 30 393-422 2-34 (38)
149 TIGR03300 assembly_YfgL outer 89.7 39 0.00085 40.4 22.4 59 1191-1258 241-299 (377)
150 KOG0315|consensus 89.5 36 0.00079 37.2 24.0 226 1013-1258 53-290 (311)
151 PF08662 eIF2A: Eukaryotic tra 89.4 26 0.00056 37.7 18.3 124 1067-1199 39-163 (194)
152 PF01731 Arylesterase: Arylest 88.7 1.2 2.7E-05 40.8 6.3 36 1084-1119 49-84 (86)
153 KOG0294|consensus 88.6 48 0.001 37.5 23.3 149 1046-1211 45-198 (362)
154 PF00930 DPPIV_N: Dipeptidyl p 88.6 27 0.00058 41.5 19.6 148 1045-1195 184-343 (353)
155 TIGR02276 beta_rpt_yvtn 40-res 88.3 1.6 3.5E-05 33.7 6.1 40 1189-1228 1-41 (42)
156 PLN00181 protein SPA1-RELATED; 87.7 1.1E+02 0.0024 40.7 30.8 197 1046-1258 534-740 (793)
157 COG0823 TolB Periplasmic compo 87.6 10 0.00022 46.2 15.1 158 1089-1258 147-316 (425)
158 KOG4378|consensus 87.1 23 0.00049 42.2 16.4 158 1046-1213 123-283 (673)
159 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.6 25 0.00054 44.2 18.3 96 1135-1252 238-339 (527)
160 KOG0319|consensus 86.2 47 0.001 41.7 19.2 231 1012-1258 31-270 (775)
161 PF00008 EGF: EGF-like domain 86.2 0.38 8.2E-06 35.2 1.2 25 394-421 4-29 (32)
162 KOG0310|consensus 86.0 76 0.0016 38.0 20.0 184 1048-1251 114-304 (487)
163 PF05787 DUF839: Bacterial pro 85.2 5.8 0.00012 49.5 11.6 65 1087-1152 348-456 (524)
164 TIGR02276 beta_rpt_yvtn 40-res 84.9 3.1 6.7E-05 32.0 6.0 40 1099-1139 2-42 (42)
165 KOG0291|consensus 84.5 1.3E+02 0.0027 38.3 43.9 207 1046-1274 267-480 (893)
166 COG4247 Phy 3-phytase (myo-ino 84.2 71 0.0015 35.1 21.5 143 1106-1257 119-289 (364)
167 PF02191 OLF: Olfactomedin-lik 83.6 37 0.0008 38.1 16.0 149 1056-1209 78-246 (250)
168 KOG2139|consensus 83.5 94 0.002 36.0 21.6 197 1047-1256 198-431 (445)
169 KOG0293|consensus 83.5 1E+02 0.0022 36.3 19.1 205 1046-1268 271-479 (519)
170 smart00284 OLF Olfactomedin-li 83.5 38 0.00083 37.9 15.7 147 1057-1209 84-251 (255)
171 cd00053 EGF Epidermal growth f 83.3 0.81 1.8E-05 33.6 2.0 25 977-1001 6-32 (36)
172 KOG0289|consensus 83.1 1.1E+02 0.0023 36.3 23.2 190 1047-1253 306-502 (506)
173 PTZ00420 coronin; Provisional 82.3 1.5E+02 0.0033 37.5 23.2 159 1046-1212 127-295 (568)
174 KOG4649|consensus 82.1 37 0.00079 37.4 14.2 134 1091-1258 33-167 (354)
175 PF07433 DUF1513: Protein of u 82.1 1E+02 0.0022 35.4 22.5 204 1048-1258 8-249 (305)
176 KOG4289|consensus 82.0 26 0.00057 46.7 15.2 35 393-431 1501-1537(2531)
177 KOG0293|consensus 82.0 77 0.0017 37.2 17.5 152 1090-1256 271-425 (519)
178 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.7 1.5E+02 0.0032 37.4 22.2 69 1184-1258 238-335 (527)
179 KOG1407|consensus 81.6 92 0.002 34.5 21.2 227 1047-1296 67-296 (313)
180 PF00930 DPPIV_N: Dipeptidyl p 81.2 12 0.00025 44.6 11.8 82 553-634 235-323 (353)
181 KOG0277|consensus 80.6 68 0.0015 35.4 15.5 155 1046-1210 62-221 (311)
182 PF09064 Tme5_EGF_like: Thromb 80.5 1.4 3.1E-05 32.1 2.2 27 671-699 6-32 (34)
183 KOG0285|consensus 80.4 1.1E+02 0.0024 35.3 17.7 174 1044-1228 151-327 (460)
184 PTZ00421 coronin; Provisional 80.1 1.7E+02 0.0036 36.6 30.9 199 1046-1258 127-332 (493)
185 KOG2055|consensus 78.9 1.5E+02 0.0033 35.4 19.9 102 1013-1119 316-417 (514)
186 cd00216 PQQ_DH Dehydrogenases 78.6 1.8E+02 0.004 36.2 24.4 22 1236-1258 405-426 (488)
187 PF02897 Peptidase_S9_N: Proly 78.4 1.6E+02 0.0036 35.5 25.8 199 1049-1258 174-406 (414)
188 PF14339 DUF4394: Domain of un 78.3 1.1E+02 0.0025 33.7 18.7 68 1045-1113 27-98 (236)
189 TIGR03300 assembly_YfgL outer 77.1 1.7E+02 0.0036 34.9 33.1 177 1056-1258 145-340 (377)
190 KOG1274|consensus 76.9 77 0.0017 40.9 16.8 150 1047-1210 16-168 (933)
191 PF05694 SBP56: 56kDa selenium 76.9 7.4 0.00016 46.2 7.8 62 1047-1108 314-393 (461)
192 KOG4328|consensus 76.5 24 0.00052 41.7 11.6 154 1047-1209 237-398 (498)
193 PF05694 SBP56: 56kDa selenium 76.3 46 0.001 39.8 14.0 62 1132-1199 313-393 (461)
194 KOG2139|consensus 74.9 1.7E+02 0.0037 34.0 20.8 188 1044-1248 140-368 (445)
195 KOG4441|consensus 73.4 99 0.0021 39.3 17.3 179 1055-1244 331-529 (571)
196 COG3823 Glutamine cyclotransfe 72.6 1.1E+02 0.0024 32.9 14.2 153 1091-1267 48-212 (262)
197 KOG2110|consensus 72.2 1.9E+02 0.0042 33.6 17.0 146 1053-1210 94-248 (391)
198 PF14583 Pectate_lyase22: Olig 71.9 94 0.002 36.9 15.2 149 1100-1255 47-233 (386)
199 COG3823 Glutamine cyclotransfe 71.7 33 0.00071 36.7 10.1 67 1096-1168 181-260 (262)
200 KOG0281|consensus 71.6 47 0.001 37.8 11.9 148 1045-1211 238-389 (499)
201 KOG0279|consensus 70.0 1.9E+02 0.0042 32.5 23.7 173 1047-1228 18-200 (315)
202 PRK13616 lipoprotein LpqB; Pro 69.8 87 0.0019 39.9 15.6 102 1090-1201 449-560 (591)
203 KOG0281|consensus 69.7 47 0.001 37.9 11.4 188 1044-1258 197-390 (499)
204 COG4247 Phy 3-phytase (myo-ino 68.7 1.9E+02 0.0042 32.0 17.5 112 1084-1205 148-273 (364)
205 cd00054 EGF_CA Calcium-binding 68.3 4.4 9.5E-05 30.1 2.4 30 970-1000 3-34 (38)
206 KOG0263|consensus 67.6 1.8E+02 0.0039 37.0 16.9 184 1013-1210 464-649 (707)
207 cd00216 PQQ_DH Dehydrogenases 67.3 2.8E+02 0.0061 34.5 19.4 49 1190-1247 405-458 (488)
208 KOG0272|consensus 65.4 1.8E+02 0.004 34.4 15.2 173 1045-1228 262-438 (459)
209 KOG3914|consensus 65.1 81 0.0017 36.9 12.4 153 1091-1258 65-225 (390)
210 KOG1219|consensus 64.4 3.3E+02 0.0072 39.5 19.0 35 1286-1328 3906-3940(4289)
211 KOG1274|consensus 63.7 4.5E+02 0.0097 34.4 26.4 114 1024-1141 120-243 (933)
212 PF00008 EGF: EGF-like domain 63.4 2.6 5.6E-05 30.8 0.2 18 982-999 11-29 (32)
213 PF10647 Gmad1: Lipoprotein Lp 62.6 2.6E+02 0.0057 31.4 20.9 190 1046-1252 25-233 (253)
214 KOG0641|consensus 61.5 2.4E+02 0.0051 30.5 19.8 111 1094-1212 187-305 (350)
215 KOG0303|consensus 61.4 1.5E+02 0.0032 34.9 13.4 157 1047-1213 134-297 (472)
216 PHA02713 hypothetical protein; 61.0 3.8E+02 0.0083 34.0 19.1 149 1098-1258 349-535 (557)
217 KOG0270|consensus 59.6 3.8E+02 0.0081 32.1 17.9 60 1091-1150 246-306 (463)
218 KOG0278|consensus 59.3 2.8E+02 0.0062 30.6 14.4 187 1047-1258 103-299 (334)
219 KOG0285|consensus 59.1 3.4E+02 0.0074 31.6 23.3 118 776-902 146-264 (460)
220 KOG0308|consensus 57.3 1.7E+02 0.0037 36.5 13.7 112 1089-1210 214-327 (735)
221 TIGR03074 PQQ_membr_DH membran 57.1 4.6E+02 0.01 34.6 19.0 100 1134-1253 378-484 (764)
222 KOG0646|consensus 56.6 4.3E+02 0.0093 31.9 19.5 194 1047-1258 84-309 (476)
223 PF12661 hEGF: Human growth fa 56.1 7.9 0.00017 22.2 1.3 9 413-421 1-9 (13)
224 KOG0268|consensus 55.6 1.5E+02 0.0033 34.4 12.2 188 1047-1258 112-304 (433)
225 KOG4441|consensus 52.6 2.2E+02 0.0049 36.2 14.9 155 1092-1258 326-501 (571)
226 KOG0308|consensus 51.8 5.4E+02 0.012 32.4 16.7 166 1047-1223 120-299 (735)
227 KOG4328|consensus 50.3 1.5E+02 0.0033 35.4 11.5 117 741-862 237-358 (498)
228 KOG4260|consensus 50.0 7.3 0.00016 42.5 1.0 37 389-425 232-272 (350)
229 KOG0263|consensus 49.9 6.8E+02 0.015 32.2 18.7 193 1046-1257 453-650 (707)
230 PRK10115 protease 2; Provision 49.9 7.2E+02 0.016 32.5 29.4 221 1024-1258 155-396 (686)
231 KOG0270|consensus 49.8 5.3E+02 0.012 30.9 17.8 152 1049-1217 248-411 (463)
232 KOG0299|consensus 49.1 5.5E+02 0.012 30.9 17.4 195 1045-1258 143-358 (479)
233 KOG0268|consensus 48.9 2.6E+02 0.0056 32.6 12.7 132 1087-1228 186-323 (433)
234 KOG0310|consensus 48.7 5.7E+02 0.012 31.0 21.9 151 1047-1211 71-226 (487)
235 KOG2110|consensus 47.8 5.3E+02 0.011 30.3 15.6 100 1047-1148 132-236 (391)
236 KOG4649|consensus 45.7 4.8E+02 0.01 29.2 27.8 59 551-623 29-88 (354)
237 KOG0273|consensus 45.2 6.4E+02 0.014 30.6 17.9 62 781-843 316-377 (524)
238 KOG0284|consensus 43.1 1.6E+02 0.0035 34.7 10.2 100 1047-1149 141-241 (464)
239 KOG1407|consensus 42.1 5.4E+02 0.012 28.8 17.1 153 1046-1210 22-177 (313)
240 KOG4378|consensus 40.6 7.6E+02 0.017 30.1 24.4 132 1132-1277 166-299 (673)
241 PF14870 PSII_BNR: Photosynthe 38.7 6.8E+02 0.015 29.0 21.7 186 1046-1254 18-213 (302)
242 KOG3658|consensus 38.4 55 0.0012 40.8 5.9 127 13-148 510-650 (764)
243 KOG3514|consensus 38.4 9.1E+02 0.02 32.4 16.3 280 755-1118 455-753 (1591)
244 PF05935 Arylsulfotrans: Aryls 38.2 8.6E+02 0.019 30.2 16.7 144 1099-1258 112-303 (477)
245 COG1520 FOG: WD40-like repeat 37.9 7.6E+02 0.016 29.3 19.3 65 1055-1123 67-134 (370)
246 smart00284 OLF Olfactomedin-li 37.7 6.4E+02 0.014 28.4 14.6 142 478-622 83-249 (255)
247 PF00954 S_locus_glycop: S-loc 37.5 1.9E+02 0.0042 27.7 8.7 27 1288-1322 83-109 (110)
248 COG3211 PhoX Predicted phospha 36.7 1.9E+02 0.0041 35.8 9.9 114 1086-1201 414-575 (616)
249 PHA02713 hypothetical protein; 35.3 1E+03 0.022 30.1 19.1 148 1099-1257 302-489 (557)
250 PF15416 DUF4623: Domain of un 34.4 3.1E+02 0.0066 31.7 10.3 118 1092-1213 137-274 (442)
251 KOG0289|consensus 33.7 9.1E+02 0.02 29.0 22.3 156 1088-1258 303-464 (506)
252 TIGR02171 Fb_sc_TIGR02171 Fibr 32.7 2.2E+02 0.0047 37.6 10.2 101 1100-1203 319-424 (912)
253 KOG0918|consensus 32.6 1.7E+02 0.0036 34.6 8.2 123 1092-1228 315-459 (476)
254 PF05935 Arylsulfotrans: Aryls 32.6 9.3E+02 0.02 29.9 15.7 117 1100-1218 158-309 (477)
255 KOG2048|consensus 32.3 1.2E+03 0.025 29.8 43.0 158 1046-1212 430-603 (691)
256 KOG0640|consensus 32.3 8E+02 0.017 28.1 13.0 111 1003-1118 173-290 (430)
257 PRK10115 protease 2; Provision 31.7 1.3E+03 0.028 30.2 25.8 192 1048-1256 130-346 (686)
258 KOG0649|consensus 31.3 7.6E+02 0.017 27.4 21.4 176 1048-1256 118-304 (325)
259 KOG0272|consensus 31.1 9.9E+02 0.021 28.6 20.2 96 1048-1145 179-276 (459)
260 COG1520 FOG: WD40-like repeat 30.6 9.7E+02 0.021 28.4 20.2 143 1099-1258 67-219 (370)
261 PF06739 SBBP: Beta-propeller 30.4 41 0.00089 25.7 2.1 21 1131-1152 13-33 (38)
262 KOG0650|consensus 29.5 1.5E+02 0.0032 36.7 7.4 96 1108-1212 543-639 (733)
263 PF04885 Stig1: Stigma-specifi 29.1 91 0.002 31.4 4.8 64 15-95 53-117 (136)
264 KOG0292|consensus 29.0 1.5E+03 0.032 30.0 49.6 141 744-910 212-355 (1202)
265 PF02191 OLF: Olfactomedin-lik 28.9 8.7E+02 0.019 27.3 21.4 178 1054-1247 28-240 (250)
266 PF09910 DUF2139: Uncharacteri 28.1 9.7E+02 0.021 27.6 15.1 98 1137-1258 41-141 (339)
267 PHA02790 Kelch-like protein; P 27.3 1.3E+03 0.027 28.7 20.9 143 1099-1258 317-472 (480)
268 KOG3881|consensus 26.6 4.3E+02 0.0093 31.2 10.1 116 1101-1228 216-339 (412)
269 KOG0290|consensus 25.4 1.1E+03 0.023 27.1 12.8 43 1087-1129 195-238 (364)
270 COG3211 PhoX Predicted phospha 25.3 2E+02 0.0043 35.7 7.5 70 822-893 414-519 (616)
271 PHA03098 kelch-like protein; P 25.1 1.4E+03 0.031 28.5 20.6 151 1098-1258 340-513 (534)
272 KOG3545|consensus 24.9 4.2E+02 0.0091 29.5 9.3 145 1056-1208 77-244 (249)
273 KOG1517|consensus 24.6 1.3E+03 0.027 31.3 14.5 131 1091-1228 1166-1312(1387)
274 KOG2096|consensus 24.5 1.1E+03 0.025 27.1 14.3 143 1089-1243 87-246 (420)
275 PHA03099 epidermal growth fact 23.8 58 0.0013 31.8 2.3 33 393-431 50-82 (139)
276 KOG0282|consensus 23.7 1.1E+03 0.025 28.6 13.0 102 1047-1151 302-405 (503)
277 KOG0640|consensus 23.6 1.2E+03 0.025 26.9 15.7 217 1045-1282 173-406 (430)
278 KOG0973|consensus 23.4 5.9E+02 0.013 33.9 11.6 116 1047-1168 132-254 (942)
279 KOG0650|consensus 23.4 2.6E+02 0.0055 34.7 7.9 93 1045-1141 567-661 (733)
280 KOG0301|consensus 22.4 1.2E+03 0.027 29.7 13.4 140 1095-1253 145-285 (745)
281 KOG0772|consensus 21.4 1.6E+03 0.035 27.7 15.4 201 1044-1258 167-396 (641)
282 KOG1445|consensus 21.1 1.7E+03 0.038 28.1 16.5 196 1044-1256 627-844 (1012)
283 KOG0276|consensus 20.8 1.8E+03 0.039 28.1 20.7 99 1050-1151 61-161 (794)
284 KOG2321|consensus 20.3 1.8E+03 0.038 27.8 17.6 156 1049-1218 56-213 (703)
No 1
>KOG1215|consensus
Probab=100.00 E-value=1.2e-77 Score=786.96 Aligned_cols=830 Identities=36% Similarity=0.621 Sum_probs=701.6
Q ss_pred CceEEEcCCCCeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeeecCCCeEEEEeCCCCeEEEEeCCCCcEEEE
Q psy5806 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQV 329 (1332)
Q Consensus 250 pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~~~~rlYw~D~~~~~i~~~~~dG~~~~~v 329 (1332)
||+||++|..++|||||||. . || ||+.++.++.+.+.||||++||+..+++||+|++.+.|++.++||+.|+
T Consensus 1 pra~~~~p~~~~l~wtd~~~-~-i~----dg~~~~~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~-- 72 (877)
T KOG1215|consen 1 PRAIALLPLEGLLFWTDWGA-N-IE----DGGERKILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR-- 72 (877)
T ss_pred CceEEeccccceEEEecCCc-c-cc----cCcceEEeeccceeCCCcceecchhheeeeccccCCceEEeccCCccce--
Confidence 89999999999999999998 4 88 8899999999999999999999999999999999999999999999887
Q ss_pred EcCCCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCceeEEEecCCCCccccccCCC---Ccceeeec
Q psy5806 330 ITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAP---KVCSHICL 406 (1332)
Q Consensus 330 ~~~~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i~~~h~~~qp~~~n~C~~---g~CshlCl 406 (1332)
+|++|++++||+| +.|.+++|.+|+....+....+.|+.++++|+.+||...++|.. .+|+|.|+
T Consensus 73 ---------~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (877)
T KOG1215|consen 73 ---------ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCL 140 (877)
T ss_pred ---------eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCcccccCCCCCccccC
Confidence 8999999999999 78899999999999888777777999999999999999999983 58999999
Q ss_pred cCCC--ceEEeCCCCceecCCCCCcCCCccceeEeeecccccccccCCCCCceeeEEeeeeccceEEEEEEccCCeEEEE
Q psy5806 407 PNKH--RFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWA 484 (1332)
Q Consensus 407 ~~~~--~~~C~C~~G~~L~~d~~tC~~~~~~~ll~~~~~~i~~~~l~~~~~~~~~~~p~~~~~~~~~i~~d~~~~~lyws 484 (1332)
.... .++|+|+.+..+-.+...|..+.+..+.......+++..+.. ....++.......++++|..++.+||+
T Consensus 141 ~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~d~~~~~~~~~ 215 (877)
T KOG1215|consen 141 DKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDC-----IVAIKVCDIQHDCADDYDESEGRIYWT 215 (877)
T ss_pred CCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCcccccccc-----ceeeeecCcccccccccccccCccccc
Confidence 8876 459999999999877789988765544443333344333322 124444556667777777777777777
Q ss_pred cCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEEEeCCCCCcEEEEeCCCCCceEEEEecCC
Q psy5806 485 DVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIG 564 (1332)
Q Consensus 485 D~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v~~l~g~~~~~l~~~~~~~P~~iavdp~~ 564 (1332)
+.. +|++...+|+.+.+.++...+.|+++++.|..
T Consensus 216 ~~~---------------------------------------------~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de 250 (877)
T KOG1215|consen 216 DDS---------------------------------------------RIEVTRCDGSSRCILISEVCDGPRDCVDGPDE 250 (877)
T ss_pred CCc---------------------------------------------ceeEEEecCCCcEEeehhccCCCcccccCCcC
Confidence 643 78999999988888888899999999999999
Q ss_pred CeEEEEecCC-CCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEe--ecc--
Q psy5806 565 GIMYWCSWGD-LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIA--LHH-- 639 (1332)
Q Consensus 565 G~lywtd~g~-~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~--~~~-- 639 (1332)
|++||++++. .+.++.+.+++..+..+....+.+|+|++.|+..+.+|| ..++|+..++ |.. +.|
T Consensus 251 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~~~~~~~~ 320 (877)
T KOG1215|consen 251 GVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILLSKLCHGY 320 (877)
T ss_pred ceeEeeccccCCcceeecCCCCccceEEecCccCCCCcccccccccceee---------eeecccCCce-eeecccCccc
Confidence 9999999874 478999999999999999888999999999999999999 7788888876 543 332
Q ss_pred --------eEE------------EeeecCceeEEEEeCCCCcCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCC
Q psy5806 640 --------LKV------------MTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699 (1332)
Q Consensus 640 --------l~v------------~~~~~~~~~i~v~~~~~q~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~ 699 (1332)
+.. .......++..+++....+..++|...||+|+|+|++.....+.|.|+.||.+..++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 321 WTDGLNECAERVLKCSHKCPDVSVGPRCDCMGAKVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred cccccccchhhcccccCCCCccccCCcccCCccceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCC
Confidence 000 112233456666666555567999999999999999653339999999999999988
Q ss_pred CccccCCccceEeeccceeEEEecCCCCCcceeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeC
Q psy5806 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN 779 (1332)
Q Consensus 700 ~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~ 779 (1332)
..+...+..||+++.+.+|++++++.. ++..|+.++.++.++++|..++++||+|.....|.+...++.....+...
T Consensus 401 c~~~~~~~~~l~~s~~~~ir~~~~~~~---~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~ 477 (877)
T KOG1215|consen 401 CEASDQPEAFLLFSNRHDIRRISLDCS---DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGD 477 (877)
T ss_pred ceecCCCCcEEEEecCccceecccCCC---cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEecc
Confidence 333344789999999999999999875 67788888899999999999999999999999999999999888888888
Q ss_pred CCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec
Q psy5806 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859 (1332)
Q Consensus 780 ~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~ 859 (1332)
++..++|||+||+++++||+|.....|++.+++|+.+.+++...+..|+.++++|..|++||++|+.. ++|+|+.|
T Consensus 478 g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~----~~i~ra~~ 553 (877)
T KOG1215|consen 478 GLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQP----PRIERASL 553 (877)
T ss_pred CccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCC----chhhhhcC
Confidence 99999999999999999999999999999999999999999988899999999999999999999987 79999999
Q ss_pred CCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCC-eEEEEccCCCcee-EEeccCCcceEEEEeCCEEEEEeCCCCE
Q psy5806 860 DGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKH-TIEYKTLATGRAK-RAYAVQSHPYTLTVLDYYVYWTDVQHSK 936 (1332)
Q Consensus 860 dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~-~I~~~~~dG~~~~-~l~~~~~~P~~la~~~~~iywtD~~~~~ 936 (1332)
||+.+..++.. +.||+||++|... +++||+|+... .|++++++|..++ +....+.||++++++++++||+||....
T Consensus 554 dg~~~~~l~~~~~~~p~glt~d~~~-~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~ 632 (877)
T KOG1215|consen 554 DGSERAVLVTNGILWPNGLTIDYET-DRLYWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRA 632 (877)
T ss_pred CCCCceEEEeCCccCCCcceEEeec-ceeEEEcccCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccc
Confidence 99999999988 9999999999999 99999999998 8999999999998 3334899999999999999999999999
Q ss_pred EEEEECCCC-e--EEEeeee--cCcceEE-e-ccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 937 IYRANKYDV-K--DIVEFAQ--VDRPWLV-R-AAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 937 i~~~~~~~g-~--~i~~~~~--~~i~~~~-~-~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+.+..+..+ . .++.+.. +.+. ++ + ..++.+ .|+|+.+||+|+|||++.|...+|+||+|+.|..++++|..
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~~~C~~ 710 (877)
T KOG1215|consen 633 ISRAEKHKGSDSRTSRSNLAQPLDII-LVHHSSSRPTG-VNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDGKSCSS 710 (877)
T ss_pred eEeeecccCCcceeeecccCcccceE-EEeccccCCCC-CCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCCCeecC
Confidence 999998888 3 3333333 4444 34 2 334555 99999999999999999999889999999999999999997
Q ss_pred cCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1010 RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1010 ~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
+..+++++.+.. |+.++.+.........+.. +...+..+|+....+...+...+ ......++.....
T Consensus 711 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 777 (877)
T KOG1215|consen 711 -PEGYLLITSRTG-IPCISLDSELSPDQPLEDG----------DTIDRLEYWTDVRVGVAAVSSQN-CAPGYDLVGEGEP 777 (877)
T ss_pred -cccccccccccc-cceeecCcccCCCcccCCC----------cccccceecccccceeeEEEecC-CCCccccccccCC
Confidence 788999999999 9999988665554333322 67778899998777666655544 3333335556677
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeCCce-------EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEE
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-------KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIE 1162 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-------~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~ 1162 (1332)
.+.++|+++..+.|||+....+.|.+..+++.. ..+.......|+.+.+.|..+.++|+++.. .+.|.
T Consensus 778 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 852 (877)
T KOG1215|consen 778 PPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEP-----GPKIP 852 (877)
T ss_pred CCCCceeehhhcceEEEeecccEEEEEEEeeecccccccccccccCCCCCCcceeeccccceeccCCccc-----cceee
Confidence 899999999999999999999999999988742 111334567899999999999999999833 58999
Q ss_pred EEecCCCceEEEEecCCCCcceEEE
Q psy5806 1163 KVYLDGSYRTVLVEEDLAFPNELAI 1187 (1332)
Q Consensus 1163 r~~ldG~~~~~l~~~~l~~p~glai 1187 (1332)
+..+++.+...++...+..|+++++
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (877)
T KOG1215|consen 853 RSALDGSERLVLFKSLLSCPNALAL 877 (877)
T ss_pred ecccccccccceeccCCCCccCCCC
Confidence 9999999999999888899998863
No 2
>KOG1215|consensus
Probab=100.00 E-value=3.7e-62 Score=640.73 Aligned_cols=765 Identities=30% Similarity=0.538 Sum_probs=614.8
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCEEecCCC--
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP----------------------PKKCSPDEHRCTTGH-- 70 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~----------------------~~~C~~~~f~C~~g~-- 70 (1332)
+.+.+|.|. +|.+|...|.|+...|+....+|..+..... ........+...+..
T Consensus 31 ~~~~~~~~~-ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~~~~ 109 (877)
T KOG1215|consen 31 LEKEEFEWP-NGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDSHFP 109 (877)
T ss_pred eeccceeCC-CcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehhcCCCC
Confidence 567799999 8899999999999999999999987743221 011122233333332
Q ss_pred EEEeeeecCCCCCCCCCCCcc-c--ccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCC
Q psy5806 71 CILKTWLCDGIPDCSLGEDER-N--CNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKH 147 (1332)
Q Consensus 71 Ci~~~~~CDg~~DC~DgsDE~-~--C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~d 147 (1332)
+....+++.+.+.+.+++++. + |.. |... +|.|... ...|++..|.||+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~c~~~-----------------------~~~Cip~~~~cd~~~~ 164 (877)
T KOG1215|consen 110 LDIHAYHPSSQPLAPDPCAESGNGPCSH-CCLD-KFSCRTG-----------------------SCKCIPGDWLCDGEAD 164 (877)
T ss_pred cceeEEecCCCCCCCCcccccCCCCCcc-ccCC-CCCCcCc-----------------------cccCCCCceeCCCCCc
Confidence 445999999999999999995 3 333 4444 6877631 1359999999999999
Q ss_pred CCCCCCCCCCcCCc-CcccccCcce----eEEeecccceeEEeeeccceeEEEEEEEEEecccccCceeeecccCceeee
Q psy5806 148 CPRGEEGPDERHCP-KRVSLSNKKY----TAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWT 222 (1332)
Q Consensus 148 C~dg~de~d~~~C~-~~~~~~~~~~----~~~~~~~~~~~a~d~~~~~~~iywsd~v~~~g~~~~~~lavDWi~~~lYw~ 222 (1332)
|.+|+|| ..|. +...+....+ ...+-+..+..++++ |=....+||+
T Consensus 165 C~dg~de---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------------------d~~~~~~~~~ 215 (877)
T KOG1215|consen 165 CPDGSDE---LNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDY--------------------------DESEGRIYWT 215 (877)
T ss_pred cccchhh---hcccccccCccccccccceeeeecCccccccccc--------------------------ccccCccccc
Confidence 9999999 3342 1121111111 111122233334444 4445556665
Q ss_pred cCCCCeEEEEcCCCCceEEEEeCCCCCCceEEEcCCCCeEEEEecCC-CCceeEecCCCCCcEEEecCCccCceeeeeec
Q psy5806 223 DTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301 (1332)
Q Consensus 223 d~~~~~I~v~~~dg~~~~~l~~~~~~~pr~iavdp~~g~~fwtd~g~-~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~ 301 (1332)
+.. +|++...+|+.+++.....++.|+.++..|.+|++||++|+. .+.|+.+.++++.+..+.+..+.||+|+++|+
T Consensus 216 ~~~--~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~ 293 (877)
T KOG1215|consen 216 DDS--RIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDY 293 (877)
T ss_pred CCc--ceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCCCCcccccc
Confidence 543 799999999989999999999999999999999999999984 68999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCeEEEEeCCCCcEEEEEcCCCCCceeEEEecCeeEeecCCCcceEEeecccCcceEEEeccCCCceeE
Q psy5806 302 EEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381 (1332)
Q Consensus 302 ~~~rlYw~D~~~~~i~~~~~dG~~~~~v~~~~~~~p~~l~~~~~~~ywtd~~~~~i~~~~k~~g~~~~~i~~~~~~p~~i 381 (1332)
..+.+|| ..++|+.+++ |+...+.|+ ||++|....+.+..+.++....+........++.
T Consensus 294 ~~~~~~~---------~~~~d~~~~~-i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 353 (877)
T KOG1215|consen 294 CKKKLYW---------SMNVDGSGRR-ILLSKLCHG----------YWTDGLNECAERVLKCSHKCPDVSVGPRCDCMGA 353 (877)
T ss_pred cccceee---------eeecccCCce-eeecccCcc----------ccccccccchhhcccccCCCCccccCCcccCCcc
Confidence 9999999 6789999998 887777776 6999999888887777766554444433333444
Q ss_pred EEecCCCCccccccCC--CCcceeeecc-CCCceEEeCCCCceecCCCCCcC--CCccceeEeeecccccccccCCCCCc
Q psy5806 382 RSYHPHRQPNYQSHCA--PKVCSHICLP-NKHRFTCQCPLGLTLSPDNKSCS--ESPEELLIYARQKDLRISQLTEPSPT 456 (1332)
Q Consensus 382 ~~~h~~~qp~~~n~C~--~g~CshlCl~-~~~~~~C~C~~G~~L~~d~~tC~--~~~~~~ll~~~~~~i~~~~l~~~~~~ 456 (1332)
..++..... ..++|. +|+|+|+|++ .+++++|.|+.||.+..++ |. ...+.||+++++..||.++++..
T Consensus 354 ~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~~~--- 427 (877)
T KOG1215|consen 354 KVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLDCS--- 427 (877)
T ss_pred ceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccCCC---
Confidence 444433322 456676 8999999995 5789999999999998888 54 34577999999999999999876
Q ss_pred eeeEEeeeeccceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCCCCCccEEEeccCCeEEEEeCCCCeEEE
Q psy5806 457 FETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536 (1332)
Q Consensus 457 ~~~~~p~~~~~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~~~p~glAvDw~~~~lYw~d~~~~~I~v 536 (1332)
+...|+..+.++.++++|..++++||+|.....|.+...++.....+...+...|.|||+||+.+++||+|.....|++
T Consensus 428 -~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v 506 (877)
T KOG1215|consen 428 -DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNCLIEV 506 (877)
T ss_pred -cceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCceeEE
Confidence 3477888888899999999999999999999999999999988777888899999999999999999999999999999
Q ss_pred EeCCCCCcEEEEeCCCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeC
Q psy5806 537 SNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616 (1332)
Q Consensus 537 ~~l~g~~~~~l~~~~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~ 616 (1332)
.+++|..+.+|+...+..||+++|+|..|+|||+||+..++|+|+.|||+.+.+++..++.||+||++|+.++++||+|.
T Consensus 507 ~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~ 586 (877)
T KOG1215|consen 507 ADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADA 586 (877)
T ss_pred EEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcc
Confidence 99999999999999999999999999999999999998779999999999999999999999999999999999999999
Q ss_pred CCC-eEEEEecCCCceEEEEe--ecc---eEE-----------------------Ee------eecCceeEEEE-eCCCC
Q psy5806 617 GLK-TIEFTNLDGTRKQTLIA--LHH---LKV-----------------------MT------KVVGLTDIDIF-HRRRS 660 (1332)
Q Consensus 617 ~~~-~I~~~~~dG~~~~~~~~--~~~---l~v-----------------------~~------~~~~~~~i~v~-~~~~q 660 (1332)
.+. .|++++++|..|+++.. ++| +++ .. +...++.+.++ +...|
T Consensus 587 ~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (877)
T KOG1215|consen 587 KLDYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSNLAQPLDIILVHHSSSR 666 (877)
T ss_pred cCCcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecccCcccceEEEeccccC
Confidence 999 89999999999983322 666 554 00 01123444455 44333
Q ss_pred -cCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeeccccc
Q psy5806 661 -KKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLK 739 (1332)
Q Consensus 661 -~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~ 739 (1332)
+..|+|..+||+|+|||++.|... +|+||.|+.|..++++|.+ +..+++++.+..|+.+.++........++..
T Consensus 667 ~~~~n~C~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 741 (877)
T KOG1215|consen 667 PTGVNPCESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCSS-PEGYLLITSRTGIPCISLDSELSPDQPLEDG--- 741 (877)
T ss_pred CCCCCcccccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeecC-cccccccccccccceeecCcccCCCcccCCC---
Confidence 459999999999999999999855 9999999999999999997 7889999999999999988754433333221
Q ss_pred ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCC-----
Q psy5806 740 MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGK----- 814 (1332)
Q Consensus 740 ~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~----- 814 (1332)
+..++..+|++...+...+...++.....++..+...+.++|+++..+.|||+......|.+..+++.
T Consensus 742 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 814 (877)
T KOG1215|consen 742 -------DTIDRLEYWTDVRVGVAAVSSQNCAPGYDLVGEGEPPPEGSAVDEAEDTLYWTCSATSFIEVSGLDGERKCRR 814 (877)
T ss_pred -------cccccceecccccceeeEEEecCCCCccccccccCCCCCCceeehhhcceEEEeecccEEEEEEEeeeccccc
Confidence 66778899998887777777777666555777778899999999999999999999999999999874
Q ss_pred -ceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-cccCceeEE
Q psy5806 815 -NAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE-VIWPSCLAI 879 (1332)
Q Consensus 815 -~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~-l~~P~gl~i 879 (1332)
....+.......|+.+.+.|....++|+++... +.|.++.++|+++..++.. +..|+++++
T Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (877)
T KOG1215|consen 815 RPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEPG----PKIPRSALDGSERLVLFKSLLSCPNALAL 877 (877)
T ss_pred ccccccccCCCCCCcceeeccccceeccCCcccc----ceeeecccccccccceeccCCCCccCCCC
Confidence 223334455678999999999999999998444 8999999999999888887 889998863
No 3
>KOG1214|consensus
Probab=100.00 E-value=1.2e-46 Score=433.19 Aligned_cols=286 Identities=30% Similarity=0.522 Sum_probs=259.2
Q ss_pred ccceEeeccceeEEEecCCCCCcc----eeeecccccceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCC
Q psy5806 707 SKFLLVSQTDKIRQISLDVEYRYP----IVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLN 782 (1332)
Q Consensus 707 ~~~ll~s~~~~i~~i~l~~~~~~~----~~~~~~~~~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~ 782 (1332)
..+|||++...|..+.++...+.. .++.++ .+-+++||||.++.+|||+|+...+|.|+.++|+..++++..+|.
T Consensus 990 gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p-~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~ 1068 (1289)
T KOG1214|consen 990 GTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLP-GSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLI 1068 (1289)
T ss_pred cceEEEeccceEEEeecCcchhchhhhhceEecc-cceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCC
Confidence 469999999999999998754322 223332 456899999999999999999999999999999999999999999
Q ss_pred CccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCC
Q psy5806 783 RTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGT 862 (1332)
Q Consensus 783 ~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~ 862 (1332)
.|+||||||++||+||+|+...+|+|+.|||+.|++|+.++|-+||+|++|+.+|.|||+||... +|+|++..|||+
T Consensus 1069 SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRe---nPkIets~mDG~ 1145 (1289)
T KOG1214|consen 1069 SPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRE---NPKIETSSMDGE 1145 (1289)
T ss_pred CccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeecccccc---CCcceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999876 699999999999
Q ss_pred CcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCCCCEEEEEE
Q psy5806 863 NRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941 (1332)
Q Consensus 863 ~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~~~~i~~~~ 941 (1332)
||++|++. +..||||++|... +.|.|+|+++.+++.+.++|..|+++...|+.||+|+.+++.+|||||..++|..++
T Consensus 1146 NrRilin~DigLPNGLtfdpfs-~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk~n~vvsv~ 1224 (1289)
T KOG1214|consen 1146 NRRILINTDIGLPNGLTFDPFS-KLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWKRNGVVSVN 1224 (1289)
T ss_pred cceEEeecccCCCCCceeCccc-ceeeEEecCCcceeEecCCCCcchhhhhcccCceeeeeccccceeeccccCceEEee
Confidence 99999998 9999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEeeee------cCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCee
Q psy5806 942 KYDVKDIVEFAQ------VDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGIL 999 (1332)
Q Consensus 942 ~~~g~~i~~~~~------~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~ 999 (1332)
+..+..-...++ ++|. ++.+..+.+ .+||+.+||||.||||++-.+..|.||+...
T Consensus 1225 ~~~~~~td~~~p~~~s~lyGIt-av~~~Cp~g-stpCSedNGGCqHLCLpgqngavcecpdnvk 1286 (1289)
T KOG1214|consen 1225 KHSGQFTDEYLPEQRSHLYGIT-AVYPYCPTG-STPCSEDNGGCQHLCLPGQNGAVCECPDNVK 1286 (1289)
T ss_pred ccccccccccccccccceEEEE-eccccCCCC-CCcccccCCcceeecccCcCCccccCCccce
Confidence 988822222222 7777 666667777 9999999999999999999999999998654
No 4
>KOG1214|consensus
Probab=100.00 E-value=8.4e-46 Score=426.35 Aligned_cols=298 Identities=27% Similarity=0.519 Sum_probs=266.1
Q ss_pred CCcccccc---CcceEEEEeecceEEEEeCCCCCCCC----cccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECC
Q psy5806 1003 DRRSCFSR---TREFLLYTSRFGVIRRISLDTADLLP----VTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMS 1075 (1332)
Q Consensus 1003 d~~tC~~~---p~~~ll~~~~~~~i~~i~l~~~~~~~----~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~ 1075 (1332)
++..|... +..||||++..+ |..+++.+....+ .++.+++ +-++|||||-++++|||+|+...+|.+..|+
T Consensus 978 p~~~~~v~p~~~gt~LL~aqg~~-I~~lplng~~~~K~~ak~~l~~p~-~IiVGidfDC~e~mvyWtDv~g~SI~rasL~ 1055 (1289)
T KOG1214|consen 978 PTPRPDVTPPSVGTFLLYAQGQQ-IGYLPLNGTRLQKDAAKTLLSLPG-SIIVGIDFDCRERMVYWTDVAGRSISRASLE 1055 (1289)
T ss_pred CCCCCCCcCCCCcceEEEeccce-EEEeecCcchhchhhhhceEeccc-ceeeeeecccccceEEEeecCCCcccccccc
Confidence 45666543 467999999999 9999998764433 2233433 3478999999999999999999999999999
Q ss_pred CCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCC
Q psy5806 1076 DSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1076 ~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~ 1154 (1332)
|+..++++..++.+|+||||||+.|++||||+..++|+|+.|||+.+++ +.+++-+||+|++||.+|.||||||..
T Consensus 1056 -G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnR-- 1132 (1289)
T KOG1214|consen 1056 -GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNR-- 1132 (1289)
T ss_pred -CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccc--
Confidence 8999999999999999999999999999999999999999999999999 677999999999999999999999987
Q ss_pred CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCc
Q psy5806 1155 NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPG 1233 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~ 1233 (1332)
..++|++++|||+++++|+++++..||||+||+..+.|-|+|++++|++.+.++|..|+++.+ ++.||+|+-
T Consensus 1133 --enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~its----- 1205 (1289)
T KOG1214|consen 1133 --ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITS----- 1205 (1289)
T ss_pred --cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceeeee-----
Confidence 468999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred cccccEEEEEECCCCEEEEEEecCCCCcceE-EEEecCCCCeeeEEEEeCCCCCCCCCCCCCCCCCCccceeccCCCCce
Q psy5806 1234 KAFIVELYWTDWEAMSVVIAREKSDTGQWDV-HLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYV 1312 (1332)
Q Consensus 1234 ~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~~~~~~q~~~n~C~~~ng~C~~lC~~~~~~~~~~ 1312 (1332)
+++.+|||||..++|..++|+.+ +-. ..+-....++.+|.++.+.-..+.+||+.+||||.||||+. .++++
T Consensus 1206 --y~~~fY~TDWk~n~vvsv~~~~~---~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpg--qngav 1278 (1289)
T KOG1214|consen 1206 --YADHFYHTDWKRNGVVSVNKHSG---QFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPG--QNGAV 1278 (1289)
T ss_pred --ccccceeeccccCceEEeecccc---ccccccccccccceEEEEeccccCCCCCCcccccCCcceeecccC--cCCcc
Confidence 99999999999999999999987 322 23334556799999999887789999999999999999987 67899
Q ss_pred eeCCCCC
Q psy5806 1313 CGCPDDL 1319 (1332)
Q Consensus 1313 C~C~~~~ 1319 (1332)
|.||+.-
T Consensus 1279 cecpdnv 1285 (1289)
T KOG1214|consen 1279 CECPDNV 1285 (1289)
T ss_pred ccCCccc
Confidence 9999865
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.74 E-value=9.7e-16 Score=172.37 Aligned_cols=214 Identities=23% Similarity=0.258 Sum_probs=159.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI- 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~- 1125 (1332)
+.++.|++.++.|||+|...++|+++++. +...+++. ...|.|++++...+.||+++... +.+.+++....+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~-~~~~~~~~---~~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPD-TGEVEVID---LPGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEEE---SSSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECC-CCeEEEEe---cCCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEE
Confidence 46889999999999999999999999976 33332322 22399999997789999999754 4445776443333
Q ss_pred Eec-----CCCCceEEEEcCCCcEEEEEecCCCCCCCC--CcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1126 LVN-----DLMEPLAIAVYPRRGLLFYSHWGLYDNSPT--TKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1126 ~~~-----~~~~P~~iavdp~~g~Lywtd~~~~~~~~~--~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
+.. .+..|+++++|| +|.||+|+.+....... ++|+|++.+|+ .+.+. .++..||||+++++++.||++|
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecc
Confidence 221 467899999999 78899999765221112 67999999944 33444 4689999999999999999999
Q ss_pred cCCCeEEEEecCC--C---ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1199 STNKRIEYCDFFG--R---SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG--~---~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
+..++|++++++. . ++++++. ...|.||++ |.+|+||++++..++|.++++. | .-...+..
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~v------D~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~ 222 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAV------DSDGNLWVADWGGGRIVVFDPD-G---KLLREIEL 222 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEE------BTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceE------cCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcC
Confidence 9999999999973 3 3556655 235999999 6688999999999999999987 6 55666666
Q ss_pred CCCCeeeEEE
Q psy5806 1270 NQEDFLNIKA 1279 (1332)
Q Consensus 1270 ~~~~~~~i~~ 1279 (1332)
..+.+..+..
T Consensus 223 p~~~~t~~~f 232 (246)
T PF08450_consen 223 PVPRPTNCAF 232 (246)
T ss_dssp SSSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 6667776654
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.72 E-value=3.6e-15 Score=196.68 Aligned_cols=299 Identities=17% Similarity=0.160 Sum_probs=206.7
Q ss_pred EEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEec--------------cCCcceEEEEe--CCEEEE
Q psy5806 866 VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA--------------VQSHPYTLTVL--DYYVYW 929 (1332)
Q Consensus 866 ~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~--------------~~~~P~~la~~--~~~iyw 929 (1332)
.+.+.+..|.|+++|..+ ++||++|...++|..++.+|.....+.. .+..|.||++. ++.||+
T Consensus 562 ~~~s~l~~P~gvavd~~~-g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLN-NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred cccccCCCCceEEEECCC-CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 334458999999999987 8999999999999999999876544432 25679999997 568999
Q ss_pred EeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccc
Q psy5806 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFS 1009 (1332)
Q Consensus 930 tD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~ 1009 (1332)
+|..+++|++++..++.+. .+... + . .|... ++
T Consensus 641 aDt~n~~Ir~id~~~~~V~----------tlag~---G----------~-----------------~g~~~--~g----- 673 (1057)
T PLN02919 641 ADTENHALREIDFVNETVR----------TLAGN---G----------T-----------------KGSDY--QG----- 673 (1057)
T ss_pred EeCCCceEEEEecCCCEEE----------EEecc---C----------c-----------------ccCCC--CC-----
Confidence 9999999998886655210 11100 0 0 00000 00
Q ss_pred cCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee----
Q psy5806 1010 RTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---- 1085 (1332)
Q Consensus 1010 ~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---- 1085 (1332)
.. ......+..|.++++++.++.||++|..++.|+++++.++. ..++..
T Consensus 674 -----------g~---------------~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~-v~~~~G~G~~ 726 (1057)
T PLN02919 674 -----------GK---------------KGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV-TRVFSGDGYE 726 (1057)
T ss_pred -----------Ch---------------hhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe-EEEEecCCcc
Confidence 00 00001234578999999889999999999999999876432 222111
Q ss_pred ----------cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe----------------------cCCCCc
Q psy5806 1086 ----------MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV----------------------NDLMEP 1133 (1332)
Q Consensus 1086 ----------~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~----------------------~~~~~P 1133 (1332)
.....|.|||++..++.||++|..+++|.++++++....++. ..+..|
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 124579999999988999999999999999998743322211 124579
Q ss_pred eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-------------CCCCcceEEEecCCCEEEEEEcC
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-------------DLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-------------~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
.+|++++ .|.||++|+++ ++|.+++.++.....+..+ .+..|.||++|.++ +||++|..
T Consensus 807 ~Gvavd~-dG~LYVADs~N------~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~ 878 (1057)
T PLN02919 807 LGVLCAK-DGQIYVADSYN------HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTN 878 (1057)
T ss_pred ceeeEeC-CCcEEEEECCC------CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECC
Confidence 9999998 67899999887 8999999987766555432 24579999999765 79999999
Q ss_pred CCeEEEEecCCCce--EEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1201 NKRIEYCDFFGRSR--KIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1201 ~~~I~~~d~dG~~~--~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
+++|..+|++.... ...+. ...|...+- ...+||.+....-.|..++
T Consensus 879 Nn~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 930 (1057)
T PLN02919 879 NSLIRYLDLNKGEAAEILTLELKGVQPPRPKSK-------SLKRLRRRSSADTQVIKVD 930 (1057)
T ss_pred CCEEEEEECCCCccceeEeeccccccCCCCccc-------chhhhhhcccccCceeecC
Confidence 99999999975432 11122 333432332 5567887744444444433
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.67 E-value=1.2e-14 Score=191.72 Aligned_cols=203 Identities=14% Similarity=0.162 Sum_probs=159.5
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec-------------CCCCceeeEEEecCCeEEEEcCC
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM-------------NDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~-------------~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
.+..|.++++|..++.||++|...++|++++++ |.....+... .+..|.|||+|..++.|||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 456678999999999999999999999999976 5433233221 13479999999888889999999
Q ss_pred CceEEEEeeCCceEEEEec-----------------CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE
Q psy5806 1110 MHTINVARSDGQHKKILVN-----------------DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT 1172 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~~~~~~~-----------------~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~ 1172 (1332)
+++|+++++.+....++.. .+..|.+|+++|.+|.||+++.+. ++|++.+..+....
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~------~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ------HQIWEYNISDGVTR 718 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC------CeEEEEECCCCeEE
Confidence 9999999987665554321 156899999999999999999876 78888887654433
Q ss_pred EEEe--------------cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-------------------
Q psy5806 1173 VLVE--------------EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS------------------- 1219 (1332)
Q Consensus 1173 ~l~~--------------~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~------------------- 1219 (1332)
.+.. ..+..|+||++++++++||++|..+++|.++|+++....++..
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 3221 1356799999999999999999999999999997544333220
Q ss_pred ----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+|.||++ +.++.||++|+.+++|.+++..++
T Consensus 799 ~~~~l~~P~Gvav------d~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 799 SEVLLQHPLGVLC------AKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred hhhhccCCceeeE------eCCCcEEEEECCCCEEEEEECCCC
Confidence 358999999 456679999999999999998776
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.49 E-value=4.6e-12 Score=142.55 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=149.7
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~ 820 (1332)
+.++.||..++.|||+|...+.|+++++++...+.+-. ..|.|++++...+.||+++... +.+.+++....+.+.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEEe
Confidence 45778999899999999999999999998765544333 2399999997779999999755 444476555445544
Q ss_pred ec-----CCCCCeEEEEeCCCCeEEEEecccCcCC---CCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeC
Q psy5806 821 WL-----NLYRPRSIVVHYGLGLMVWADWSRTRLT---NNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 821 ~~-----~~~~P~~Iavdp~~g~lywtd~g~~~~~---~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
.. .+..|.++++||. |.||+++.+..... .++|.|...+|+ ...+...+..||||+++.++ +.||++|.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~~~~~~pNGi~~s~dg-~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVADGLGFPNGIAFSPDG-KTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEEEEESSEEEEEEETTS-SEEEEEET
T ss_pred eccCCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEecCcccccceEECCcc-hheeeccc
Confidence 32 4567999999997 89999987644211 146888888844 34455559999999999999 99999999
Q ss_pred CCCeEEEEccCCCc-----eeEEec--c-CCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 893 SKHTIEYKTLATGR-----AKRAYA--V-QSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 893 ~~~~I~~~~~dG~~-----~~~l~~--~-~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
..++|.+++++... ++.+.. . ...|-|++++ +++||.+++..++|+++++. |+.+
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 99999999997432 344432 2 2359999998 68999999999999999988 6433
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.4e-11 Score=138.38 Aligned_cols=198 Identities=21% Similarity=0.298 Sum_probs=148.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
..+..|++..+.|||+|+..++|.+++..+ +...++......+.++.+| ..++|..++.+...+.. -.|..++.+
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~t~~ 101 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSPGGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKITLL 101 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECCCCcccceeec-CCCeEEEEccccEEEec--cCCceeEEe
Confidence 356678999999999999999999999653 3333444455568888898 67888777755434433 224442332
Q ss_pred e-----cCCCCceEEEEcCCCcEEEEEecC-----CCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEE
Q psy5806 1127 V-----NDLMEPLAIAVYPRRGLLFYSHWG-----LYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1127 ~-----~~~~~P~~iavdp~~g~Lywtd~~-----~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~ 1196 (1332)
. ..+.+|+.+.|+| .|.+|+++.+ .......++|+|++.+|... .++...+..||||+++++++.||+
T Consensus 102 ~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~-~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV-RLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEE-EeecCcEEecCceEECCCCCEEEE
Confidence 1 1457899999999 6999999987 22244567899999876554 455546899999999999999999
Q ss_pred EEcCCCeEEEEecC---CC--ceEEEEe----ecccceEEEecCCccccccEEE-EEECCCCEEEEEEecCC
Q psy5806 1197 ADSTNKRIEYCDFF---GR--SRKIVIS----KVAPYGLSVRQSPGKAFIVELY-WTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~d---G~--~~~~~~~----~~~P~glav~~~~~~~~~~~lY-wtd~~~~~V~~~~~~~g 1258 (1332)
+|+..++|.+++++ |. +++..+. ...|.|+++ |.++.|| .+-|+.+.|.+.++. |
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v------DadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV------DADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE------eCCCCEEEecccCCceEEEECCC-C
Confidence 99999999999998 43 3333332 589999999 7788888 666776799999988 6
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=4.7e-10 Score=132.60 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=149.4
Q ss_pred CccceEEEEEeCCCcEEEEEeCCCCeEEEEECCC-CCCcee--Eee----------cCCCCceeeEEEecCCeEEEEcCC
Q psy5806 1043 EYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD-STRIKP--IPL----------MNDTIRDNFVIDWVANNIYYIDSQ 1109 (1332)
Q Consensus 1043 ~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~-g~~~~~--i~~----------~~~~~p~glAvDw~~~~LY~td~~ 1109 (1332)
....|..+++++.++.||+++...+.|..++++. |.-.+. ++. .....|+.+.+++.++.||++|.+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 3456889999999999999999999998888874 222222 110 123478899999999999999999
Q ss_pred CceEEEEeeCCce--E-E--EE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC--CCceEEE--Eec--
Q psy5806 1110 MHTINVARSDGQH--K-K--IL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD--GSYRTVL--VEE-- 1177 (1332)
Q Consensus 1110 ~~~I~v~~ldG~~--~-~--~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld--G~~~~~l--~~~-- 1177 (1332)
.++|.+++++... . . .+ ...-..||+|+++|...++|+++... +.|..++++ ....+.+ +.+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTEEEEEEEEESCE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC------CcEEEEeecccCCceeEEEEeeecc
Confidence 9999999998543 2 1 12 12336799999999889999998765 678877777 2222222 111
Q ss_pred -C---CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCC--ceEEE--Ee--ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1178 -D---LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR--SRKIV--IS--KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1178 -~---l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~--~~~~~--~~--~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
+ -..|.+|+|+++++.||+++...+.|..+++|.. ..+.+ +. +..|.+|++ ++.+.+||+++..+
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----SPDGRYLYVANQDS 313 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------TTSSEEEEEETTT
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----eCCCCEEEEEecCC
Confidence 1 1268899999999999999999999999999643 22222 22 678999999 77899999999999
Q ss_pred CEEEEEEe--cCC
Q psy5806 1248 MSVVIARE--KSD 1258 (1332)
Q Consensus 1248 ~~V~~~~~--~~g 1258 (1332)
+.|..++. .+|
T Consensus 314 ~~v~vf~~d~~tG 326 (345)
T PF10282_consen 314 NTVSVFDIDPDTG 326 (345)
T ss_dssp TEEEEEEEETTTT
T ss_pred CeEEEEEEeCCCC
Confidence 99986655 455
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=6.6e-09 Score=122.82 Aligned_cols=296 Identities=14% Similarity=0.140 Sum_probs=189.9
Q ss_pred EEEEeCCC---CeEEEEeCCCC---ceEEEEecCCCCCeEEEEeCCCCeEEEEecc--cCcCCCCceEEEecCCC-CcEE
Q psy5806 796 IYWTDMNA---QTIMVSDIDGK---NAKVLFWLNLYRPRSIVVHYGLGLMVWADWS--RTRLTNNRIEMAHMDGT-NRAV 866 (1332)
Q Consensus 796 LYwtD~~~---~~I~v~~ldG~---~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g--~~~~~~~~I~r~~~dG~-~~~~ 866 (1332)
+|+..... +.|.+.++|.. ...+-......+|.-|+++|.+.+||.++.. .. +.|.....+.. ....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~----g~v~~~~i~~~~g~L~ 77 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDS----GGVSSYRIDPDTGTLT 77 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTT----TEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCC----CCEEEEEECCCcceeE
Confidence 44444433 66777777432 2222222345789999999999999999875 33 67877776654 3333
Q ss_pred Eecc----cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCC--CceeE--Ee-----------ccCCcceEEEEe--CC
Q psy5806 867 FETE----VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT--GRAKR--AY-----------AVQSHPYTLTVL--DY 925 (1332)
Q Consensus 867 l~~~----l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG--~~~~~--l~-----------~~~~~P~~la~~--~~ 925 (1332)
+.+. ...|..+++|.++ +.||++....+.+..++++. .-... +. +...||..+.+. +.
T Consensus 78 ~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 78 LLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred EeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 3332 5678899999999 99999999999998888764 22222 11 135788888776 56
Q ss_pred EEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCc
Q psy5806 926 YVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005 (1332)
Q Consensus 926 ~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~ 1005 (1332)
++|.+|...++|+..+ .....+ .|
T Consensus 157 ~v~v~dlG~D~v~~~~--------------------~~~~~~-------------------------------~l----- 180 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYD--------------------IDDDTG-------------------------------KL----- 180 (345)
T ss_dssp EEEEEETTTTEEEEEE--------------------E-TTS--------------------------------TE-----
T ss_pred EEEEEecCCCEEEEEE--------------------EeCCCc-------------------------------eE-----
Confidence 8888898888876532 110000 00
Q ss_pred cccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-eeEe
Q psy5806 1006 SCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-KPIP 1084 (1332)
Q Consensus 1006 tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~ 1084 (1332)
.. ...+ .++....|..+.|++.++++|+++...++|..++++..++. +.+.
T Consensus 181 ------------~~----~~~~------------~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 181 ------------TP----VDSI------------KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ 232 (345)
T ss_dssp ------------EE----EEEE------------ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ------------EE----eecc------------ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence 00 0011 11233458899999999999999999999988887722222 1111
Q ss_pred -ec-------CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC---ceEEE--EecCCCCceEEEEcCCCcEEEEEecC
Q psy5806 1085 -LM-------NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG---QHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1085 -~~-------~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG---~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
.. +...|.+|++++.++.||+++...+.|.++++|. ....+ +..+-..|++++++|...+||+++..
T Consensus 233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 11 1126889999999999999999999999999953 33333 44455679999999999999999977
Q ss_pred CCCCCCCCcEEEEecC--CCceEEEEe-cCCCCcceEE
Q psy5806 1152 LYDNSPTTKIEKVYLD--GSYRTVLVE-EDLAFPNELA 1186 (1332)
Q Consensus 1152 ~~~~~~~~~I~r~~ld--G~~~~~l~~-~~l~~p~gla 1186 (1332)
. ..|....+| ....+.+.. ..+..|..|.
T Consensus 313 s------~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 313 S------NTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp T------TEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred C------CeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 456655554 333333332 3456666554
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=4.2e-09 Score=124.06 Aligned_cols=297 Identities=11% Similarity=0.067 Sum_probs=188.4
Q ss_pred CeEEEEeCCCCeEEEEeCC--CCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc-
Q psy5806 794 RKIYWTDMNAQTIMVSDID--GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE- 870 (1332)
Q Consensus 794 ~nLYwtD~~~~~I~v~~ld--G~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~- 870 (1332)
..+|+++...+.|.+.+++ |+...+-.......|..|+++|...+||++.+.. ..|.....++.....+...
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~ 76 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAES 76 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeee
Confidence 4589999888999999985 4332221122236799999999988899987643 3676666664433333222
Q ss_pred --cccCceeEEeCCCCCeEEEEeCCCCeEEEEccC--CCceeEE--eccCCcceEEEEe--CCEEEEEeCCCCEEEEEEC
Q psy5806 871 --VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA--TGRAKRA--YAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANK 942 (1332)
Q Consensus 871 --l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~d--G~~~~~l--~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~ 942 (1332)
...|.+++++..+ +.||.+....+.|..++++ |...+.+ .....+|.++++. +.++|.++...++|...+.
T Consensus 77 ~~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 77 PLPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred cCCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence 4578999999999 9999999888888887775 3222222 1234567777766 4578888877777654221
Q ss_pred CCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecc
Q psy5806 943 YDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFG 1022 (1332)
Q Consensus 943 ~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~ 1022 (1332)
. . .+ ..... ....
T Consensus 156 ~--------------------~-~g--------------------------------------~l~~~--------~~~~ 168 (330)
T PRK11028 156 S--------------------D-DG--------------------------------------HLVAQ--------EPAE 168 (330)
T ss_pred C--------------------C-CC--------------------------------------ccccc--------CCCc
Confidence 0 0 00 00000 0000
Q ss_pred eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-eeEeec--------CCCCcee
Q psy5806 1023 VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-KPIPLM--------NDTIRDN 1093 (1332)
Q Consensus 1023 ~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~~--------~~~~p~g 1093 (1332)
+ .++....|..++|++.+++||+++...++|..++++.+++. +.+... +...|.+
T Consensus 169 -~---------------~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 169 -V---------------TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred -e---------------ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 0 00111236678899999999999988899988887632222 221111 1123457
Q ss_pred eEEEecCCeEEEEcCCCceEEEEeeC--CceEEE---EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1094 FVIDWVANNIYYIDSQMHTINVARSD--GQHKKI---LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~~~I~v~~ld--G~~~~~---~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
|++++.++.||+++...+.|.+++++ +...+. +..+ ..|++++++|...+||.++.+. +.|....++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~------~~v~v~~~~~ 305 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKS------HHISVYEIDG 305 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccC------CcEEEEEEcC
Confidence 99999999999999888899999885 332222 2233 5899999999988999998755 4555555543
Q ss_pred C--ceEEE--EecCCCCcceEEE
Q psy5806 1169 S--YRTVL--VEEDLAFPNELAI 1187 (1332)
Q Consensus 1169 ~--~~~~l--~~~~l~~p~glai 1187 (1332)
. ..+.+ +.. -..|++++|
T Consensus 306 ~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CCCcEEEcccccc-CCCceEEEE
Confidence 2 22222 222 357888877
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=3.6e-09 Score=124.66 Aligned_cols=199 Identities=11% Similarity=0.083 Sum_probs=144.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCC-CCCceeEe-ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC--
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD-STRIKPIP-LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-- 1120 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~-g~~~~~i~-~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-- 1120 (1332)
.+|..+++++.++.||.++...+.|..++++. |...+.+. ..+...|.++++++.++.||+++...+.|.+++++.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 46889999999999999998889998888752 22222221 123457899999999999999999999999999974
Q ss_pred ceE----E-E-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC--CceEEEEe-----c---CCCCcce
Q psy5806 1121 QHK----K-I-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG--SYRTVLVE-----E---DLAFPNE 1184 (1332)
Q Consensus 1121 ~~~----~-~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG--~~~~~l~~-----~---~l~~p~g 1184 (1332)
... . . +..+ ..|++++++|...+||.++.+. +.|...+++. ...+.+.. . .-.+|.+
T Consensus 160 ~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 160 HLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELN------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred cccccCCCceecCCC-CCCceEEECCCCCEEEEEecCC------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 211 1 1 2223 5799999999889999998765 6777777752 12222211 1 1124557
Q ss_pred EEEecCCCEEEEEEcCCCeEEEEecC--CCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYCDFF--GRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~d~d--G~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
|++++++++||.++...+.|..++++ +...+.+.. ...|.++++ ++++.+||+++..++.|..++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~-----~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNI-----DHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEE-----CCCCCEEEEEEccCCcEEEEEE
Confidence 99999999999999888999998885 333333322 568999999 5678999999998887776654
No 14
>KOG4659|consensus
Probab=99.25 E-value=1.4e-06 Score=108.35 Aligned_cols=369 Identities=17% Similarity=0.173 Sum_probs=213.9
Q ss_pred cceEEEEEEccCCeEEEEcCCCceEEEEEecCcceEEEEeCCC---CCCccEEEeccCCeEEEEeCCCCeEEEE-eCCCC
Q psy5806 467 KSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT---KKPAGVAIDWRTNKLYWTESEYNWIEVS-NLDGT 542 (1332)
Q Consensus 467 ~~~~~i~~d~~~~~lywsD~~~~~I~r~~~~g~~~~~v~~~~~---~~p~glAvDw~~~~lYw~d~~~~~I~v~-~l~g~ 542 (1332)
-.++|+++-+ ++.||+-| -+.|.|+..+|.- .+|+.-+. .+-.=||+|++.+.||.+|....+|.+. ++.++
T Consensus 365 ~aPvala~a~-DGSl~VGD--fNyIRRI~~dg~v-~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~ 440 (1899)
T KOG4659|consen 365 FAPVALAYAP-DGSLIVGD--FNYIRRISQDGQV-STILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQ 440 (1899)
T ss_pred eceeeEEEcC-CCcEEEcc--chheeeecCCCce-EEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcc
Confidence 3467888866 89999987 4789999999864 34444343 3445699999999999999998887755 45543
Q ss_pred ----CcEEEEeC--------------------CCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEE-------
Q psy5806 543 ----YPTLLFWQ--------------------NLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL------- 591 (1332)
Q Consensus 543 ----~~~~l~~~--------------------~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l------- 591 (1332)
.-+++... .|..|++||+|.. |.||++| ..+|.+..-+|--+..+
T Consensus 441 d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~-g~lYfaD---~t~IR~iD~~giIstlig~~~~~~ 516 (1899)
T KOG4659|consen 441 DSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKM-GNLYFAD---GTRIRVIDTTGIISTLIGTTPDQH 516 (1899)
T ss_pred ccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccC-CcEEEec---ccEEEEeccCceEEEeccCCCCcc
Confidence 12333321 2778999999986 9999999 45677777666433322
Q ss_pred -----------EeCCCCCceeeEEeccCCeEEEEeCCCCeEEEEecCCCceEEEEeecceEEEeeecCceeEEEEeCCCC
Q psy5806 592 -----------ASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRS 660 (1332)
Q Consensus 592 -----------~~~~l~~p~glaiD~~~~rLYw~d~~~~~I~~~~~dG~~~~~~~~~~~l~v~~~~~~~~~i~v~~~~~q 660 (1332)
..-.+.||..||||+-.+.||+.|. +.|.+++.++.-+ ++.. .
T Consensus 517 ~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~rV~-Ii~G-----------------------r 570 (1899)
T KOG4659|consen 517 PPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVHRVR-IILG-----------------------R 570 (1899)
T ss_pred CccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCccEE-EEcC-----------------------C
Confidence 2234789999999999999999986 5788887776533 2211 0
Q ss_pred cCcCCCcCCCCCCccccccCCCCCceeeCCCCccccCCCCccccCCccceEeeccceeEEEecCCCCCcceeeecccccc
Q psy5806 661 KKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKM 740 (1332)
Q Consensus 661 ~~~~pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC~~~~~~~ll~s~~~~i~~i~l~~~~~~~~~~~~~~~~~ 740 (1332)
+--|...| . + .++. ++..+ ..+..
T Consensus 571 --P~hC~~a~-----------~-t-----------------------~~~s--------kla~H-----------~tl~~ 594 (1899)
T KOG4659|consen 571 --PTHCDLAN-----------A-T-----------------------SSAS--------KLADH-----------RTLLI 594 (1899)
T ss_pred --ccccccCC-----------C-c-----------------------hhhh--------hhhhh-----------hhhhh
Confidence 11122110 0 0 0000 00000 01112
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEE
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~ 820 (1332)
+.+|++... |.||++.+...+|.|+..-+++-+.-+-.|...|-.--+|.. +|. +++++-..+
T Consensus 595 ~r~Iavg~~-G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~------cdc-------fs~~~~~At--- 657 (1899)
T KOG4659|consen 595 QRDIAVGTD-GALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAAC------CDC-------FSLRDVAAT--- 657 (1899)
T ss_pred hhceeecCC-ceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccC------Ccc-------ccccchhhh---
Confidence 245555543 899999998888777654444433334444433333222211 111 122221111
Q ss_pred ecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc----c--ccCcee---EEeCCCCCeEEE--
Q psy5806 821 WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE----V--IWPSCL---AIDYSDNPKLYW-- 889 (1332)
Q Consensus 821 ~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~----l--~~P~gl---~iD~~~~~~lYw-- 889 (1332)
...++.|.++||.|. |.+|.+|.|+.+++.-.-..+.++|++.-.+.+. + ..-.|. ++...+-+.+|-
T Consensus 658 ~A~lnsp~alaVsPd-g~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~sTvsliTget~ynFt 736 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPD-GDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSSTVSLITGETFYNFT 736 (1899)
T ss_pred ccccCCcceEEECCC-CcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeeeeEEEEeceeEEEEE
Confidence 234678999999998 9999999887632111112345667654443321 0 000111 111111023332
Q ss_pred --EeCCCCeE-EEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCC-CCEEEEEECC
Q psy5806 890 --VDTSKHTI-EYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQ-HSKIYRANKY 943 (1332)
Q Consensus 890 --~d~~~~~I-~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~-~~~i~~~~~~ 943 (1332)
+|...+.| +..+-+|...+++....+.|..+...++.++|+-.. ++.+.++.+.
T Consensus 737 Y~v~ss~~~lsei~~a~Gn~l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~vSt~ 794 (1899)
T KOG4659|consen 737 YQVDSSIGMLSEITDASGNVLRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQVSTR 794 (1899)
T ss_pred EecCCCcchhhhhhhcCCcEEEEEecCCCCcceeecCCCcEEEEEEecCCceeEeccC
Confidence 33344444 233456777777766777787788888888887543 4566665544
No 15
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.10 E-value=1.1e-10 Score=91.12 Aligned_cols=42 Identities=38% Similarity=1.055 Sum_probs=40.0
Q ss_pred CeEEEEecCCCCceeEecCCCCCcEEEecCCccCceeeeeec
Q psy5806 260 AFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301 (1332)
Q Consensus 260 g~~fwtd~g~~~~Iera~mdGs~~~~l~~~~~~~p~gl~iD~ 301 (1332)
|+|||||++..++|++++|||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 689999999889999999999999999999999999999994
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=1.4e-08 Score=121.18 Aligned_cols=201 Identities=13% Similarity=0.183 Sum_probs=155.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+.++++++....+|+++...+.|..++.. ....+.....+...|.|++++..+.++|+++...+.|.+++.+......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 578999999999999999887777766633 2222222223336899999999999999999999999999966443333
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
+..+ ..|.+++++|..+++|+++.+. ....|..++-........+..+ ..|.++++|++++++|+++..+++|
T Consensus 111 ~~~vG-~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 111 SIPVG-LGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNKVTATIPVG-NTPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred Eeeec-cCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCeEEEEEecC-CCcceEEECCCCCeEEEEecCCCeE
Confidence 3334 3899999999999999999852 1367888877665544444333 3689999999999999999999999
Q ss_pred EEEecCCCceEE-----EEe-ecccceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1205 EYCDFFGRSRKI-----VIS-KVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~~~~-----~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
..+|..+..... .+. +..|.++++ ++.+.++|+++..+ +.|.+++..++
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v-----~~~g~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGPAGIAV-----DPDGNRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EEEeCCCcceeccccccccccCCCCceEEE-----CCCCCEEEEEeccCCCceEEEEeCCCc
Confidence 999987765442 233 889999999 67788899999988 79999998776
No 17
>KOG4659|consensus
Probab=99.03 E-value=5.9e-09 Score=128.55 Aligned_cols=225 Identities=18% Similarity=0.201 Sum_probs=159.3
Q ss_pred CcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCC----CceeEeec
Q psy5806 1011 TREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST----RIKPIPLM 1086 (1332)
Q Consensus 1011 p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~----~~~~i~~~ 1086 (1332)
|.-.|++-..+- ||+|+-+....+.+.+.........=||.+|.++.||++|.....|+|+.-.++. +-+++...
T Consensus 374 ~DGSl~VGDfNy-IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 374 PDGSLIVGDFNY-IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred CCCcEEEccchh-eeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 455666667787 9999988765544444334444567889999999999999999999988533222 22444433
Q ss_pred C--------------------CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec------------------
Q psy5806 1087 N--------------------DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN------------------ 1128 (1332)
Q Consensus 1087 ~--------------------~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~------------------ 1128 (1332)
+ +..|.||||| ..++||++|.. .|+++|.+|-..+++.+
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence 2 4479999999 68999999965 68899988865554311
Q ss_pred -CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-------------------cCCCCcceEEEe
Q psy5806 1129 -DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-------------------EDLAFPNELAID 1188 (1332)
Q Consensus 1129 -~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-------------------~~l~~p~glaiD 1188 (1332)
.+..|..|||+|..+.||+-|.+ .|.|++.++.-+.++-. ..+..|..||+.
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld~n--------vvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg 601 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLDTN--------VVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG 601 (1899)
T ss_pred eeeecccceeecCCCCeEEEeecc--------eEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec
Confidence 35689999999999999999854 59999888866532210 012346788988
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCCceEEE--------------------------Ee---ecccceEEEecCCccccccE
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGRSRKIV--------------------------IS---KVAPYGLSVRQSPGKAFIVE 1239 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~~~~~~--------------------------~~---~~~P~glav~~~~~~~~~~~ 1239 (1332)
+ .+.||++++...+|.++..-++++++- +. +..|.+||| ..++.
T Consensus 602 ~-~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaV------sPdg~ 674 (1899)
T KOG4659|consen 602 T-DGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAV------SPDGD 674 (1899)
T ss_pred C-CceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEE------CCCCc
Confidence 5 579999999876665554433322211 11 678999999 56788
Q ss_pred EEEEECCCCEEEEEE
Q psy5806 1240 LYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1240 lYwtd~~~~~V~~~~ 1254 (1332)
+|++|.++-+|..+.
T Consensus 675 v~IAD~gN~rIr~Vs 689 (1899)
T KOG4659|consen 675 VIIADSGNSRIRKVS 689 (1899)
T ss_pred EEEecCCchhhhhhh
Confidence 999999887776443
No 18
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=99.03 E-value=7.7e-11 Score=87.31 Aligned_cols=36 Identities=50% Similarity=1.319 Sum_probs=32.6
Q ss_pred ccCCCCCCccccccCCCCccccCCCCeeEccCCccc
Q psy5806 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 972 C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
|+.+||||+|+|+++|++|+|+||.||.|.+|+++|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence 778899999999999999999999999999999998
No 19
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.00 E-value=2.6e-10 Score=85.66 Aligned_cols=36 Identities=61% Similarity=1.473 Sum_probs=34.4
Q ss_pred CCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 58 KCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 58 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
.|.+++|+|.++.||+..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 688999999999999999999999999999999887
No 20
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=6.9e-08 Score=115.35 Aligned_cols=197 Identities=14% Similarity=0.143 Sum_probs=153.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC-CceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT-IRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~-~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
..|.++++++.++++|..+...+.|+.++++. .. .+.....+ .|.+||+|+.++++|+++.. +++|.+++.+..
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~--~~-~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT--NT-VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc--cc-eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 44678899999999999999999999999542 22 22212222 89999999999999999994 688988888754
Q ss_pred eEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE-----EEecCCCCcceEEEecCCCEEE
Q psy5806 1122 HKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV-----LVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1122 ~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~-----l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
.... +..+ ..|.+++++|...++|.++... +.|..++..+..... .+. ....|.+++++++++++|
T Consensus 151 ~~~~~~~vG-~~P~~~a~~p~g~~vyv~~~~~------~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 151 KVTATIPVG-NTPTGVAVDPDGNKVYVTNSDD------NTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDPDGNRVY 222 (381)
T ss_pred eEEEEEecC-CCcceEEECCCCCeEEEEecCC------CeEEEEeCCCcceeccccccccc-cCCCCceEEECCCCCEEE
Confidence 4333 4334 4789999999988999999554 778888876655432 122 346799999999999999
Q ss_pred EEEcCC--CeEEEEecCCCceEEE-Ee---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1196 WADSTN--KRIEYCDFFGRSRKIV-IS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1196 ~~d~~~--~~I~~~d~dG~~~~~~-~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+++..+ +++.++|......... .. + .|.++++ .+.+.++|+++...+.|..++..+.
T Consensus 223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~-----~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAV-----DPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeE-----CCCCCEEEEEecCCCeEEEEeCCCC
Confidence 999988 6899988876554433 22 5 8999999 7789999999999999999998775
No 21
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.98 E-value=2.4e-10 Score=85.89 Aligned_cols=36 Identities=42% Similarity=0.937 Sum_probs=33.9
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
+|.+.+|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~-~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCG-NGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEET-TSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcC-CCCEEChHHcCCCCCCCCCCcccccC
Confidence 6899999999 78899999999999999999999876
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.98 E-value=3.6e-06 Score=97.02 Aligned_cols=296 Identities=11% Similarity=0.080 Sum_probs=166.0
Q ss_pred eEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEE
Q psy5806 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIV 831 (1332)
Q Consensus 752 ~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Ia 831 (1332)
.+|.+...++.|...+++.......+. ....|.+++++..++.||.+....+.|.+.++++......+. ....|..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CCCCccEEE
Confidence 567777777788877765433333333 234578999999888899998888899999986433222222 224588899
Q ss_pred EeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe
Q psy5806 832 VHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY 911 (1332)
Q Consensus 832 vdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~ 911 (1332)
++|...++|.+... . .+|...++...........-..|.++++++.+ ..++.+......+...+..........
T Consensus 80 ~~~~g~~l~~~~~~-~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 80 LHPNGKILYIANED-D----NLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred ECCCCCEEEEEcCC-C----CeEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99987778877533 2 36777766543211111112347788888877 666555433233333333322111100
Q ss_pred ccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCC
Q psy5806 912 AVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTN 989 (1332)
Q Consensus 912 ~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~ 989 (1332)
.....|.++++. +.+||.+-...+.|...+..
T Consensus 154 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~---------------------------------------------- 187 (300)
T TIGR03866 154 LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA---------------------------------------------- 187 (300)
T ss_pred EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC----------------------------------------------
Confidence 011122222221 11222221111221111100
Q ss_pred ccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeE
Q psy5806 990 FTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNL 1069 (1332)
Q Consensus 990 ~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I 1069 (1332)
....++.+....... + +....+.++.|++.++.+|++....++|
T Consensus 188 ------------------------------~~~~~~~~~~~~~~~-----~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 188 ------------------------------TRKVIKKITFEIPGV-----H-PEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred ------------------------------cceeeeeeeeccccc-----c-cccCCccceEECCCCCEEEEEcCCCCeE
Confidence 000011111110000 0 0112356788899888889887667788
Q ss_pred EEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EEEecCCCCceEEEEcC
Q psy5806 1070 RTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KILVNDLMEPLAIAVYP 1140 (1332)
Q Consensus 1070 ~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~~~~~~~~P~~iavdp 1140 (1332)
..+++.++.....+ .....|.+|++++.++.||.+....+.|.++++++... ..+..+ ..|.+||+.|
T Consensus 232 ~v~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 232 AVVDAKTYEVLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88887643322222 12346889999998999999887788999999985543 445444 7899999876
No 23
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.94 E-value=4e-10 Score=83.91 Aligned_cols=35 Identities=46% Similarity=1.025 Sum_probs=32.9
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCC
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C 50 (1332)
|.+.+|+|. ++.|||..|+|||..||.|||||.+|
T Consensus 1 C~~~~f~C~-~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcC-CCCeeCHHHcCCCccCCCCCcccccC
Confidence 678999998 69999999999999999999999876
No 24
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.94 E-value=2.9e-10 Score=84.26 Aligned_cols=36 Identities=58% Similarity=1.278 Sum_probs=32.2
Q ss_pred CcCCCCCCccccccCCCCCceeeCCCCccccCCCCcc
Q psy5806 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702 (1332)
Q Consensus 666 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~l~~d~~tC 702 (1332)
|+.+||||+|+|++.|+ +++|+||.||+|++|++||
T Consensus 1 C~~~NGgC~h~C~~~~g-~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPG-SYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETT-SEEEE-STTEEE-TTSSSE
T ss_pred CCCCCCCcCCCCccCCC-ceEeECCCCCEECcCCCCC
Confidence 67889999999999988 8999999999999999998
No 25
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.93 E-value=4.3e-10 Score=83.75 Aligned_cols=35 Identities=54% Similarity=1.363 Sum_probs=33.0
Q ss_pred CCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 59 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
|.+.+|+|.++.||+..++|||..||+|||||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 56789999999999999999999999999999876
No 26
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.6e-06 Score=96.38 Aligned_cols=240 Identities=12% Similarity=0.116 Sum_probs=159.5
Q ss_pred EEEEeCCCCC-CCCcccccCCccceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeec---CCCCceeeEEE
Q psy5806 1024 IRRISLDTAD-LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLM---NDTIRDNFVID 1097 (1332)
Q Consensus 1024 i~~i~l~~~~-~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~---~~~~p~glAvD 1097 (1332)
|..+.++... ......-+..+.||.-|++++++++||..... .+.|-.+.++.-++.-+++.. ....|..+++|
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd 97 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD 97 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC
Confidence 7778877432 22223335667899999999999999999866 677766666532233333321 22356899999
Q ss_pred ecCCeEEEEcCCCceEEEEeeC--CceEEE---E----------------------------------------------
Q psy5806 1098 WVANNIYYIDSQMHTINVARSD--GQHKKI---L---------------------------------------------- 1126 (1332)
Q Consensus 1098 w~~~~LY~td~~~~~I~v~~ld--G~~~~~---~---------------------------------------------- 1126 (1332)
..++.||.+++..+.|.|..++ |....+ +
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 9999999999999988887763 431111 0
Q ss_pred ---------ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC--ceEEE-----EecC---CCCcceEEE
Q psy5806 1127 ---------VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS--YRTVL-----VEED---LAFPNELAI 1187 (1332)
Q Consensus 1127 ---------~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~--~~~~l-----~~~~---l~~p~glai 1187 (1332)
...-..||.|+++|...+.|....-. +.|.....++. ....| +.++ -.+-..|.|
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 00113688888888777788887554 56666666663 11111 1111 234457899
Q ss_pred ecCCCEEEEEEcCCCeEEEEecC--CCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEE--EEEEecCCC
Q psy5806 1188 DFKQRRLFWADSTNKRIEYCDFF--GRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSV--VIAREKSDT 1259 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~~~I~~~d~d--G~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V--~~~~~~~g~ 1259 (1332)
+++++.||.++.+.+.|..+..+ |...+.+.. +..|....+ +..+++|+.++..++.| +++++.+|
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i-----~~~g~~Liaa~q~sd~i~vf~~d~~TG- 325 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNI-----NPSGRFLIAANQKSDNITVFERDKETG- 325 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcccee-----CCCCCEEEEEccCCCcEEEEEEcCCCc-
Confidence 99999999999999998876664 544443332 666998888 66789999999877655 77888887
Q ss_pred CcceEEEEecC--CCCeeeEE
Q psy5806 1260 GQWDVHLIRSN--QEDFLNIK 1278 (1332)
Q Consensus 1260 ~~~~~~~~~~~--~~~~~~i~ 1278 (1332)
..+.+... ++.|+-|+
T Consensus 326 ---~L~~~~~~~~~p~Pvcv~ 343 (346)
T COG2706 326 ---RLTLLGRYAVVPEPVCVK 343 (346)
T ss_pred ---eEEecccccCCCCcEEEE
Confidence 45555443 34455554
No 27
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.89 E-value=2.8e-07 Score=101.77 Aligned_cols=201 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred cccCCcc-ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe
Q psy5806 1039 LPFPEYM-SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR 1117 (1332)
Q Consensus 1039 ~pi~~~~-~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ 1117 (1332)
.|++++. ++.||+|++.+++||.+.-..+.|+.++++ |.-...+-..+.+.++||++- .++.+.+++...+++.++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEE
Confidence 4566654 589999999999999998888999999976 766666666778899999996 3344444676678888888
Q ss_pred eC--Cce---EE--EEe-----cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec--CCCceEEEEe-------
Q psy5806 1118 SD--GQH---KK--ILV-----NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL--DGSYRTVLVE------- 1176 (1332)
Q Consensus 1118 ld--G~~---~~--~~~-----~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l--dG~~~~~l~~------- 1176 (1332)
++ +.. .. .+. .+....-|||.||.++.||.+-... ...|+.++. .+....+...
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-----P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-----PKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-----SEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-----ChhhEEEccccCccceeecccccccccc
Confidence 73 221 11 111 1222368999999999999996544 346888876 3333332221
Q ss_pred cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE-e---------ecccceEEEecCCccccccEEEEEECC
Q psy5806 1177 EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI-S---------KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1177 ~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~-~---------~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
..+..|.+|++|+..+.||+-...+.+|..+|.+|..+..+. . ...|.|||+ +.+|.||+...
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~------d~~G~LYIvsE- 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAF------DPDGNLYIVSE- 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-------TT--EEEEET-
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEE------CCCCCEEEEcC-
Confidence 124569999999999999999999999999999998544332 1 357999999 56889999985
Q ss_pred CCEEEEE
Q psy5806 1247 AMSVVIA 1253 (1332)
Q Consensus 1247 ~~~V~~~ 1253 (1332)
-+..+++
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5566654
No 28
>KOG4499|consensus
Probab=98.87 E-value=1.1e-07 Score=98.82 Aligned_cols=210 Identities=14% Similarity=0.218 Sum_probs=131.3
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc--eeeEEEecC-CeEEEEcCCCceEEEEeeCCceEE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR--DNFVIDWVA-NNIYYIDSQMHTINVARSDGQHKK 1124 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p--~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~~~ 1124 (1332)
.+..|+...+.|||+|+..+.|.|.+... ... ....+..| .|.++=-.+ -..|..--+ .+.-+.++||....
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~q-n~v---~ra~ie~p~~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~ 92 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQ-NKV---YRAKIEGPPSAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSES 92 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhh-hhe---EEEEEecCcceeEEEEecCCCceEEEeec-ceEEEEEcccccce
Confidence 46678889999999999998888766542 111 11111111 222222111 122322222 23445666655322
Q ss_pred E--Eec--------CCCCceEEEEcCCCcEEEEEecCCCC--CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCC
Q psy5806 1125 I--LVN--------DLMEPLAIAVYPRRGLLFYSHWGLYD--NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1125 ~--~~~--------~~~~P~~iavdp~~g~Lywtd~~~~~--~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~ 1192 (1332)
+ ..+ ..++-..=-||| +|+.|.--...+. =.+.+-.-++.+.|.....+.. .+.-||||+.|.+.+
T Consensus 93 a~v~~t~~ev~~d~kknR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~-~v~IsNgl~Wd~d~K 170 (310)
T KOG4499|consen 93 AKVYRTLFEVQPDRKKNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN-CVGISNGLAWDSDAK 170 (310)
T ss_pred eeeeeeccccCchHHhcccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCceeeeh-hccCCccccccccCc
Confidence 2 111 123445667899 5665654322211 0112223444555656655554 688999999999999
Q ss_pred EEEEEEcCCCeEEEEecC---C--CceEEEEe--------ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1193 RLFWADSTNKRIEYCDFF---G--RSRKIVIS--------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d~d---G--~~~~~~~~--------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
+.|++|+.+..|...|+| | ++|+++.. ..-|.||++ |.+|+||+|-|+.++|+++|+.+|
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I------D~eG~L~Va~~ng~~V~~~dp~tG- 243 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI------DTEGNLYVATFNGGTVQKVDPTTG- 243 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE------ccCCcEEEEEecCcEEEEECCCCC-
Confidence 999999999999888876 3 26888775 456899999 679999999999999999999999
Q ss_pred CcceEEEEecCCCC
Q psy5806 1260 GQWDVHLIRSNQED 1273 (1332)
Q Consensus 1260 ~~~~~~~~~~~~~~ 1273 (1332)
+-...+.--+++
T Consensus 244 --K~L~eiklPt~q 255 (310)
T KOG4499|consen 244 --KILLEIKLPTPQ 255 (310)
T ss_pred --cEEEEEEcCCCc
Confidence 655544433433
No 29
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.86 E-value=4.8e-09 Score=81.94 Aligned_cols=42 Identities=43% Similarity=0.888 Sum_probs=39.6
Q ss_pred CeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEec
Q psy5806 565 GIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDL 606 (1332)
Q Consensus 565 G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~ 606 (1332)
|+|||||++..++|++++|||+++++++.+++.+|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 689999999767999999999999999999999999999985
No 30
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.84 E-value=2.9e-06 Score=97.76 Aligned_cols=215 Identities=9% Similarity=0.007 Sum_probs=147.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..+++++.++.+|.+....+.|..+++.++.....+ .....|.++++++.++.|+++......+..++........
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI--PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 35678899999999998877789999997643221111 1123589999998788887776655556666766433222
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe-------cCCCCcceEEEecCCCEEEEE
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE-------EDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~-------~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
+..+ ..|..++++|...+||++.... +.|...++........+. ..-..|.+++++++++.+|++
T Consensus 152 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~------~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 152 NVLVD-QRPRFAEFTADGKELWVSSEIG------GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEcC-CCccEEEECCCCCEEEEEcCCC------CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 3222 4789999999777787764333 567777776543222111 012357789999999999999
Q ss_pred EcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeee
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLN 1276 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~ 1276 (1332)
....++|...|.........+. ...|.+|++ .+.+.+||.+....+.|..++..++ ..+..+..+ ..|.+
T Consensus 225 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~g~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~~-~~~~~ 295 (300)
T TIGR03866 225 LGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF-----TPDEKYLLTTNGVSNDVSVIDVAAL---KVIKSIKVG-RLPWG 295 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEeCCCcceEEE-----CCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEEcc-cccce
Confidence 8888899998886443332233 567889988 5567789998888999999999988 666666544 66777
Q ss_pred EE
Q psy5806 1277 IK 1278 (1332)
Q Consensus 1277 i~ 1278 (1332)
|+
T Consensus 296 ~~ 297 (300)
T TIGR03866 296 VV 297 (300)
T ss_pred eE
Confidence 75
No 31
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.79 E-value=1.1e-06 Score=101.70 Aligned_cols=221 Identities=14% Similarity=0.049 Sum_probs=146.3
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeC---------CCCeEEEEECCCCCCceeEeec------CC
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADM---------RSGNLRTFDMSDSTRIKPIPLM------ND 1088 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~---------~~~~I~~~~l~~g~~~~~i~~~------~~ 1088 (1332)
|.-|+.+ ...++..|+....|.++ +++.++.||+++. ..+.|..+++.++.....+..- ..
T Consensus 29 v~ViD~~---~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 29 VYTIDGE---AGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred EEEEECC---CCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 4444443 34444445555667776 9999999999999 8899999997755444334321 12
Q ss_pred CCceeeEEEecCCeEEEEcCC-CceEEEEeeCCc-eEEEEe---------------------------------------
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ-MHTINVARSDGQ-HKKILV--------------------------------------- 1127 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~-~~~I~v~~ldG~-~~~~~~--------------------------------------- 1127 (1332)
..|..+++...++.||+++.. .+.+.++|+... ....+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 245599999999999999977 777888877532 111010
Q ss_pred ----cC-----CCCceEEEEcC-CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE-----ecCC----CCcce---E
Q psy5806 1128 ----ND-----LMEPLAIAVYP-RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV-----EEDL----AFPNE---L 1185 (1332)
Q Consensus 1128 ----~~-----~~~P~~iavdp-~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~-----~~~l----~~p~g---l 1185 (1332)
.. +.+| ++.+ .+.+||.+.. +.|+.+++.+....... .... -.|.| +
T Consensus 185 ~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 185 TEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred eeeecCCccccccCC---ceEcCCCcEEEEecC--------CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 00 0223 2233 2334444443 35999988776533321 1110 14566 9
Q ss_pred EEecCCCEEEEE-EcC--------CCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc-EEEEEECCCCEEEEEE
Q psy5806 1186 AIDFKQRRLFWA-DST--------NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV-ELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1186 aiD~~~~~LY~~-d~~--------~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~-~lYwtd~~~~~V~~~~ 1254 (1332)
++.+++++||++ ..+ .+.|+.+|.....+...+. +..|.+|++ ++++. .||.+++.++.|..+|
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iav-----S~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINV-----SQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEE-----CCCCCeEEEEeCCCCCcEEEEE
Confidence 999999999995 322 3689999986655555555 889999999 56677 9999999999999999
Q ss_pred ecCCCCcceEEEE
Q psy5806 1255 EKSDTGQWDVHLI 1267 (1332)
Q Consensus 1255 ~~~g~~~~~~~~~ 1267 (1332)
..++ +.+..+
T Consensus 329 ~~t~---k~i~~i 338 (352)
T TIGR02658 329 AETG---KELSSV 338 (352)
T ss_pred CcCC---eEEeee
Confidence 8888 555444
No 32
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.1e-07 Score=103.20 Aligned_cols=198 Identities=18% Similarity=0.174 Sum_probs=139.5
Q ss_pred EEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEe-
Q psy5806 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFW- 821 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~- 821 (1332)
+-.|++..+.|||+|...+.|.|.++.....+++.. .-..+.++.+| ..++|..++.+...+.. -.|..++.+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeec-CCCeEEEEccccEEEec--cCCceeEEeccc
Confidence 445888999999999999999999987444444433 33447888888 56668888776655555 23444233321
Q ss_pred ---cCCCCCeEEEEeCCCCeEEEEecc-----cCc-CCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeC
Q psy5806 822 ---LNLYRPRSIVVHYGLGLMVWADWS-----RTR-LTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 822 ---~~~~~P~~Iavdp~~g~lywtd~g-----~~~-~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
..+.+|..+.++|. |.+|+++.+ ... ...++++|...+|...+.+...+..||||++++++ +.||++|.
T Consensus 105 ~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg-~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDG-KTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCC-CEEEEEeC
Confidence 12367999999998 999999877 210 12357888887776655555559999999999999 99999999
Q ss_pred CCCeEEEEccC---CC--cee-EEec--cCCcceEEEEeCCEEEE--EeCCCCEEEEEECCCCeE
Q psy5806 893 SKHTIEYKTLA---TG--RAK-RAYA--VQSHPYTLTVLDYYVYW--TDVQHSKIYRANKYDVKD 947 (1332)
Q Consensus 893 ~~~~I~~~~~d---G~--~~~-~l~~--~~~~P~~la~~~~~iyw--tD~~~~~i~~~~~~~g~~ 947 (1332)
...+|++++++ |. ++. .+.. .-..|-|++++.+-.|| +-|....|.+.++. |+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 99999999987 32 222 1211 33678999999554445 44555588888877 633
No 33
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=9.5e-06 Score=90.44 Aligned_cols=280 Identities=13% Similarity=0.138 Sum_probs=175.5
Q ss_pred CeEEEEeCC---CCeEEEEeCCCCceEE---EEecCCCCCeEEEEeCCCCeEEEEecc-cCcCCCCceEEEecCCC-CcE
Q psy5806 794 RKIYWTDMN---AQTIMVSDIDGKNAKV---LFWLNLYRPRSIVVHYGLGLMVWADWS-RTRLTNNRIEMAHMDGT-NRA 865 (1332)
Q Consensus 794 ~nLYwtD~~---~~~I~v~~ldG~~~~~---l~~~~~~~P~~Iavdp~~g~lywtd~g-~~~~~~~~I~r~~~dG~-~~~ 865 (1332)
.++|+.... .+.|.+.++|++..+. .....+.+|.-|+++|.+..||....- .. ..|.....|+. ++.
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~----ggvaay~iD~~~G~L 78 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEE----GGVAAYRIDPDDGRL 78 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCc----CcEEEEEEcCCCCeE
Confidence 357776555 6789999998543322 233467899999999999999998754 23 57888888865 666
Q ss_pred EEecc----cccCceeEEeCCCCCeEEEEeCCCCeEEEEcc--CCCceeE---Eec---------cC--CcceEEEEeCC
Q psy5806 866 VFETE----VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL--ATGRAKR---AYA---------VQ--SHPYTLTVLDY 925 (1332)
Q Consensus 866 ~l~~~----l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~--dG~~~~~---l~~---------~~--~~P~~la~~~~ 925 (1332)
.+.+. ...|.-+++|.++ +.||.+..+.++|...-+ +|.-... +.- .- .|+..++..+.
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred EEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 77654 4456899999999 999999999999887766 4543222 111 12 34455666788
Q ss_pred EEEEEeCCCCEEEEEECCCCeEE---EeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEcc
Q psy5806 926 YVYWTDVQHSKIYRANKYDVKDI---VEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002 (1332)
Q Consensus 926 ~iywtD~~~~~i~~~~~~~g~~i---~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~ 1002 (1332)
+|...|....+|+-.+...|..- ...++ .+ .| |.++.+..
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~------------~G---------~G----------------PRHi~FHp 200 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVK------------PG---------AG----------------PRHIVFHP 200 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccC------------CC---------CC----------------cceEEEcC
Confidence 99999999999987766655100 00000 00 01 11222222
Q ss_pred CCccccc---cCcceEEEEeec---c--eEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEEC
Q psy5806 1003 DRRSCFS---RTREFLLYTSRF---G--VIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM 1074 (1332)
Q Consensus 1003 d~~tC~~---~p~~~ll~~~~~---~--~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l 1074 (1332)
+++-+.- ......++...+ . .+..++.-+.+ +++-....+|-.++.++.||.+|...+.|..+.+
T Consensus 201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2111100 001111111111 1 01222221111 3455567888899999999999988888766655
Q ss_pred CCCCCceeEe-e--cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1075 SDSTRIKPIP-L--MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1075 ~~g~~~~~i~-~--~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
+.-++...++ . +....|.++.++.-++.|+++....+.|.++..|.+.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 5333332222 1 2333599999999999999999999999999998654
No 34
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.75 E-value=1.6e-05 Score=92.21 Aligned_cols=290 Identities=12% Similarity=0.076 Sum_probs=163.1
Q ss_pred CCCeEEEEeCC----CCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEE
Q psy5806 792 IGRKIYWTDMN----AQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF 867 (1332)
Q Consensus 792 ~~~nLYwtD~~----~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l 867 (1332)
.++++|++|.. .++|.|.+.+.....-.+..+ ..|+++ +.|..++||+++..-. |+-| |.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~-----R~~~----G~----- 74 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYS-----RIAR----GK----- 74 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEecccc-----cccc----CC-----
Confidence 56789999987 488999998765444344444 679997 9999889999985432 2211 11
Q ss_pred ecccccCceeEEeCCCCCeEEEEeCCCCeE-EEEccCCCceeEEeccCCcceEEEEeCCEEEEEeCC-CCEEEEEECCCC
Q psy5806 868 ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI-EYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQ-HSKIYRANKYDV 945 (1332)
Q Consensus 868 ~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I-~~~~~dG~~~~~l~~~~~~P~~la~~~~~iywtD~~-~~~i~~~~~~~g 945 (1332)
.. ..|=+.|..+.++ ..+.+ |...+.......+-++|+-++.+||..++. ..+|-.+|..++
T Consensus 75 --------------~~-d~V~v~D~~t~~~~~~i~~-p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 75 --------------RT-DYVEVIDPQTHLPIADIEL-PEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred --------------CC-CEEEEEECccCcEEeEEcc-CCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 11 2333333333222 22222 122111111223345555567799999987 888888888777
Q ss_pred eEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEc----cCCccccccCcceEEEEeec
Q psy5806 946 KDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLS----ADRRSCFSRTREFLLYTSRF 1021 (1332)
Q Consensus 946 ~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~----~d~~tC~~~p~~~ll~~~~~ 1021 (1332)
+++.. +. . ++|.++=.....++.=.|++|-.+. .+++ .. ....
T Consensus 139 kvv~e---------i~----v----------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---------~~-~~~~ 185 (352)
T TIGR02658 139 AFVRM---------MD----V----------PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---------PK-IKPT 185 (352)
T ss_pred cEEEE---------Ee----C----------CCCcEEEEecCCccEEEeecCceEEEEecCCCc---------eE-Eeee
Confidence 55442 10 0 3455554443444555566664331 2221 00 1000
Q ss_pred ceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee--Ee---ecC----CCCce
Q psy5806 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP--IP---LMN----DTIRD 1092 (1332)
Q Consensus 1022 ~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~--i~---~~~----~~~p~ 1092 (1332)
. + +..+ .. +-..+| .|.+.+++.+|+... |+|+.+++. +..... .+ ... .-.|.
T Consensus 186 ~-v--f~~~----~~-----~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~-~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 186 E-V--FHPE----DE-----YLINHP---AYSNKSGRLVWPTYT-GKIFQIDLS-SGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred e-e--ecCC----cc-----ccccCC---ceEcCCCcEEEEecC-CeEEEEecC-CCcceecceeeeccccccccccCCC
Confidence 1 0 1100 00 111223 445544566666545 999999965 322211 11 111 12566
Q ss_pred e---eEEEecCCeEEEEc-CC--------CceEEEEeeCCceEEE-EecCCCCceEEEEcCCCc-EEEEEecCCCCCCCC
Q psy5806 1093 N---FVIDWVANNIYYID-SQ--------MHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRG-LLFYSHWGLYDNSPT 1158 (1332)
Q Consensus 1093 g---lAvDw~~~~LY~td-~~--------~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g-~Lywtd~~~~~~~~~ 1158 (1332)
| +|++..+++||++. .. .+.|.++|.....+.. +..+ ..|.+|+++|... +||.++...
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS~Dgkp~lyvtn~~s------ 321 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVSQDAKPLLYALSTGD------ 321 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEECCCCCeEEEEeCCCC------
Confidence 6 99999999999953 22 2578888887444333 5445 6899999999888 899998765
Q ss_pred CcEEEEecCCCc
Q psy5806 1159 TKIEKVYLDGSY 1170 (1332)
Q Consensus 1159 ~~I~r~~ldG~~ 1170 (1332)
+.|..++.....
T Consensus 322 ~~VsViD~~t~k 333 (352)
T TIGR02658 322 KTLYIFDAETGK 333 (352)
T ss_pred CcEEEEECcCCe
Confidence 558877765443
No 35
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.74 E-value=7.7e-09 Score=105.04 Aligned_cols=78 Identities=31% Similarity=0.501 Sum_probs=64.2
Q ss_pred CCCCceecCCCCce-EeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC----CEEEeeeecCCCCC---CCC
Q psy5806 15 EIPQYKKCNRTGAC-IPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG----HCILKTWLCDGIPD---CSL 86 (1332)
Q Consensus 15 c~~~~f~C~~~~~C-i~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~D 86 (1332)
-.++.|+|.++..= ||.++++|+.-||+|||||.+ +..|+.+.|.|.|. .-||..++-||.-| |=|
T Consensus 33 ~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG------TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCD 106 (176)
T PF12999_consen 33 SENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG------TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCD 106 (176)
T ss_pred CCCCceEecCCCCceecHHHccCcceeCCCCCCccc------cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCC
Confidence 35678999855555 999999999999999999954 45788889999974 58999999999999 999
Q ss_pred CCCcc--cccccCC
Q psy5806 87 GEDER--NCNKTCD 98 (1332)
Q Consensus 87 gsDE~--~C~~~C~ 98 (1332)
||||. .|+++|.
T Consensus 107 GSDE~~~~C~N~C~ 120 (176)
T PF12999_consen 107 GSDESGGKCPNTCA 120 (176)
T ss_pred CCCCCCCCCccHHH
Confidence 99992 2554443
No 36
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.73 E-value=1.2e-06 Score=102.75 Aligned_cols=232 Identities=17% Similarity=0.124 Sum_probs=143.4
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee------cCCCCceeeEEEe---cCCeEEEEcCCC----
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL------MNDTIRDNFVIDW---VANNIYYIDSQM---- 1110 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~------~~~~~p~glAvDw---~~~~LY~td~~~---- 1110 (1332)
+.+|.+|++.++ ++||+++. .|+|++++ .+|+....+.. .+...+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 357899999998 68999986 99999999 43554222221 2344678999997 358899976532
Q ss_pred ----ceEEEEeeCCc-----eEEEEe----c---CCCCceEEEEcCCCcEEEEEecCCCC-------CCCCCcEEEEecC
Q psy5806 1111 ----HTINVARSDGQ-----HKKILV----N---DLMEPLAIAVYPRRGLLFYSHWGLYD-------NSPTTKIEKVYLD 1167 (1332)
Q Consensus 1111 ----~~I~v~~ldG~-----~~~~~~----~---~~~~P~~iavdp~~g~Lywtd~~~~~-------~~~~~~I~r~~ld 1167 (1332)
.+|.++.++.. ..+++. . ....-..|+++| .|+||++--...+ ....++|.|++.|
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence 46666666533 122221 1 223457799999 7899999522211 2346889999999
Q ss_pred CCc------------eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec--CCCc-----eE-------------
Q psy5806 1168 GSY------------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF--FGRS-----RK------------- 1215 (1332)
Q Consensus 1168 G~~------------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~--dG~~-----~~------------- 1215 (1332)
|+. ...++..++..|.+|++|+.+++||.+|.+.+..+.++. .|.+ ..
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 972 234566789999999999998999999987554443332 2331 00
Q ss_pred --------EEEe---ecccceEEEe-cCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCC-CeeeEEE
Q psy5806 1216 --------IVIS---KVAPYGLSVR-QSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQE-DFLNIKA 1279 (1332)
Q Consensus 1216 --------~~~~---~~~P~glav~-~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~-~~~~i~~ 1279 (1332)
.+.. ...|.|+++. ++.-..+.+.++++++..++|+++...++......+.+..... .+.+|.+
T Consensus 237 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 237 PSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp SS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 1111 4578899882 1111245889999999999999999976521222333444444 5667653
No 37
>KOG1520|consensus
Probab=98.71 E-value=2.1e-07 Score=105.22 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCc-------eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEec-
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRI-------KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN- 1128 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~-------~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~- 1128 (1332)
+.|+|+-...|.+-+++....+.. ..-...-.++|-|||++..+++||+||...+ +.+++..|...+.+..
T Consensus 76 ~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~ 154 (376)
T KOG1520|consen 76 RILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADE 154 (376)
T ss_pred ceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceecccc
Confidence 456888767777777664211111 1111123579999999999999999998775 4456777665444322
Q ss_pred ----CCCCceEEEEcCCCcEEEEEecCCC-C----------CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1129 ----DLMEPLAIAVYPRRGLLFYSHWGLY-D----------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1129 ----~~~~P~~iavdp~~g~Lywtd~~~~-~----------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
.+....++.|++ +|.+||||.... + ..+.+|++|.+..-+..++|.. ++..|||+++.+++..
T Consensus 155 ~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld-~L~F~NGlaLS~d~sf 232 (376)
T KOG1520|consen 155 AEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLD-GLYFPNGLALSPDGSF 232 (376)
T ss_pred ccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhh-cccccccccCCCCCCE
Confidence 233467899999 999999996541 1 2356788888887777777776 7999999999999999
Q ss_pred EEEEEcCCCeEEEEecCCCce---EEEEe--ecccceEEEecCCccccccEEEEEE
Q psy5806 1194 LFWADSTNKRIEYCDFFGRSR---KIVIS--KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~~~---~~~~~--~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
+.+++....+|.++-+.|... ++++. ...|+.|.. +..|.+|++-
T Consensus 233 vl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~------~~~G~fWVal 282 (376)
T KOG1520|consen 233 VLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRR------DSTGHFWVAL 282 (376)
T ss_pred EEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeE------CCCCCEEEEE
Confidence 999999999999999998765 77776 788999988 4566666666
No 38
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.71 E-value=8.8e-07 Score=105.57 Aligned_cols=207 Identities=14% Similarity=0.193 Sum_probs=137.8
Q ss_pred CCccceEEEEEeCCCcEEEEEeC-----------CCC-eEEEEECCCCCCc---eeEeecCCCCceeeEEEecCCeEEEE
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADM-----------RSG-NLRTFDMSDSTRI---KPIPLMNDTIRDNFVIDWVANNIYYI 1106 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~-----------~~~-~I~~~~l~~g~~~---~~i~~~~~~~p~glAvDw~~~~LY~t 1106 (1332)
|.+.+|.+|++|+. ++||+++. ..+ +|.++.-.++.+. .+++..++..|.||++.. ++ ||++
T Consensus 11 p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~ 87 (367)
T TIGR02604 11 PLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA 87 (367)
T ss_pred CccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe
Confidence 34678999999987 56999984 223 8888875444433 345557888999999984 34 9999
Q ss_pred cCCCceEEEE-eeCCc-----eEEEEecCC--------CCceEEEEcCCCcEEEEEecCCCC-------------CCCCC
Q psy5806 1107 DSQMHTINVA-RSDGQ-----HKKILVNDL--------MEPLAIAVYPRRGLLFYSHWGLYD-------------NSPTT 1159 (1332)
Q Consensus 1107 d~~~~~I~v~-~ldG~-----~~~~~~~~~--------~~P~~iavdp~~g~Lywtd~~~~~-------------~~~~~ 1159 (1332)
+.. .|..+ +.+|. .++++.+++ ..|.+|+++| .|+||++...... ....+
T Consensus 88 ~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 88 TPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred CCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence 743 45544 44431 233333322 2378999999 7999998753100 01125
Q ss_pred cEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC--CC-------------------ceEE--
Q psy5806 1160 KIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF--GR-------------------SRKI-- 1216 (1332)
Q Consensus 1160 ~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d--G~-------------------~~~~-- 1216 (1332)
.|+|++.+|+..+++ ..++..|+||++|+ .+.||++|.......++..- |. ....
T Consensus 165 ~i~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 242 (367)
T TIGR02604 165 GLFRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPT 242 (367)
T ss_pred eEEEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccc
Confidence 799999999887654 56789999999997 57889998865555544321 10 0000
Q ss_pred -------------EEe---ecccceEEEecCC--ccccccEEEEEECCCCEEEEEEec
Q psy5806 1217 -------------VIS---KVAPYGLSVRQSP--GKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1217 -------------~~~---~~~P~glav~~~~--~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
... ...|.|+++...+ .+.+++.|++++|..+.|.++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~ 300 (367)
T TIGR02604 243 GEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLE 300 (367)
T ss_pred cccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEee
Confidence 001 2368899983221 124678999999999999999875
No 39
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.64 E-value=1.7e-08 Score=74.26 Aligned_cols=33 Identities=42% Similarity=0.911 Sum_probs=30.8
Q ss_pred CCCCCceecCCCCceEeCCcCcCCCCCCCCCCCC
Q psy5806 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDE 47 (1332)
Q Consensus 14 ~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE 47 (1332)
.|.+.+|+|. ++.|||..|+|||..||.|||||
T Consensus 1 ~C~~~~f~C~-~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 1 TCPPGEFQCD-NGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCCeEECC-CCCEECchhhCCCcCcCcCCCCC
Confidence 4777899998 88999999999999999999998
No 40
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.60 E-value=2.5e-08 Score=73.38 Aligned_cols=32 Identities=53% Similarity=1.322 Sum_probs=30.2
Q ss_pred CCCCCEEecCCCEEEeeeecCCCCCCCCCCCc
Q psy5806 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDE 90 (1332)
Q Consensus 59 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE 90 (1332)
|.+.+|+|.++.||+..++|||..||+|||||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 66679999999999999999999999999998
No 41
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.56 E-value=1.3e-06 Score=104.22 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=110.9
Q ss_pred CCCceeeEEEecCCeEEEEcCC------------CceEEEEee---CCce--EEEEecCCCCceEEEEcCCCcEEEEEec
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQ------------MHTINVARS---DGQH--KKILVNDLMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~------------~~~I~v~~l---dG~~--~~~~~~~~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
+..|.+||+|. .++||+++.. .++|.+++- ||.. .+++..++..|.+|++.+ .| ||+++.
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP 89 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC
Confidence 78999999995 5779999742 237777654 4654 344777889999999998 66 999974
Q ss_pred CCCCCCCCCcEEEE-ecCCC-----ceEEEEec---C----CCCcceEEEecCCCEEEEEEcC-----------------
Q psy5806 1151 GLYDNSPTTKIEKV-YLDGS-----YRTVLVEE---D----LAFPNELAIDFKQRRLFWADST----------------- 1200 (1332)
Q Consensus 1151 ~~~~~~~~~~I~r~-~ldG~-----~~~~l~~~---~----l~~p~glaiD~~~~~LY~~d~~----------------- 1200 (1332)
+.|.|. +.+|. .+++|+.. . ...+++|+++++ ++||+++..
T Consensus 90 --------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD-G~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 90 --------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD-GWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred --------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC-CCEEEecccCCCceeccCCCccCccc
Confidence 358888 44442 34445431 1 234889999975 689998773
Q ss_pred --CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1201 --NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1201 --~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
.+.|.+++.+|+..+++.. ..+|.||++ +..+.||++|...+...+++.
T Consensus 161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~------d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSV------DSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred ccCceEEEEecCCCeEEEEecCcCCCccceE------CCCCCEEEEccCCCceeEEcc
Confidence 1579999999998887777 899999999 457889999987766666653
No 42
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.50 E-value=0.001 Score=79.09 Aligned_cols=331 Identities=14% Similarity=0.095 Sum_probs=178.2
Q ss_pred CeEEEEecccCcCCCCceEEEecCCCCcEEEe---cccccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEecc
Q psy5806 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE---TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAV 913 (1332)
Q Consensus 837 g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~---~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~~~ 913 (1332)
..+|+++.+.+ ++. -+|+...+++. .....+.++++..++ +.+|++.. .+.|..+|+.-...-.-...
T Consensus 6 ~l~~V~~~~~~-----~v~--viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~r-dg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSG-----SVA--VIDGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANR-DGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGT-----EEE--EEETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEET-TSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCC-----EEE--EEECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcC-CCeEEEEECCcccEEEEEec
Confidence 35667776655 444 45555444332 222235667778878 88999975 58999999865443222245
Q ss_pred CCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCcc
Q psy5806 914 QSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFT 991 (1332)
Q Consensus 914 ~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~ 991 (1332)
...|.++++. +.++|.+.+..+.+..++..+.+.++
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~------------------------------------------ 114 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK------------------------------------------ 114 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE------------------------------------------
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee------------------------------------------
Confidence 6788888885 67999998888877655543332221
Q ss_pred ccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEE
Q psy5806 992 CACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRT 1071 (1332)
Q Consensus 992 C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~ 1071 (1332)
.|......... + -..+.+|-..+.+...+++-...+.|..
T Consensus 115 ----------------------------------~I~~~~~~~~~-----~-~~Rv~aIv~s~~~~~fVv~lkd~~~I~v 154 (369)
T PF02239_consen 115 ----------------------------------TIPTGGMPVDG-----P-ESRVAAIVASPGRPEFVVNLKDTGEIWV 154 (369)
T ss_dssp ----------------------------------EEE--EE-TTT-----S----EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred ----------------------------------ecccccccccc-----c-CCCceeEEecCCCCEEEEEEccCCeEEE
Confidence 11110000000 0 0012333333333333344445677777
Q ss_pred EECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCc----eEEEEcCCCcEEE
Q psy5806 1072 FDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEP----LAIAVYPRRGLLF 1146 (1332)
Q Consensus 1072 ~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P----~~iavdp~~g~Ly 1146 (1332)
++..+.....+........|++..+|+.++.+|++....+.|.++++....... +..+ ..| .+--++|..|.+
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g-~~p~~~~~~~~php~~g~v- 232 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG-KKPHPGPGANFPHPGFGPV- 232 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S-SSBEETTEEEEEETTTEEE-
T ss_pred EEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc-ccccccccccccCCCcceE-
Confidence 775544333222222345799999999999999988888899999988554444 4332 232 333488977765
Q ss_pred EEecCCCCCCCCCcEEEEecCC------CceEEE--EecCCCCcceEEEecCCCEEEEE---EcCCCeEEEEecCCCceE
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDG------SYRTVL--VEEDLAFPNELAIDFKQRRLFWA---DSTNKRIEYCDFFGRSRK 1215 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG------~~~~~l--~~~~l~~p~glaiD~~~~~LY~~---d~~~~~I~~~d~dG~~~~ 1215 (1332)
|+..+. ....|-.+..+- ...+++ +.. ...|..+...++++.||+. ....+.|..+|..-- +
T Consensus 233 w~~~~~----~~~~~~~ig~~~v~v~d~~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~ 305 (369)
T PF02239_consen 233 WATSGL----GYFAIPLIGTDPVSVHDDYAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--K 305 (369)
T ss_dssp EEEEBS----SSSEEEEEE--TTT-STTTBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--E
T ss_pred Eeeccc----cceecccccCCccccchhhcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc--c
Confidence 554332 012222222111 111111 222 2445667778888888876 456788999888644 3
Q ss_pred EEEe-----ecccceEEEecCCccccccEEEEEECCCC-EEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1216 IVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAM-SVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1216 ~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~-~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
++.. ...+..+.+ ..++.++|++.|..+ +|..+|..|. +....+. +..|.++
T Consensus 306 ~~~~i~~~~~~~~~h~ef-----~~dG~~v~vS~~~~~~~i~v~D~~Tl---~~~~~i~--~~tP~G~ 363 (369)
T PF02239_consen 306 VVKTITPGPGKRVVHMEF-----NPDGKEVWVSVWDGNGAIVVYDAKTL---KEKKRIP--VPTPTGK 363 (369)
T ss_dssp EEE-HHHHHT--EEEEEE------TTSSEEEEEEE--TTEEEEEETTTT---EEEEEEE----SEEEE
T ss_pred eeEEEeccCCCcEeccEE-----CCCCCEEEEEEecCCCEEEEEECCCc---EEEEEEE--eeCCCeE
Confidence 3333 334777777 667899999999988 9999999888 6666665 5666665
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.50 E-value=4.9e-05 Score=81.46 Aligned_cols=278 Identities=13% Similarity=0.078 Sum_probs=186.8
Q ss_pred cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe-ccCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEE
Q psy5806 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY-AVQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDI 948 (1332)
Q Consensus 871 l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~-~~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i 948 (1332)
...|-.++.+.++ .+++.++..+.|-..|......+++. ....+|++|.+. ++..+.+|... .|.|++..+.++-
T Consensus 61 G~ap~dvapapdG--~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt 137 (353)
T COG4257 61 GSAPFDVAPAPDG--AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT 137 (353)
T ss_pred CCCccccccCCCC--ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE
Confidence 4557778888776 89999999999999998766666554 378899999998 55777788777 9999988776444
Q ss_pred EeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEe
Q psy5806 949 VEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRIS 1028 (1332)
Q Consensus 949 ~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~ 1028 (1332)
+..++.+.. =. +-.+-+-++.-.|-|+.+.. +.. .
T Consensus 138 ~f~lp~~~a--------------~~-----------------------------nlet~vfD~~G~lWFt~q~G-~yG-r 172 (353)
T COG4257 138 RFPLPLEHA--------------DA-----------------------------NLETAVFDPWGNLWFTGQIG-AYG-R 172 (353)
T ss_pred EeecccccC--------------CC-----------------------------cccceeeCCCccEEEeeccc-cce-e
Confidence 433331100 00 00011112344566665555 444 4
Q ss_pred CCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee-cCC-CCceeeEEEecCCeEEEE
Q psy5806 1029 LDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL-MND-TIRDNFVIDWVANNIYYI 1106 (1332)
Q Consensus 1029 l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~-~~~-~~p~glAvDw~~~~LY~t 1106 (1332)
|++......+.|.+....|.||...++ +.||+++...+.|-+++...+ ..+++.. ..+ ..-..|-.|. -++++.+
T Consensus 173 LdPa~~~i~vfpaPqG~gpyGi~atpd-Gsvwyaslagnaiaridp~~~-~aev~p~P~~~~~gsRriwsdp-ig~~wit 249 (353)
T COG4257 173 LDPARNVISVFPAPQGGGPYGICATPD-GSVWYASLAGNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDP-IGRAWIT 249 (353)
T ss_pred cCcccCceeeeccCCCCCCcceEECCC-CcEEEEeccccceEEcccccC-CcceecCCCcccccccccccCc-cCcEEEe
Confidence 444433334566777778999999987 479999999999999986644 3333331 111 1234455664 3566677
Q ss_pred cCCCceEEEEeeCCce-EEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcce
Q psy5806 1107 DSQMHTINVARSDGQH-KKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNE 1184 (1332)
Q Consensus 1107 d~~~~~I~v~~ldG~~-~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~g 1184 (1332)
+....++..++..-.. ++- +-....+|+++-||- .|+++.+|++. +.|.|.+..-...+++-. .-..++-
T Consensus 250 twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~a------gai~rfdpeta~ftv~p~-pr~n~gn 321 (353)
T COG4257 250 TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADA------GAIGRFDPETARFTVLPI-PRPNSGN 321 (353)
T ss_pred ccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeecccc------CceeecCcccceEEEecC-CCCCCCc
Confidence 7777777777665332 322 444557899999997 89999999887 789999876655555543 3355667
Q ss_pred EEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
+.+|...++|+.++++.+.+.+.
T Consensus 322 ~ql~gr~ge~W~~e~gvd~lv~~ 344 (353)
T COG4257 322 IQLDGRPGELWFTEAGVDALVTT 344 (353)
T ss_pred eeccCCCCceeecccCcceeEEE
Confidence 89999999999999988877664
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.45 E-value=0.00013 Score=86.47 Aligned_cols=336 Identities=11% Similarity=0.051 Sum_probs=172.0
Q ss_pred ceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEE
Q psy5806 751 EYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSI 830 (1332)
Q Consensus 751 ~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~I 830 (1332)
+.+|+++...+.|..++.........+..+...+.++++...++.+|+++. .+.|.+.++......--+..+ ..|++|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceE
Confidence 455677888888877765543333334444333566788888999999976 468999999544322223334 469999
Q ss_pred EEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEe---cc-cc------cCceeEEeCCCCCeEEEEeCCCCeEEEE
Q psy5806 831 VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE---TE-VI------WPSCLAIDYSDNPKLYWVDTSKHTIEYK 900 (1332)
Q Consensus 831 avdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~---~~-l~------~P~gl~iD~~~~~~lYw~d~~~~~I~~~ 900 (1332)
++.+...++|.+++... .+. -+|+...+.+. .. .. .+.++.-.+.. ...+++-...+.|..+
T Consensus 84 ~~s~DG~~~~v~n~~~~-----~v~--v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPG-----TVS--VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EE--TTTEEEEEEEETT-----EEE--EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEE
T ss_pred EEcCCCCEEEEEecCCC-----cee--EeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEE
Confidence 99999889999987655 343 35554443332 11 11 12355444433 3333344567999999
Q ss_pred ccCCCceeE--EeccCCcceEEEEe--CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCC
Q psy5806 901 TLATGRAKR--AYAVQSHPYTLTVL--DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNN 976 (1332)
Q Consensus 901 ~~dG~~~~~--l~~~~~~P~~la~~--~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~n 976 (1332)
++....... .......|+...+. +.|++.+....+.|..++..+++.+.. ++.+- .|.. .+=.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-i~~g~-------~p~~--~~~~--- 222 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-IDTGK-------KPHP--GPGA--- 222 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-EE-SS-------SBEE--TTEE---
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-eeccc-------cccc--cccc---
Confidence 986543222 22234566666665 557888888888998888777743321 11000 0000 0000
Q ss_pred CCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCC
Q psy5806 977 GGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSK 1056 (1332)
Q Consensus 977 GgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~ 1056 (1332)
-++-|. +..-+..... ....+-....+. +++-+.....++..|+....+..+..+|+.
T Consensus 223 ------~~php~-----~g~vw~~~~~-------~~~~~~~ig~~~----v~v~d~~~wkvv~~I~~~G~glFi~thP~s 280 (369)
T PF02239_consen 223 ------NFPHPG-----FGPVWATSGL-------GYFAIPLIGTDP----VSVHDDYAWKVVKTIPTQGGGLFIKTHPDS 280 (369)
T ss_dssp ------EEEETT-----TEEEEEEEBS-------SSSEEEEEE--T----TT-STTTBTSEEEEEE-SSSS--EE--TT-
T ss_pred ------cccCCC-----cceEEeeccc-------cceecccccCCc----cccchhhcCeEEEEEECCCCcceeecCCCC
Confidence 000000 0000111100 011100111111 111122233445555555556888899999
Q ss_pred cEEEEE---eCCCCeEEEEECCCCCCceeEee--c-CCCCceeeEEEecCCeEEEEcCCCc-eEEEEeeCCce-EEEEec
Q psy5806 1057 NLIYFA---DMRSGNLRTFDMSDSTRIKPIPL--M-NDTIRDNFVIDWVANNIYYIDSQMH-TINVARSDGQH-KKILVN 1128 (1332)
Q Consensus 1057 ~~lY~s---d~~~~~I~~~~l~~g~~~~~i~~--~-~~~~p~glAvDw~~~~LY~td~~~~-~I~v~~ldG~~-~~~~~~ 1128 (1332)
++||+. +...+.|..++..+. +++.. . ....+..+.++..++.+|++....+ +|.++|..... ...+.
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~- 356 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP- 356 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred ccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE-
Confidence 999887 455688999996632 33221 1 1224889999999999999988877 99999887443 33354
Q ss_pred CCCCceEE
Q psy5806 1129 DLMEPLAI 1136 (1332)
Q Consensus 1129 ~~~~P~~i 1136 (1332)
+..|.|+
T Consensus 357 -~~tP~G~ 363 (369)
T PF02239_consen 357 -VPTPTGK 363 (369)
T ss_dssp ---SEEEE
T ss_pred -eeCCCeE
Confidence 6778875
No 45
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.44 E-value=1.8e-05 Score=92.77 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=137.5
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCccc-----ccCCccceEEEEEeC---CCcEEEEEeCCC--------CeEEEEECC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTL-----PFPEYMSSIFFDYHY---SKNLIYFADMRS--------GNLRTFDMS 1075 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~-----pi~~~~~~~~id~d~---~~~~lY~sd~~~--------~~I~~~~l~ 1075 (1332)
...++++.+...|+.+..+... ...+. ...+.....+|++++ .++.||++-... .+|.|+.++
T Consensus 12 dG~l~v~e~~G~i~~~~~~g~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~ 90 (331)
T PF07995_consen 12 DGRLLVAERSGRIWVVDKDGSL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLS 90 (331)
T ss_dssp TSCEEEEETTTEEEEEETTTEE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEE
T ss_pred CCcEEEEeCCceEEEEeCCCcC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEecc
Confidence 3455666654437777733222 11111 122345678999998 368899876532 468888876
Q ss_pred CC----CCceeEeec------CCCCceeeEEEecCCeEEEEcC-------------CCceEEEEeeCCc-----------
Q psy5806 1076 DS----TRIKPIPLM------NDTIRDNFVIDWVANNIYYIDS-------------QMHTINVARSDGQ----------- 1121 (1332)
Q Consensus 1076 ~g----~~~~~i~~~------~~~~p~glAvDw~~~~LY~td~-------------~~~~I~v~~ldG~----------- 1121 (1332)
.+ +..++++.. ......+|++++.+ .||++-. ..+.|..++.||+
T Consensus 91 ~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~ 169 (331)
T PF07995_consen 91 DGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDD 169 (331)
T ss_dssp TTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTST
T ss_pred CCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCC
Confidence 44 112333321 23355679999754 9999721 1457888888987
Q ss_pred --eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc---------------------------eE
Q psy5806 1122 --HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY---------------------------RT 1172 (1332)
Q Consensus 1122 --~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~---------------------------~~ 1172 (1332)
..++...++..|.++++||..|.||.+|.+.. ....|.++.- |.+ .-
T Consensus 170 ~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~---~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P 245 (331)
T PF07995_consen 170 GADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD---GWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPP 245 (331)
T ss_dssp TSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS---SSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---
T ss_pred CceEEEEEeCCCccccEEEECCCCcEEEEccCCC---CCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCcc
Confidence 34556679999999999998899999997751 1234555432 222 00
Q ss_pred EEEecCCCCcceEEEecC------CCEEEEEEcCCCeEEEEecCCCc----eEEEEe--ecccceEEEecCCccccccEE
Q psy5806 1173 VLVEEDLAFPNELAIDFK------QRRLFWADSTNKRIEYCDFFGRS----RKIVIS--KVAPYGLSVRQSPGKAFIVEL 1240 (1332)
Q Consensus 1173 ~l~~~~l~~p~glaiD~~------~~~LY~~d~~~~~I~~~d~dG~~----~~~~~~--~~~P~glav~~~~~~~~~~~l 1240 (1332)
++.-..-..|.|+++-.. .+.+++++...++|.++.++... .+.++. ...|.+|++ +.+|.|
T Consensus 246 ~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~------~pDG~L 319 (331)
T PF07995_consen 246 VFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ------GPDGAL 319 (331)
T ss_dssp SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE------ETTSEE
T ss_pred ceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE------cCCCeE
Confidence 000111145888887632 56799999999999999997332 222233 447999999 567999
Q ss_pred EEEECCCCEEEE
Q psy5806 1241 YWTDWEAMSVVI 1252 (1332)
Q Consensus 1241 Ywtd~~~~~V~~ 1252 (1332)
|+++-.+++|+|
T Consensus 320 yv~~d~~G~iyR 331 (331)
T PF07995_consen 320 YVSDDSDGKIYR 331 (331)
T ss_dssp EEEE-TTTTEEE
T ss_pred EEEECCCCeEeC
Confidence 999989999987
No 46
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.41 E-value=4.3e-05 Score=81.86 Aligned_cols=278 Identities=14% Similarity=0.155 Sum_probs=179.1
Q ss_pred cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCccccccCCCCcc
Q psy5806 913 VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFT 991 (1332)
Q Consensus 913 ~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCshlCl~~p~~~~ 991 (1332)
....|+.++.. ++.+++++..++.|-+.+..+|++.+--++ .+
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg------------~G------------------------ 103 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG------------SG------------------------ 103 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecC------------CC------------------------
Confidence 56788889988 567999999999999999999855432111 00
Q ss_pred ccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCC-ccceEEEEEeCCCcEEEEEeCCCCeEE
Q psy5806 992 CACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLR 1070 (1332)
Q Consensus 992 C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~-~~~~~~id~d~~~~~lY~sd~~~~~I~ 1070 (1332)
+-|+|.++..|+ ..++.-.. .. |+|++-+....+...+|... -.|.-...||.. +.|+|+.. .|.--
T Consensus 104 -a~Phgiv~gpdg-------~~Witd~~-~a-I~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~-G~lWFt~q-~G~yG 171 (353)
T COG4257 104 -ASPHGIVVGPDG-------SAWITDTG-LA-IGRLDPKTLEVTRFPLPLEHADANLETAVFDPW-GNLWFTGQ-IGAYG 171 (353)
T ss_pred -CCCceEEECCCC-------CeeEecCc-ce-eEEecCcccceEEeecccccCCCcccceeeCCC-ccEEEeec-cccce
Confidence 125666665554 23333222 26 88888765544433333221 123445567866 46888863 33333
Q ss_pred EEECCCCCCceeEeec-CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEe--cC-CCCceEEEEcCCCcEEE
Q psy5806 1071 TFDMSDSTRIKPIPLM-NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV--ND-LMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1071 ~~~l~~g~~~~~i~~~-~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~--~~-~~~P~~iavdp~~g~Ly 1146 (1332)
|++. .++.-.++.. ....|.||.+.+ .+.||++....+.|-.++.-....+++. +. ...-|.|-+|| .|+++
T Consensus 172 rLdP--a~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdp-ig~~w 247 (353)
T COG4257 172 RLDP--ARNVISVFPAPQGGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDP-IGRAW 247 (353)
T ss_pred ecCc--ccCceeeeccCCCCCCcceEECC-CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCc-cCcEE
Confidence 4442 2233333333 345899999995 6788888877777766655322344421 12 23457888999 89999
Q ss_pred EEecCCCCCCCCCcEEEEecCCCce-EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYR-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPY 1224 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~ 1224 (1332)
.|+|+. ++++|++..-..- +--+...-.+|..|-+| ..+|++.+|...+.|.++|..-..-+++-. ..++-
T Consensus 248 ittwg~------g~l~rfdPs~~sW~eypLPgs~arpys~rVD-~~grVW~sea~agai~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 248 ITTWGT------GSLHRFDPSVTSWIEYPLPGSKARPYSMRVD-RHGRVWLSEADAGAIGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred EeccCC------ceeeEeCcccccceeeeCCCCCCCcceeeec-cCCcEEeeccccCceeecCcccceEEEecCCCCCCC
Confidence 999987 8899998865542 22233334678899999 778999999999999998886544444333 56666
Q ss_pred eEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1225 GLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1225 glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
-+.+ +.-.+.|+++......+.+..
T Consensus 321 n~ql-----~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 321 NIQL-----DGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred ceec-----cCCCCceeecccCcceeEEEE
Confidence 6777 345678888888777766554
No 47
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.38 E-value=3.4e-07 Score=93.25 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=60.9
Q ss_pred CCCCEEecCCC-E-EEeeeecCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecC
Q psy5806 60 SPDEHRCTTGH-C-ILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137 (1332)
Q Consensus 60 ~~~~f~C~~g~-C-i~~~~~CDg~~DC~DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~ 137 (1332)
..+.|+|.+|. - |+..+++|++-||+|||||.+-. .|..+ .|+|.|... ...-|+
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTs-AC~~~-~FyC~N~g~---------------------~p~~i~ 90 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTS-ACSNG-KFYCENKGH---------------------IPRYIP 90 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCCCCCCccccc-cCcCc-eEeeccCCC---------------------CCceee
Confidence 44679999773 4 99999999999999999997632 27666 999998311 123678
Q ss_pred CccccCCCCC---CCCCCCCCCCcCCc
Q psy5806 138 KKYLCDGKKH---CPRGEEGPDERHCP 161 (1332)
Q Consensus 138 ~~~~Cdg~~d---C~dg~de~d~~~C~ 161 (1332)
..+|=||+.| |-||||| ....|.
T Consensus 91 ~s~VnDGICDy~~CCDGSDE-~~~~C~ 116 (176)
T PF12999_consen 91 SSRVNDGICDYDICCDGSDE-SGGKCP 116 (176)
T ss_pred hhhhcCCcCcccccCCCCCC-CCCCCc
Confidence 8889999999 9999999 334565
No 48
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=4.3e-05 Score=83.32 Aligned_cols=196 Identities=14% Similarity=0.094 Sum_probs=140.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEE-EcCCCceEEEEeeCCceE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYY-IDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~-td~~~~~I~v~~ldG~~~ 1123 (1332)
.+..++.|++..+.||-+--....|..++++ |.-..++-..+...|++|++= +++.|+ +|....++.++.++-...
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYI--GGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEe--cCCEEEEEehhcceEEEEEEcCCcc
Confidence 3578999999999999887666789889877 877788877889999999876 788777 466677888877763321
Q ss_pred EE--------Eec---CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec----C----CCCcce
Q psy5806 1124 KI--------LVN---DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----D----LAFPNE 1184 (1332)
Q Consensus 1124 ~~--------~~~---~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----~----l~~p~g 1184 (1332)
.. +.. ....--|+|-||.++.||++-... .-+|+.+..+-+....-+.. . +....|
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-----P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-----PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-----CcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 11 111 122347899999999999996543 35677776543221111110 0 233568
Q ss_pred EEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe----------ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1185 LAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS----------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~----------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
|.+|..++.|++--..+..+...|.+|..+..+.- ...|.|||. |++|.||+.. +-+..++..
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiam------Dd~g~lYIvS-EPnlfy~F~ 310 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAM------DDDGNLYIVS-EPNLFYRFT 310 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEE------CCCCCEEEEe-cCCcceecc
Confidence 99999899999988889999999999987655531 678899999 7788899886 444555544
Q ss_pred e
Q psy5806 1255 E 1255 (1332)
Q Consensus 1255 ~ 1255 (1332)
+
T Consensus 311 ~ 311 (316)
T COG3204 311 P 311 (316)
T ss_pred c
Confidence 3
No 49
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.00014 Score=80.60 Aligned_cols=193 Identities=12% Similarity=0.076 Sum_probs=119.3
Q ss_pred eeccccc-ceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEE-EEeCCCCeEEEEe
Q psy5806 733 LPLRQLK-MVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIY-WTDMNAQTIMVSD 810 (1332)
Q Consensus 733 ~~~~~~~-~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLY-wtD~~~~~I~v~~ 810 (1332)
.+++++. ++.+|+|++.+++||-.......|...+++|.-..++--.+...++||++ +++..| .++...+++.++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y--~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITY--LGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE---STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEE--ECCCEEEEEEcCCCcEEEEE
Confidence 4566665 59999999999999988888899999999987777776677889999999 444444 4566678888888
Q ss_pred CC--CCc--eEE---E--Eec--CCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEec--CCCCcEEEec------c-
Q psy5806 811 ID--GKN--AKV---L--FWL--NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM--DGTNRAVFET------E- 870 (1332)
Q Consensus 811 ld--G~~--~~~---l--~~~--~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~--dG~~~~~l~~------~- 870 (1332)
.+ ++. +.. + -.. +-.-..|||.||.++.||.+--... .+|..... .+....+... .
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P----~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP----KRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS----EEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC----hhhEEEccccCccceeeccccccccccc
Confidence 73 221 111 1 111 1123689999999999998742221 24555554 2223232221 1
Q ss_pred -cccCceeEEeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe--c-------cCCcceEEEEe-CCEEEEEeC
Q psy5806 871 -VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--A-------VQSHPYTLTVL-DYYVYWTDV 932 (1332)
Q Consensus 871 -l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~--~-------~~~~P~~la~~-~~~iywtD~ 932 (1332)
+..|++|++|+.+ +.||.......+|..++.+|.-...+. . .+.+|-|||++ ++.||.+.-
T Consensus 169 ~~~d~S~l~~~p~t-~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 169 FVRDLSGLSYDPRT-GHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp -SS---EEEEETTT-TEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred eeccccceEEcCCC-CeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 5679999999999 999999999999999999997555442 1 35789999999 668988864
No 50
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.32 E-value=0.00011 Score=84.01 Aligned_cols=185 Identities=21% Similarity=0.200 Sum_probs=120.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCC------------CeEEEEECCCCCCceeEee-c----CCCCceeeEEEecC-----CeE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS------------GNLRTFDMSDSTRIKPIPL-M----NDTIRDNFVIDWVA-----NNI 1103 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~------------~~I~~~~l~~g~~~~~i~~-~----~~~~p~glAvDw~~-----~~L 1103 (1332)
++.++..|. .++||+.|.+. .+|..++|.++.-..++.. . .......|+||-.. +.+
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 356677774 45788888542 3677888775443222221 1 22356789999643 579
Q ss_pred EEEcCCCceEEEEeeC-CceEEEEec-------------------CCCCceEEEEcC---CCcEEEEEecCCCCCCCCCc
Q psy5806 1104 YYIDSQMHTINVARSD-GQHKKILVN-------------------DLMEPLAIAVYP---RRGLLFYSHWGLYDNSPTTK 1160 (1332)
Q Consensus 1104 Y~td~~~~~I~v~~ld-G~~~~~~~~-------------------~~~~P~~iavdp---~~g~Lywtd~~~~~~~~~~~ 1160 (1332)
|+||.....|.|+++. |+.++++.. ..+...|||+.| ..++|||.-..+ .+
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss------~~ 154 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS------RK 154 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------SE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC------Cc
Confidence 9999999999999997 555555321 112357888877 456899998655 57
Q ss_pred EEEEec----CCCc---------eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC----CceEEEEe----
Q psy5806 1161 IEKVYL----DGSY---------RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG----RSRKIVIS---- 1219 (1332)
Q Consensus 1161 I~r~~l----dG~~---------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG----~~~~~~~~---- 1219 (1332)
++++.. +.+. .+.+.. ......|+++|. ++.||+++...+.|.+.+.++ .+.++++.
T Consensus 155 ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~ 232 (287)
T PF03022_consen 155 LYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRT 232 (287)
T ss_dssp EEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-
T ss_pred EEEEEHHHhhCccccccccccccceeccc-cCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCce
Confidence 888876 2211 223333 224567999996 899999999999999999998 45556665
Q ss_pred ecccceEEEecCCcccc--ccEEEEEEC
Q psy5806 1220 KVAPYGLSVRQSPGKAF--IVELYWTDW 1245 (1332)
Q Consensus 1220 ~~~P~glav~~~~~~~~--~~~lYwtd~ 1245 (1332)
+..|.+|++ +. +++||++..
T Consensus 233 l~~pd~~~i------~~~~~g~L~v~sn 254 (287)
T PF03022_consen 233 LQWPDGLKI------DPEGDGYLWVLSN 254 (287)
T ss_dssp GSSEEEEEE-------T--TS-EEEEE-
T ss_pred eeccceeee------ccccCceEEEEEC
Confidence 789999999 33 499999874
No 51
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.21 E-value=2.3e-06 Score=67.58 Aligned_cols=42 Identities=33% Similarity=0.740 Sum_probs=37.8
Q ss_pred EEEeCCCCCCceEEEcCCCCeEEEEecCCCCceeEecCCCCCc
Q psy5806 241 ILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNR 283 (1332)
Q Consensus 241 ~l~~~~~~~pr~iavdp~~g~~fwtd~g~~~~Iera~mdGs~~ 283 (1332)
+++...+..|.+||+||.+++|||+|+.. ..|+|+.|||+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~-~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCC-CEEEEEeCCCCCC
Confidence 45667899999999999999999999986 8999999999864
No 52
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.15 E-value=0.00062 Score=81.55 Aligned_cols=156 Identities=13% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-----Eee-cCCCCceeeEEEec------CCeEEEEcC-
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-----IPL-MNDTIRDNFVIDWV------ANNIYYIDS- 1108 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-----i~~-~~~~~p~glAvDw~------~~~LY~td~- 1108 (1332)
.++..|.+|+|.+. +++|+++...|+|++++..++....+ ++. .+.+.+.|||+++. ++.||++-.
T Consensus 27 ~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 27 SGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 46778999999986 58999986679999997443322111 111 24567899999854 467999742
Q ss_pred --------CCceEEEEeeCCc-----eEEEEecCC-----CCceEEEEcCCCcEEEEEecCCC-----------------
Q psy5806 1109 --------QMHTINVARSDGQ-----HKKILVNDL-----MEPLAIAVYPRRGLLFYSHWGLY----------------- 1153 (1332)
Q Consensus 1109 --------~~~~I~v~~ldG~-----~~~~~~~~~-----~~P~~iavdp~~g~Lywtd~~~~----------------- 1153 (1332)
...+|.++.++.. ..+++..++ -.-..|+++| .|+||++--...
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~~~ 184 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQHTP 184 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhcccc
Confidence 2456777777521 123333322 1245799999 789999842210
Q ss_pred --------C-CCCCCcEEEEecCCCc----------eEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1154 --------D-NSPTTKIEKVYLDGSY----------RTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1154 --------~-~~~~~~I~r~~ldG~~----------~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
+ +...++|.|++.||+. +..|...++..|.||++|+ +++||.+|-+
T Consensus 185 ~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~G 249 (454)
T TIGR03606 185 TQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQG 249 (454)
T ss_pred ccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecC
Confidence 0 1124689999999973 3457777889999999998 7899999865
No 53
>KOG1520|consensus
Probab=98.15 E-value=5.1e-05 Score=86.27 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=99.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC----CceeeEEEecCCeEEEEcCCC----ceEEEEe
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT----IRDNFVIDWVANNIYYIDSQM----HTINVAR 1117 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~----~p~glAvDw~~~~LY~td~~~----~~I~v~~ 1117 (1332)
.|.||+|+.+++.||++|...| +..++.. |...+.+.....+ -..+|.||. ++.|||||+.. ..+..+-
T Consensus 116 RPLGl~f~~~ggdL~VaDAYlG-L~~V~p~-g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYLG-LLKVGPE-GGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CcceEEeccCCCeEEEEeccee-eEEECCC-CCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEee
Confidence 4789999999999999998777 7777766 4444444433333 457899998 99999999874 1122222
Q ss_pred eC----C---------ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---EEEEecCCCC
Q psy5806 1118 SD----G---------QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---TVLVEEDLAF 1181 (1332)
Q Consensus 1118 ld----G---------~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---~~l~~~~l~~ 1181 (1332)
+. | +..+++..++.-|+|||++|.+.++.+++... .+|.|..+.|... +++++.-.+.
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~------~ri~rywi~g~k~gt~EvFa~~LPG~ 266 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT------ARIKRYWIKGPKAGTSEVFAEGLPGY 266 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc------ceeeeeEecCCccCchhhHhhcCCCC
Confidence 22 2 22334567899999999999999999999765 8999999999876 6666544578
Q ss_pred cceEEEecC
Q psy5806 1182 PNELAIDFK 1190 (1332)
Q Consensus 1182 p~glaiD~~ 1190 (1332)
|.-|..|.+
T Consensus 267 PDNIR~~~~ 275 (376)
T KOG1520|consen 267 PDNIRRDST 275 (376)
T ss_pred CcceeECCC
Confidence 888888843
No 54
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.05 E-value=7.4e-06 Score=64.58 Aligned_cols=42 Identities=45% Similarity=0.838 Sum_probs=38.4
Q ss_pred EEecCCccCceeeeeecCCCeEEEEeCCCCeEEEEeCCCCcE
Q psy5806 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRR 326 (1332)
Q Consensus 285 ~l~~~~~~~p~gl~iD~~~~rlYw~D~~~~~i~~~~~dG~~~ 326 (1332)
+++.+.+..|+||++|..+++|||+|.....|++++++|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 456678999999999999999999999999999999999863
No 55
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0012 Score=80.85 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=125.1
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
.....|++++++|+|+.... ..|+.+++..| ..+.+. ...+.....++.+.++.|+++... ...|.++++++..
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VREKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCC-CeEEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 34678899999998876443 46999998743 333332 222233467888889989886433 3358888887665
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|+++++++...+.+.... ....+.++.++++.||++....
T Consensus 298 ~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 298 LTRITRHRAIDTEPSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC
Confidence 544433333456678899888888875322 2468999999876655554322 2334568899999999986543
Q ss_pred -CeEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCC--EEEEEEec
Q psy5806 1202 -KRIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREK 1256 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~ 1256 (1332)
..|..+|+++...+.+.. ...| +.+- ++.+|+++....+ .++.++..
T Consensus 373 ~~~I~~~dl~~g~~~~lt~~~~d~~p-s~sp-------dG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTSTRLDESP-SVAP-------NGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred ceEEEEEECCCCCeEEccCCCCCCCc-eECC-------CCCEEEEEEecCCceEEEEEECC
Confidence 368889998776554443 2223 3333 7778888765333 46677753
No 56
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.00 E-value=3.4e-05 Score=70.64 Aligned_cols=77 Identities=22% Similarity=0.288 Sum_probs=59.6
Q ss_pred eEEEEcCCCcEEEEEecCCC-C----------CCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLY-D----------NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~-~----------~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+|+|++..|.+||||.... . ..+.+++.+.++.....+++.. +|..|||+++++++..|++++....
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCc
Confidence 37899997799999995421 1 3357899999999988777776 7999999999999999999999999
Q ss_pred eEEEEecCC
Q psy5806 1203 RIEYCDFFG 1211 (1332)
Q Consensus 1203 ~I~~~d~dG 1211 (1332)
||.++-+.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999998887
No 57
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.94 E-value=0.0034 Score=77.00 Aligned_cols=201 Identities=7% Similarity=-0.048 Sum_probs=131.4
Q ss_pred ceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......|.+.+++|+++... ...|+..++..| ..+.+. ...+...+.++.+.++.|+++-.. ...|.++++++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 280 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QRELVG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSG 280 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cEEEee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCC
Confidence 45678899999988887643 357999998744 333332 222334567788888888776433 346888888866
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
....+..........+.+|...+|+++.... +...|++.+++|...+.+.... ..-...++.+++++|+++....
T Consensus 281 ~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 281 TTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred ceEEccCCCCccCceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCC
Confidence 5555543333345678889777777764322 2468999999998776665422 2234467888999998876443
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC-----CEEEEEEecCC
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA-----MSVVIAREKSD 1258 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~-----~~V~~~~~~~g 1258 (1332)
.+|..++++|...+.+.......++++ .+++.+||++-... ..++++++.++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~~~~~p~~-----spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGFLVEGPTW-----APNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCCCCCCCeE-----CCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 479999998876555444333445566 34677888765432 46889987655
No 58
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.94 E-value=0.011 Score=71.08 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=103.4
Q ss_pred eEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEE------Ee-cCCCCCeEEEEeCC------CCeEE
Q psy5806 774 ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVL------FW-LNLYRPRSIVVHYG------LGLMV 840 (1332)
Q Consensus 774 ~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l------~~-~~~~~P~~Iavdp~------~g~ly 840 (1332)
.+++.+++..|-+|++...+ .||++.....+|.+.+.++.....+ +. .+..-+-+||+||. +++||
T Consensus 22 ~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 34567889999999998765 6999998778888887654433222 11 13456899999965 46888
Q ss_pred EEecccCcC----CCCceEEEecCCC-----CcEEEeccc---cc--CceeEEeCCCCCeEEEEeCC-------------
Q psy5806 841 WADWSRTRL----TNNRIEMAHMDGT-----NRAVFETEV---IW--PSCLAIDYSDNPKLYWVDTS------------- 893 (1332)
Q Consensus 841 wtd~g~~~~----~~~~I~r~~~dG~-----~~~~l~~~l---~~--P~gl~iD~~~~~~lYw~d~~------------- 893 (1332)
++-...... ...+|.|..++.. +.++|+..+ .. -..|+++.++ +||++-..
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG--~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG--KIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC--cEEEEECCCCCCCcccccCcc
Confidence 874211000 1257999887632 234444332 11 1257888766 79995322
Q ss_pred -------------------CCeEEEEccCCCc-----------eeEEeccCCcceEEEEe-CCEEEEEeCCC
Q psy5806 894 -------------------KHTIEYKTLATGR-----------AKRAYAVQSHPYTLTVL-DYYVYWTDVQH 934 (1332)
Q Consensus 894 -------------------~~~I~~~~~dG~~-----------~~~l~~~~~~P~~la~~-~~~iywtD~~~ 934 (1332)
.++|.+++.||+. .++....+..|++++++ .+.||.+|...
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCC
Confidence 2478999999862 23334488899999988 66888888664
No 59
>KOG4499|consensus
Probab=97.91 E-value=0.0006 Score=71.66 Aligned_cols=194 Identities=12% Similarity=0.132 Sum_probs=116.8
Q ss_pred EEeecCCCceEEEEecCCCce----------EEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCC
Q psy5806 743 SVDVDTKNEYIYWSDISEKTI----------ERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812 (1332)
Q Consensus 743 ~id~d~~~~~lYwsD~~~~~I----------~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ld 812 (1332)
+..+|...+.|||.|...+.| +|+.++|....-++-.-...|++.|+= -+. +.-..++|
T Consensus 19 gp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~----------~G~-kf~i~nwd 87 (310)
T KOG4499|consen 19 GPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVG----------CGS-KFVIVNWD 87 (310)
T ss_pred CCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEe----------ecc-eEEEEEcc
Confidence 345667778899988655554 555555543322322223444444442 111 23444555
Q ss_pred CCceEEEEecC-------C--CCCeEEEEeCCCCeEEEEec---ccCcCCCCceEEEecCCCCcEEEecccccCceeEEe
Q psy5806 813 GKNAKVLFWLN-------L--YRPRSIVVHYGLGLMVWADW---SRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAID 880 (1332)
Q Consensus 813 G~~~~~l~~~~-------~--~~P~~Iavdp~~g~lywtd~---g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD 880 (1332)
|....+++... . .+-..=.|||. |+.|.-.. +.......---+..+-|.....+.+.+.-||||+-|
T Consensus 88 ~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~-Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd 166 (310)
T KOG4499|consen 88 GVSESAKVYRTLFEVQPDRKKNRLNDGKVDPD-GRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD 166 (310)
T ss_pred cccceeeeeeeccccCchHHhcccccCccCCC-CceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccc
Confidence 54333322111 0 12223346776 55455322 111000111224455566666677778889999999
Q ss_pred CCCCCeEEEEeCCCCeEEEEccC---C--CceeEEec-------cCCcceEEEEe-CCEEEEEeCCCCEEEEEECCCCeE
Q psy5806 881 YSDNPKLYWVDTSKHTIEYKTLA---T--GRAKRAYA-------VQSHPYTLTVL-DYYVYWTDVQHSKIYRANKYDVKD 947 (1332)
Q Consensus 881 ~~~~~~lYw~d~~~~~I~~~~~d---G--~~~~~l~~-------~~~~P~~la~~-~~~iywtD~~~~~i~~~~~~~g~~ 947 (1332)
.+. ...|+.|+.+-.|...++| | ++|+++.. .-..|-|++++ +++||.+-|..++|+++++.+|+.
T Consensus 167 ~d~-K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 167 SDA-KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred ccC-cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 888 9999999999999777754 2 46666653 23457899998 789999999999999999999965
Q ss_pred EE
Q psy5806 948 IV 949 (1332)
Q Consensus 948 i~ 949 (1332)
+.
T Consensus 246 L~ 247 (310)
T KOG4499|consen 246 LL 247 (310)
T ss_pred EE
Confidence 54
No 60
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.90 E-value=0.093 Score=60.69 Aligned_cols=395 Identities=14% Similarity=0.126 Sum_probs=203.6
Q ss_pred CCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEEeCCCC-----eEEEEeCCCCceEEEEecC
Q psy5806 749 KNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQ-----TIMVSDIDGKNAKVLFWLN 823 (1332)
Q Consensus 749 ~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwtD~~~~-----~I~v~~ldG~~~~~l~~~~ 823 (1332)
.+..||+.+...+.+.|+.--|+.-.. +.| .++.++-|.-||.... .......||..-..+ +
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT~--------VaG--~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---n 171 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFTR--------VAG--WIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL---N 171 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccce--------eec--cCCCCCEEEEeccCCCcccceeeeEEccCCceeeec---c
Confidence 445788888888888887544432211 111 1223444444554432 233444455522211 1
Q ss_pred CCCCe------EEEEeCC--CCeEEEEecccCcCCCCceEEEecCCCCcEEEecc---cccCceeEEeCCCCCeEEEEeC
Q psy5806 824 LYRPR------SIVVHYG--LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE---VIWPSCLAIDYSDNPKLYWVDT 892 (1332)
Q Consensus 824 ~~~P~------~Iavdp~--~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~---l~~P~gl~iD~~~~~~lYw~d~ 892 (1332)
+.-.. +|.|-.. ...-+|-.+. .++.++|+...-.|..-+.+++- +.+|.=+ + +|+|+...
T Consensus 172 lGpathiv~~dg~ivigRntydLP~WK~Yk--GGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV-----~-~RvYFlsD 243 (668)
T COG4946 172 LGPATHIVIKDGIIVIGRNTYDLPHWKGYK--GGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV-----G-ERVYFLSD 243 (668)
T ss_pred CCceeeEEEeCCEEEEccCcccCccccccc--CCccceEEEEecCCcceeeeeecCCCcCCceEE-----c-ceEEEEec
Confidence 11111 1111111 1234555442 11336787777777555555543 6676543 4 79999764
Q ss_pred --CCCeEEEEccCCCceeEEec-cCCcceE-------EEE-eCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEe
Q psy5806 893 --SKHTIEYKTLATGRAKRAYA-VQSHPYT-------LTV-LDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVR 961 (1332)
Q Consensus 893 --~~~~I~~~~~dG~~~~~l~~-~~~~P~~-------la~-~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~ 961 (1332)
+.+.|+++|++|...+.--. .--.|.. |.+ .++.||--|..+.++.+.+ -++|.+.+
T Consensus 244 ~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekld--------I~lpl~rk---- 311 (668)
T COG4946 244 HEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLD--------IGLPLDRK---- 311 (668)
T ss_pred ccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeee--------cCCccccc----
Confidence 45799999999976443211 1111211 222 2566666666666665533 22221110
Q ss_pred ccccCCCCCcccCCCCCCccccccCCCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCccccc
Q psy5806 962 AAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPF 1041 (1332)
Q Consensus 962 ~~~~~~~~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi 1041 (1332)
..+++- .+|-.-. ..|.+ .+..++.++++.+ ...... ... ..+++
T Consensus 312 ~k~~k~-~~pskyl--------------------edfa~---------~~Gd~ia~VSRGk-aFi~~~--~~~--~~iqv 356 (668)
T COG4946 312 KKQPKF-VNPSKYL--------------------EDFAV---------VNGDYIALVSRGK-AFIMRP--WDG--YSIQV 356 (668)
T ss_pred cccccc-cCHHHhh--------------------hhhcc---------CCCcEEEEEecCc-EEEECC--CCC--eeEEc
Confidence 112211 1221100 00111 1344555555565 332221 111 12232
Q ss_pred CCccceEEEEEe---CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1042 PEYMSSIFFDYH---YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1042 ~~~~~~~~id~d---~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
.. ..++-|. ...+.+-...-....|-.++.+ +...+.+ ..++++.+.++++..+..+-+++. +..|-++++
T Consensus 357 ~~---~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNd-r~el~vidi 430 (668)
T COG4946 357 GK---KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-GGEVKRI-EKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDI 430 (668)
T ss_pred CC---CCceEEEEEccCCcceEEeccCCceEEEEecC-CceEEEe-eCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEe
Confidence 22 2223332 2223344444344477777765 4444444 378899999999998888877764 456778899
Q ss_pred CCceEEEE-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEE
Q psy5806 1119 DGQHKKIL-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1119 dG~~~~~~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~ 1197 (1332)
+....+.+ .+...-..+++.+|...++-++=..++ -+..|...+|+|...-.+.+ ....-..=|+|++++.||+-
T Consensus 431 dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy---~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 431 DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY---YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCCCeeEecccccceeEEEEEcCCceeEEEecCcce---eeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEE
Confidence 85444443 334456788999998777766643321 24568888999966443332 33333445899999999997
Q ss_pred EcCCCeEEEEecCCCceEEEEe-----ecccceEEE
Q psy5806 1198 DSTNKRIEYCDFFGRSRKIVIS-----KVAPYGLSV 1228 (1332)
Q Consensus 1198 d~~~~~I~~~d~dG~~~~~~~~-----~~~P~glav 1228 (1332)
.... +|-++-+++.+ ...|+=+.+
T Consensus 507 s~Rs-------LdPs~Drv~fnf~f~~vskPylv~L 535 (668)
T COG4946 507 SARS-------LDPSNDRVIFNFSFQRVSKPYLVVL 535 (668)
T ss_pred eccc-------cCCCCCeeEEEEEEeeeccceEEEe
Confidence 5432 44443333332 455665555
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.74 E-value=0.029 Score=62.83 Aligned_cols=201 Identities=11% Similarity=0.018 Sum_probs=127.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKIL 1126 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~ 1126 (1332)
..+.+.+.++.|+.+. ..+.|+..++.++.....+. .....+..++++.. ++++++....+.|.++++. ++....+
T Consensus 55 ~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 55 RDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred eEEEECCCCCEEEEEc-CCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 4888888876776665 57889888877433333222 22335677787755 4566666667789999997 4444444
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
......+..++++|.+.+|+..... +.|...++........+...-.....++++++++.|+.+.. .+.|..
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i 203 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKL 203 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEE
Confidence 4333568999999975555554412 45777777644433333333345778899888778887755 788999
Q ss_pred EecCCCceEEEE-e-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1207 CDFFGRSRKIVI-S-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1207 ~d~dG~~~~~~~-~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|+......... . ...+.++++ ..++.++++-...+.|...+..++ .....+.
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~ 258 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAF------SPDGYLLASGSEDGTIRVWDLRTG---ECVQTLS 258 (289)
T ss_pred EECCCCceecchhhcCCceEEEEE------cCCCcEEEEEcCCCcEEEEEcCCc---eeEEEcc
Confidence 998743332222 2 445677777 122556666656788988887766 4444444
No 62
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.0062 Score=74.63 Aligned_cols=199 Identities=9% Similarity=0.015 Sum_probs=126.0
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~ 1122 (1332)
.....|++.+++|+++.... ..|+.+++..|. .+.+. ...+.....++.+.++.|+++-. +...|.++++++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~-~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVA-SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEec-cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 45678899998999886543 469999987433 33332 22223346788888998987633 23468888988655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+++|...+|+++.... +...|+++++++...+.+...+ ......++.++++.|+++....
T Consensus 284 ~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 284 LTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----GRPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred eEECccCCCCccceEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCCC
Confidence 444433323345678899777787774221 2467999999876655554322 3344678999999999986543
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecC
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKS 1257 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~ 1257 (1332)
..|...|+++...+.+.........+. .+++.+|+++.. ....|+.++..+
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~~~~p~~-----spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSLDESPSF-----APNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCCCCCceE-----CCCCCEEEEEEecCCceEEEEEECCC
Confidence 368999997765544433222233344 336777777664 345677777643
No 63
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.71 E-value=0.0095 Score=73.01 Aligned_cols=200 Identities=9% Similarity=0.022 Sum_probs=125.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......+++.+++|+|+.... ..|+..++.+|. .+.+. ...+.....++.+.++.|+++-.. ...|.+.++++.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~-~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQIT-NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEcc-CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 346778999999998765443 469999987443 33332 222233456777778888876432 346888898876
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+..........+.+|....||++.... +...|++.++++...+.+.... ......+++++++.|+++....
T Consensus 278 ~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 278 QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CeEEcccCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC
Confidence 5554443323345567888777887774322 2468999999877665554322 2223457888999999987543
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC--CEEEEEEecC
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKS 1257 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~ 1257 (1332)
..|..+|+++...+.+.........++ .+.+.+|+++.... ..|+.++..+
T Consensus 353 ~~~~l~~~dl~tg~~~~lt~~~~~~~p~~-----spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 353 GNFHVAAQDLQRGSVRILTDTSLDESPSV-----APNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred CceEEEEEECCCCCEEEccCCCCCCCceE-----CCCCCEEEEEEecCCceEEEEEECCC
Confidence 358899998766555544211122344 33778888887543 4567777643
No 64
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.71 E-value=0.012 Score=71.74 Aligned_cols=189 Identities=10% Similarity=-0.000 Sum_probs=119.6
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
....++++.+++|+|+.... ..|+.+++.++. ...+. ...+....+++.+.++.||++... ...|...++++..
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEee-cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 45667899999999987544 568888877432 22222 222344567888778889886443 3468788887654
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|+++++++...+.+... -.....++++++++.|+++....
T Consensus 270 ~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 270 LTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFR-GGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred EEECCCCCCCCCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecC-CCCccCeEECCCCCEEEEEEccCC
Confidence 444332222233457788777787765322 246899999988776555432 24455678899999999987643
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
.+|..+|+++...+.+.........++ .+++++|+++....
T Consensus 345 ~~~i~~~d~~~~~~~~l~~~~~~~~p~~-----spdg~~l~~~~~~~ 386 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTDTGLDESPSF-----APNGRMILYATTRG 386 (417)
T ss_pred ceEEEEEeCCCCCeEEccCCCCCCCceE-----CCCCCEEEEEEeCC
Confidence 378899998765554443222223333 23677888877643
No 65
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.68 E-value=0.015 Score=70.96 Aligned_cols=197 Identities=8% Similarity=-0.005 Sum_probs=120.8
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~ 1122 (1332)
.....+++.+++|+++.... ..|+..++.+|. ...+. ...+.....++.+.++.|+++-.. ...|.+.++++..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-~~~l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-RRVVA-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-EEEee-cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 45778999999998876443 459999987443 22332 222334567888888999876333 3457777777655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC-
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN- 1201 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~- 1201 (1332)
.+.+..........+.+|...+|+++.... ....|++.++++...+.+...+ ......++.++++.|+++....
T Consensus 276 ~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 276 LRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred cEECCCCCCCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCC
Confidence 444433222334567899777787764221 2478999999877655554322 2223467888999998876543
Q ss_pred -CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCC--CEEEEEEe
Q psy5806 1202 -KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEA--MSVVIARE 1255 (1332)
Q Consensus 1202 -~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~ 1255 (1332)
..|...|+++...+.+.........+. .+++.+||++-... ..++.++.
T Consensus 351 ~~~I~v~d~~~g~~~~lt~~~~~~~p~~-----spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTDTTRDESPSF-----APNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cEEEEEEECCCCCeEEccCCCCccCceE-----CCCCCEEEEEEecCCCEEEEEEEC
Confidence 368899988665544443212233444 33677777765432 33566665
No 66
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.66 E-value=0.0082 Score=66.44 Aligned_cols=213 Identities=13% Similarity=0.118 Sum_probs=133.3
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCC----CCCceeEee-c------CCCCceeeEEEecCC---------
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSD----STRIKPIPL-M------NDTIRDNFVIDWVAN--------- 1101 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~----g~~~~~i~~-~------~~~~p~glAvDw~~~--------- 1101 (1332)
+.+.|+.||++.+.+ .+|++|-..+....++.+. |.....++. . ....|.|++++--..
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 568899999999975 6788887777777666430 122222222 1 234799999983221
Q ss_pred ----eEEEEcCCCceEEEEeeC-Cce----EEE-EecC--CCCceEEEEcCC--CcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1102 ----NIYYIDSQMHTINVARSD-GQH----KKI-LVND--LMEPLAIAVYPR--RGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1102 ----~LY~td~~~~~I~v~~ld-G~~----~~~-~~~~--~~~P~~iavdp~--~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
.|+.+ +.++|..++.. +.. ..+ +..+ -.-=.|+|+-+. ..+||-+|... ++|... |
T Consensus 99 ~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~------g~IDVF--d 168 (336)
T TIGR03118 99 GPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQ------GRIDVF--K 168 (336)
T ss_pred cceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCC------CceEEe--c
Confidence 24333 35567666643 111 112 2211 112256777643 56899999865 677755 4
Q ss_pred CCceEEEEecCC--------CCcceEEEecCCCEEEEEEcC-------------CCeEEEEecCCCceEEEEe---eccc
Q psy5806 1168 GSYRTVLVEEDL--------AFPNELAIDFKQRRLFWADST-------------NKRIEYCDFFGRSRKIVIS---KVAP 1223 (1332)
Q Consensus 1168 G~~~~~l~~~~l--------~~p~glaiD~~~~~LY~~d~~-------------~~~I~~~d~dG~~~~~~~~---~~~P 1223 (1332)
++...+-+.... ..|.+|.- -+++||++-+. .+.|..+|++|.-.+.+.+ +..|
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAP 246 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCC
Confidence 444333222111 23555543 47899998543 4689999999997666666 8999
Q ss_pred ceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
.||++--..-..+.+.|.+-+...++|-..|..+| .-+..++..
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~ 290 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDP 290 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCC
Confidence 99999333333356889999999999999999888 444455443
No 67
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.0048 Score=67.79 Aligned_cols=186 Identities=10% Similarity=0.022 Sum_probs=131.4
Q ss_pred cceeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeCCCCCccceeEecCCCeEEEE-eCCCCeEEEEeCCCCceE
Q psy5806 739 KMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWT-DMNAQTIMVSDIDGKNAK 817 (1332)
Q Consensus 739 ~~~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~~~~~p~glAvD~~~~nLYwt-D~~~~~I~v~~ldG~~~~ 817 (1332)
.+..++.|++.+++||-+-...-.|..+...|--..++--.++..|++|+. +++|.|+. |....++.+..++-.-+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~~ 163 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDADTTV 163 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCCccE
Confidence 468899999999999988877788888888988888887788999999887 88888876 666778888888644222
Q ss_pred EE-----Ee-cC----CCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEec-------c--cccCceeE
Q psy5806 818 VL-----FW-LN----LYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET-------E--VIWPSCLA 878 (1332)
Q Consensus 818 ~l-----~~-~~----~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~-------~--l~~P~gl~ 878 (1332)
.. +. +. -.--.|+|-||.++.||++--... -+|....+.-+.-..-.. . +.-.+||.
T Consensus 164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P----~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP----IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC----cEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 11 10 00 122568999999888888743222 355555533222111110 1 44567999
Q ss_pred EeCCCCCeEEEEeCCCCeEEEEccCCCceeEEe---------ccCCcceEEEEe-CCEEEEEe
Q psy5806 879 IDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY---------AVQSHPYTLTVL-DYYVYWTD 931 (1332)
Q Consensus 879 iD~~~~~~lYw~d~~~~~I~~~~~dG~~~~~l~---------~~~~~P~~la~~-~~~iywtD 931 (1332)
.|... +.|++.......+..++.+|.-+..+. ..++.|-|||.+ ++.||.+.
T Consensus 240 ~~~~~-~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 240 FNAIT-NSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ecCCC-CcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 99888 899998888899999999998655543 156778899998 55777653
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.57 E-value=0.03 Score=68.39 Aligned_cols=199 Identities=8% Similarity=0.056 Sum_probs=124.7
Q ss_pred ceEEEEEeCCCcEEEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
......+++.+++|.|+... ...|+..++.+|. .+.+. ...+....+++.+.++.|+++... ...|.++++++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35678899999888876533 3468888887433 33332 222233457888889999987433 346888898865
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+..........+.+|....|+++.... ....|+++++++...+.+... .......++.++++.|+++....
T Consensus 278 ~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~ 352 (429)
T PRK03629 278 QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNG 352 (429)
T ss_pred CEEEccCCCCCcCceEECCCCCEEEEEeCCC----CCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccC
Confidence 5544444434556788999777776664221 246899999998776655432 23344578888999998876543
Q ss_pred --CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCC--EEEEEEec
Q psy5806 1202 --KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREK 1256 (1332)
Q Consensus 1202 --~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~ 1256 (1332)
..|..+|+++...+.+.....-...++ .+++.+|+++....+ .++.++..
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~-----SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTDTFLDETPSI-----APNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CCceEEEEECCCCCeEEeCCCCCCCCceE-----CCCCCEEEEEEcCCCceEEEEEECC
Confidence 458888998766555443111112334 336777777765332 35555553
No 69
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.51 E-value=0.055 Score=66.02 Aligned_cols=199 Identities=8% Similarity=-0.032 Sum_probs=118.3
Q ss_pred EEEEEeCCCcE--E-EEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEE--eeC
Q psy5806 1048 IFFDYHYSKNL--I-YFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVA--RSD 1119 (1332)
Q Consensus 1048 ~~id~d~~~~~--l-Y~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~--~ld 1119 (1332)
..-.|.|.+++ + |++... ...|+.+++++| ..+.+.. .-+.....++.+.++.|.++... ...|.+. +++
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~lt~-~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKKILA-LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceEeec-CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 34578888764 3 444432 346999998844 4444432 22334556788889888887532 2244443 443
Q ss_pred C----ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcceEEEecCCCE
Q psy5806 1120 G----QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1120 G----~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+ ..+.+...........+++|...+|+|+.... +...|+++++++.. .+.+.. ........++.+++++
T Consensus 266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKK 340 (428)
T ss_pred cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECcccccceEEecc-CCCCccceeECCCCCE
Confidence 2 22222222222335678999777787775322 24679999886432 333322 2223345788999999
Q ss_pred EEEEEcC--CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCC
Q psy5806 1194 LFWADST--NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
|+++... ...|..+|+++...+.+.. .....+.+. .+++.+||++-. ....|+.++..++
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~w-----SpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSW-----AIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9887543 3479999998776655554 233445555 335677877643 4567888888766
No 70
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.49 E-value=0.04 Score=66.82 Aligned_cols=198 Identities=7% Similarity=0.009 Sum_probs=122.8
Q ss_pred eEEEEEeCCCcE-EEEEeCC--CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCc
Q psy5806 1047 SIFFDYHYSKNL-IYFADMR--SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQ 1121 (1332)
Q Consensus 1047 ~~~id~d~~~~~-lY~sd~~--~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~ 1121 (1332)
.....+++.+++ +|++... ...|+.+++.+| ..+.+.. .-+.....++.+.++.|.++... +..|.++++++.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG-KKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC-cEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 457788998885 7876554 467999998743 3444432 22222234456668888776433 457888888866
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
..+.+......-..-..+|...+|||+.... ..+.|++++++|...+.+...+.. + ..+++++++|.++-...
T Consensus 268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~~--~-~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGKN--N-SSVSTYKNYIVYSSRET 340 (419)
T ss_pred cEEEcccCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCCc--C-ceECCCCCEEEEEEcCC
Confidence 5444433211122346889777888886432 247899999998887666543322 2 37889999988876543
Q ss_pred --------CeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC--CCCEEEEEEecCC
Q psy5806 1202 --------KRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 --------~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
..|..+|++|...+.|.....-...+. .+++..||++.. ....+..++..+.
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~-----SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRF-----SSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEE-----CCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 479999998776555544111112333 336777877764 2334677776543
No 71
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.48 E-value=0.00064 Score=62.34 Aligned_cols=71 Identities=18% Similarity=0.378 Sum_probs=56.7
Q ss_pred eeeEEEecCCeEEEEcCC-----------------CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCC
Q psy5806 1092 DNFVIDWVANNIYYIDSQ-----------------MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYD 1154 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~-----------------~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~ 1154 (1332)
.+|+|+..++.|||||+. .+++-..+...+..+++..++..|+|||+++...+|++++.+.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~-- 78 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR-- 78 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG--
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC--
Confidence 378999777999999875 2578788888877778878999999999999999999999876
Q ss_pred CCCCCcEEEEecCC
Q psy5806 1155 NSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG 1168 (1332)
.+|.|.-+.|
T Consensus 79 ----~Ri~rywl~G 88 (89)
T PF03088_consen 79 ----YRILRYWLKG 88 (89)
T ss_dssp ----TEEEEEESSS
T ss_pred ----ceEEEEEEeC
Confidence 8999999987
No 72
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.47 E-value=8.5e-05 Score=49.62 Aligned_cols=23 Identities=48% Similarity=1.132 Sum_probs=21.0
Q ss_pred ceEEeCCCCceecCCCCCcCCCc
Q psy5806 411 RFTCQCPLGLTLSPDNKSCSESP 433 (1332)
Q Consensus 411 ~~~C~C~~G~~L~~d~~tC~~~~ 433 (1332)
+|+|.|+.||+|.+|+++|.+..
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 69999999999999999998754
No 73
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.45 E-value=0.018 Score=70.73 Aligned_cols=179 Identities=10% Similarity=-0.056 Sum_probs=112.2
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.+...+. .+.......++.+.++.|+|+... ...|.+.++++...+.+..........+.+|...+|
T Consensus 199 ~l~i~d~d-G~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYD-GYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCC-CCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence 45555644 54444443 233344567778788888887433 346888888865544443221223467899987788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEE-eecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVI-SKVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~-~~~~ 1222 (1332)
+++.... ....|+..++++...+.+... .......++.+++++|+++-.. ...|+.+++++...+.+. ....
T Consensus 277 a~~~~~~----g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~ 351 (448)
T PRK04792 277 ALVLSKD----GQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ 351 (448)
T ss_pred EEEEeCC----CCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC
Confidence 8874332 246799999988776655442 2334557888899999887543 456999999765544443 2333
Q ss_pred cceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
..+.++ ++++.+||++....+ .|++++..++
T Consensus 352 ~~~~~~-----SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 352 NLGGSI-----TPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred CcCeeE-----CCCCCEEEEEEecCCceEEEEEECCCC
Confidence 334455 346778988876443 6788887776
No 74
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.42 E-value=0.0035 Score=76.63 Aligned_cols=189 Identities=6% Similarity=-0.056 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEE-------------------ecCCeEEEEcCCCceEE
Q psy5806 1054 YSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID-------------------WVANNIYYIDSQMHTIN 1114 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvD-------------------w~~~~LY~td~~~~~I~ 1114 (1332)
+.+++||+-|-.+.+|-|++|+.-.-.+++...+.....|+++. ..++.|+.++...+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 34678888888889999999885433333333444456666665 22445555555556677
Q ss_pred EEeeCCceEE-EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCE
Q psy5806 1115 VARSDGQHKK-ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1115 v~~ldG~~~~-~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+++.+..... .+..+ .+|+.++++|..+++|+|..+. .....+.-++..-....+.+ ..+...++-.+++.
T Consensus 219 vID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs---E~G~tl~em~a~e~d~~vvf----ni~~iea~vkdGK~ 290 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS---EEGVTLAEMMAAERDWVVVF----NIARIEEAVKAGKF 290 (635)
T ss_pred EEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc---ccCcceeeeccccCceEEEE----chHHHHHhhhCCCE
Confidence 7766632211 12223 4899999999999999996432 01123333332221211222 11111233335666
Q ss_pred EEEEEcCCCeEEEEecCC-----CceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1194 LFWADSTNKRIEYCDFFG-----RSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG-----~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.|+ ..++|..+|..- ......++ +..|.|+++ ++++.++|+++..++.|..+|....
T Consensus 291 ~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v-----SPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 291 KTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT-----SPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred EEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEE-----CCCCCEEEEeCCCCCcEEEEEChhh
Confidence 776 356788877653 23334455 999999999 7889999999999999999998664
No 75
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.028 Score=68.91 Aligned_cols=179 Identities=9% Similarity=0.009 Sum_probs=110.9
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+.++.+ |...+.+. .........++.+.++.|+++.. +...|.+.++++..++.+........+.+++|...+|
T Consensus 183 ~l~~~d~d-g~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEE
Confidence 56666654 54444443 23334556677777888877643 2457889999865554443322234567899977788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++-... ....|+..++++.....|... -......++.+++++|+++-.. ...|+.+|++|...+.+.. ...
T Consensus 261 a~~~~~~----g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~ 335 (435)
T PRK05137 261 VMSLSQG----GNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR 335 (435)
T ss_pred EEEEecC----CCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc
Confidence 7775332 246799999988876665442 2333456888889888877533 3479999998876555543 222
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
-...+. .+++.+|+++.... ..|+.++..++
T Consensus 336 ~~~~~~-----SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 336 YSTPVW-----SPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred ccCeEE-----CCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 223344 34677887776433 46777886544
No 76
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.36 E-value=0.027 Score=68.25 Aligned_cols=186 Identities=12% Similarity=0.025 Sum_probs=115.2
Q ss_pred cEEEEEeCC---CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCe-EEEEcCC--CceEEEEeeCCceEEEEecCC
Q psy5806 1057 NLIYFADMR---SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANN-IYYIDSQ--MHTINVARSDGQHKKILVNDL 1130 (1332)
Q Consensus 1057 ~~lY~sd~~---~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~-LY~td~~--~~~I~v~~ldG~~~~~~~~~~ 1130 (1332)
+.+|++... ...|..++.+ |.+.+.+...+ .-..-+..+.++. +|++... ...|.+.++.+..++.+....
T Consensus 156 r~~~v~~~~~~~~~~l~~~d~d-g~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 156 RKVVFSKYTGPKKSNIVLADYT-LTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred eEEEEEEccCCCcceEEEECCC-CCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence 456666522 2356666655 66655555332 2233455555664 7775443 467889999866555554332
Q ss_pred CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEe
Q psy5806 1131 MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCD 1208 (1332)
Q Consensus 1131 ~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d 1208 (1332)
......+++|...+|.++.... ..+.|+.+++++...+.|.... ..-..-.+.+++++||++... ...|+++|
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 2334566899777888876433 2578999999888766664422 111234688899999998643 33699999
Q ss_pred cCCCceEEEEe-e-cccceEEEecCCccccccEEEEEECCC--------CEEEEEEecCC
Q psy5806 1209 FFGRSRKIVIS-K-VAPYGLSVRQSPGKAFIVELYWTDWEA--------MSVVIAREKSD 1258 (1332)
Q Consensus 1209 ~dG~~~~~~~~-~-~~P~glav~~~~~~~~~~~lYwtd~~~--------~~V~~~~~~~g 1258 (1332)
++|...+.+.. + ..+ ++ ++++.+|.++.... ..|+.++..+|
T Consensus 308 l~~g~~~rlt~~g~~~~---~~-----SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 308 LNSGSVEQVVFHGKNNS---SV-----STYKNYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred CCCCCeEeCccCCCcCc---eE-----CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 99776544433 2 222 33 33777777776533 47888888776
No 77
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.35 E-value=0.023 Score=69.63 Aligned_cols=178 Identities=11% Similarity=-0.017 Sum_probs=110.9
Q ss_pred EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEE
Q psy5806 1069 LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Ly 1146 (1332)
|..++.+ |.....+. .+.......++.+.++.|+++... ...|.+.++++..++.+..........+++|...+|+
T Consensus 186 l~i~D~~-g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 186 LQVADSD-GYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEECCC-CCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 5555544 44444443 222334566777778888887543 3468888998655554432222334678999877888
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-eccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVAP 1223 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P 1223 (1332)
++.... ....|+..++++...+.+.. ........++++++++|+++... ...|+.+++++...+.+.. ....
T Consensus 264 ~~~s~~----g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~ 338 (433)
T PRK04922 264 LTLSRD----GNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN 338 (433)
T ss_pred EEEeCC----CCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc
Confidence 875433 24679999998877655543 22233457888888888877433 3459999987665444433 3333
Q ss_pred ceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
...++ ++++.+|+++.... ..|+.++..++
T Consensus 339 ~~~~~-----SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 339 ARASV-----SPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred cCEEE-----CCCCCEEEEEECCCCceeEEEEECCCC
Confidence 34566 34678888876533 36888887766
No 78
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.34 E-value=0.025 Score=64.79 Aligned_cols=144 Identities=16% Similarity=0.106 Sum_probs=93.7
Q ss_pred CccceeEecCC-----CeEEEEeCCCCeEEEEeC-CCCceEEEEec------------------CCCCCeEEEEeC---C
Q psy5806 783 RTESIAVDAIG-----RKIYWTDMNAQTIMVSDI-DGKNAKVLFWL------------------NLYRPRSIVVHY---G 835 (1332)
Q Consensus 783 ~p~glAvD~~~-----~nLYwtD~~~~~I~v~~l-dG~~~~~l~~~------------------~~~~P~~Iavdp---~ 835 (1332)
....|+||-.. +..|++|.....|.|.++ +|+.++++... ..+...|||+.| .
T Consensus 62 ~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d 141 (287)
T PF03022_consen 62 FLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPD 141 (287)
T ss_dssp GEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTT
T ss_pred ccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCC
Confidence 45568899744 479999999999999998 45666664210 012256778876 3
Q ss_pred CCeEEEEecccCcCCCCceEEEecC----CCCc---------EEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEEcc
Q psy5806 836 LGLMVWADWSRTRLTNNRIEMAHMD----GTNR---------AVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902 (1332)
Q Consensus 836 ~g~lywtd~g~~~~~~~~I~r~~~d----G~~~---------~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~ 902 (1332)
.++|||.-.... ++.+...+ .+.. +.+.+....-.|+++|..+ .||+++.....|.+.+.
T Consensus 142 ~r~LYf~~lss~-----~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G--~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 142 GRWLYFHPLSSR-----KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNG--NLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp S-EEEEEETT-S-----EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTT--EEEEEECCCTEEEEEET
T ss_pred ccEEEEEeCCCC-----cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCC--cEEEecCCCCeEEEEeC
Confidence 458999875433 56665322 2211 1222212344699999955 99999999999999999
Q ss_pred CC----CceeEEec---cCCcceEEEEeC---CEEEEEeCC
Q psy5806 903 AT----GRAKRAYA---VQSHPYTLTVLD---YYVYWTDVQ 933 (1332)
Q Consensus 903 dG----~~~~~l~~---~~~~P~~la~~~---~~iywtD~~ 933 (1332)
++ .+.+++.. .+..|.++++.. ++||++..+
T Consensus 215 ~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 215 DGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp TTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 98 45566654 488999999998 899988643
No 79
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.33 E-value=0.042 Score=67.17 Aligned_cols=179 Identities=7% Similarity=-0.054 Sum_probs=113.9
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC--CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS--QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.+.+.+. .+.......++.+.++.|.++.. ....|.+.++++...+.+........+++++|...+|
T Consensus 180 ~l~~~d~d-g~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCC-CCCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence 56666655 55555554 23334567888888888877532 3457888888865444443222234567899988889
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++.... ....|+..++++...+.+.... ......++.+++++|+++-.. ...|+.++++|...+.+.. ...
T Consensus 258 a~~~~~~----g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~ 332 (429)
T PRK03629 258 AFALSKT----GSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ 332 (429)
T ss_pred EEEEcCC----CCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9985432 2356999999887766665432 344567889899988665432 3479999998766544433 333
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
....++ .+++.+|+++.... ..|+.++..++
T Consensus 333 ~~~~~~-----SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 333 NQDADV-----SSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred ccCEEE-----CCCCCEEEEEEccCCCceEEEEECCCC
Confidence 334555 34667787766433 45778887766
No 80
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.08 Score=58.12 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=116.3
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEEEe
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKILV 1127 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~~~ 1127 (1332)
.|....++++|++|...| |+.+++.+.+....+-.-+. +...|.++. ++.+|++|...+ +.+.++.. +.+++ .
T Consensus 90 ~Dv~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddg-fLivdvsdpssP~l-a 164 (370)
T COG5276 90 ADVRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDG-FLIVDVSDPSSPQL-A 164 (370)
T ss_pred heeEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCc-EEEEECCCCCCcee-e
Confidence 345667889999996665 77777776555544433333 455666666 999999997554 34566643 33332 2
Q ss_pred cCCC----CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1128 NDLM----EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1128 ~~~~----~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.... .-..++|+.. +-|.+.+++ -+..++.......+++..--..|.--++....++.|.++..++
T Consensus 165 grya~~~~d~~~v~ISGn--~AYvA~~d~-------GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg- 234 (370)
T COG5276 165 GRYALPGGDTHDVAISGN--YAYVAWRDG-------GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG- 234 (370)
T ss_pred eeeccCCCCceeEEEecC--eEEEEEeCC-------CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-
Confidence 2212 2357888754 888887765 3666666555555555432233444566667889999997765
Q ss_pred EEEEecCCCc-eEEEEe--ecccceE---EEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1204 IEYCDFFGRS-RKIVIS--KVAPYGL---SVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1204 I~~~d~dG~~-~~~~~~--~~~P~gl---av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.-.|.+|.. .+++-+ ...|.++ .| .+.+.|++|-..+ +-.++..+
T Consensus 235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~V-------s~~~~Yvadga~g-l~~idisn 286 (370)
T COG5276 235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPV-------SGEYAYVADGAKG-LPIIDISN 286 (370)
T ss_pred eEEEecCCCCCceEeeccccCCcccccceec-------ccceeeeeccccC-ceeEeccC
Confidence 6666887765 333333 7778777 88 8999999995443 34444433
No 81
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.037 Score=67.66 Aligned_cols=179 Identities=12% Similarity=-0.006 Sum_probs=108.5
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|..++.+ |.....+.. ........++.+.++.|+++... ...|.+.++++..+..+..........+++|...+|
T Consensus 177 ~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 45555543 444444332 22234456777778888776543 346888999865554443222334578899987788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
+++-... ....|+++++++...+.+... -......++.+++++|+++.. +...|+.++++|...+.+.. ...
T Consensus 255 a~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 255 AVALSRD----GNSQIYTVNADGSGLRRLTQS-SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEccC----CCceEEEEECCCCCcEECCCC-CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC
Confidence 8864332 246899999988776555432 223345678889998887643 24468888887665433332 222
Q ss_pred cceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
....++ ++++.+|+++....+ .|+.++..++
T Consensus 330 ~~~~~~-----SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 330 NTSPRI-----SPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred cCceEE-----CCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 223445 336778887765433 6888887666
No 82
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.26 E-value=0.00015 Score=56.77 Aligned_cols=37 Identities=32% Similarity=0.948 Sum_probs=31.9
Q ss_pred cccCC--CCcce--eeeccCCCceEEeCCCCceecCCCCCc
Q psy5806 393 QSHCA--PKVCS--HICLPNKHRFTCQCPLGLTLSPDNKSC 429 (1332)
Q Consensus 393 ~n~C~--~g~Cs--hlCl~~~~~~~C~C~~G~~L~~d~~tC 429 (1332)
+|||+ ...|. +.|+|+.|+|+|.|+.||++..++++|
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 58898 45686 899999999999999999988877766
No 83
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.23 E-value=0.048 Score=66.80 Aligned_cols=178 Identities=14% Similarity=-0.017 Sum_probs=108.7
Q ss_pred EEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEE
Q psy5806 1069 LRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLF 1146 (1332)
Q Consensus 1069 I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Ly 1146 (1332)
|..++.+ |.....+.. ........++.+.++.|+++... ...|.+.++++...+.+..........+++|...+|+
T Consensus 181 l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 5555544 444434332 22234556777778888765433 3468888998655554432222334678899777888
Q ss_pred EEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-eccc
Q psy5806 1147 YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVAP 1223 (1332)
Q Consensus 1147 wtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~P 1223 (1332)
++.... ....|+..++++...+.+... -......++++++++||++... ...|+.+++++...+.+.. ....
T Consensus 259 ~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 259 FVLSKD----GNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred EEEccC----CCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 775432 236799999998776655432 2334456788888988887543 3469998987665444332 2222
Q ss_pred ceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
...++ ++++++|+++....+ .|+.++..++
T Consensus 334 ~~~~~-----Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 334 ARPRL-----SADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred cceEE-----CCCCCEEEEEEccCCceEEEEEECCCC
Confidence 22334 346788988875443 6888888776
No 84
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.23 E-value=0.11 Score=63.58 Aligned_cols=182 Identities=9% Similarity=0.070 Sum_probs=113.9
Q ss_pred eEEEEEeCCCcEEEEEeCCC--CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCc--eEEEEeeCCce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRS--GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMH--TINVARSDGQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~--~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~--~I~v~~ldG~~ 1122 (1332)
...+.|++++++|+++.... ..|+..++..| ..+.+. ...+....+++.+.++.|+++....+ .|..+++++..
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-~~~~l~-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG-ARKVVA-SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCC-ceEEEe-cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 56788999999998876433 46998898733 223332 22223345788888888988743333 46666777655
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
...+..........+.+|...+|+++.... ....|++++.++.....+ ... . ...++.++++.|+++.. +
T Consensus 284 ~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g~~~I~~~~~~~~~~~~l-~~~-~--~~~~~SpDG~~ia~~~~--~ 353 (429)
T PRK01742 284 PSQLTSGAGNNTEPSWSPDGQSILFTSDRS----GSPQVYRMSASGGGASLV-GGR-G--YSAQISADGKTLVMING--D 353 (429)
T ss_pred eEeeccCCCCcCCEEECCCCCEEEEEECCC----CCceEEEEECCCCCeEEe-cCC-C--CCccCCCCCCEEEEEcC--C
Confidence 444544434456788999777787774321 247899999988766544 221 2 24678888999988754 5
Q ss_pred eEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEEC
Q psy5806 1203 RIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
.|...|+.+...+.+.....-.++++ .+.+.+|+++..
T Consensus 354 ~i~~~Dl~~g~~~~lt~~~~~~~~~~-----sPdG~~i~~~s~ 391 (429)
T PRK01742 354 NVVKQDLTSGSTEVLSSTFLDESPSI-----SPNGIMIIYSST 391 (429)
T ss_pred CEEEEECCCCCeEEecCCCCCCCceE-----CCCCCEEEEEEc
Confidence 68888887654443332111233444 346777777765
No 85
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.22 E-value=0.049 Score=66.38 Aligned_cols=179 Identities=13% Similarity=-0.004 Sum_probs=110.7
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC--ceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM--HTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~--~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+..+.+ |...+.+.. ........++.+.++.|+|+.... ..|.+.++++.....+........+++++|....|
T Consensus 171 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYD-GANPQTITR-SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 45655544 444444442 222234556777788888876443 57888888754443333222344568899977778
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEe-ecc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVIS-KVA 1222 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~-~~~ 1222 (1332)
|++.... ....|+..++++...+.+.... ......++.+++++|+++... ...|+.+++++...+.+.. ...
T Consensus 249 ~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKD----GNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred EEEECCC----CCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 8875432 2467999999877665554321 222345677788888876543 3479999998766544443 444
Q ss_pred cceEEEecCCccccccEEEEEECCC--CEEEEEEecCC
Q psy5806 1223 PYGLSVRQSPGKAFIVELYWTDWEA--MSVVIAREKSD 1258 (1332)
Q Consensus 1223 P~glav~~~~~~~~~~~lYwtd~~~--~~V~~~~~~~g 1258 (1332)
...+++ ++.+.+|+++.... ..|+.++..++
T Consensus 324 ~~~~~~-----spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 324 NASPSW-----SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred ccCeEE-----CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 445555 33677888888643 37888887665
No 86
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.071 Score=62.74 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=78.5
Q ss_pred CCccceEEEEEeCCCcEEEEEeCCCC------eEEEEECCCCC----------------------CceeEe-----ecCC
Q psy5806 1042 PEYMSSIFFDYHYSKNLIYFADMRSG------NLRTFDMSDST----------------------RIKPIP-----LMND 1088 (1332)
Q Consensus 1042 ~~~~~~~~id~d~~~~~lY~sd~~~~------~I~~~~l~~g~----------------------~~~~i~-----~~~~ 1088 (1332)
.+++|+.|+++++..++||.++-... .|.++. . |. ....+. -...
T Consensus 236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~-~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h 313 (399)
T COG2133 236 YGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIR-P-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPH 313 (399)
T ss_pred eccCCccceeecCCCCcEEEEecCCCcccCcccccccc-c-CCccCCceeccCcccCccccCCCcccccccCCceeeccc
Confidence 47899999999999999999985441 222221 1 11 000000 0011
Q ss_pred CCceeeEEEecC------CeEEEEcCCCceEEEEeeCCceEEE----Eec-CCCCceEEEEcCCCcEEEEEecCCCCCCC
Q psy5806 1089 TIRDNFVIDWVA------NNIYYIDSQMHTINVARSDGQHKKI----LVN-DLMEPLAIAVYPRRGLLFYSHWGLYDNSP 1157 (1332)
Q Consensus 1089 ~~p~glAvDw~~------~~LY~td~~~~~I~v~~ldG~~~~~----~~~-~~~~P~~iavdp~~g~Lywtd~~~~~~~~ 1157 (1332)
-.|.||||-.-. +.||++.-....+...+.+|..+.+ +.. ...+|++|++.| .|.||+++...
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~-DGallv~~D~~----- 387 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAP-DGALLVLTDQG----- 387 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECC-CCeEEEeecCC-----
Confidence 256899987322 6899987776667778888884433 332 225899999999 78888887653
Q ss_pred CCcEEEEecCC
Q psy5806 1158 TTKIEKVYLDG 1168 (1332)
Q Consensus 1158 ~~~I~r~~ldG 1168 (1332)
..+|+|+..++
T Consensus 388 ~g~i~Rv~~~~ 398 (399)
T COG2133 388 DGRILRVSYAG 398 (399)
T ss_pred CCeEEEecCCC
Confidence 36899998765
No 87
>KOG2397|consensus
Probab=97.07 E-value=0.00043 Score=80.46 Aligned_cols=72 Identities=28% Similarity=0.423 Sum_probs=62.4
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC----CEEEeeeecCCCCCCCCCCCc
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG----HCILKTWLCDGIPDCSLGEDE 90 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE 90 (1332)
-....|+|.+...=|+...+=|..-||.|||||.+ ...|+.+.|+|.|. .=|+.+.+=||..||=|||||
T Consensus 40 ~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG------tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE 113 (480)
T KOG2397|consen 40 DASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPG------TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDE 113 (480)
T ss_pred ccccceeeccCCcccCHHHhccccccCCCCCCCCc------cccCCCCceeeeecCCCceeeechhccCcccccccCCCC
Confidence 34558999966789999999999999999999953 46799999999863 488999999999999999999
Q ss_pred cc
Q psy5806 91 RN 92 (1332)
Q Consensus 91 ~~ 92 (1332)
..
T Consensus 114 ~~ 115 (480)
T KOG2397|consen 114 YL 115 (480)
T ss_pred cc
Confidence 64
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.01 E-value=0.29 Score=54.59 Aligned_cols=196 Identities=9% Similarity=0.009 Sum_probs=116.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+.++++++.++.|+.+. ..+.|...++.++..... ..........+++...++.|+.+. ..+.|.++++... ...
T Consensus 11 ~i~~~~~~~~~~~l~~~~-~~g~i~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 11 GVTCVAFSPDGKLLATGS-GDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECVR 87 (289)
T ss_pred CEEEEEEcCCCCEEEEee-cCcEEEEEEeeCCCcEEE-EecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccceE
Confidence 356888988877777665 577888888764332222 212222334666665555665554 4678999999853 333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
.+......+..++++|. +.++++.... +.|...++........+......+..++++++++.|+.. ...+.|
T Consensus 88 ~~~~~~~~i~~~~~~~~-~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i 159 (289)
T cd00200 88 TLTGHTSYVSSVAFSPD-GRILSSSSRD------KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTI 159 (289)
T ss_pred EEeccCCcEEEEEEcCC-CCEEEEecCC------CeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cCCCcE
Confidence 34333346888999996 5555554322 467777776333333333223456788888775555544 356789
Q ss_pred EEEecCCCc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1205 EYCDFFGRS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
...|+.... ...+.. ......+++ .+.+..|+.+.. .+.|...+..++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~~~~-~~~i~i~d~~~~ 209 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAF-----SPDGEKLLSSSS-DGTIKLWDLSTG 209 (289)
T ss_pred EEEEccccccceeEecCccccceEEE-----CCCcCEEEEecC-CCcEEEEECCCC
Confidence 998887433 222222 445677777 222335665554 778888887655
No 89
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.01 E-value=0.17 Score=56.91 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCC-------------------CE
Q psy5806 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEA-------------------MS 1249 (1332)
Q Consensus 1190 ~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~-------------------~~ 1249 (1332)
-+++||++|..+++|.++|.+....+++.. ...|.||+. .++++++.-+.. =.
T Consensus 211 hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f-------~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG 283 (335)
T TIGR03032 211 YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAF-------AGDFAFVGLSKLRESRVFGGLPIEERLDALGCG 283 (335)
T ss_pred eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccce-------eCCEEEEEeccccCCCCcCCCchhhhhhhhccc
Confidence 368899999999999999998555566676 889999999 888888876422 23
Q ss_pred EEEEEecCCCCcceEEEEec--CCCCeeeEEEEeCCCC
Q psy5806 1250 VVIAREKSDTGQWDVHLIRS--NQEDFLNIKAISASKQ 1285 (1332)
Q Consensus 1250 V~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~~~~~~q 1285 (1332)
|..+|+.+| ..++.++- .+..+.++.+....++
T Consensus 284 v~vidl~tG---~vv~~l~feg~v~EifdV~vLPg~r~ 318 (335)
T TIGR03032 284 VAVIDLNSG---DVVHWLRFEGVIEEIYDVAVLPGVRR 318 (335)
T ss_pred EEEEECCCC---CEEEEEEeCCceeEEEEEEEecCCCC
Confidence 677888888 66666653 4567778877766554
No 90
>KOG0318|consensus
Probab=96.97 E-value=1.3 Score=52.38 Aligned_cols=194 Identities=12% Similarity=0.040 Sum_probs=123.4
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+++.+++..+.+..||-.+ ..|.|..-++..|...............+|+.. .++.|| +-...+.+.+.++.+..-
T Consensus 320 nK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~-t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 320 NKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELF-TIGWDDTLRVISLKDNGY 396 (603)
T ss_pred ccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeec-CCCcEE-EEecCCeEEEEecccCcc
Confidence 45778999999988777665 788898888665554444333334467899988 346665 445567888888854322
Q ss_pred EE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1124 KI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1124 ~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.- +..--.+|.++|+.+..+.+..+-... |.... +.+.. ..+.. -..|.++|+.+++..+-+- ...
T Consensus 397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~--------iv~l~-~~~~~-~~~~~-~y~~s~vAv~~~~~~vaVG-G~D 464 (603)
T KOG0318|consen 397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISD--------IVLLQ-DQTKV-SSIPI-GYESSAVAVSPDGSEVAVG-GQD 464 (603)
T ss_pred cccceeecCCCceeEEEcCCCCEEEEEecCc--------EEEEe-cCCcc-eeecc-ccccceEEEcCCCCEEEEe-ccc
Confidence 11 222236899999999777888887654 43332 12121 12222 2567899999877766554 456
Q ss_pred CeEEEEecCCCceEEE---Ee-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1202 KRIEYCDFFGRSRKIV---IS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~---~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++|..+.+.|...... .. ...+..|++ ++++.+|-.+| .+++|...+..+.
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~a~iT~vay-----Spd~~yla~~D-a~rkvv~yd~~s~ 519 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHRAAITDVAY-----SPDGAYLAAGD-ASRKVVLYDVASR 519 (603)
T ss_pred ceEEEEEecCCcccceeeeecccCCceEEEE-----CCCCcEEEEec-cCCcEEEEEcccC
Confidence 7799999988653222 22 566677777 55666777777 4456666665554
No 91
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.94 E-value=1.3 Score=51.77 Aligned_cols=132 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred eEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCC
Q psy5806 1102 NIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAF 1181 (1332)
Q Consensus 1102 ~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~ 1181 (1332)
.+-+.......+.+.+.+|...+.+..++....+++|+|...++-.++.. -.|+.++++..+.+.+-.+.-..
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr-------~el~vididngnv~~idkS~~~l 445 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR-------FELWVIDIDNGNVRLIDKSEYGL 445 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc-------eEEEEEEecCCCeeEecccccce
Confidence 44455666778999999999888888899999999999965667777643 36999999998888776655556
Q ss_pred cceEEEecCCCEEEEEEcC---CCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEEC
Q psy5806 1182 PNELAIDFKQRRLFWADST---NKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~---~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
..++++.+..+.|=++-.. +..|..+|++|...-.+.. ..+-++=|+ |+++.+||+...
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaF-----D~d~ryLYfLs~ 508 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAF-----DPDGRYLYFLSA 508 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCccc-----CCCCcEEEEEec
Confidence 6677777777666555432 5678888888865444433 666677777 778999999864
No 92
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.09 Score=64.36 Aligned_cols=175 Identities=12% Similarity=0.014 Sum_probs=108.8
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
+|...+.+ |.+...+. .+.......++.+.++.|+++... ...|.+.++.+..++.+......-..++++|...+|
T Consensus 185 ~i~i~d~d-g~~~~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 185 EVRVADYD-GFNQFIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEECCC-CCCceEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 45555654 55544433 233345678888888888876433 347888898865444433221223468899977788
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc--CCCeEEEEecCCCceEEEEeeccc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS--TNKRIEYCDFFGRSRKIVISKVAP 1223 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~--~~~~I~~~d~dG~~~~~~~~~~~P 1223 (1332)
+++.... +...|+..++++.....+... -......++.+++++|+++-. +.-.|+.++.+|...+.+-...
T Consensus 263 a~~~~~~----g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-- 335 (429)
T PRK01742 263 AFASSKD----GVLNIYVMGANGGTPSQLTSG-AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-- 335 (429)
T ss_pred EEEEecC----CcEEEEEEECCCCCeEeeccC-CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--
Confidence 8875322 135699999988776665442 233456888999998887743 3446788787776554432121
Q ss_pred ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1224 YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1224 ~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+++ .+++.+|+++.. ..|.+++..+|
T Consensus 336 ~~~~~-----SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 336 YSAQI-----SADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred CCccC-----CCCCCEEEEEcC--CCEEEEECCCC
Confidence 23344 346777877754 56777888776
No 93
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.037 Score=65.10 Aligned_cols=183 Identities=9% Similarity=0.005 Sum_probs=111.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCC-------------CeEEEEECC------CCCCceeEeecCCCCceeeEEEecCCeEE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRS-------------GNLRTFDMS------DSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~-------------~~I~~~~l~------~g~~~~~i~~~~~~~p~glAvDw~~~~LY 1104 (1332)
.++-..|.|++.+ +||++-... ++|.+++.. +......+.+.+..+|.||++++.++.||
T Consensus 176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 4556789999998 999985333 444444322 22233557778999999999999999999
Q ss_pred EEcCCCceEEEEeeCCceEEEEecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-----
Q psy5806 1105 YIDSQMHTINVARSDGQHKKILVND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----- 1177 (1332)
Q Consensus 1105 ~td~~~~~I~v~~ldG~~~~~~~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----- 1177 (1332)
.++.+...+ +-+.....+..+ ...| +.||-.... ++ ...++.....+...
T Consensus 255 ~~e~g~d~~----~~~Deln~i~~G~nYGWP----------~~~~G~~~~------g~---~~~~~~~~~~~~~p~~~~~ 311 (399)
T COG2133 255 TTEHGPDAL----RGPDELNSIRPGKNYGWP----------YAYFGQNYD------GR---AIPDGTVVAGAIQPVYTWA 311 (399)
T ss_pred EEecCCCcc----cCcccccccccCCccCCc----------eeccCcccC------cc---ccCCCcccccccCCceeec
Confidence 998877555 111111112111 1112 122211000 11 11112222111111
Q ss_pred CCCCcceEEEecCC------CEEEEEEcCCCeEEEEecCCCceEEEEe------ecccceEEEecCCccccccEEEEEEC
Q psy5806 1178 DLAFPNELAIDFKQ------RRLFWADSTNKRIEYCDFFGRSRKIVIS------KVAPYGLSVRQSPGKAFIVELYWTDW 1245 (1332)
Q Consensus 1178 ~l~~p~glaiD~~~------~~LY~~d~~~~~I~~~d~dG~~~~~~~~------~~~P~glav~~~~~~~~~~~lYwtd~ 1245 (1332)
.-..|.||++-.-+ +.||++.-..-.+.+.+.+|..+.++.. ...|.++++ +.+|.||+++-
T Consensus 312 ~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v------~~DGallv~~D 385 (399)
T COG2133 312 PHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAV------APDGALLVLTD 385 (399)
T ss_pred cccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEE------CCCCeEEEeec
Confidence 11346788876322 6899988777778888999885554443 369999999 67889999887
Q ss_pred C-CCEEEEEEec
Q psy5806 1246 E-AMSVVIAREK 1256 (1332)
Q Consensus 1246 ~-~~~V~~~~~~ 1256 (1332)
. +++|+|+...
T Consensus 386 ~~~g~i~Rv~~~ 397 (399)
T COG2133 386 QGDGRILRVSYA 397 (399)
T ss_pred CCCCeEEEecCC
Confidence 6 7799998754
No 94
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.90 E-value=0.29 Score=57.37 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=86.4
Q ss_pred EEEcCC--CceEEEEeeCCce--EEE-------EecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEEEec--CC
Q psy5806 1104 YYIDSQ--MHTINVARSDGQH--KKI-------LVNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEKVYL--DG 1168 (1332)
Q Consensus 1104 Y~td~~--~~~I~v~~ldG~~--~~~-------~~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r~~l--dG 1168 (1332)
..++.. .++|.++.+++.. .+. +.+++..|+|+++ +|..|.+|..-.+. .+.+....| ++
T Consensus 118 vas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k-----~G~~~Qy~L~~~~ 192 (381)
T PF02333_consen 118 VASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK-----DGRVEQYELTDDG 192 (381)
T ss_dssp EEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET-----TSEEEEEEEEE-T
T ss_pred EEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecC-----CceEEEEEEEeCC
Confidence 445654 3678888887432 111 2345667999998 46667666554332 244555555 33
Q ss_pred Cc--eEEEEec--CCCCcceEEEecCCCEEEEEEcCCCeEEEEecC---CCceEEEEe------ecccceEEEecCCccc
Q psy5806 1169 SY--RTVLVEE--DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF---GRSRKIVIS------KVAPYGLSVRQSPGKA 1235 (1332)
Q Consensus 1169 ~~--~~~l~~~--~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d---G~~~~~~~~------~~~P~glav~~~~~~~ 1235 (1332)
.. .-.++.+ --..|.|+++|.+.++||+++... -|++++.+ +..++.+.. .....||++. +..+
T Consensus 193 ~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly--~~~~ 269 (381)
T PF02333_consen 193 DGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALY--YGSD 269 (381)
T ss_dssp TSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEE--E-CC
T ss_pred CCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEE--ecCC
Confidence 32 2223221 135799999999999999999664 69999987 334555533 3467899991 1112
Q ss_pred cccEEEEEECCCCEEEEEEecCC
Q psy5806 1236 FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1236 ~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
-.+||.+++.++++...++..+.
T Consensus 270 g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 270 GKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp C-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCeEEEEEcCCCCeEEEEecCCC
Confidence 25899999999999988887653
No 95
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.46 Score=52.45 Aligned_cols=218 Identities=15% Similarity=0.157 Sum_probs=126.5
Q ss_pred cceEEEEee-cceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec--CC
Q psy5806 1012 REFLLYTSR-FGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM--ND 1088 (1332)
Q Consensus 1012 ~~~ll~~~~-~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~--~~ 1088 (1332)
+++..++.- .. ++-+++..++.....-.. .+. -.+--++..++..|++|...+ ...+++.+.+.......- ..
T Consensus 96 e~yvyvad~ssG-L~IvDIS~P~sP~~~~~l-nt~-gyaygv~vsGn~aYVadlddg-fLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 96 EEYVYVADWSSG-LRIVDISTPDSPTLIGFL-NTD-GYAYGVYVSGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred ccEEEEEcCCCc-eEEEeccCCCCcceeccc-cCC-ceEEEEEecCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCC
Confidence 567766653 34 777777655433211111 110 122223667899999998665 455677765555443321 12
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEecCCC--CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVNDLM--EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~~~--~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
+..+.+|+. ++.-|++....+ +.+.++...+ ++.+..-.- ..+++-+.+ .+.|.++.++ -+..++
T Consensus 172 ~d~~~v~IS--Gn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~e-------gvlivd 239 (370)
T COG5276 172 GDTHDVAIS--GNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDE-------GVLIVD 239 (370)
T ss_pred CCceeEEEe--cCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEccc-------ceEEEe
Confidence 234678888 999999987654 4456665333 332322111 345555555 4888888665 366667
Q ss_pred cCCCceEEEEe-cCCCCcceE-EEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-----ecccceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVE-EDLAFPNEL-AIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-----KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~-~~l~~p~gl-aiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-----~~~P~glav~~~~~~~~~~ 1238 (1332)
.+|.....++. -+-..|.++ ++-..+++.|++|...+ +.-+|.....-..+.+ +....||.+ +++
T Consensus 240 ~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~a-------y~~ 311 (370)
T COG5276 240 VSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRA-------YGN 311 (370)
T ss_pred cCCCCCceEeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEE-------ecC
Confidence 77765444432 223445555 23336899999986543 4444443222122222 557789999 999
Q ss_pred EEEEEECCCCEEEEE
Q psy5806 1239 ELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~ 1253 (1332)
++|++|.+++.|.-+
T Consensus 312 y~yiadkn~g~vV~~ 326 (370)
T COG5276 312 YNYIADKNTGAVVDA 326 (370)
T ss_pred eeEeccCCceEEEeC
Confidence 999999988877644
No 96
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.83 E-value=0.45 Score=53.14 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=102.9
Q ss_pred CCCccccCCCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCC--CCcccccCC--ccc-eEEEEEe--CCCcEE
Q psy5806 987 PTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADL--LPVTLPFPE--YMS-SIFFDYH--YSKNLI 1059 (1332)
Q Consensus 987 p~~~~C~Cp~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~--~~~~~pi~~--~~~-~~~id~d--~~~~~l 1059 (1332)
|.+-+--|..+|.+...+++ .+..||..+.... |..-...-... .....-+.. ... -.|+++- ...+.|
T Consensus 79 PTGiVfN~~~~F~vt~~g~~---~~a~Fif~tEdGT-isaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L 154 (336)
T TIGR03118 79 PTGQVFNGSDTFVVSGEGIT---GPSRFLFVTEDGT-LSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL 154 (336)
T ss_pred ccEEEEeCCCceEEcCCCcc---cceeEEEEeCCce-EEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE
Confidence 34444445566766554443 1345655555554 55433211111 010111111 111 2355554 447899
Q ss_pred EEEeCCCCeEEEEECCCCCCceeEee-----c---CCCCceeeEEEecCCeEEEEc----C---------CCceEEEEee
Q psy5806 1060 YFADMRSGNLRTFDMSDSTRIKPIPL-----M---NDTIRDNFVIDWVANNIYYID----S---------QMHTINVARS 1118 (1332)
Q Consensus 1060 Y~sd~~~~~I~~~~l~~g~~~~~i~~-----~---~~~~p~glAvDw~~~~LY~td----~---------~~~~I~v~~l 1118 (1332)
|-+|..+++|-.++ ++...+... . ..-.|.+|.- ++++|||+- . ..+-|.++++
T Consensus 155 YaadF~~g~IDVFd---~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~ 229 (336)
T TIGR03118 155 YAANFRQGRIDVFK---GSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL 229 (336)
T ss_pred EEeccCCCceEEec---CccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcC
Confidence 99999999998876 444332221 0 1125667755 499999982 1 2357999999
Q ss_pred CCceEEEEe--cCCCCceEEEEcCC-----CcEEEEEecCCCCCCCCCcEEEEecC-CCceEEE
Q psy5806 1119 DGQHKKILV--NDLMEPLAIAVYPR-----RGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVL 1174 (1332)
Q Consensus 1119 dG~~~~~~~--~~~~~P~~iavdp~-----~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l 1174 (1332)
+|...+.+. ..++.|.+||+.|. .|.|.+-+.|. ++|-..+.. |...-.|
T Consensus 230 ~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGD------G~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 230 NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGD------GTINAYDPQSGAQLGQL 287 (336)
T ss_pred CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCC------ceeEEecCCCCceeeee
Confidence 999877643 36899999999884 67888998886 789988874 5543333
No 97
>KOG2397|consensus
Probab=96.49 E-value=0.002 Score=75.11 Aligned_cols=72 Identities=24% Similarity=0.415 Sum_probs=57.4
Q ss_pred CCEEecCC-CEEEeeeecCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCcc
Q psy5806 62 DEHRCTTG-HCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKY 140 (1332)
Q Consensus 62 ~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~ 140 (1332)
..|.|.+| .-|+..++-|+.-||.|||||.+-. .|+.+ .|+|.+... ...=|+...
T Consensus 43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGts-ACpng-kF~C~N~G~---------------------~p~~i~ssr 99 (480)
T KOG2397|consen 43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTS-ACPNG-KFYCVNQGH---------------------QPKYIPSSR 99 (480)
T ss_pred cceeeccCCcccCHHHhccccccCCCCCCCCccc-cCCCC-ceeeeecCC---------------------Cceeeechh
Confidence 48999987 5899999999999999999995522 27766 999998421 234567778
Q ss_pred ccCCCCCCCCCCCCCC
Q psy5806 141 LCDGKKHCPRGEEGPD 156 (1332)
Q Consensus 141 ~Cdg~~dC~dg~de~d 156 (1332)
|=||+.||-||+||.+
T Consensus 100 V~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 100 VNDGICDCCDGSDEYL 115 (480)
T ss_pred ccCcccccccCCCCcc
Confidence 8899999999999954
No 98
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=96.48 E-value=0.0019 Score=43.27 Aligned_cols=21 Identities=38% Similarity=0.961 Sum_probs=19.6
Q ss_pred CceeeCCCCccccCCCCcccc
Q psy5806 684 GIRCVCPAGNLLREDRRTCSE 704 (1332)
Q Consensus 684 ~~~C~Cp~g~~l~~d~~tC~~ 704 (1332)
+|+|.|+.||+|.+|+++|..
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~D 21 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCED 21 (24)
T ss_pred CEEeeCCCCCcCCCCCCcccc
Confidence 589999999999999999985
No 99
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.41 E-value=0.37 Score=58.84 Aligned_cols=187 Identities=11% Similarity=0.089 Sum_probs=112.0
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCC--eEEEE--ECCCC--CCceeEeecCCCCceeeEEE
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG--NLRTF--DMSDS--TRIKPIPLMNDTIRDNFVID 1097 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~--~I~~~--~l~~g--~~~~~i~~~~~~~p~glAvD 1097 (1332)
|..++++...... +...++ ......+++++++|.|+....+ .|+.. ++..+ .....+.....+.....++.
T Consensus 213 I~~~~l~~g~~~~-lt~~~g--~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 213 IFLGSLENPAGKK-ILALQG--NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred EEEEECCCCCceE-eecCCC--CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 6666665443221 112222 2345688999989988764322 45553 44432 12233332222333456888
Q ss_pred ecCCeEEEEcCC--CceEEEEeeCC--ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE
Q psy5806 1098 WVANNIYYIDSQ--MHTINVARSDG--QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV 1173 (1332)
Q Consensus 1098 w~~~~LY~td~~--~~~I~v~~ldG--~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~ 1173 (1332)
+.++.|+++... ...|.++++++ ...+.+..........+.+|...+|+++.... ....|+..++++...+.
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK----GVRQICVYDLATGRDYQ 365 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCC----CCcEEEEEECCCCCeEE
Confidence 888888776432 33577777763 22333433323446678999888888875432 23579999998888776
Q ss_pred EEecCCCCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEE
Q psy5806 1174 LVEEDLAFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1174 l~~~~l~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~ 1218 (1332)
+... .......++.++++.||++... ...|+.++++|...+.+.
T Consensus 366 Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 366 LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 6543 2344567888889999887543 456888898877655444
No 100
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.35 E-value=0.083 Score=65.02 Aligned_cols=150 Identities=11% Similarity=-0.021 Sum_probs=96.5
Q ss_pred CCceeeEEEecCCeEEEEcCC---CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQ---MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~---~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
++|.++++++.++.+|++.++ ...+..++..-....++ ++-++.-++.+...+.|+. . ++|-.++
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv---fni~~iea~vkdGK~~~V~---g------n~V~VID 302 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV---FNIARIEEAVKAGKFKTIG---G------SKVPVVD 302 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE---EchHHHHHhhhCCCEEEEC---C------CEEEEEE
Confidence 389999999999999999743 23343333321111111 0111111222223344442 2 3566665
Q ss_pred cCC-----CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc---------eEEEEe----ecccceEE
Q psy5806 1166 LDG-----SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS---------RKIVIS----KVAPYGLS 1227 (1332)
Q Consensus 1166 ldG-----~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~---------~~~~~~----~~~P~gla 1227 (1332)
... ......+..+ ..|.|++++++++.||.+...++.+..+|..-.. |.+++. +..|...+
T Consensus 303 ~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTa 381 (635)
T PRK02888 303 GRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTA 381 (635)
T ss_pred CCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEE
Confidence 433 3334445544 6799999999999999999999999999996422 333433 88999999
Q ss_pred EecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1228 VRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1228 v~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+ +..|+.|.|-.-...|.+.|...
T Consensus 382 F------Dg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 382 F------DGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred E------CCCCCEEEeEeecceeEEEehHH
Confidence 9 44568999999889999998764
No 101
>PTZ00421 coronin; Provisional
Probab=96.32 E-value=2.2 Score=52.95 Aligned_cols=233 Identities=9% Similarity=-0.049 Sum_probs=121.0
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC------ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR------IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~------~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
.+.+++|++.++.+..+-...++|...++..+.. ....+......+..|++.+.+.++.++-...+.|.++++.
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 4679999985444555555788898888764321 1111112233567788887777777777778899999997
Q ss_pred C-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC-CCcceEEEecCCCEEEEE
Q psy5806 1120 G-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL-AFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1120 G-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l-~~p~glaiD~~~~~LY~~ 1197 (1332)
. +....+..-.....+|+.+| .|.++.+-... ..|...++.......-+...- .....+...+..+.|.-+
T Consensus 157 tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~D------g~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKD------KKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCC------CEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 4 43333433335678999999 55665654433 456666664333221121110 111223333344444432
Q ss_pred E---cCCCeEEEEecCCCc-eEEEEe--ecccceE-EEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecC
Q psy5806 1198 D---STNKRIEYCDFFGRS-RKIVIS--KVAPYGL-SVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270 (1332)
Q Consensus 1198 d---~~~~~I~~~d~dG~~-~~~~~~--~~~P~gl-av~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~ 1270 (1332)
- ...+.|...|+.... ...... ......+ .+ +..+..||.+-.+.+.|...+..++ .........
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-----d~d~~~L~lggkgDg~Iriwdl~~~---~~~~~~~~~ 301 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-----DEDTNLLYIGSKGEGNIRCFELMNE---RLTFCSSYS 301 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-----cCCCCEEEEEEeCCCeEEEEEeeCC---ceEEEeecc
Confidence 1 123556666664221 111111 1111111 22 2245567776666788888888776 433333222
Q ss_pred CCCeeeEEEEeCCCCCCCCCCCC
Q psy5806 1271 QEDFLNIKAISASKQLTWNPCAQ 1293 (1332)
Q Consensus 1271 ~~~~~~i~~~~~~~q~~~n~C~~ 1293 (1332)
...+..-..+.+.+..-.+-|+.
T Consensus 302 s~~~~~g~~~~pk~~~dv~~~Ei 324 (493)
T PTZ00421 302 SVEPHKGLCMMPKWSLDTRKCEI 324 (493)
T ss_pred CCCCCcceEecccccccccceee
Confidence 33333333344434344455553
No 102
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.21 E-value=0.0024 Score=50.00 Aligned_cols=39 Identities=26% Similarity=0.816 Sum_probs=33.0
Q ss_pred CCcccCCCCCCc--cccccCCCCccccCCCCeeEccCCccc
Q psy5806 969 PNACGSNNGGCS--HLCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 969 ~n~C~~~nGgCs--hlCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
.|+|+.....|. +.|++++++|.|.|+.||.+..++++|
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence 467877777786 899999999999999999987777766
No 103
>KOG1446|consensus
Probab=96.20 E-value=2.9 Score=46.79 Aligned_cols=193 Identities=14% Similarity=0.112 Sum_probs=115.4
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAI 1136 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~i 1136 (1332)
.-||-+...+.+|+-++|.+-.-.+.+. -.-.....|++.+++ ..|.+.+....|+.+++.-..-..+.. +..+--.
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-~~~~pi~ 146 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-LSGRPIA 146 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe-cCCCcce
Confidence 3444444456788888876322222221 112367899999876 788888888899999998443333222 2355668
Q ss_pred EEcCCCcEEEEEecCCCCCCCCCcEEEEec--C-CCceEEE-Ee-cCCCCcceEEEecCCCEEEEEEcCCCeEEEEec-C
Q psy5806 1137 AVYPRRGLLFYSHWGLYDNSPTTKIEKVYL--D-GSYRTVL-VE-EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF-F 1210 (1332)
Q Consensus 1137 avdp~~g~Lywtd~~~~~~~~~~~I~r~~l--d-G~~~~~l-~~-~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~-d 1210 (1332)
|+|| .|.+|-+..+. ..|.-.++ - ..--+.+ +. +....-+.|.+.++++-|.++.. .+.|..+|. +
T Consensus 147 AfDp-~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~ 218 (311)
T KOG1446|consen 147 AFDP-EGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFD 218 (311)
T ss_pred eECC-CCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccC
Confidence 9999 78888776654 35555554 2 2222222 22 22344467888888888888754 445666654 6
Q ss_pred CCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEec
Q psy5806 1211 GRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRS 1269 (1332)
Q Consensus 1211 G~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~ 1269 (1332)
|.-...+-. +.-|.+-+. . -++....+-...++|...+..+| ..+...+.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~f-----t-Pds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~ 272 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATF-----T-PDSKFVLSGSDDGTIHVWNLETG---KKVAVLRG 272 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEE-----C-CCCcEEEEecCCCcEEEEEcCCC---cEeeEecC
Confidence 764333332 333433333 1 24444555668899999999998 65555554
No 104
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.04 E-value=1.7 Score=48.00 Aligned_cols=174 Identities=16% Similarity=0.122 Sum_probs=102.2
Q ss_pred CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc-ee-eEEEecCCeEEEEcCCCceEEEEe-eCCceEEEE-ecC-
Q psy5806 1055 SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR-DN-FVIDWVANNIYYIDSQMHTINVAR-SDGQHKKIL-VND- 1129 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p-~g-lAvDw~~~~LY~td~~~~~I~v~~-ldG~~~~~~-~~~- 1129 (1332)
.+++||..+ ..+.|+.+++.+|....... ...+ .. .+++ ++.||+..... .|..++ .+|+..-.. ...
T Consensus 35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~---~~~~~~~~~~~~--~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFD---LPGPISGAPVVD--GGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEE-TTSEEEEEETTTSEEEEEEE---CSSCGGSGEEEE--TTEEEEEETTS-EEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEc-CCCEEEEEECCCCCEEEEee---ccccccceeeec--cccccccccee-eeEecccCCcceeeeeccccc
Confidence 456788885 77788888876554332222 2222 11 3555 88999887444 888888 457754432 111
Q ss_pred ----CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEEecCCCCcc-------------eEEEecCC
Q psy5806 1130 ----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLVEEDLAFPN-------------ELAIDFKQ 1191 (1332)
Q Consensus 1130 ----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~~~~l~~p~-------------glaiD~~~ 1191 (1332)
...+...+++ ++.+|..... ..|..+++. |...-.. .+..|. .+.+ .+
T Consensus 108 ~~~~~~~~~~~~~~--~~~~~~~~~~-------g~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~--~~ 173 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD--GDRLYVGTSS-------GKLVALDPKTGKLLWKY---PVGEPRGSSPISSFSDINGSPVI--SD 173 (238)
T ss_dssp CTCSTB--SEEEEE--TTEEEEEETC-------SEEEEEETTTTEEEEEE---ESSTT-SS--EEEETTEEEEEEC--CT
T ss_pred cccccccccCceEe--cCEEEEEecc-------CcEEEEecCCCcEEEEe---ecCCCCCCcceeeecccccceEE--EC
Confidence 2234445555 5677777743 358888864 4332222 122221 2233 35
Q ss_pred CEEEEEEcCCCeEEEEecCCCceEEEEeecccce-EEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1192 RRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYG-LSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1192 ~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~g-lav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++||.+... +++..+|.....+.--.....+.+ +.. .++.||+++ ..+.|+.+|+.+|
T Consensus 174 ~~v~~~~~~-g~~~~~d~~tg~~~w~~~~~~~~~~~~~-------~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 174 GRVYVSSGD-GRVVAVDLATGEKLWSKPISGIYSLPSV-------DGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp TEEEEECCT-SSEEEEETTTTEEEEEECSS-ECECEEC-------CCTEEEEEE-TTTEEEEEETTTT
T ss_pred CEEEEEcCC-CeEEEEECCCCCEEEEecCCCccCCcee-------eCCEEEEEe-CCCEEEEEECCCC
Confidence 599998654 446666776554332111444555 556 899999999 8899999999998
No 105
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.03 E-value=1.8 Score=49.84 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=109.7
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCccc--ccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTL--PFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~--pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~ 1089 (1332)
..|+++.+-.. ..+|++-+....+++. ++|+ =.+.|-..++. |.+=-..|++..+.|+..... ....+..-
T Consensus 106 gk~~~V~N~TP-a~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~F 178 (342)
T PF06433_consen 106 GKFLYVQNFTP-ATSVTVVDLAAKKVVGEIDTPG----CWLIYPSGNRG-FSMLCGDGSLLTVTLDADGKE-AQKSTKVF 178 (342)
T ss_dssp SSEEEEEEESS-SEEEEEEETTTTEEEEEEEGTS----EEEEEEEETTE-EEEEETTSCEEEEEETSTSSE-EEEEEEES
T ss_pred CcEEEEEccCC-CCeEEEEECCCCceeeeecCCC----EEEEEecCCCc-eEEEecCCceEEEEECCCCCE-eEeecccc
Confidence 56777776554 4455544343444333 2332 12234333444 556668899999998842222 22111111
Q ss_pred Cc------eeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE--ecC--------CCCceE---EEEcCCCcEEEEEec
Q psy5806 1090 IR------DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL--VND--------LMEPLA---IAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1090 ~p------~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~--~~~--------~~~P~~---iavdp~~g~Lywtd~ 1150 (1332)
.| +.=+++..++++||... .+.|..+++.|...+.. ++- -=+|-| +|+++..++||+..-
T Consensus 179 ~~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh 257 (342)
T PF06433_consen 179 DPDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMH 257 (342)
T ss_dssp STTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEE
T ss_pred CCCCcccccccceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEec
Confidence 11 22344556778999776 46888899988765442 110 012433 999999999999852
Q ss_pred CCC-C--CCCCCcEEEEecCCCceEEEEecCCCC-cceEEEecCCC-EEEEEEcCCCeEEEEecC-CCceEEEEe
Q psy5806 1151 GLY-D--NSPTTKIEKVYLDGSYRTVLVEEDLAF-PNELAIDFKQR-RLFWADSTNKRIEYCDFF-GRSRKIVIS 1219 (1332)
Q Consensus 1151 ~~~-~--~~~~~~I~r~~ldG~~~~~l~~~~l~~-p~glaiD~~~~-~LY~~d~~~~~I~~~d~d-G~~~~~~~~ 1219 (1332)
.+. . ..+...|+.+++.-..|..-+. +.. ...|+|..+.+ +||-++..++.|..+|.. |+..+.+-.
T Consensus 258 ~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 258 QGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp E--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 221 1 1134568988887777665554 223 33788877554 677677777888888875 444444333
No 106
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=95.97 E-value=0.014 Score=41.17 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
..|.|||+| ..++||++|.++++|.++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 479999999 799999999999999764
No 107
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=95.95 E-value=0.016 Score=40.90 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=24.8
Q ss_pred CCCcceEEEecCCCEEEEEEcCCCeEEEE
Q psy5806 1179 LAFPNELAIDFKQRRLFWADSTNKRIEYC 1207 (1332)
Q Consensus 1179 l~~p~glaiD~~~~~LY~~d~~~~~I~~~ 1207 (1332)
+..|.||++| .++.||++|.++++|..+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3679999999 889999999999999863
No 108
>PTZ00420 coronin; Provisional
Probab=95.58 E-value=9.7 Score=47.91 Aligned_cols=233 Identities=8% Similarity=-0.046 Sum_probs=120.6
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ce------eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IK------PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~------~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
.+..++|++.++.+..+-...++|+..++..+.. .. ..+.........+++.+.+.++.++-...+.|.++++
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 4679999987555666666788998888764321 11 1122223457789999888888777666789999999
Q ss_pred CCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEE-----ecCCC
Q psy5806 1119 DGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAI-----DFKQR 1192 (1332)
Q Consensus 1119 dG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glai-----D~~~~ 1192 (1332)
.... ...+. ......+|+++|. |.++.+.... ..|...++.......-+...-.......+ ..+++
T Consensus 156 ~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s~D------~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 156 ENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTCVG------KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred CCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEecC------CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCC
Confidence 7433 33242 2356789999994 5555554322 45666676544322212111010011111 12233
Q ss_pred EEEEEEcCC---CeEEEEecCCC-ceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1193 RLFWADSTN---KRIEYCDFFGR-SRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1193 ~LY~~d~~~---~~I~~~d~dG~-~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
.|.-+-... ..|...|+... ....... ..++..|.. .+ |+..+.+|.+-.+.+.|+..+...+ . ...+
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p--~~-D~~tg~l~lsGkGD~tIr~~e~~~~---~-~~~l 300 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIP--HY-DESTGLIYLIGKGDGNCRYYQHSLG---S-IRKV 300 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEE--ee-eCCCCCEEEEEECCCeEEEEEccCC---c-EEee
Confidence 333221111 13555555421 1111112 222223221 11 2335678888888888888887655 2 2233
Q ss_pred ecC-CCCeeeEEEEeCCCCCCCCCCCC
Q psy5806 1268 RSN-QEDFLNIKAISASKQLTWNPCAQ 1293 (1332)
Q Consensus 1268 ~~~-~~~~~~i~~~~~~~q~~~n~C~~ 1293 (1332)
... ...+..-..|.+.+..-++-|+.
T Consensus 301 ~~~~s~~p~~g~~f~Pkr~~dv~~cEi 327 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQICDVYKCEI 327 (568)
T ss_pred cccccCCCccceEEccccccCchhhhH
Confidence 222 12333333455545455566663
No 109
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=95.56 E-value=0.0092 Score=66.04 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=34.9
Q ss_pred CccccccCC--CCcceeeeccCCCceEEeCCCCceecCCCCC
Q psy5806 389 QPNYQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKS 428 (1332)
Q Consensus 389 qp~~~n~C~--~g~CshlCl~~~~~~~C~C~~G~~L~~d~~t 428 (1332)
.+.+.++|. +..|.|.|++.+++|.|.|+.||+|.+|+++
T Consensus 183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence 345678897 6789999999999999999999999998875
No 110
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.55 E-value=0.014 Score=44.63 Aligned_cols=35 Identities=31% Similarity=0.938 Sum_probs=28.3
Q ss_pred cccCCC-Cccee--eeccCCCceEEeCCCCceecCCCCCcC
Q psy5806 393 QSHCAP-KVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCS 430 (1332)
Q Consensus 393 ~n~C~~-g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~ 430 (1332)
.++|.. ..|.+ .|++..++|+|.|+.||. ++++|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGSYRCECPPGYT---DGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCCeEeECCCCCc---cCCcCC
Confidence 466765 57776 899999999999999997 677773
No 111
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.34 E-value=3 Score=46.48 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=99.6
Q ss_pred ceeeEEEecCCeEEEEcCCC--ceEEEEeeC-CceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1091 RDNFVIDWVANNIYYIDSQM--HTINVARSD-GQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~--~~I~v~~ld-G~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
-.||.++ ..+.||-+.... ..|++.+++ |+.... +. ....--||++. +..||---|.+ +.....+
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~--~d~l~qLTWk~------~~~f~yd 116 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL--GDKLYQLTWKE------GTGFVYD 116 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE--TTEEEEEESSS------SEEEEEE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE--CCEEEEEEecC------CeEEEEc
Confidence 4899994 278999986554 468888887 444333 32 22345788887 45999999987 7788888
Q ss_pred cCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCc--eEEEEe-eccc----ceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRS--RKIVIS-KVAP----YGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~--~~~~~~-~~~P----~glav~~~~~~~~~~ 1238 (1332)
.+.-....-+.-. ...-||+-| ++.||.+| ++.+|...|...-. +++-+. ...| .-|.. .+|
T Consensus 117 ~~tl~~~~~~~y~-~EGWGLt~d--g~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-------i~G 185 (264)
T PF05096_consen 117 PNTLKKIGTFPYP-GEGWGLTSD--GKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-------ING 185 (264)
T ss_dssp TTTTEEEEEEE-S-SS--EEEEC--SSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-------ETT
T ss_pred cccceEEEEEecC-CcceEEEcC--CCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEE-------EcC
Confidence 8754433333321 344489854 78899998 57799999986432 333333 3344 34677 789
Q ss_pred EEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1239 ELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
+||=--|.+..|.++|+.+| .....+
T Consensus 186 ~IyANVW~td~I~~Idp~tG---~V~~~i 211 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETG---KVVGWI 211 (264)
T ss_dssp EEEEEETTSSEEEEEETTT----BEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCC---eEEEEE
Confidence 99888899999999999999 555544
No 112
>KOG3509|consensus
Probab=95.17 E-value=0.013 Score=74.91 Aligned_cols=101 Identities=28% Similarity=0.699 Sum_probs=83.4
Q ss_pred ceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCccccccc-----CCCCC
Q psy5806 27 ACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT-----CDAQK 101 (1332)
Q Consensus 27 ~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~-----C~~~~ 101 (1332)
.|......|++..||.+-+|+.+++. ....|++.++.|.+++|....+.||...+|.+++++.+|..+ |.+.
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~- 78 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPA--IGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPT- 78 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCcc--ccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCc-
Confidence 57778899999999999999988732 346789999999999999999999999999999988887542 4444
Q ss_pred ccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCCCCCCCCC
Q psy5806 102 EFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEG 154 (1332)
Q Consensus 102 ~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~dC~dg~de 154 (1332)
.+.|.+ ...|..+..-|||..+|.++++|
T Consensus 79 ~~~c~~------------------------~~~~~~~~~~~~g~~~~~~~~~~ 107 (964)
T KOG3509|consen 79 ETQCRD------------------------RLRCNPQSFQCDGTNDCKDGSDE 107 (964)
T ss_pred cccccc------------------------chhcCCccccccCCCCCCccchh
Confidence 566655 22466778899999999999988
No 113
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.94 E-value=1.9 Score=50.71 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred cCCCCceeeEEE--ecCCeEEEE-cCCCceEEEEeeC----CceEEE-Ee--cCCCCceEEEEcCCCcEEEEEecCCCCC
Q psy5806 1086 MNDTIRDNFVID--WVANNIYYI-DSQMHTINVARSD----GQHKKI-LV--NDLMEPLAIAVYPRRGLLFYSHWGLYDN 1155 (1332)
Q Consensus 1086 ~~~~~p~glAvD--w~~~~LY~t-d~~~~~I~v~~ld----G~~~~~-~~--~~~~~P~~iavdp~~g~Lywtd~~~~~~ 1155 (1332)
.....|.||++= ..++.+|+- ....+.++.+.|. |..... +. .....|-|++||...|+||+.+...
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~--- 229 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEEDV--- 229 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETTT---
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCcc---
Confidence 455678999984 456667763 3334677777663 322111 11 2235899999999999999999764
Q ss_pred CCCCcEEEEecC---CCceEEEEec---CC-CCcceEEEec---CCCEEEEEEcCCCeEEEEecCCCc
Q psy5806 1156 SPTTKIEKVYLD---GSYRTVLVEE---DL-AFPNELAIDF---KQRRLFWADSTNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1156 ~~~~~I~r~~ld---G~~~~~l~~~---~l-~~p~glaiD~---~~~~LY~~d~~~~~I~~~d~dG~~ 1213 (1332)
-|+|...+ +..++.+... .+ ....||+|=. ..+.|..++.+.++...++..|.+
T Consensus 230 ----GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 230 ----GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp ----EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred ----EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 59999986 3334444221 12 4577999954 235799999999999999988764
No 114
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.67 E-value=10 Score=43.92 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=114.3
Q ss_pred EEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEEcCCCceEEEEeeC--CceEEE-
Q psy5806 1051 DYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYIDSQMHTINVARSD--GQHKKI- 1125 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~td~~~~~I~v~~ld--G~~~~~- 1125 (1332)
.+...++.+|+.+. ...+|..+++....-...+- .|.- +++=+-.+..+-... .+++..+.|| |+....
T Consensus 101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~-----~PGC~~iyP~~~~~F~~lC~-DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 101 ALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID-----TPGCWLIYPSGNRGFSMLCG-DGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp EE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE-----GTSEEEEEEEETTEEEEEET-TSCEEEEEETSTSSEEEEE
T ss_pred EEccCCcEEEEEccCCCCeEEEEECCCCceeeeec-----CCCEEEEEecCCCceEEEec-CCceEEEEECCCCCEeEee
Confidence 45788899999885 45679999987432222222 2322 333333556544333 4456666665 665422
Q ss_pred --EecCCCCce--EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCC---------Ccce---EEEec
Q psy5806 1126 --LVNDLMEPL--AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLA---------FPNE---LAIDF 1189 (1332)
Q Consensus 1126 --~~~~~~~P~--~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~---------~p~g---laiD~ 1189 (1332)
+....+.|. .=+++...+.+||.... +.|+.+++.|......-.-.+. .|.| +|++.
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYE-------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBTT-------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred ccccCCCCcccccccceECCCCeEEEEecC-------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc
Confidence 211222221 11233446788887654 4799999999875444221111 1443 79999
Q ss_pred CCCEEEEEEc----C-----CCeEEEEecCCCceEEEEeecccc-eEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1190 KQRRLFWADS----T-----NKRIEYCDFFGRSRKIVISKVAPY-GLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1190 ~~~~LY~~d~----~-----~~~I~~~d~dG~~~~~~~~~~~P~-glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
..++||+.=- + .-.|+.+|+....|..-+++.+|. +|+| |. +..-.||-++...+.++..|..+|
T Consensus 248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~V--sq--d~~P~L~~~~~~~~~l~v~D~~tG- 322 (342)
T PF06433_consen 248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAV--SQ--DDKPLLYALSAGDGTLDVYDAATG- 322 (342)
T ss_dssp TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEE--ES--SSS-EEEEEETTTTEEEEEETTT--
T ss_pred ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEE--cc--CCCcEEEEEcCCCCeEEEEeCcCC-
Confidence 9999998621 1 225899888766665555544444 8888 11 224468888888899999999988
Q ss_pred CcceEEEEe
Q psy5806 1260 GQWDVHLIR 1268 (1332)
Q Consensus 1260 ~~~~~~~~~ 1268 (1332)
+.+..+.
T Consensus 323 --k~~~~~~ 329 (342)
T PF06433_consen 323 --KLVRSIE 329 (342)
T ss_dssp ---EEEEE-
T ss_pred --cEEeehh
Confidence 5555444
No 115
>smart00181 EGF Epidermal growth factor-like domain.
Probab=94.46 E-value=0.04 Score=41.06 Aligned_cols=28 Identities=39% Similarity=0.936 Sum_probs=23.5
Q ss_pred CCC-Cccee-eeccCCCceEEeCCCCceec
Q psy5806 396 CAP-KVCSH-ICLPNKHRFTCQCPLGLTLS 423 (1332)
Q Consensus 396 C~~-g~Csh-lCl~~~~~~~C~C~~G~~L~ 423 (1332)
|.. ..|++ .|++..++|+|.|+.||.+.
T Consensus 2 C~~~~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASGGPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCcCCCCCCEEECCCCCeEeECCCCCccC
Confidence 554 56777 89999999999999999864
No 116
>KOG0315|consensus
Probab=94.38 E-value=7.4 Score=42.29 Aligned_cols=196 Identities=12% Similarity=-0.001 Sum_probs=116.8
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
+-.|...+..+.|-.+ ....|+.++++++....+....+. .+...+.|.-.++.+| +.++.+.+.+.++.-.....
T Consensus 43 VNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred eeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccch
Confidence 4456666666555443 456688888886555444333333 5777778876688887 66778899999986532222
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
..........|+++|..+.|+..|..+ .|..=++--. -...++.+.......|++++++.+|-=++ ..++.
T Consensus 120 ~~~~~spVn~vvlhpnQteLis~dqsg-------~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n-nkG~c 191 (311)
T KOG0315|consen 120 NYQHNSPVNTVVLHPNQTELISGDQSG-------NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN-NKGNC 191 (311)
T ss_pred hccCCCCcceEEecCCcceEEeecCCC-------cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec-CCccE
Confidence 222334567899999999999998654 4666666433 23345555666777899999888776554 45555
Q ss_pred EEEecCC-CceEEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1205 EYCDFFG-RSRKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1205 ~~~d~dG-~~~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
+.-++-+ .....+.+ --.-++|..+-|| ++....|-....+|+..+.++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP----d~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP----DVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECC----CCcEEEeecCCceEEEEecCC
Confidence 5555543 22333332 1112233332232 233344555666776666543
No 117
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.31 E-value=11 Score=42.13 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=117.1
Q ss_pred eEEEEEeCCCcEEEEEeCCCC--eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSG--NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~--~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
-.|+.|. .++.||-+....| +|+++++.+|......-.....-.+||++- +++||.-....+...+.+.+....
T Consensus 47 TQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 3688885 3468999987665 699999886544333332333357899998 899999888888888888874332
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE--EEecC---CCCcceEEEecCCCEEEEEE
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV--LVEED---LAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~--l~~~~---l~~p~glaiD~~~~~LY~~d 1198 (1332)
..+. -.....||+-|. ..|+.+|.. ++|+..+...-...- -|..+ +..-|-|.. .++.||=--
T Consensus 124 ~~~~-y~~EGWGLt~dg--~~Li~SDGS-------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANV 191 (264)
T PF05096_consen 124 GTFP-YPGEGWGLTSDG--KRLIMSDGS-------SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANV 191 (264)
T ss_dssp EEEE--SSS--EEEECS--SCEEEE-SS-------SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEE
T ss_pred EEEe-cCCcceEEEcCC--CEEEEECCc-------cceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEe
Confidence 2232 224679999774 478888843 578877764433211 22211 333444443 478888665
Q ss_pred cCCCeEEEEecCCCceEEEEe---e--------------cccceEEEecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1199 STNKRIEYCDFFGRSRKIVIS---K--------------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~~~~~~~---~--------------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
-.++.|.++|+.....+..+. + .-..|||. ++..++||+|--.=..++++..
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy-----d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY-----DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE-----ETTTTEEEEEETT-SEEEEEEE
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE-----eCCCCEEEEEeCCCCceEEEEE
Confidence 679999999997655555543 1 12468999 6678899999866677777764
No 118
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.98 E-value=14 Score=42.09 Aligned_cols=49 Identities=10% Similarity=0.199 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~ 1108 (1332)
+++||++|...++|.++++++|. .+.+. .--+.|.||++. ++.+|+.-+
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~-~e~Va-~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGK-FQPVA-FLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCc-EEEEE-ECCCCCccccee--CCEEEEEec
Confidence 57999999999999999976343 33333 445689999998 888887644
No 119
>KOG3509|consensus
Probab=93.87 E-value=0.044 Score=70.34 Aligned_cols=82 Identities=27% Similarity=0.570 Sum_probs=72.8
Q ss_pred cccCCCCCceecCCCCceEeCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEecCC-CEEEeeeecCCCCCCCCCCC
Q psy5806 11 GYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG-HCILKTWLCDGIPDCSLGED 89 (1332)
Q Consensus 11 ~~~~c~~~~f~C~~~~~Ci~~~~~CDg~~DC~dgsDE~~C~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsD 89 (1332)
....|.+.+|+|. +++|....|.||.+.+|.+++++.+|.....+..|.+.+++|.+- +|-+....|||.+||.|+++
T Consensus 28 ~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~ 106 (964)
T KOG3509|consen 28 IGSACSPNEFKCN-NPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSD 106 (964)
T ss_pred ccccCCcchhccC-CccccCchhhhccccccCCCCCcCCccccccccccCCcccccccchhcCCccccccCCCCCCccch
Confidence 3446889999998 999999999999999999999998886555667889999999976 79999999999999999999
Q ss_pred cccc
Q psy5806 90 ERNC 93 (1332)
Q Consensus 90 E~~C 93 (1332)
|..|
T Consensus 107 ~~~~ 110 (964)
T KOG3509|consen 107 EVGC 110 (964)
T ss_pred hccc
Confidence 9765
No 120
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.73 E-value=3.7 Score=48.21 Aligned_cols=165 Identities=14% Similarity=0.040 Sum_probs=94.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCe------EEEEECCC--CCCceeEee-------c-C------CCCceeeEEEecCC
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGN------LRTFDMSD--STRIKPIPL-------M-N------DTIRDNFVIDWVAN 1101 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~------I~~~~l~~--g~~~~~i~~-------~-~------~~~p~glAvDw~~~ 1101 (1332)
+....||+|++..+++|... ..+. ++.+.+.. +....+.+. . + .-.++|||+ ...+
T Consensus 19 ~GGlSgl~~~~~~~~~~avS-D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVS-DRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDG 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEE-CCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCC
Confidence 44567999997666655443 3333 66655442 111111110 0 0 116789999 5799
Q ss_pred eEEEEcCCC------ceEEEEeeCCceEEEE--ec-------------CCCCceEEEEcCCCcEEEEEecCCCC-CC-C-
Q psy5806 1102 NIYYIDSQM------HTINVARSDGQHKKIL--VN-------------DLMEPLAIAVYPRRGLLFYSHWGLYD-NS-P- 1157 (1332)
Q Consensus 1102 ~LY~td~~~------~~I~v~~ldG~~~~~~--~~-------------~~~~P~~iavdp~~g~Lywtd~~~~~-~~-~- 1157 (1332)
.+||++... .+|..++.+|.....+ -. .....-+||+.|....||.+....-. +. .
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 999999999 9999999998864332 11 12246789999976668887644311 11 1
Q ss_pred ------CCcEEEEecCC--Cc-eEEEEec-------CCCCcceEEEecCCCEEEEEEcC-------CCeEEEEecCC
Q psy5806 1158 ------TTKIEKVYLDG--SY-RTVLVEE-------DLAFPNELAIDFKQRRLFWADST-------NKRIEYCDFFG 1211 (1332)
Q Consensus 1158 ------~~~I~r~~ldG--~~-~~~l~~~-------~l~~p~glaiD~~~~~LY~~d~~-------~~~I~~~d~dG 1211 (1332)
..+|.+.+... .. .+-.+.. ....+..|+.- .+++||+.+.. ..+|..+++.+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 14677776653 11 1122221 12334444444 34558887765 45677777754
No 121
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.54 E-value=2.6 Score=49.47 Aligned_cols=118 Identities=20% Similarity=0.134 Sum_probs=73.8
Q ss_pred CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE-EecCC-------------CCcceEEEecCCCEEEEE
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL-VEEDL-------------AFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l-~~~~l-------------~~p~glaiD~~~~~LY~~ 1197 (1332)
.+-+|++ +..|.+||++.+.......++|.+++++|.....+ +...+ .-..|||+.+++++||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5569999 66999999987642233358999999999886655 33222 114489999999989988
Q ss_pred EcCC---------------CeEEEEecC--CC-ceEEEEee---------cccce-EEEecCCccccccEEEEEECC---
Q psy5806 1198 DSTN---------------KRIEYCDFF--GR-SRKIVISK---------VAPYG-LSVRQSPGKAFIVELYWTDWE--- 1246 (1332)
Q Consensus 1198 d~~~---------------~~I~~~d~d--G~-~~~~~~~~---------~~P~g-lav~~~~~~~~~~~lYwtd~~--- 1246 (1332)
-... -+|.++|.. |. ..+..... ..+.. +++ .++.||+....
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-------~d~~lLvLER~~~~ 237 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-------PDGRLLVLERDFSP 237 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-------CCCcEEEEEccCCC
Confidence 5442 356666664 21 22223221 12222 344 67778888865
Q ss_pred ----CCEEEEEEecC
Q psy5806 1247 ----AMSVVIAREKS 1257 (1332)
Q Consensus 1247 ----~~~V~~~~~~~ 1257 (1332)
..+|++++...
T Consensus 238 ~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 238 GTGNYKRIYRVDLSD 252 (326)
T ss_pred CccceEEEEEEEccc
Confidence 44566666543
No 122
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=93.29 E-value=0.031 Score=41.95 Aligned_cols=34 Identities=38% Similarity=0.879 Sum_probs=25.6
Q ss_pred ccCCCCCCcc--ccccCCCCccccCCCCeeEccCCccc
Q psy5806 972 CGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 972 C~~~nGgCsh--lCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
|..+||+|.. .|..++++++|.|+.||. .||..|
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEE--CCSTCE
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCc--cCCcCC
Confidence 6778899964 799999999999999998 456655
No 123
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=93.14 E-value=0.046 Score=60.44 Aligned_cols=38 Identities=29% Similarity=0.850 Sum_probs=34.3
Q ss_pred CCcccCCCCCCccccccCCCCccccCCCCeeEccCCcc
Q psy5806 969 PNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRS 1006 (1332)
Q Consensus 969 ~n~C~~~nGgCshlCl~~p~~~~C~Cp~g~~l~~d~~t 1006 (1332)
.++|...++.|.|.|..++++|.|+|+.||.|..|++|
T Consensus 187 ~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 187 PDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224 (224)
T ss_pred chhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence 68898888999999999999999999999999877654
No 124
>KOG1219|consensus
Probab=93.10 E-value=4.9 Score=55.54 Aligned_cols=31 Identities=32% Similarity=0.951 Sum_probs=24.5
Q ss_pred CccccccCCCCcce--eeeccCC--CceEEeCCCC
Q psy5806 389 QPNYQSHCAPKVCS--HICLPNK--HRFTCQCPLG 419 (1332)
Q Consensus 389 qp~~~n~C~~g~Cs--hlCl~~~--~~~~C~C~~G 419 (1332)
.|...|+|....|. ++|+..+ ..|.|.||.|
T Consensus 3642 Cp~~~~~C~~~pcp~~~~Cvs~~~~~~~~cVcP~g 3676 (4289)
T KOG1219|consen 3642 CPVETNQCAKSPCPAGNLCVSSVHNSTYTCVCPIG 3676 (4289)
T ss_pred CCcccCccccCCCcccCcccccccccceeEeccCc
Confidence 34457889988885 5899875 3899999999
No 125
>KOG0291|consensus
Probab=92.98 E-value=32 Score=43.17 Aligned_cols=196 Identities=12% Similarity=0.006 Sum_probs=120.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC--CCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN--DTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~--~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~ 1123 (1332)
+..+.++..+++|-+.....|.|...+.. ....+.... ......||+.+.+..| .|..+.+.|.+++.. |...
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWq---sEsYVlKQQgH~~~i~~l~YSpDgq~i-aTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQ---SESYVLKQQGHSDRITSLAYSPDGQLI-ATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEee---ccceeeeccccccceeeEEECCCCcEE-EeccCCCcEEEEeccCceEE
Confidence 56777888888888887777777777644 122233222 3366789999765555 788888999999998 5555
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+...-.....++.+.. +|+..++..-. +++..-+| ...+-+.+....-.+-..+|+|+.+..+.-.....-
T Consensus 386 vTFteHts~Vt~v~f~~-~g~~llssSLD------GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLD------GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred EEeccCCCceEEEEEEe-cCCEEEEeecC------CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence 55654445566776665 33333333222 33444444 222333333322233457899999888887777777
Q ss_pred eEEEEecCCCc-eEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCC
Q psy5806 1203 RIEYCDFFGRS-RKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDT 1259 (1332)
Q Consensus 1203 ~I~~~d~dG~~-~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~ 1259 (1332)
.|..-++.... ..++-. -....+|++ +..+..||-..| .++|.+.+....+
T Consensus 459 ~IfvWS~qTGqllDiLsGHEgPVs~l~f-----~~~~~~LaS~SW-DkTVRiW~if~s~ 511 (893)
T KOG0291|consen 459 EIFVWSVQTGQLLDILSGHEGPVSGLSF-----SPDGSLLASGSW-DKTVRIWDIFSSS 511 (893)
T ss_pred EEEEEEeecCeeeehhcCCCCcceeeEE-----ccccCeEEeccc-cceEEEEEeeccC
Confidence 88888886433 333333 334456676 345666666655 4688877777653
No 126
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.82 E-value=0.26 Score=45.13 Aligned_cols=42 Identities=29% Similarity=0.371 Sum_probs=34.4
Q ss_pred CCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEec
Q psy5806 1167 DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209 (1332)
Q Consensus 1167 dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~ 1209 (1332)
||+...+ +.+++..||||++|++++.||+++...+.|..+..
T Consensus 42 d~~~~~~-va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 42 DGKEVKV-VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eCCEeEE-eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 5555444 44579999999999999999999999999988754
No 127
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.61 E-value=15 Score=44.45 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=61.5
Q ss_pred CcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe--
Q psy5806 1142 RGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-- 1219 (1332)
Q Consensus 1142 ~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-- 1219 (1332)
.+.||++... +.++.+++.... .+....+..+..++++ +++||+.+ ..++|..+|...... +..
T Consensus 256 ~~~vy~~~~~-------g~l~ald~~tG~--~~W~~~~~~~~~~~~~--~~~vy~~~-~~g~l~ald~~tG~~--~W~~~ 321 (394)
T PRK11138 256 GGVVYALAYN-------GNLVALDLRSGQ--IVWKREYGSVNDFAVD--GGRIYLVD-QNDRVYALDTRGGVE--LWSQS 321 (394)
T ss_pred CCEEEEEEcC-------CeEEEEECCCCC--EEEeecCCCccCcEEE--CCEEEEEc-CCCeEEEEECCCCcE--EEccc
Confidence 5689988753 368877774332 3343344444445554 78999986 567899999853321 221
Q ss_pred ---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.....+.++ .+++||+.+. .+.|+.++..+|
T Consensus 322 ~~~~~~~~sp~v-------~~g~l~v~~~-~G~l~~ld~~tG 355 (394)
T PRK11138 322 DLLHRLLTAPVL-------YNGYLVVGDS-EGYLHWINREDG 355 (394)
T ss_pred ccCCCcccCCEE-------ECCEEEEEeC-CCEEEEEECCCC
Confidence 112234567 7899999974 578999999888
No 128
>KOG1446|consensus
Probab=92.57 E-value=22 Score=40.16 Aligned_cols=154 Identities=15% Similarity=0.042 Sum_probs=101.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeE-EEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFV-IDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glA-vDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
..+.+|+|+..+..+..+ ..+.+|+.+++.+|....+|....-+ +.-+- ....+.-||-+......|+-.++. .++
T Consensus 15 ~~i~sl~fs~~G~~lits-s~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITS-SEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CceeEEEecCCCCEEEEe-cCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 346799999888777664 47778998998877777666543211 22222 233455677777778889988886 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.+...+--+...+|.+.|.+ -.|.+..-. ..|..=++.-.+.+.++. +..+.-.|.|++ +.++-+-.+++
T Consensus 93 lRYF~GH~~~V~sL~~sP~~-d~FlS~S~D------~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~-GLifA~~~~~~ 162 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKD-DTFLSSSLD------KTVRLWDLRVKKCQGLLN--LSGRPIAAFDPE-GLIFALANGSE 162 (311)
T ss_pred EEEcCCCCceEEEEEecCCC-CeEEecccC------CeEEeeEecCCCCceEEe--cCCCcceeECCC-CcEEEEecCCC
Confidence 44454444678999999954 888886544 456666777667666665 344456789965 44444444555
Q ss_pred eEEEEecC
Q psy5806 1203 RIEYCDFF 1210 (1332)
Q Consensus 1203 ~I~~~d~d 1210 (1332)
.|.-+|+.
T Consensus 163 ~IkLyD~R 170 (311)
T KOG1446|consen 163 LIKLYDLR 170 (311)
T ss_pred eEEEEEec
Confidence 88887774
No 129
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=92.48 E-value=10 Score=41.70 Aligned_cols=135 Identities=12% Similarity=0.036 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCceEEEEee-CCceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe-cCCCceEEEE
Q psy5806 1100 ANNIYYIDSQMHTINVARS-DGQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY-LDGSYRTVLV 1175 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~l-dG~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~-ldG~~~~~l~ 1175 (1332)
+++||+++ ..+.|..++. +|+..-. +......+ .+++ .+.||+.... .+|+.++ .+|...-.+.
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~--~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVVD--GGRVYVGTSD-------GSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEEE--TTEEEEEETT-------SEEEEEETTTSCEEEEEE
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eeec--ccccccccce-------eeeEecccCCcceeeeec
Confidence 89999985 4668888887 6765433 21222222 2333 5688888733 3788888 5676655432
Q ss_pred ecC-----CCCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEeecc-------------cceEEEecCCcccc
Q psy5806 1176 EED-----LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVISKVA-------------PYGLSVRQSPGKAF 1236 (1332)
Q Consensus 1176 ~~~-----l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~~~~-------------P~glav~~~~~~~~ 1236 (1332)
... +..+...+++ ++++|.... .+.|..+|+. |..+-.. .... .-.+.+ .
T Consensus 104 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~-------~ 172 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKY-PVGEPRGSSPISSFSDINGSPVI-------S 172 (238)
T ss_dssp E-SSCTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEE-ESSTT-SS--EEEETTEEEEEEC-------C
T ss_pred cccccccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEe-ecCCCCCCcceeeecccccceEE-------E
Confidence 211 1223334444 788888764 6788888875 4332111 1111 123344 4
Q ss_pred ccEEEEEECCCCEEEEEEecCC
Q psy5806 1237 IVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1237 ~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++.+|++..... ++.++..+|
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg 193 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATG 193 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTT
T ss_pred CCEEEEEcCCCe-EEEEECCCC
Confidence 669999886554 666688887
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.33 E-value=26 Score=46.73 Aligned_cols=195 Identities=7% Similarity=-0.034 Sum_probs=107.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCC----CCc--eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDS----TRI--KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g----~~~--~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG 1120 (1332)
+.+++|++.++.|..+ ...+.|...++... ... ......+.....+++.+...+++..+-...+.|.++++..
T Consensus 486 V~~i~fs~dg~~latg-g~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATA-GVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEE-eCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 5789999887655544 46788887775421 110 1111112234456666544344445555677999999874
Q ss_pred ceE-EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1121 QHK-KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1121 ~~~-~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
... ..+..-.....+|+++|..+.++++-... +.|..-++........+... .....+.+....+.++.+-.
T Consensus 565 ~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 565 SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD------GSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC------CEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEe
Confidence 433 33433335578999998777777776443 45666666544433333322 23444555444455555556
Q ss_pred CCCeEEEEecCCCce--EEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1200 TNKRIEYCDFFGRSR--KIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1200 ~~~~I~~~d~dG~~~--~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
..+.|...|+..... ..+.. ......+.+ .++..+++-...+.|...+..
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f-------~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-------VDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEE-------eCCCEEEEEECCCEEEEEeCC
Confidence 778888888854321 12211 223345555 333344455556677666654
No 131
>KOG0279|consensus
Probab=92.12 E-value=23 Score=39.38 Aligned_cols=203 Identities=11% Similarity=0.004 Sum_probs=129.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
+.+++..+.++ .+++-...+.++.-++..|.....+. -.-....++||+..++.| ++-+...+|...+.-|.....+
T Consensus 66 v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~ 142 (315)
T KOG0279|consen 66 VSDVVLSSDGN-FALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTI 142 (315)
T ss_pred ecceEEccCCc-eEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEE
Confidence 45666666655 45555578889999998664444444 233467899999989988 7877788999999999887775
Q ss_pred ecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1127 VND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1127 ~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
..+ .+-..-+.+.|.....+....+. ...+-.=++++-+...-....-...+.+++.+++.. .-+-...+.+
T Consensus 143 ~~~~~~~WVscvrfsP~~~~p~Ivs~s~-----DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGgkdg~~ 216 (315)
T KOG0279|consen 143 HEDSHREWVSCVRFSPNESNPIIVSASW-----DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGGKDGEA 216 (315)
T ss_pred ecCCCcCcEEEEEEcCCCCCcEEEEccC-----CceEEEEccCCcchhhccccccccEEEEEECCCCCE-EecCCCCceE
Confidence 443 45678899999764444444332 133444566665544333333456778888877544 3344456777
Q ss_pred EEEecC-CCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1205 EYCDFF-GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1205 ~~~d~d-G~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
+--|++ |.+...+-......+|++ ..++.+..-....+|...+.+++ ..+..+.
T Consensus 217 ~LwdL~~~k~lysl~a~~~v~sl~f-------spnrywL~~at~~sIkIwdl~~~---~~v~~l~ 271 (315)
T KOG0279|consen 217 MLWDLNEGKNLYSLEAFDIVNSLCF-------SPNRYWLCAATATSIKIWDLESK---AVVEELK 271 (315)
T ss_pred EEEEccCCceeEeccCCCeEeeEEe-------cCCceeEeeccCCceEEEeccch---hhhhhcc
Confidence 777775 444222222556677887 55553333345566888888776 4444443
No 132
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.76 E-value=10 Score=46.07 Aligned_cols=177 Identities=13% Similarity=0.041 Sum_probs=96.8
Q ss_pred eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ--MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1068 ~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~--~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
.|+..+++. +..++++. ..+.-...++.+.+++|-++-.. .-.|.+.+++++....+......=..=...|...+|
T Consensus 219 ~i~~~~l~~-g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 219 RIYYLDLNT-GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred eEEEEeccC-Cccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEE
Confidence 477777663 33444443 22333445666667887776444 446888899887754443321111122346667778
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe--EEEEecC-CCceEEEEe--e
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR--IEYCDFF-GRSRKIVIS--K 1220 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~--I~~~d~d-G~~~~~~~~--~ 1220 (1332)
+|+.... +.+.|++.+++|+..+.+.... ....--.+.+++++|-+.....+. |...++. |...+.+.. .
T Consensus 297 vf~Sdr~----G~p~I~~~~~~g~~~~riT~~~-~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~ 371 (425)
T COG0823 297 VFTSDRG----GRPQIYLYDLEGSQVTRLTFSG-GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL 371 (425)
T ss_pred EEEeCCC----CCcceEEECCCCCceeEeeccC-CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc
Confidence 7774322 4689999999999976655432 332234567778887777644444 5555553 222333322 3
Q ss_pred cccceEEEecCCccccccE-EEEEECCCCEEEEEEecCC
Q psy5806 1221 VAPYGLSVRQSPGKAFIVE-LYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1221 ~~P~glav~~~~~~~~~~~-lYwtd~~~~~V~~~~~~~g 1258 (1332)
..+-..+. .+.. +|.+.+..+.+...-..++
T Consensus 372 ~e~ps~~~-------ng~~i~~~s~~~~~~~l~~~s~~g 403 (425)
T COG0823 372 NESPSWAP-------NGRMIMFSSGQGGGSVLSLVSLDG 403 (425)
T ss_pred CCCCCcCC-------CCceEEEeccCCCCceEEEeeccc
Confidence 33334444 4433 4545555455544444444
No 133
>smart00181 EGF Epidermal growth factor-like domain.
Probab=91.64 E-value=0.12 Score=38.35 Aligned_cols=29 Identities=41% Similarity=1.100 Sum_probs=23.8
Q ss_pred ccCCCCCCcc-ccccCCCCccccCCCCeeEc
Q psy5806 972 CGSNNGGCSH-LCLRNPTNFTCACPTGILLS 1001 (1332)
Q Consensus 972 C~~~nGgCsh-lCl~~p~~~~C~Cp~g~~l~ 1001 (1332)
|..+ +.|.+ .|..+++++.|.|+.||.+.
T Consensus 2 C~~~-~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 2 CASG-GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCc-CCCCCCEEECCCCCeEeECCCCCccC
Confidence 4444 56877 89999999999999999864
No 134
>KOG0266|consensus
Probab=91.25 E-value=38 Score=41.81 Aligned_cols=196 Identities=12% Similarity=0.004 Sum_probs=116.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCC-ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee-CC-ceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTR-IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS-DG-QHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~-~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG-~~~ 1123 (1332)
+..++|.+.++. .++-...+.|+...+..+.. .............++++.+.+.. -++-....+|.++++ +. ...
T Consensus 162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~-l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 162 VTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSY-LLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred eEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcE-EEEecCCceEEEeeccCCCeEE
Confidence 445777777766 44443555555555432221 11111122335678899876663 366666788999999 43 556
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+++..=......++++|.. .+..+-... ..|..-++.+......+...-...+++++..++..|.-+ ...+.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~ 311 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDG-NLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGT 311 (456)
T ss_pred EEecCCCCceEEEEecCCC-CEEEEecCC------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCcc
Confidence 6665544567999999955 776665544 456666666544444444344566778888776666665 66889
Q ss_pred EEEEecCCCce---EEEEeecc--c-ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1204 IEYCDFFGRSR---KIVISKVA--P-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~~~---~~~~~~~~--P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|...|+.+... +.+....+ | ..+.. ..++...++-...+.+...+...+
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~f------sp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQF------SPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEE------CCCCcEEEEecCCCeEEEEEccCC
Confidence 99999986652 23332333 3 33344 123334445556667777776655
No 135
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=91.20 E-value=0.17 Score=38.55 Aligned_cols=34 Identities=32% Similarity=0.982 Sum_probs=25.8
Q ss_pred CcccCCCCCCcc--ccccCCCCccccCCCCeeEccCCccc
Q psy5806 970 NACGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSC 1007 (1332)
Q Consensus 970 n~C~~~nGgCsh--lCl~~p~~~~C~Cp~g~~l~~d~~tC 1007 (1332)
++|... ..|.+ .|..++++|.|.|+.||. ++++|
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 3 DECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC 38 (39)
T ss_pred ccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence 456542 35665 899999999999999987 56666
No 136
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.20 E-value=25 Score=44.69 Aligned_cols=186 Identities=10% Similarity=-0.045 Sum_probs=99.3
Q ss_pred cceEEEEEeCCCcEEEEEeC-------CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC--------
Q psy5806 1045 MSSIFFDYHYSKNLIYFADM-------RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-------- 1109 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~-------~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-------- 1109 (1332)
..+...++++.++++.++.. ....|+.++.. +.. ..+. .+. .-..-.+++.++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt-~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL-EGH-SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee-cCC-CCCCceECCCCCceEEEecCcceEEEec
Confidence 45667778888888877752 23467777743 333 3332 221 12333455555666555322
Q ss_pred ---CceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE---EecCCCceEE----EEecCC
Q psy5806 1110 ---MHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK---VYLDGSYRTV----LVEEDL 1179 (1332)
Q Consensus 1110 ---~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r---~~ldG~~~~~----l~~~~l 1179 (1332)
.+.|.+..+++..... .--..+..++++|..-+|.+.-. ++|+. +..++..... -+...+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~--------g~v~Va~Vvr~~~G~~~l~~~~~l~~~l 495 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG--------GKVYLAVVEQTEDGQYALTNPREVGPGL 495 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC--------CEEEEEEEEeCCCCceeecccEEeeccc
Confidence 2234334444321111 11135888999998778877753 24555 3333433222 022234
Q ss_pred CC-cceEEEecCCCEEEEEEcC-CCeEEEEecCCCceEEEEe--eccc-ceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1180 AF-PNELAIDFKQRRLFWADST-NKRIEYCDFFGRSRKIVIS--KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1180 ~~-p~glaiD~~~~~LY~~d~~-~~~I~~~d~dG~~~~~~~~--~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
.. +..++.-.+ ..|++.... ...++++++||...+.+-. ...| .+|+- ..+.||++|.. .+.+..
T Consensus 496 ~~~~~~l~W~~~-~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa-------~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 496 GDTAVSLDWRTG-DSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAA-------SPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred CCccccceEecC-CEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEec-------CCceEEEEcCC--ceEEec
Confidence 33 355665534 446666544 3459999999987665333 2223 34555 55689999853 355554
No 137
>KOG0273|consensus
Probab=91.19 E-value=39 Score=40.20 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=109.2
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCc-cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCC
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEY-MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTI 1090 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~-~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~ 1090 (1332)
..+|.+..-+..+|....+..-. ..+..- ..+.+|-++..+..|.-.+ -.+++...+...|+-.+.+ .+..
T Consensus 247 G~~LatG~~~G~~riw~~~G~l~----~tl~~HkgPI~slKWnk~G~yilS~~-vD~ttilwd~~~g~~~q~f---~~~s 318 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNLI----STLGQHKGPIFSLKWNKKGTYILSGG-VDGTTILWDAHTGTVKQQF---EFHS 318 (524)
T ss_pred CCeEEEeecCcEEEEEecCchhh----hhhhccCCceEEEEEcCCCCEEEecc-CCccEEEEeccCceEEEee---eecc
Confidence 45666655444355555443211 111111 2246777777766665554 4455555554323333222 2334
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
..+|.|||.+..=|++....+.|.|+.+++..+.. +..--+...+|..+| +|.|.-+-... .+-+|+-..-++.
T Consensus 319 ~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD----~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDD----GTLKIWSMGQSNS 393 (524)
T ss_pred CCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCC----CeeEeeecCCCcc
Confidence 45899999999999999999999999999876655 544446788999999 56666665433 2455664333222
Q ss_pred c------eEEEEecCCCCcce-EEEec-CCCEEEEEEcCCCeEEEEecC-CCceEEEEe-ecccceEEE
Q psy5806 1170 Y------RTVLVEEDLAFPNE-LAIDF-KQRRLFWADSTNKRIEYCDFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1170 ~------~~~l~~~~l~~p~g-laiD~-~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
. .+.|+... -.|.| ++-.+ .+-.|-|+ +....+...|.. |....++.. ....++|++
T Consensus 394 ~~~l~~Hskei~t~~-wsp~g~v~~n~~~~~~l~sa-s~dstV~lwdv~~gv~i~~f~kH~~pVysvaf 460 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIK-WSPTGPVTSNPNMNLMLASA-SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAF 460 (524)
T ss_pred hhhhhhhccceeeEe-ecCCCCccCCCcCCceEEEe-ecCCeEEEEEccCCceeEeeccCCCceEEEEe
Confidence 2 11122111 11222 22222 23334444 344556666664 444444433 555577777
No 138
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=91.09 E-value=0.12 Score=38.79 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=21.3
Q ss_pred CCccee--eeccCCCceEEeCCCCceecCCCCCc
Q psy5806 398 PKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSC 429 (1332)
Q Consensus 398 ~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC 429 (1332)
+++|+. .|.+.+++|+|.|..||.. ||..|
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C 36 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC 36 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence 456654 7889999999999999984 56655
No 139
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=91.06 E-value=0.23 Score=36.66 Aligned_cols=26 Identities=31% Similarity=0.752 Sum_probs=21.0
Q ss_pred CCcce--eeeccCCCceEEeCCCCceec
Q psy5806 398 PKVCS--HICLPNKHRFTCQCPLGLTLS 423 (1332)
Q Consensus 398 ~g~Cs--hlCl~~~~~~~C~C~~G~~L~ 423 (1332)
...|. ++|.+.+++|+|.|+.||...
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 34555 688998899999999999754
No 140
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=90.96 E-value=0.2 Score=36.39 Aligned_cols=29 Identities=34% Similarity=0.741 Sum_probs=21.7
Q ss_pred CCCCcceeeeccCCCceEEeCCCCceecCC
Q psy5806 396 CAPKVCSHICLPNKHRFTCQCPLGLTLSPD 425 (1332)
Q Consensus 396 C~~g~CshlCl~~~~~~~C~C~~G~~L~~d 425 (1332)
|....|...|-+... ..|.||+||.|+.+
T Consensus 3 Cn~t~CpA~CDpn~~-~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 3 CNQTECPADCDPNSP-GQCFCPEGYILDEG 31 (34)
T ss_pred cccccCCCccCCCCC-CceeCCCceEecCC
Confidence 444567788887553 49999999999754
No 141
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.85 E-value=17 Score=42.82 Aligned_cols=157 Identities=14% Similarity=0.192 Sum_probs=73.6
Q ss_pred cEEEEEeCC-CCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEE--EecCCCC
Q psy5806 1057 NLIYFADMR-SGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKI--LVNDLME 1132 (1332)
Q Consensus 1057 ~~lY~sd~~-~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~--~~~~~~~ 1132 (1332)
+.||.++.. ...++.++|+++.-.+..-..+ .+..|..+....+.||+...+ .++..++|+... +.+ +..+ -.
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~p~~-~~ 125 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEVPDD-WK 125 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE--TT-EE
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEECCcc-cc
Confidence 445555532 3458888888443333222112 233466777788998765432 467888887543 333 2222 12
Q ss_pred ceEEEE-cCCCcEEEEE-e-----------cCCCC----CCCCCcEEEEecCCCceEEEEecCCCCcceEEEec-CCCEE
Q psy5806 1133 PLAIAV-YPRRGLLFYS-H-----------WGLYD----NSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF-KQRRL 1194 (1332)
Q Consensus 1133 P~~iav-dp~~g~Lywt-d-----------~~~~~----~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~-~~~~L 1194 (1332)
.++-.+ +. .+.+++. + |..+. ..+..+|.++++.+.+.++++... .+-+-+-..+ +...|
T Consensus 126 g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 126 GYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLI 203 (386)
T ss_dssp EEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEE
T ss_pred cccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEE
Confidence 334333 33 3333322 1 11000 234678999999999988888754 4433444444 23445
Q ss_pred EEEEcC-----CCeEEEEecCCCceEEEE
Q psy5806 1195 FWADST-----NKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1195 Y~~d~~-----~~~I~~~d~dG~~~~~~~ 1218 (1332)
-++--+ ..||+.++.||++.+.+.
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~ 232 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTDGSNVKKVH 232 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETTS---EESS
T ss_pred EEeccCCcceeceEEEEEEcCCCcceeee
Confidence 555332 469999999998765553
No 142
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.76 E-value=36 Score=39.06 Aligned_cols=197 Identities=10% Similarity=0.046 Sum_probs=118.7
Q ss_pred EEeCCCcEEEEEeC----CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCC------c---------
Q psy5806 1051 DYHYSKNLIYFADM----RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQM------H--------- 1111 (1332)
Q Consensus 1051 d~d~~~~~lY~sd~----~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~------~--------- 1111 (1332)
.|++..++||-++. ..|.|-..+...+-.+.-.+.+..-.|.-|.+.+.++.|-+++.+- +
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 48889999999864 3477888886622111122223334699999999898999987541 1
Q ss_pred --eEEEE-eeCCceEEE--Eec--CCCCceEEEEcCCCcEEEEEecCCCC-CCCCCcEEEEecCCCceEEE-EecC----
Q psy5806 1112 --TINVA-RSDGQHKKI--LVN--DLMEPLAIAVYPRRGLLFYSHWGLYD-NSPTTKIEKVYLDGSYRTVL-VEED---- 1178 (1332)
Q Consensus 1112 --~I~v~-~ldG~~~~~--~~~--~~~~P~~iavdp~~g~Lywtd~~~~~-~~~~~~I~r~~ldG~~~~~l-~~~~---- 1178 (1332)
.+..+ ..+|+.... +.. ...+.|.||+++ .|.+.+.....-. ....+-|.....++.. +.+ ....
T Consensus 137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~ 214 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRR 214 (305)
T ss_pred CCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHh
Confidence 12222 223443322 211 224689999999 6888888643311 1123455555555432 222 1111
Q ss_pred -CCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1179 -LAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1179 -l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
-.+.-.|+++.+++.+..+-...+.+...|.........+.+...-||+. ..+- |+.-...+.+.+.....
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~-------~~~~-f~~ssG~G~~~~~~~~~ 286 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAP-------TDDG-FLVSSGQGQLIRLSPDG 286 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeee-------cCCc-eEEeCCCccEEEccCcc
Confidence 13455789998888999999899999998665333222222667778888 5444 55555778887776544
No 143
>KOG0266|consensus
Probab=90.51 E-value=53 Score=40.58 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=117.5
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCC-CCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDS-TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g-~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
..+.+++|.+... +..+-....+|+..++... ....++. .-......+++.+.+ ++.++-...+.|+++++. |+.
T Consensus 204 ~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 204 RGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred cceeeeEECCCCc-EEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence 3467889988876 4455556778888887322 3333332 333467899999988 777888888899999998 455
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE--EEEecCCCCc---ceEEEecCCCEEEEE
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT--VLVEEDLAFP---NELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~--~l~~~~l~~p---~glaiD~~~~~LY~~ 1197 (1332)
..++..-.....++++.+ .|.++++.... ..|..-++...... .++. ....| .-+.++++++.|+.
T Consensus 281 ~~~l~~hs~~is~~~f~~-d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~- 351 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSP-DGNLLVSASYD------GTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLS- 351 (456)
T ss_pred EEeeeccCCceEEEEECC-CCCEEEEcCCC------ccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcEEEE-
Confidence 555655445678899988 56666766433 56777777666622 2222 12233 44556655544444
Q ss_pred EcCCCeEEEEecC-CCceEEEEe--ec--ccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1198 DSTNKRIEYCDFF-GRSRKIVIS--KV--APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1198 d~~~~~I~~~d~d-G~~~~~~~~--~~--~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
-...+.+.-.++. +........ .. -.+.... -.++....+-...+.|+..+..++
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL------STGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEecccc------cCCCCeEEEEeCCceEEEEeCCcc
Confidence 3455567777776 333333222 11 1222221 134445555567778888887765
No 144
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.24 E-value=49 Score=40.14 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=107.2
Q ss_pred EEEEeCCCcEEEEE-eCCCC---eEEEEECCCCCCceeEeecCCCCceeeEEEecCC--eEEEEcCC----------Cce
Q psy5806 1049 FFDYHYSKNLIYFA-DMRSG---NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN--NIYYIDSQ----------MHT 1112 (1332)
Q Consensus 1049 ~id~d~~~~~lY~s-d~~~~---~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~--~LY~td~~----------~~~ 1112 (1332)
++.+++.+++|-++ |..++ .|+.+++.+|.. +...+..+.+=.+-|..+ .+|++... ...
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~----l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF----LPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE----EEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC----cCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 45566666666655 32222 367777764422 222222333222555554 67776433 234
Q ss_pred EEEEeeCCceE--EEEecCCCCce---EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-----ceEEEEecCCCCc
Q psy5806 1113 INVARSDGQHK--KILVNDLMEPL---AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-----YRTVLVEEDLAFP 1182 (1332)
Q Consensus 1113 I~v~~ldG~~~--~~~~~~~~~P~---~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-----~~~~l~~~~l~~p 1182 (1332)
|...++..... .+|....+.+. ++.+++...+|+++.... . ....++.++++.. ....+.. ... -
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--~-~~s~v~~~d~~~~~~~~~~~~~l~~-~~~-~ 278 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--T-SESEVYLLDLDDGGSPDAKPKLLSP-RED-G 278 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--S-SEEEEEEEECCCTTTSS-SEEEEEE-SSS-S
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--c-cCCeEEEEeccccCCCcCCcEEEeC-CCC-c
Confidence 55556543322 34555445554 788899888998876554 1 1367999999874 3333333 211 1
Q ss_pred ceEEEecCCCEEEEEE---cCCCeEEEEecCCCc----eEEEEe---ecccceEEEecCCccccccEEEEEEC--CCCEE
Q psy5806 1183 NELAIDFKQRRLFWAD---STNKRIEYCDFFGRS----RKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSV 1250 (1332)
Q Consensus 1183 ~glaiD~~~~~LY~~d---~~~~~I~~~d~dG~~----~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V 1250 (1332)
..-.++..++++|+.. +.+++|.+++++... ..+++. .....++.+ ++++|++... ...+|
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~-------~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL-------FKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-------ETTEEEEEEEETTEEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-------ECCEEEEEEEECCccEE
Confidence 1234666688888743 237899999997543 335555 345778888 8999988876 34455
Q ss_pred EEEEec
Q psy5806 1251 VIAREK 1256 (1332)
Q Consensus 1251 ~~~~~~ 1256 (1332)
...++.
T Consensus 352 ~v~~~~ 357 (414)
T PF02897_consen 352 RVYDLD 357 (414)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 666655
No 145
>KOG0286|consensus
Probab=90.01 E-value=37 Score=38.04 Aligned_cols=155 Identities=13% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCc
Q psy5806 1065 RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRG 1143 (1332)
Q Consensus 1065 ~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g 1143 (1332)
+..+.-.-+++.|.....+. -..+...+|++-+...|.|++-.-.....++++. |..++.+..-....++|.+.| +|
T Consensus 164 GD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G 241 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SG 241 (343)
T ss_pred CCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CC
Confidence 45555555666443333332 2345677888888789999987776677778885 666666655556789999999 89
Q ss_pred EEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC--CCCcceEEEecCCCEEEEEEcCCCeEEEEec-CCCceEEEEe-
Q psy5806 1144 LLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED--LAFPNELAIDFKQRRLFWADSTNKRIEYCDF-FGRSRKIVIS- 1219 (1332)
Q Consensus 1144 ~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~--l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~-dG~~~~~~~~- 1219 (1332)
.-|.|-... +.....+|-......++... +.-.+.+++. ..+||.++-.....+..-|. .|...-++..
T Consensus 242 ~afatGSDD------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH 314 (343)
T KOG0286|consen 242 DAFATGSDD------ATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH 314 (343)
T ss_pred CeeeecCCC------ceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccceEEEeecc
Confidence 999986554 44555556554444444422 2234566676 45666666556666665544 2333333321
Q ss_pred -------ecccceEEE
Q psy5806 1220 -------KVAPYGLSV 1228 (1332)
Q Consensus 1220 -------~~~P~glav 1228 (1332)
...|.|+|+
T Consensus 315 eNRvScl~~s~DG~av 330 (343)
T KOG0286|consen 315 ENRVSCLGVSPDGMAV 330 (343)
T ss_pred CCeeEEEEECCCCcEE
Confidence 567778777
No 146
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=89.89 E-value=16 Score=45.75 Aligned_cols=138 Identities=17% Similarity=0.243 Sum_probs=79.1
Q ss_pred eCCCcEEEEEeCCC-CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC-CceEEEEeeC-C---------
Q psy5806 1053 HYSKNLIYFADMRS-GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-MHTINVARSD-G--------- 1120 (1332)
Q Consensus 1053 d~~~~~lY~sd~~~-~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-~~~I~v~~ld-G--------- 1120 (1332)
++....+|.+|... +.|+|+-.+..... ......+--++ .+.||++... ...++.+.|. +
T Consensus 255 ~~~~~vvY~gDD~~~~~lYkFVs~~~~~~------~~~~~~~~ll~--~GtLyaak~~~~g~~~Wv~L~~~~~~l~~~~~ 326 (524)
T PF05787_consen 255 DPGRVVVYMGDDGRNGYLYKFVSDKPWDP------GDRAANRDLLD--EGTLYAAKFNQDGTGEWVPLGHGQGGLTAKNG 326 (524)
T ss_pred cCCeEEEEEEecCCCCeEEEEecCCCCCC------cccchhhhhhh--CCEeceEEECCCCcEEEEECCCcccccccCCC
Confidence 67777889988644 56787763311000 00000011123 6777776443 2345555552 1
Q ss_pred --c-------eEEE--E--ecCCCCceEEEEcCCCcEEEEEecCCCC-------------CCCCCcEEEEecCCC-----
Q psy5806 1121 --Q-------HKKI--L--VNDLMEPLAIAVYPRRGLLFYSHWGLYD-------------NSPTTKIEKVYLDGS----- 1169 (1332)
Q Consensus 1121 --~-------~~~~--~--~~~~~~P~~iavdp~~g~Lywtd~~~~~-------------~~~~~~I~r~~ldG~----- 1169 (1332)
. .|.. . .+.+++|-+|+++|.+|.||++..+... ....+.|+|...++.
T Consensus 327 ~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~ 406 (524)
T PF05787_consen 327 FADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAAT 406 (524)
T ss_pred CCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccc
Confidence 0 0111 1 2467899999999999999999755420 123467999998876
Q ss_pred --ceEEEEe-----------------cCCCCcceEEEecCCCEEEEEEc
Q psy5806 1170 --YRTVLVE-----------------EDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1170 --~~~~l~~-----------------~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
....++. ..+..|..|++|+. ++||+.+-
T Consensus 407 ~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~~-G~LwI~eD 454 (524)
T PF05787_consen 407 TFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDPD-GNLWIQED 454 (524)
T ss_pred eeEEEEEEEecCcccccccccCcccCCCcCCCCceEECCC-CCEEEEeC
Confidence 2222221 12567999999975 55666643
No 147
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.78 E-value=24 Score=42.51 Aligned_cols=59 Identities=10% Similarity=-0.040 Sum_probs=40.9
Q ss_pred CCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++.||++. ..+.+..+|.......--.....+..+++ .+++||+.+ ..+.|+.++..+|
T Consensus 256 ~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~-------~~~~vy~~~-~~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALA-YNGNLVALDLRSGQIVWKREYGSVNDFAV-------DGGRIYLVD-QNDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEE-cCCeEEEEECCCCCEEEeecCCCccCcEE-------ECCEEEEEc-CCCeEEEEECCCC
Confidence 57899876 45788888885322111111334456778 899999998 4689999999887
No 148
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=89.72 E-value=0.39 Score=36.05 Aligned_cols=30 Identities=30% Similarity=0.776 Sum_probs=23.6
Q ss_pred cccCCC-Ccc--eeeeccCCCceEEeCCCCcee
Q psy5806 393 QSHCAP-KVC--SHICLPNKHRFTCQCPLGLTL 422 (1332)
Q Consensus 393 ~n~C~~-g~C--shlCl~~~~~~~C~C~~G~~L 422 (1332)
.++|.. ..| .+.|.+..++|+|.|+.||..
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 356664 567 458999999999999999974
No 149
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.68 E-value=39 Score=40.37 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=40.8
Q ss_pred CCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1191 QRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1191 ~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+++||.+. ..+.+..+|.......-......+..+++ .+++||+.+ ..+.|+.+++.+|
T Consensus 241 ~~~vy~~~-~~g~l~a~d~~tG~~~W~~~~~~~~~p~~-------~~~~vyv~~-~~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVS-YQGRVAALDLRSGRVLWKRDASSYQGPAV-------DDNRLYVTD-ADGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEE-cCCEEEEEECCCCcEEEeeccCCccCceE-------eCCEEEEEC-CCCeEEEEECCCC
Confidence 67899876 45789998885222111111333456678 889999987 5689999999888
No 150
>KOG0315|consensus
Probab=89.50 E-value=36 Score=37.24 Aligned_cols=226 Identities=11% Similarity=0.040 Sum_probs=125.7
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCc-cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEY-MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~-~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
.+|..+.... ||..++.....+ ++..+.+. +|+.++.|...+++.|-. .+.|+++.-+|.+ -..+..+.. ....
T Consensus 53 ~~LAaa~~qh-vRlyD~~S~np~-Pv~t~e~h~kNVtaVgF~~dgrWMyTg-seDgt~kIWdlR~-~~~qR~~~~-~spV 127 (311)
T KOG0315|consen 53 KDLAAAGNQH-VRLYDLNSNNPN-PVATFEGHTKNVTAVGFQCDGRWMYTG-SEDGTVKIWDLRS-LSCQRNYQH-NSPV 127 (311)
T ss_pred chhhhccCCe-eEEEEccCCCCC-ceeEEeccCCceEEEEEeecCeEEEec-CCCceEEEEeccC-cccchhccC-CCCc
Confidence 3444455566 888888765544 34455655 789999999888877755 4788888888774 222233322 2445
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeCCc-e-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQ-H-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
..+.+.+....|+..|. ++.|.+.|+-.. . .+.+-+.....+.++|+|. |.+..+.... +..+.=+|-+.
T Consensus 128 n~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d-gsml~a~nnk------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 128 NTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD-GSMLAAANNK------GNCYVWRLLNH 199 (311)
T ss_pred ceEEecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCC-CcEEEEecCC------ccEEEEEccCC
Confidence 77888988899988775 568999999644 2 2334444456789999995 4444443222 33444344332
Q ss_pred c-eEEEEe-cCC----CCcceEEEecCCCEEEEEEcCCCeEEEEecCCC-ceEEEEe--ecccceEEEecCCccccccEE
Q psy5806 1170 Y-RTVLVE-EDL----AFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR-SRKIVIS--KVAPYGLSVRQSPGKAFIVEL 1240 (1332)
Q Consensus 1170 ~-~~~l~~-~~l----~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~-~~~~~~~--~~~P~glav~~~~~~~~~~~l 1240 (1332)
. ...|.. .++ .+..-.-+.++.+.|- +-+....+..-+.++- ..+..+. ...-.+-++ +.++.||
T Consensus 200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la-t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~F-----S~dg~Yl 273 (311)
T KOG0315|consen 200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLA-TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAF-----SADGEYL 273 (311)
T ss_pred CccccceEhhheecccceEEEEEECCCCcEEE-eecCCceEEEEecCCceeeEEEeecCCceEEeeee-----ccCccEE
Confidence 2 222221 111 1111223455544333 2234445555556655 2222222 234455555 2244444
Q ss_pred EEEECCCCEEEEEEecCC
Q psy5806 1241 YWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1241 Ywtd~~~~~V~~~~~~~g 1258 (1332)
+|-...+.+.--+..+|
T Consensus 274 -vTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 274 -VTASSDHTARLWDLSAG 290 (311)
T ss_pred -EecCCCCceeecccccC
Confidence 44445566666666665
No 151
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=89.37 E-value=26 Score=37.71 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=75.7
Q ss_pred CeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcC-CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEE
Q psy5806 1067 GNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDS-QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1067 ~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~-~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~L 1145 (1332)
..|++++.. +.....+.....+.+..++-.+.++.+.+... ....|...++++.....+.. .....|..+|...+|
T Consensus 39 ~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEK-NIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecC-CCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceEEEECCCCCEE
Confidence 346666544 33333333223334678888888888776643 34578888988665554532 355689999977777
Q ss_pred EEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1146 FYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1146 ywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
..+..+. ..+.|.--++. ....+....-.....++.+++++.|..+.+
T Consensus 116 ~~~g~~n----~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 116 VLAGFGN----LNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEEEccC----CCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 7776554 22457766666 333444333344667888888877776654
No 152
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=88.74 E-value=1.2 Score=40.78 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.6
Q ss_pred eecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1084 PLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1084 ~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
+..++..|.||++|+..+.||+++...+.|.+...+
T Consensus 49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 446788999999999999999999999999887654
No 153
>KOG0294|consensus
Probab=88.63 E-value=48 Score=37.53 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=90.0
Q ss_pred ceEEEEEeCCCcEEEEEeC-CCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCC--eEEEEcCCCceEEEEeeCCce
Q psy5806 1046 SSIFFDYHYSKNLIYFADM-RSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN--NIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~-~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~--~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
.+.++|.+ ..|.+.. ...+|+.++|..-.....++ ...+..+.|.++...- +| .+....+.|.+++.+--.
T Consensus 45 sitavAVs----~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~~W~ 118 (362)
T KOG0294|consen 45 SITALAVS----GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVGSWE 118 (362)
T ss_pred ceeEEEec----ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhhe-eeecCCCcEEEEEcCCeE
Confidence 34566665 4666654 44679888877433333333 3466788888886543 45 355567788888876431
Q ss_pred -EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1123 -KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1123 -~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
...+..--.+..+|+++| .|+|-.+-.+. ..+..-+| .|..- .+..--..+.-+.+++++.+.|+. .
T Consensus 119 ~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D------~~lr~WNLV~Gr~a--~v~~L~~~at~v~w~~~Gd~F~v~--~ 187 (362)
T KOG0294|consen 119 LLKSLKAHKGQVTDLSIHP-SGKLALSVGGD------QVLRTWNLVRGRVA--FVLNLKNKATLVSWSPQGDHFVVS--G 187 (362)
T ss_pred EeeeecccccccceeEecC-CCceEEEEcCC------ceeeeehhhcCccc--eeeccCCcceeeEEcCCCCEEEEE--e
Confidence 122433334589999999 68887776554 45555555 34332 222111345557888888777766 4
Q ss_pred CCeEEEEecCC
Q psy5806 1201 NKRIEYCDFFG 1211 (1332)
Q Consensus 1201 ~~~I~~~d~dG 1211 (1332)
.++|..+.++.
T Consensus 188 ~~~i~i~q~d~ 198 (362)
T KOG0294|consen 188 RNKIDIYQLDN 198 (362)
T ss_pred ccEEEEEeccc
Confidence 46677766654
No 154
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=88.57 E-value=27 Score=41.52 Aligned_cols=148 Identities=13% Similarity=0.096 Sum_probs=86.1
Q ss_pred cceEEEEEeCCCcEEEEE--eCCCC--eEEEEECCCCCCceeEeecC---CCCceeeEEE-ecCCeEEEEcCC--CceEE
Q psy5806 1045 MSSIFFDYHYSKNLIYFA--DMRSG--NLRTFDMSDSTRIKPIPLMN---DTIRDNFVID-WVANNIYYIDSQ--MHTIN 1114 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~s--d~~~~--~I~~~~l~~g~~~~~i~~~~---~~~p~glAvD-w~~~~LY~td~~--~~~I~ 1114 (1332)
.....+.+.+.+++|++. +...+ .|..+++..|....++.... +.....+.+- ..+..++|.... ...|.
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 345677787777756644 43333 35666765433332222222 2222334432 345555554333 45788
Q ss_pred EEeeCCceEEEEecCCCCce-EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEEecCCCCcceEEEecCCC
Q psy5806 1115 VARSDGQHKKILVNDLMEPL-AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLVEEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1115 v~~ldG~~~~~~~~~~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~~~~l~~p~glaiD~~~~ 1192 (1332)
.++++|...+.|..+.-... -+++|+.++.||++.... +.....|++++++ |...+.|....-.+ ..+++.++++
T Consensus 264 ~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~--~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~ 340 (353)
T PF00930_consen 264 LYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD--NPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGK 340 (353)
T ss_dssp EEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG--GTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSS
T ss_pred EEcccccceeccccCceeecccceEcCCCCEEEEEecCC--CCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCC
Confidence 88888887666655544453 478999999999998664 3346789999999 77766655432222 3677777655
Q ss_pred EEE
Q psy5806 1193 RLF 1195 (1332)
Q Consensus 1193 ~LY 1195 (1332)
.+-
T Consensus 341 y~v 343 (353)
T PF00930_consen 341 YYV 343 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 155
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.35 E-value=1.6 Score=33.69 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=30.7
Q ss_pred cCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEE
Q psy5806 1189 FKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav 1228 (1332)
+++++||+++...+.|..+|........-+. +.+|.+|++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 3678999999999999999985433333334 889999987
No 156
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.68 E-value=1.1e+02 Score=40.67 Aligned_cols=197 Identities=8% Similarity=-0.078 Sum_probs=108.5
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+.++++++..+.+..+-...+.|...++..+..... +....+...+|++++..+.+.++-...+.|.++++. +....
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~-~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE-MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE-ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 3567888765444445555788888888764322222 212234567788876667777887778899999997 43333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce-EEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.+.. ......+++.+..|.++.+-... +.|...++..... ...+...-.....+.+. + +..+++-...+.
T Consensus 613 ~~~~-~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~-~~~lvs~s~D~~ 683 (793)
T PLN00181 613 TIKT-KANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D-SSTLVSSSTDNT 683 (793)
T ss_pred EEec-CCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCCCCEEEEEEe-C-CCEEEEEECCCE
Confidence 3432 24566777766667777765443 5677777644321 11121111223345443 3 334445556677
Q ss_pred EEEEecCCC----ceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1204 IEYCDFFGR----SRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1204 I~~~d~dG~----~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
|...|+.-. ....+.. ......+++ ++.+. +..+-...+.|...++...
T Consensus 684 ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~-----s~~~~-~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 684 LKLWDLSMSISGINETPLHSFMGHTNVKNFVGL-----SVSDG-YIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEeCCCCccccCCcceEEEcCCCCCeeEEEE-----cCCCC-EEEEEeCCCEEEEEECCCC
Confidence 777777421 1112222 222344555 11333 4445556778888776544
No 157
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.63 E-value=10 Score=46.16 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=95.2
Q ss_pred CCceeeEEEecCCeEEEEcC----CCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDS----QMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~----~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~ 1164 (1332)
....|+...+.++.+|++.. ....+.+.+-||.....+.........=+..|....|.+..... ...++|++.
T Consensus 147 e~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~---~~~~~i~~~ 223 (425)
T COG0823 147 EKLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFEL---GGCPRIYYL 223 (425)
T ss_pred hhhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEec---CCCceEEEE
Confidence 35677777777888887766 34567788888877666533221122222344344444443322 112789999
Q ss_pred ecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC--eEEEEecCCCceEEEEe----ecccceEEEecCCcccccc
Q psy5806 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK--RIEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~--~I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~ 1238 (1332)
+++...+..+++.. ..-..-++.+++++|-++-..++ .|+.+|++|++...+.+ ..+| +++- ++.
T Consensus 224 ~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~P-s~sp-------dG~ 294 (425)
T COG0823 224 DLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSP-SWSP-------DGS 294 (425)
T ss_pred eccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCc-cCCC-------CCC
Confidence 99998888887632 22223467778888888866544 48899999887555543 1222 2333 566
Q ss_pred EEEEEEC--CCCEEEEEEecCC
Q psy5806 1239 ELYWTDW--EAMSVVIAREKSD 1258 (1332)
Q Consensus 1239 ~lYwtd~--~~~~V~~~~~~~g 1258 (1332)
+||++.- +.-.|++++..++
T Consensus 295 ~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 295 KIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EEEEEeCCCCCcceEEECCCCC
Confidence 6655543 3346777776654
No 158
>KOG4378|consensus
Probab=87.08 E-value=23 Score=42.18 Aligned_cols=158 Identities=11% Similarity=0.077 Sum_probs=101.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
.+..++|+..+.+|--.. ..|.|....+..+.....+.........-|.+..-.|.|..+-+..+.+.++|..|..+..
T Consensus 123 tvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~ 201 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF 201 (673)
T ss_pred eeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc
Confidence 467888987776554443 3455655554433333333322222445788888899999888889999999999987665
Q ss_pred -EecCCC-CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcc-eEEEecCCCEEEEEEcCCC
Q psy5806 1126 -LVNDLM-EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN-ELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1126 -~~~~~~-~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~-glaiD~~~~~LY~~d~~~~ 1202 (1332)
....-. .-+||.+.|.+-.|+++--.. -+|+..+......+.-+. ..+|. .+++- +.+....+-...+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~D------kki~~yD~~s~~s~~~l~--y~~Plstvaf~-~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYD------KKINIYDIRSQASTDRLT--YSHPLSTVAFS-ECGTYLCAGNSKG 272 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEeccc------ceEEEeecccccccceee--ecCCcceeeec-CCceEEEeecCCc
Confidence 222222 347899999999999986444 678877765333222222 12332 34444 4455566666789
Q ss_pred eEEEEecCCCc
Q psy5806 1203 RIEYCDFFGRS 1213 (1332)
Q Consensus 1203 ~I~~~d~dG~~ 1213 (1332)
+|..+|+.+..
T Consensus 273 ~~i~YD~R~~k 283 (673)
T KOG4378|consen 273 ELIAYDMRSTK 283 (673)
T ss_pred eEEEEecccCC
Confidence 99999998864
No 159
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.60 E-value=25 Score=44.23 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=58.5
Q ss_pred EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC-CCeEEEEecCCCc
Q psy5806 1135 AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST-NKRIEYCDFFGRS 1213 (1332)
Q Consensus 1135 ~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~-~~~I~~~d~dG~~ 1213 (1332)
.+++||+++.|||---+. .+ .++..|. ..++..-.=+|||.+++++-|.-+. .+.++ |+|...
T Consensus 238 ~~s~D~~~~lvy~~tGnp-----~p------~~~~~r~---gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w--D~d~~~ 301 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNP-----SP------WNSHLRP---GDNLYTSSIVARDPDTGKIKWHYQTTPHDEW--DYDGVN 301 (527)
T ss_pred ceeEcCCCCeEEEeCCCC-----CC------CCCCCCC---CCCccceeEEEEccccCCEEEeeeCCCCCCc--cccCCC
Confidence 369999999999986443 22 2232220 1122233348999999999998654 33344 677655
Q ss_pred eEEEEe---ecc--cceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1214 RKIVIS---KVA--PYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1214 ~~~~~~---~~~--P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
..+++. ... |.-+.. .-.|++|+.|..+++...
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~------~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHA------DRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CcEEEEeccCCcEEEEEEEe------CCCceEEEEECCCCceec
Confidence 555553 222 222222 357899999998888753
No 160
>KOG0319|consensus
Probab=86.22 E-value=47 Score=41.70 Aligned_cols=231 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred cceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1012 REFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1012 ~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
..+|.-+-.+. |..+++.+....-+...........+++.++++..||.+- ++.-|....+..|.-...-....-+-.
T Consensus 31 G~~L~t~~~d~-Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~He~Pv 108 (775)
T KOG0319|consen 31 GQHLYTACGDR-VIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAIHEAPV 108 (775)
T ss_pred CCEEEEecCce-EEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhccCCCe
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
..+|+|+-+ .|--+-...+++.|+++.+.+.+. +..--.-..+|.++|. ..+|--..+ .+...+..-++....
T Consensus 109 i~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~--~~~~lL~sg---~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 109 ITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPH--WNRWLLASG---ATDGTVRVWNLNDKR 182 (775)
T ss_pred EEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCc--cchhheeec---CCCceEEEEEcccCc
Q ss_pred e-EEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCcccccc------EEEE
Q psy5806 1171 R-TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIV------ELYW 1242 (1332)
Q Consensus 1171 ~-~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~------~lYw 1242 (1332)
. ..+.........+|++-.+...+.-. .+...|..-|+--.....+++ -....|.+. ... ..+.
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~-~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~-------l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSV-GRDKVIIVWDLVQYKKLKTLPLYESLESVVR-------LREELGGKGEYII 254 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEe-ccCcEEEEeehhhhhhhheechhhheeeEEE-------echhcCCcceEEE
Q ss_pred EECCCCEEEEEEecCC
Q psy5806 1243 TDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1243 td~~~~~V~~~~~~~g 1258 (1332)
|--+++.+...+.+++
T Consensus 255 TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESG 270 (775)
T ss_pred EecCCceEEEEecccc
No 161
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=86.22 E-value=0.38 Score=35.18 Aligned_cols=25 Identities=32% Similarity=0.793 Sum_probs=18.7
Q ss_pred ccCCCCcceeeeccCC-CceEEeCCCCce
Q psy5806 394 SHCAPKVCSHICLPNK-HRFTCQCPLGLT 421 (1332)
Q Consensus 394 n~C~~g~CshlCl~~~-~~~~C~C~~G~~ 421 (1332)
++|.|++ .|+... ++|+|.|+.||+
T Consensus 4 ~~C~n~g---~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGG---TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTE---EEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCe---EEEeCCCCCEEeECCCCCc
Confidence 4666432 566666 799999999997
No 162
>KOG0310|consensus
Probab=85.99 E-value=76 Score=38.01 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=112.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEEE-
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKKI- 1125 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~~- 1125 (1332)
..+-|.+.++.++.+-.....+...+++++. .+.-+...-......++-+.+++|.+|.+..+.|+.+++.-. .+..
T Consensus 114 ~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred eEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 4556788889999887666666666766332 222222223467889999999999999999999999998754 2322
Q ss_pred EecCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE-EEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1126 LVNDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV-LVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1126 ~~~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~-l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+..+ .|-. +..-| .|.++.+..|+ .|-.-++-++.+.. ...+-....+.|.+-.++.+|+=+ +-.+.
T Consensus 193 lnhg--~pVe~vl~lp-sgs~iasAgGn-------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~-sLD~~ 261 (487)
T KOG0310|consen 193 LNHG--CPVESVLALP-SGSLIASAGGN-------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG-SLDRH 261 (487)
T ss_pred ecCC--CceeeEEEcC-CCCEEEEcCCC-------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec-ccccc
Confidence 4333 4544 33344 67787887654 56666777434322 222223446677777777888744 34556
Q ss_pred EEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEE
Q psy5806 1204 IEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVV 1251 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~ 1251 (1332)
+..+|+ ++-+++.+ .....+|++ .+.+..++. -..+|.+.
T Consensus 262 VKVfd~--t~~Kvv~s~~~~~pvLsiav-----s~dd~t~vi-GmsnGlv~ 304 (487)
T KOG0310|consen 262 VKVFDT--TNYKVVHSWKYPGPVLSIAV-----SPDDQTVVI-GMSNGLVS 304 (487)
T ss_pred eEEEEc--cceEEEEeeecccceeeEEe-----cCCCceEEE-ecccceee
Confidence 777663 45555555 444568888 233344444 44555554
No 163
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=85.23 E-value=5.8 Score=49.48 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=44.6
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCc-------------------eEEEEeeCCc-------eEEE-Ee------------
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMH-------------------TINVARSDGQ-------HKKI-LV------------ 1127 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~-------------------~I~v~~ldG~-------~~~~-~~------------ 1127 (1332)
....|++|++++..+.||++.+++. .|..++.++. .-.+ +.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 4568999999999999999855433 5655655543 1111 11
Q ss_pred -----cCCCCceEEEEcCCCcEEEEEecCC
Q psy5806 1128 -----NDLMEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1128 -----~~~~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
..+..|-.|++|| .|.||+.+.+.
T Consensus 428 ~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~ 456 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDP-DGNLWIQEDGG 456 (524)
T ss_pred CcccCCCcCCCCceEECC-CCCEEEEeCCC
Confidence 2367899999999 68888876554
No 164
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.94 E-value=3.1 Score=32.04 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=30.1
Q ss_pred cCCeEEEEcCCCceEEEEeeCCc-eEEEEecCCCCceEEEEc
Q psy5806 1099 VANNIYYIDSQMHTINVARSDGQ-HKKILVNDLMEPLAIAVY 1139 (1332)
Q Consensus 1099 ~~~~LY~td~~~~~I~v~~ldG~-~~~~~~~~~~~P~~iavd 1139 (1332)
.++.||+++...+.|.++++... ....+..+ ..|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 47889999999999999988633 33335444 789999875
No 165
>KOG0291|consensus
Probab=84.50 E-value=1.3e+02 Score=38.25 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=126.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC--CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND--TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~--~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
.+.+.+|++..+ +.++...+|.+....+.+ ...|....+ .....++++-.+..|=+..+..+.+-|+....+.-
T Consensus 267 kvtaa~fH~~t~-~lvvgFssG~f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 267 KVTAAAFHKGTN-LLVVGFSSGEFGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred ceeeeeccCCce-EEEEEecCCeeEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 355666776654 455555666655555441 222222222 34567777777888888888888888888875432
Q ss_pred EEEec--CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1124 KILVN--DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1124 ~~~~~--~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
++.. -..+...+++.| .|-+..|.... ++|-.-+...+...+.+.+.-....|+.+-. .++..++-+-.
T Consensus 343 -VlKQQgH~~~i~~l~YSp-Dgq~iaTG~eD------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLD 413 (893)
T KOG0291|consen 343 -VLKQQGHSDRITSLAYSP-DGQLIATGAED------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLD 413 (893)
T ss_pred -eeeccccccceeeEEECC-CCcEEEeccCC------CcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecC
Confidence 2332 256788999999 56666775433 6777778777777777775555566777663 34444455556
Q ss_pred CeEEEEecC-CCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCe
Q psy5806 1202 KRIEYCDFF-GRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDF 1274 (1332)
Q Consensus 1202 ~~I~~~d~d-G~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~ 1274 (1332)
|+|..-|+. +.+-+++.. ...---||+ |+.+.-+.-.....-.|+...+.+| +-..++. |-++|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Qfscvav-----D~sGelV~AG~~d~F~IfvWS~qTG---qllDiLs-GHEgP 480 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-----DPSGELVCAGAQDSFEIFVWSVQTG---QLLDILS-GHEGP 480 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeeeEEEE-----cCCCCEEEeeccceEEEEEEEeecC---eeeehhc-CCCCc
Confidence 667666663 344333332 333446777 3345555555667888999999998 5444443 34444
No 166
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=84.19 E-value=71 Score=35.13 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=84.5
Q ss_pred EcCCCceEEEEeeCCceEEE--E-------ecCCCCceEEEE--cCCCcEEEEEecCCCCCCCCCcEEEEec----CCCc
Q psy5806 1106 IDSQMHTINVARSDGQHKKI--L-------VNDLMEPLAIAV--YPRRGLLFYSHWGLYDNSPTTKIEKVYL----DGSY 1170 (1332)
Q Consensus 1106 td~~~~~I~v~~ldG~~~~~--~-------~~~~~~P~~iav--dp~~g~Lywtd~~~~~~~~~~~I~r~~l----dG~~ 1170 (1332)
+|..++.|.+..+|+..+.. + .+++..|+|+++ +|..|.+|+--.+. ++.|....+ .|..
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-----qG~~~Qy~l~d~gnGkv 193 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-----QGDIAQYKLIDQGNGKV 193 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-----CCceeEEEEEecCCceE
Confidence 46667788888888765443 2 235678999988 45555554433222 345666665 2333
Q ss_pred eEEEEecCC---CCcceEEEecCCCEEEEEEcCCCeEEEEecC---CCceEEEEe-------ecccceEEEecCCccccc
Q psy5806 1171 RTVLVEEDL---AFPNELAIDFKQRRLFWADSTNKRIEYCDFF---GRSRKIVIS-------KVAPYGLSVRQSPGKAFI 1237 (1332)
Q Consensus 1171 ~~~l~~~~l---~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d---G~~~~~~~~-------~~~P~glav~~~~~~~~~ 1237 (1332)
...++. .+ .+-.|+..|.+.+.||+++.. --|+++..+ |..++++-. .....||++ -+...-.
T Consensus 194 ~~k~vR-~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGlti--Yy~pnGk 269 (364)
T COG4247 194 GTKLVR-QFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTI--YYGPNGK 269 (364)
T ss_pred cceeeE-eeecCCcccceeeccccceEEEeecc-ceeeecccCCCCCCccchhhhhcCchhhcccccccEE--EEcCCCc
Confidence 333332 11 245699999999999999754 469988775 444555543 234567777 1111114
Q ss_pred cEEEEEECCCCEEEEEEecC
Q psy5806 1238 VELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1238 ~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
|+|.-+..++++-..+..++
T Consensus 270 GYL~aSSQGnNtya~y~ReG 289 (364)
T COG4247 270 GYLLASSQGNNTYAAYTREG 289 (364)
T ss_pred EEEEEecCCCceEEEEEeeC
Confidence 66666666666655555544
No 167
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.59 E-value=37 Score=38.12 Aligned_cols=149 Identities=13% Similarity=0.113 Sum_probs=82.3
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCc-eeEee-cCC----------CCceeeEEEecCCe-EEEEcCCCceEEEEeeCCce
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRI-KPIPL-MND----------TIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~-~~~----------~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~ 1122 (1332)
++.+|+--.+...|.|++|.+..-. +..+. .+. .+=-.||+|..+=. ||-+..+.+.|.+..+|-..
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~t 157 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPET 157 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCccc
Confidence 3789998888899999998854433 22221 111 12247999943322 44445556678889888554
Q ss_pred EEE---EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcE-EEEecCCCc-eE--EEEecCCCCcceEEEecCCCEEE
Q psy5806 1123 KKI---LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKI-EKVYLDGSY-RT--VLVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1123 ~~~---~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I-~r~~ldG~~-~~--~l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
..+ ..+.+.++..-.---.-|.||.++... . ...+| +..++.-.. .. +.+.........|.-+|.+++||
T Consensus 158 L~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~--~-~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY 234 (250)
T PF02191_consen 158 LSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYD--T-RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLY 234 (250)
T ss_pred CceEEEEEeccCchhhcceeeEeeEEEEEEECC--C-CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEE
Confidence 333 223444433322222368999998765 1 11333 344443221 11 11222334455688899999999
Q ss_pred EEEcCCCeEEEEec
Q psy5806 1196 WADSTNKRIEYCDF 1209 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~ 1209 (1332)
.=|-+ .+..+++
T Consensus 235 ~wd~G--~~v~Y~v 246 (250)
T PF02191_consen 235 AWDNG--YQVTYDV 246 (250)
T ss_pred EEECC--eEEEEEE
Confidence 87653 4444443
No 168
>KOG2139|consensus
Probab=83.51 E-value=94 Score=35.98 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=122.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce---E
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH---K 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~---~ 1123 (1332)
+..+.+......+-=+...+..|..-+.+.|.....+ ..+++...-|-..+.+..||.|.- .....+....-.- +
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~-davfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATC-DAVFRLWQENQSWTKER 275 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecc-cceeeeehhcccceecc
Confidence 4577777776655556666777887777655555444 345556666777777777776643 2344455443322 2
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce---------EEEEecCC-------------CC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR---------TVLVEEDL-------------AF 1181 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~---------~~l~~~~l-------------~~ 1181 (1332)
-++..+ +...-.-+|+..+|.++-.++ +.|++...++... .+++..++ +.
T Consensus 276 w~lgsg--rvqtacWspcGsfLLf~~sgs------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge 347 (445)
T KOG2139|consen 276 WILGSG--RVQTACWSPCGSFLLFACSGS------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE 347 (445)
T ss_pred eeccCC--ceeeeeecCCCCEEEEEEcCC------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence 223223 666777899999999998887 8899999877542 22221122 23
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEE-------EecCCCceEEEE--e---ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEY-------CDFFGRSRKIVI--S---KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~-------~d~dG~~~~~~~--~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
+..|+.|+.+.+|-++-.+.+.|+- +|..-+....+. . +.+|.-|+++-.+ .++.|.-.-|.+|.
T Consensus 348 aq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~---n~g~lLsiaWsTGr 424 (445)
T KOG2139|consen 348 AQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK---NEGRLLSIAWSTGR 424 (445)
T ss_pred cceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc---cCCcEEEEEeccCc
Confidence 6679999999999888776664442 222111111122 1 6778888772222 56677777788899
Q ss_pred EEEEEec
Q psy5806 1250 VVIAREK 1256 (1332)
Q Consensus 1250 V~~~~~~ 1256 (1332)
+-++..+
T Consensus 425 iq~ypl~ 431 (445)
T KOG2139|consen 425 IQRYPLT 431 (445)
T ss_pred eEeeeeE
Confidence 8888764
No 169
>KOG0293|consensus
Probab=83.50 E-value=1e+02 Score=36.30 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=112.3
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-CCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-DTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~ 1124 (1332)
.+..|.++|.+++|.-- .....+..-+...|..... ...+ ..++..-|--+.+-. +++.+....|..+++||....
T Consensus 271 ~V~yi~wSPDdryLlaC-g~~e~~~lwDv~tgd~~~~-y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLAC-GFDEVLSLWDVDTGDLRHL-YPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred ceEEEEECCCCCeEEec-CchHheeeccCCcchhhhh-cccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhh
Confidence 35678889988766432 2333455556553333222 2222 123444444444444 577777788999999998543
Q ss_pred EEecC--CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1125 ILVND--LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1125 ~~~~~--~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
- +.+ ......||+.+...+|+-.... .+|.-.+.......-++.+. .....+.|. +++++...+...+
T Consensus 348 ~-W~gvr~~~v~dlait~Dgk~vl~v~~d-------~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 348 N-WEGVRDPKVHDLAITYDGKYVLLVTVD-------KKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQ 417 (519)
T ss_pred c-ccccccceeEEEEEcCCCcEEEEEecc-------cceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccC
Confidence 3 222 2456789998877788777643 45666666544443344432 334567777 5677788888888
Q ss_pred eEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEe
Q psy5806 1203 RIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~ 1268 (1332)
.|.--|+. .++ .+.. .+|-.|-=+..|=-.-.++.+.-+-++.++|+.-++.+| +-+.++.
T Consensus 418 ei~LWDl~-e~~-lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~Ls 479 (519)
T KOG0293|consen 418 EIHLWDLE-ENK-LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLS 479 (519)
T ss_pred eeEEeecc-hhh-HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeec
Confidence 88888886 221 1111 111111100000001122233334467788888888887 5444443
No 170
>smart00284 OLF Olfactomedin-like domains.
Probab=83.47 E-value=38 Score=37.86 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=82.2
Q ss_pred cEEEEEeCCCCeEEEEECCCCCCc-eeEee-cC----------CCCceeeEEEecCCe-EEEEcCCCceEEEEeeCCceE
Q psy5806 1057 NLIYFADMRSGNLRTFDMSDSTRI-KPIPL-MN----------DTIRDNFVIDWVANN-IYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1057 ~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~-~~----------~~~p~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
+.||+.-.....|.|++|.+.+-. +..+. .+ ..+=-.||+|..+=. ||-+..+.+.|.+.+||-...
T Consensus 84 gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL 163 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATL 163 (255)
T ss_pred ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccc
Confidence 789998877889999999854432 22221 11 112247999954333 455566678899899986544
Q ss_pred EE--Ee-cCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEE-EEecCCCceEE---EEecCCCCcceEEEecCCCEEE
Q psy5806 1124 KI--LV-NDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIE-KVYLDGSYRTV---LVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1124 ~~--~~-~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~-r~~ldG~~~~~---l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
.+ .+ +...++.+ =|+= .-|.||.++... ....+|. ..+...+.... .+......-..|.-.+.+++||
T Consensus 164 ~ve~tW~T~~~k~sa~naFm-vCGvLY~~~s~~---~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY 239 (255)
T smart00284 164 TIENTWITTYNKRSASNAFM-ICGILYVTRSLG---SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLY 239 (255)
T ss_pred eEEEEEEcCCCcccccccEE-EeeEEEEEccCC---CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEE
Confidence 44 22 33333332 1121 258999998633 2234444 33444332211 1222223334477788999999
Q ss_pred EEEcCCCeEEEEec
Q psy5806 1196 WADSTNKRIEYCDF 1209 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~ 1209 (1332)
.=|- +.+..+++
T Consensus 240 ~wdn--g~~l~Y~v 251 (255)
T smart00284 240 AWNN--GHLVHYDI 251 (255)
T ss_pred EEeC--CeEEEEEE
Confidence 7654 44555544
No 171
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=83.27 E-value=0.81 Score=33.64 Aligned_cols=25 Identities=32% Similarity=0.902 Sum_probs=20.4
Q ss_pred CCCc--cccccCCCCccccCCCCeeEc
Q psy5806 977 GGCS--HLCLRNPTNFTCACPTGILLS 1001 (1332)
Q Consensus 977 GgCs--hlCl~~p~~~~C~Cp~g~~l~ 1001 (1332)
+.|. +.|..+++++.|.|+.||...
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 3555 789999989999999999753
No 172
>KOG0289|consensus
Probab=83.08 E-value=1.1e+02 Score=36.33 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=106.0
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~ 1125 (1332)
+.++..++.+.++.|++ +.+.+--.++.+|....++..... -....+++.+ .+.||.+....+.+.++++.......
T Consensus 306 V~~ls~h~tgeYllsAs-~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSAS-NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ceeeeeccCCcEEEEec-CCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccc
Confidence 56777888888888887 444443334454544444433211 1346677774 68888888888899999997543222
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
+..-......|++.. +||-..+.... ..|.--+|--. +...+...+....+.+.+|..+..|-.+ ...=.
T Consensus 384 ~Fpght~~vk~i~FsE-NGY~Lat~add------~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~ 455 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSE-NGYWLATAADD------GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQ 455 (506)
T ss_pred cCCCCCCceeEEEecc-CceEEEEEecC------CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeE
Confidence 322234567888876 88776666544 33544455222 2233322222346778899777766555 33333
Q ss_pred EEEEecCCCceEEEEe----ecccceEEEecCCccccccEEEEEECCCCEEEEE
Q psy5806 1204 IEYCDFFGRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1204 I~~~d~dG~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~ 1253 (1332)
|..++-...+.+.+.. ...-.++.+ -+..-|.++-..++++++
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~F-------g~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRF-------GEHAQYLASTSMDAILRL 502 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeee-------cccceEEeeccchhheEE
Confidence 4444433444444433 223345555 444456665555555443
No 173
>PTZ00420 coronin; Provisional
Probab=82.32 E-value=1.5e+02 Score=37.52 Aligned_cols=159 Identities=8% Similarity=0.002 Sum_probs=90.4
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCc-eEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQ-HKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~-~~~ 1124 (1332)
.+..++|++....++.+-...+.|...++..+.....+ .....+..+++++.+..| .+....+.|.++++... ...
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--NMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--ecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCCCcEEE
Confidence 46788999988777776667788998898754432222 123457888888766655 44445668999998743 333
Q ss_pred EEecCCCCc-eEEEE-----cCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceE--EEecCCCEEE
Q psy5806 1125 ILVNDLMEP-LAIAV-----YPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNEL--AIDFKQRRLF 1195 (1332)
Q Consensus 1125 ~~~~~~~~P-~~iav-----dp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~gl--aiD~~~~~LY 1195 (1332)
.+.. .... ...++ .+..++|.-+.... .....|..-++... .....+.-+ ..+..| ..|+..+.||
T Consensus 204 tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld-~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 204 SFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSID-NASAPLIPHYDESTGLIY 278 (568)
T ss_pred EEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEec-CCccceEEeeeCCCCCEE
Confidence 2321 1111 11222 24445555544322 01123444455421 111122111 122233 4677889999
Q ss_pred EEEcCCCeEEEEecCCC
Q psy5806 1196 WADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~ 1212 (1332)
.+=.+.+.|...++...
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99888999999998643
No 174
>KOG4649|consensus
Probab=82.13 E-value=37 Score=37.43 Aligned_cols=134 Identities=16% Similarity=0.059 Sum_probs=80.0
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
-.=+|||..+++|||-..-..+|+ ++.. +..++ |++-=.+|.|||-+... ..+++....-++.
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE-----~sa~--vvgdf-----VV~GCy~g~lYfl~~~t-----Gs~~w~f~~~~~v 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIE-----CSAI--VVGDF-----VVLGCYSGGLYFLCVKT-----GSQIWNFVILETV 95 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceee-----eeeE--EECCE-----EEEEEccCcEEEEEecc-----hhheeeeeehhhh
Confidence 345899999999999765555664 2211 22232 66666789999999765 3466665443322
Q ss_pred eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCc-cccccEEEEEECCCCE
Q psy5806 1171 RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPG-KAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1171 ~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~-~~~~~~lYwtd~~~~~ 1249 (1332)
. . --.+|++++.||- -++++.....|+....- +...+-|-++-+ ||- +.-.+.||+|- .+|.
T Consensus 96 k--------~---~a~~d~~~glIyc-gshd~~~yalD~~~~~c--VykskcgG~~f~--sP~i~~g~~sly~a~-t~G~ 158 (354)
T KOG4649|consen 96 K--------V---RAQCDFDGGLIYC-GSHDGNFYALDPKTYGC--VYKSKCGGGTFV--SPVIAPGDGSLYAAI-TAGA 158 (354)
T ss_pred c--------c---ceEEcCCCceEEE-ecCCCcEEEecccccce--EEecccCCceec--cceecCCCceEEEEe-ccce
Confidence 1 1 1356777777665 46778888877753221 111111111111 111 22578899987 5689
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
|.+++|.++
T Consensus 159 vlavt~~~~ 167 (354)
T KOG4649|consen 159 VLAVTKNPY 167 (354)
T ss_pred EEEEccCCC
Confidence 999999877
No 175
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.09 E-value=1e+02 Score=35.44 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=106.7
Q ss_pred EEEEEeC-CCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEEcC----CCceEEEEeeCCc
Q psy5806 1048 IFFDYHY-SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYIDS----QMHTINVARSDGQ 1121 (1332)
Q Consensus 1048 ~~id~d~-~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~td~----~~~~I~v~~ldG~ 1121 (1332)
.+++.++ ....|.|+-........++..+|.....+.......-+| =+++..++.||.|.. ..+.|-|.+....
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3444454 223344444333445555555443333332222222222 345667899999843 3678999999966
Q ss_pred eEEE--EecCCCCceEEEEcCCCcEEEEEecCCCC--CCC---------CCcEEEE-ecCCCceEEE-EecCCC--Ccce
Q psy5806 1122 HKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYD--NSP---------TTKIEKV-YLDGSYRTVL-VEEDLA--FPNE 1184 (1332)
Q Consensus 1122 ~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~--~~~---------~~~I~r~-~ldG~~~~~l-~~~~l~--~p~g 1184 (1332)
.+++ ..+.--.|..|.+.|....|.+++-|-.. +.+ .+.|..+ ..+|.-.... +..++. ...-
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6655 54544679999999966599999855311 111 1334443 2234322221 111111 2334
Q ss_pred EEEecCCCEEEEEEcCCCe-------EEEEecCCCceEEE-Ee-------ecccceEEEecCCccccccEEEEEECCCCE
Q psy5806 1185 LAIDFKQRRLFWADSTNKR-------IEYCDFFGRSRKIV-IS-------KVAPYGLSVRQSPGKAFIVELYWTDWEAMS 1249 (1332)
Q Consensus 1185 laiD~~~~~LY~~d~~~~~-------I~~~d~dG~~~~~~-~~-------~~~P~glav~~~~~~~~~~~lYwtd~~~~~ 1249 (1332)
|+++.+ +.+.++-...+. |...+. |+..+.+ .+ ....-+|++ +..++.+..|-...+.
T Consensus 168 La~~~~-G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~-----~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 168 LAVDGD-GTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAA-----DRDGRLIAVTSPRGGR 240 (305)
T ss_pred EEecCC-CcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEE-----eCCCCEEEEECCCCCE
Confidence 677643 555555443221 111111 1111111 11 234456777 3445689999999999
Q ss_pred EEEEEecCC
Q psy5806 1250 VVIAREKSD 1258 (1332)
Q Consensus 1250 V~~~~~~~g 1258 (1332)
+...+..+|
T Consensus 241 ~~~~d~~tg 249 (305)
T PF07433_consen 241 VAVWDAATG 249 (305)
T ss_pred EEEEECCCC
Confidence 999998888
No 176
>KOG4289|consensus
Probab=82.03 E-value=26 Score=46.74 Aligned_cols=35 Identities=34% Similarity=0.971 Sum_probs=27.2
Q ss_pred cccCCCCccee--eeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSH--ICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~Csh--lCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.|-|..|.|+. .|++.-++|+|.||.||- ++.|..
T Consensus 1501 k~fCdsg~C~n~g~CvnrWg~~~C~CP~~fg----gk~c~~ 1537 (2531)
T KOG4289|consen 1501 KNFCDSGQCSNGGTCVNRWGGFSCECPLGFG----GKGCCQ 1537 (2531)
T ss_pred hcccCCCccCCCCeeecccCcEeecCccccC----Ccchhh
Confidence 45666666753 899999999999999985 666754
No 177
>KOG0293|consensus
Probab=82.02 E-value=77 Score=37.17 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=97.7
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
....|+..+..+.| +|......+...+.+ |..+.....+ ...+...|--| .|.=|++... ...|..-++|
T Consensus 271 ~V~yi~wSPDdryL-laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~------dr~i~~wdlD 342 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYL-LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSP------DRTIIMWDLD 342 (519)
T ss_pred ceEEEEECCCCCeE-EecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCC------CCcEEEecCC
Confidence 34557777777877 455445557777777 5444443333 25677788888 5666777543 3779999999
Q ss_pred CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECC
Q psy5806 1168 GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWE 1246 (1332)
Q Consensus 1168 G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~ 1246 (1332)
|.....--.........|++.++++.+|.... ..+|.-++.....-+-+++ -....++.+ .-++.+...+-.
T Consensus 343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~~~dr~lise~~~its~~i------S~d~k~~LvnL~ 415 (519)
T KOG0293|consen 343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREARVDRGLISEEQPITSFSI------SKDGKLALVNLQ 415 (519)
T ss_pred cchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhhhhhhccccccCceeEEEE------cCCCcEEEEEcc
Confidence 97743332222345568999999999998874 4578777775443332444 444456666 235667777878
Q ss_pred CCEEEEEEec
Q psy5806 1247 AMSVVIAREK 1256 (1332)
Q Consensus 1247 ~~~V~~~~~~ 1256 (1332)
.++|+.-|..
T Consensus 416 ~qei~LWDl~ 425 (519)
T KOG0293|consen 416 DQEIHLWDLE 425 (519)
T ss_pred cCeeEEeecc
Confidence 8888877764
No 178
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.66 E-value=1.5e+02 Score=37.37 Aligned_cols=69 Identities=7% Similarity=-0.133 Sum_probs=45.6
Q ss_pred eEEEecCCCEEEEEEcC---------------CCeEEEEecCCCceEEEEe-----------ecccceEEEecCCccccc
Q psy5806 1184 ELAIDFKQRRLFWADST---------------NKRIEYCDFFGRSRKIVIS-----------KVAPYGLSVRQSPGKAFI 1237 (1332)
Q Consensus 1184 glaiD~~~~~LY~~d~~---------------~~~I~~~d~dG~~~~~~~~-----------~~~P~glav~~~~~~~~~ 1237 (1332)
.+++|++.++|||--.+ ++.|...|.+....+-... ...|.=+.+ +.+
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~------~~~ 311 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL------KKD 311 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe------ccC
Confidence 36999999999998633 3478888887433222221 234433433 123
Q ss_pred c---EEEEEECCCCEEEEEEecCC
Q psy5806 1238 V---ELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1238 ~---~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+ .+...-..++-++.+|..+|
T Consensus 312 G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 312 GKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CcEEEEEEEeCCCceEEEEECCCC
Confidence 3 37767778999999999998
No 179
>KOG1407|consensus
Probab=81.62 E-value=92 Score=34.54 Aligned_cols=227 Identities=14% Similarity=0.018 Sum_probs=119.8
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKIL 1126 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~ 1126 (1332)
+..+.+++.+.-+|.+-.....|+..++..+.....+...+ ++ .-++..+.++.+-+.+. .+.|..++.....+..-
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-en-i~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-EN-INITWSPDGEYIAVGNK-DDRITFIDARTYKIVNE 143 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cc-eEEEEcCCCCEEEEecC-cccEEEEEecccceeeh
Confidence 45667888777788877777888888876444333333211 11 12223333333333332 33454444432222211
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
........-|+-. ..+.|||...|. +.|+....-.-.+..-+...-..--.|.+|++++ |+|-...+.+.+
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Fflt~Gl------G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvS 214 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFLTNGL------GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVS 214 (313)
T ss_pred hcccceeeeeeec-CCCCEEEEecCC------ceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceee
Confidence 1222345667777 567888887665 6777766653333222221112222466777665 666655555544
Q ss_pred E-ecCCCceEEEEe-eccc-ceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeEEEEeCC
Q psy5806 1207 C-DFFGRSRKIVIS-KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISAS 1283 (1332)
Q Consensus 1207 ~-d~dG~~~~~~~~-~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 1283 (1332)
. |++---.+-.++ +..| ..|++ .+++++.=+-.+..-|-.++..|| ..+..+.- .+++--++-++.
T Consensus 215 LWD~~ELiC~R~isRldwpVRTlSF------S~dg~~lASaSEDh~IDIA~vetG---d~~~eI~~--~~~t~tVAWHPk 283 (313)
T KOG1407|consen 215 LWDVDELICERCISRLDWPVRTLSF------SHDGRMLASASEDHFIDIAEVETG---DRVWEIPC--EGPTFTVAWHPK 283 (313)
T ss_pred ccChhHhhhheeeccccCceEEEEe------ccCcceeeccCccceEEeEecccC---CeEEEeec--cCCceeEEecCC
Confidence 3 333222222233 4444 46666 345665556678889999999999 55555543 344555555665
Q ss_pred CCCCCCCCCCCCC
Q psy5806 1284 KQLTWNPCAQDNG 1296 (1332)
Q Consensus 1284 ~q~~~n~C~~~ng 1296 (1332)
+....-.|...|+
T Consensus 284 ~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 284 RPLLAYACDDKDG 296 (313)
T ss_pred CceeeEEecCCCC
Confidence 5445555555443
No 180
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=81.25 E-value=12 Score=44.62 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=52.9
Q ss_pred CCceEEEEe-cCC-CeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCC----CCeEEEEec
Q psy5806 553 SEPRDIAVN-PIG-GIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVG----LKTIEFTNL 626 (1332)
Q Consensus 553 ~~P~~iavd-p~~-G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~----~~~I~~~~~ 626 (1332)
.....+.+- +.. +++++++...-.+|....++|...+.|......--.-+.+|..+++||+.-.. ...++++++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 344455543 444 45555554345789999999998665544332211357889999999999775 458999999
Q ss_pred C-CCceEEE
Q psy5806 627 D-GTRKQTL 634 (1332)
Q Consensus 627 d-G~~~~~~ 634 (1332)
+ |...+.|
T Consensus 315 ~~~~~~~~L 323 (353)
T PF00930_consen 315 DSGGEPKCL 323 (353)
T ss_dssp TETTEEEES
T ss_pred CCCCCeEec
Confidence 9 7655544
No 181
>KOG0277|consensus
Probab=80.63 E-value=68 Score=35.37 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=98.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEe--cCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDW--VANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw--~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
...++++......+-.+-.+.|+++..++.-.+. .|....-..-+=.++|| +.|..+++.+..++|...+.+ +..
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ceeEeeecCCCcceEEEEecCceEEEeccCCCCc--chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 3567788766555555556888888887442211 22211222334456666 467788888888999888887 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEec--CCCEEEEEEcC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF--KQRRLFWADST 1200 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~--~~~~LY~~d~~ 1200 (1332)
..+..+...-.+..+.+|.-+.||-+..+. +.-+|+-++..|+...+.+. + -..|..|. -+..+..+-..
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd----~~l~lwdvr~~gk~~~i~ah-~---~Eil~cdw~ky~~~vl~Tg~v 211 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGD----GTLRLWDVRSPGKFMSIEAH-N---SEILCCDWSKYNHNVLATGGV 211 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCC----ceEEEEEecCCCceeEEEec-c---ceeEeecccccCCcEEEecCC
Confidence 455545555688899999999998888776 56788888888877653332 1 23466665 33445555455
Q ss_pred CCeEEEEecC
Q psy5806 1201 NKRIEYCDFF 1210 (1332)
Q Consensus 1201 ~~~I~~~d~d 1210 (1332)
.+.|..-|+.
T Consensus 212 d~~vr~wDir 221 (311)
T KOG0277|consen 212 DNLVRGWDIR 221 (311)
T ss_pred CceEEEEehh
Confidence 6666666663
No 182
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=80.52 E-value=1.4 Score=32.13 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=20.6
Q ss_pred CCCccccccCCCCCceeeCCCCccccCCC
Q psy5806 671 GGCSHLCLIAPKDGIRCVCPAGNLLREDR 699 (1332)
Q Consensus 671 ggCs~lCl~~~~~~~~C~Cp~g~~l~~d~ 699 (1332)
..|+..|-+.. ..+|.||.||.|+++.
T Consensus 6 t~CpA~CDpn~--~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 6 TECPADCDPNS--PGQCFCPEGYILDEGS 32 (34)
T ss_pred ccCCCccCCCC--CCceeCCCceEecCCc
Confidence 46788886644 5699999999997653
No 183
>KOG0285|consensus
Probab=80.39 E-value=1.1e+02 Score=35.32 Aligned_cols=174 Identities=6% Similarity=-0.003 Sum_probs=95.3
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
+.-+..+|+||.+ .-|.+.....+|...++..|.-. ..+.--+....|+||....-.||- -.....|.-+||.-...
T Consensus 151 lgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~Lk-ltltGhi~~vr~vavS~rHpYlFs-~gedk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 151 LGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLK-LTLTGHIETVRGVAVSKRHPYLFS-AGEDKQVKCWDLEYNKV 227 (460)
T ss_pred cceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEE-EeecchhheeeeeeecccCceEEE-ecCCCeeEEEechhhhh
Confidence 3457899999984 56777778888999998844322 222224568899999965555643 34456777777753321
Q ss_pred -EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 -KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 -~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
+.-..-+...+.|+++|....|+-..... ..+|+ +|-.......+..--.....+..-+.+..+|=. +...
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDs-----t~RvW--DiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~-S~D~ 299 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDS-----TIRVW--DIRTRASVHVLSGHTNPVASVMCQPTDPQVITG-SHDS 299 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcc-----eEEEe--eecccceEEEecCCCCcceeEEeecCCCceEEe-cCCc
Confidence 11234456789999999766664433221 23333 443333222222111122233333344555533 4455
Q ss_pred eEEEEecC-CCceEEEEe-ecccceEEE
Q psy5806 1203 RIEYCDFF-GRSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1203 ~I~~~d~d-G~~~~~~~~-~~~P~glav 1228 (1332)
.|.--|+. |....++.. ...-.+|++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~l 327 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCL 327 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEec
Confidence 56655653 444444444 444455555
No 184
>PTZ00421 coronin; Provisional
Probab=80.08 E-value=1.7e+02 Score=36.57 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=108.8
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
.+..++|++..+.++++-...+.|...++..+.....+ .........|++.+.+..| ++-...+.|.++++. |+...
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~lL-atgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGSLL-CTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCCEE-EEecCCCEEEEEECCCCcEEE
Confidence 46789999876556666667889999998754333222 2223457788888755544 565667799999986 44333
Q ss_pred EEecC-CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEEecCCC-CcceEEEecCCCEEEEEEcCC
Q psy5806 1125 ILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLVEEDLA-FPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1125 ~~~~~-~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~~~~l~-~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.+... -.....+...+..+.|+-+.... .....|..-++.... ...+...+.. ...-..+|++++.||.+-.+.
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~---s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSK---SQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCC---CCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence 33221 11233455666556665443221 112345555554222 1112211111 111235688888899886678
Q ss_pred CeEEEEecCCCceEEEEe--eccc-ceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1202 KRIEYCDFFGRSRKIVIS--KVAP-YGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1202 ~~I~~~d~dG~~~~~~~~--~~~P-~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.|...|+.......... ...| .|+++ .-. +-.|....+|.|+-|.+.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~s~~~~~g~~~-------~pk--~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYSSVEPHKGLCM-------MPK--WSLDTRKCEIARFYALTY 332 (493)
T ss_pred CeEEEEEeeCCceEEEeeccCCCCCcceEe-------ccc--ccccccceeeeEEEEecC
Confidence 889999997544322222 2222 45555 221 224445556666665554
No 185
>KOG2055|consensus
Probab=78.88 E-value=1.5e+02 Score=35.42 Aligned_cols=102 Identities=11% Similarity=0.155 Sum_probs=53.9
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCce
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRD 1092 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~ 1092 (1332)
+||+++-++.-|..++..+... +..+.--..+.++.|+...++||.+. ..|.|+..+++...-.......+.-.-+
T Consensus 316 ~fia~~G~~G~I~lLhakT~el---i~s~KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gt 391 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKEL---ITSFKIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGT 391 (514)
T ss_pred CeEEEcccCceEEeehhhhhhh---hheeeeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEeecCcccee
Confidence 4666665444255444433222 22222223467889998877776664 6778999888743222233323332334
Q ss_pred eeEEEecCCeEEEEcCCCceEEEEeeC
Q psy5806 1093 NFVIDWVANNIYYIDSQMHTINVARSD 1119 (1332)
Q Consensus 1093 glAvDw~~~~LY~td~~~~~I~v~~ld 1119 (1332)
.|+... ++.++.+.+..+.|.+.+.+
T Consensus 392 s~~~S~-ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 392 SLCISL-NGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred eeeecC-CCceEEeccCcceEEEeccc
Confidence 455553 33344445556666666643
No 186
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=78.62 E-value=1.8e+02 Score=36.19 Aligned_cols=22 Identities=0% Similarity=-0.287 Sum_probs=19.8
Q ss_pred cccEEEEEECCCCEEEEEEecCC
Q psy5806 1236 FIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1236 ~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.++.||+.+ ..+.|+.+++.+|
T Consensus 405 ~g~~v~~g~-~dG~l~ald~~tG 426 (488)
T cd00216 405 AGNLVFAGA-ADGYFRAFDATTG 426 (488)
T ss_pred cCCeEEEEC-CCCeEEEEECCCC
Confidence 889999988 6789999999999
No 187
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=78.37 E-value=1.6e+02 Score=35.53 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=105.2
Q ss_pred EEEEeCCCcEEEEEeCCC----------CeEEEEECCCCCCc-eeEeecCCCCce---eeEEEecCCeEEEEcCC--C-c
Q psy5806 1049 FFDYHYSKNLIYFADMRS----------GNLRTFDMSDSTRI-KPIPLMNDTIRD---NFVIDWVANNIYYIDSQ--M-H 1111 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~----------~~I~~~~l~~g~~~-~~i~~~~~~~p~---glAvDw~~~~LY~td~~--~-~ 1111 (1332)
.+.|...+..+|++.... ..|++..+..+... ..++ ..-..+. ++..+..++.|++.-.. . .
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTSES 252 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSSEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEccccCC
Confidence 388999888999987543 24788886532222 2344 3333333 67778778888875332 3 5
Q ss_pred eEEEEeeCCc-----eEEEEecCCCCceEEEEcCCCcEEEE-EecCCCCCCCCCcEEEEecCCCc----eEEEEecCC-C
Q psy5806 1112 TINVARSDGQ-----HKKILVNDLMEPLAIAVYPRRGLLFY-SHWGLYDNSPTTKIEKVYLDGSY----RTVLVEEDL-A 1180 (1332)
Q Consensus 1112 ~I~v~~ldG~-----~~~~~~~~~~~P~~iavdp~~g~Lyw-td~~~~~~~~~~~I~r~~ldG~~----~~~l~~~~l-~ 1180 (1332)
.+.+++++.. ..+.+......-...+-+. ++.+|+ |+.+. +..+|.+++++... ..+++...- .
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a----~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA----PNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC----CCcEEEEecccccccccceeEEcCCCCce
Confidence 6777888753 2333444333333323222 555554 66443 56899999997765 235554321 1
Q ss_pred CcceEEEecCCCEEEEEEcC--CCeEEEEecC-CCceEEEEeecccceEEEecCCccccccEEEEEE--C-CCCEEEEEE
Q psy5806 1181 FPNELAIDFKQRRLFWADST--NKRIEYCDFF-GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTD--W-EAMSVVIAR 1254 (1332)
Q Consensus 1181 ~p~glaiD~~~~~LY~~d~~--~~~I~~~d~d-G~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd--~-~~~~V~~~~ 1254 (1332)
...++.+ .++.|++.... ..+|..++++ |... ..+......++... +. +...+.++++- + .-.+|+++|
T Consensus 328 ~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g~v~~~-~~-~~~~~~~~~~~ss~~~P~~~y~~d 402 (414)
T PF02897_consen 328 SLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES-REIPLPEAGSVSGV-SG-DFDSDELRFSYSSFTTPPTVYRYD 402 (414)
T ss_dssp EEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE-EEEESSSSSEEEEE-ES--TT-SEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE-eeecCCcceEEecc-CC-CCCCCEEEEEEeCCCCCCEEEEEE
Confidence 3445554 46777777654 4568888888 4332 22221111112111 11 22344454443 2 456888889
Q ss_pred ecCC
Q psy5806 1255 EKSD 1258 (1332)
Q Consensus 1255 ~~~g 1258 (1332)
..++
T Consensus 403 ~~t~ 406 (414)
T PF02897_consen 403 LATG 406 (414)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 8887
No 188
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=78.26 E-value=1.1e+02 Score=33.66 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=47.3
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee----EeecCCCCceeeEEEecCCeEEEEcCCCceE
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP----IPLMNDTIRDNFVIDWVANNIYYIDSQMHTI 1113 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~----i~~~~~~~p~glAvDw~~~~LY~td~~~~~I 1113 (1332)
....||||-|.+++||=.. ..++|+.++..+|.-..+ +...-.+.+.|+.|++...+|.+.....+..
T Consensus 27 e~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNl 98 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLG-STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNL 98 (236)
T ss_pred CeEEEEEeecCCCCEEEEe-CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEE
Confidence 4578999999999999884 678999999775543222 1111123577888888888888875544333
No 189
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=77.12 E-value=1.7e+02 Score=34.94 Aligned_cols=177 Identities=14% Similarity=0.018 Sum_probs=93.7
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCceeEeecCC----CCceeeEEEecCCeEEEEcCCCceEEEEee-CCceEEE--Eec
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND----TIRDNFVIDWVANNIYYIDSQMHTINVARS-DGQHKKI--LVN 1128 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~----~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG~~~~~--~~~ 1128 (1332)
+++||+.. ..+.|+.+++.+|......-.... ......++. ++.+|+... .+.+..+++ +|+..-. +..
T Consensus 145 ~~~v~v~~-~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~-~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 145 NGLVVVRT-NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFA-GGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred CCEEEEEC-CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECC-CCEEEEEEccCCCEeeeecccc
Confidence 35666654 456677777665543322211100 000112333 467777654 456777776 3653211 110
Q ss_pred CCC---------CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc
Q psy5806 1129 DLM---------EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1129 ~~~---------~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
... .....+++ ++.+|.+.... .++..++.... .+.......+..++++ +++||+.+
T Consensus 221 ~~g~~~~~~~~~~~~~p~~~--~~~vy~~~~~g-------~l~a~d~~tG~--~~W~~~~~~~~~p~~~--~~~vyv~~- 286 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVVD--GGQVYAVSYQG-------RVAALDLRSGR--VLWKRDASSYQGPAVD--DNRLYVTD- 286 (377)
T ss_pred CCCCCchhhhhccCCccEEE--CCEEEEEEcCC-------EEEEEECCCCc--EEEeeccCCccCceEe--CCEEEEEC-
Confidence 000 00111232 57899987543 58888874322 2333223334445554 78999985
Q ss_pred CCCeEEEEecC-CCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1200 TNKRIEYCDFF-GRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1200 ~~~~I~~~d~d-G~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
..+.|..+|.+ |...-.... .....+.++ .+++||..+ .++.|+.++..+|
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-------~g~~l~~~~-~~G~l~~~d~~tG 340 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV-------VGGYLVVGD-FEGYLHWLSREDG 340 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE-------ECCEEEEEe-CCCEEEEEECCCC
Confidence 56889999985 432211111 111223456 778999887 5688999998888
No 190
>KOG1274|consensus
Probab=76.89 E-value=77 Score=40.88 Aligned_cols=150 Identities=17% Similarity=0.185 Sum_probs=91.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCC-CCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDS-TRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKK 1124 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g-~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~ 1124 (1332)
-..|.||+.+..|+..+ .++.|+..+-.+- ...+.+-. ......+||.+ .. .+.+....+.|.+...+ |..-.
T Consensus 16 ~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~--s~-~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY--SN-HFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred eEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc-cCceeEEEeec--cc-ceEEeeccceEEEeeCCCCCccc
Confidence 46899999999888877 5667887764432 22333321 23356778877 33 55677778899999987 44333
Q ss_pred EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC-CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1125 ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD-GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1125 ~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld-G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
++..-....+.++|+. .|.+-.+.... -.|-.++++ +++..++-. --....+|.+|++++.|=++. -+|.
T Consensus 91 iL~Rftlp~r~~~v~g-~g~~iaagsdD------~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss-~dG~ 161 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSG-SGKMIAAGSDD------TAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSS-CDGK 161 (933)
T ss_pred eeeeeeccceEEEEec-CCcEEEeecCc------eeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEe-cCce
Confidence 3432223347788887 55554443332 346666664 444444332 223345778887777776664 5678
Q ss_pred EEEEecC
Q psy5806 1204 IEYCDFF 1210 (1332)
Q Consensus 1204 I~~~d~d 1210 (1332)
+...+++
T Consensus 162 v~iw~~~ 168 (933)
T KOG1274|consen 162 VQIWDLQ 168 (933)
T ss_pred EEEEEcc
Confidence 8888875
No 191
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=76.88 E-value=7.4 Score=46.23 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=38.1
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC------------------CCCceeeEEEecCCeEEEEcC
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN------------------DTIRDNFVIDWVANNIYYIDS 1108 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~------------------~~~p~glAvDw~~~~LY~td~ 1108 (1332)
+..|..+..++.||++....|.|+++++.+....+.+.... .+.|.=|.+.|.+++||||++
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 57888899999999999999999999998755544433211 134677888999999999975
No 192
>KOG4328|consensus
Probab=76.49 E-value=24 Score=41.68 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=93.1
Q ss_pred eEEEEEeCCC-cEEEEEeCCCCeEEEEECCCCCCceeEeec--CCCCceeeEEEecCCeEEEEcCCCceEEEEee--CCc
Q psy5806 1047 SIFFDYHYSK-NLIYFADMRSGNLRTFDMSDSTRIKPIPLM--NDTIRDNFVIDWVANNIYYIDSQMHTINVARS--DGQ 1121 (1332)
Q Consensus 1047 ~~~id~d~~~-~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~--~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l--dG~ 1121 (1332)
+.+|.|.+.+ .+||-+ ...|+|+..+++ +.-.+++... ....-.++.+.-..+.+|+.+... ...++++ +|+
T Consensus 237 Vs~l~F~P~n~s~i~ss-SyDGtiR~~D~~-~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s 313 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSS-SYDGTIRLQDFE-GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGS 313 (498)
T ss_pred ccceEecCCChhheeee-ccCceeeeeeec-chhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCc
Confidence 5677888776 455544 488999999988 4444444433 222345666666678888877544 5666665 454
Q ss_pred eEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCC---CcceEEEecCCCEEEEEE
Q psy5806 1122 HKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLA---FPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1122 ~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~---~p~glaiD~~~~~LY~~d 1198 (1332)
....+.---.+..+|++.|..-+++-|.... .+.+|+-..-=+.....++.+ +. ..+..-+.+.++.| ++.
T Consensus 314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D----~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~gtl-~TT 387 (498)
T KOG4328|consen 314 EYENLRLHKKKITSVALNPVCPWFLATASLD----QTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGGTL-LTT 387 (498)
T ss_pred cchhhhhhhcccceeecCCCCchheeecccC----cceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCCce-Eee
Confidence 3322111123789999999998888886544 456777655433333223321 22 23445567777774 455
Q ss_pred cCCCeEEEEec
Q psy5806 1199 STNKRIEYCDF 1209 (1332)
Q Consensus 1199 ~~~~~I~~~d~ 1209 (1332)
...++|...|-
T Consensus 388 ~~D~~IRv~ds 398 (498)
T KOG4328|consen 388 CQDNEIRVFDS 398 (498)
T ss_pred ccCCceEEeec
Confidence 56677887665
No 193
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=76.27 E-value=46 Score=39.83 Aligned_cols=62 Identities=16% Similarity=0.300 Sum_probs=35.5
Q ss_pred CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec----C---------------CCCcceEEEecCCC
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE----D---------------LAFPNELAIDFKQR 1192 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~----~---------------l~~p~glaiD~~~~ 1192 (1332)
-|..|.++....+||+++|.. +.|.+.++.....-.++.. + ...|+-|.+..+++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~------GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGk 386 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLH------GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGK 386 (461)
T ss_dssp ----EEE-TTS-EEEEEETTT------TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSS
T ss_pred ceEeEEEccCCCEEEEEcccC------CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCe
Confidence 468888999999999999987 7788888866444333321 0 12477888999999
Q ss_pred EEEEEEc
Q psy5806 1193 RLFWADS 1199 (1332)
Q Consensus 1193 ~LY~~d~ 1199 (1332)
||||+++
T Consensus 387 RlYvTnS 393 (461)
T PF05694_consen 387 RLYVTNS 393 (461)
T ss_dssp EEEEE--
T ss_pred EEEEEee
Confidence 9999975
No 194
>KOG2139|consensus
Probab=74.94 E-value=1.7e+02 Score=33.98 Aligned_cols=188 Identities=13% Similarity=-0.008 Sum_probs=108.1
Q ss_pred ccceEEEEEeCC----------CcEEEEEeCCCCeEEE-EECCCCCCceeEe-ecCCCCceeeEEEecCCeEEEEcCCCc
Q psy5806 1044 YMSSIFFDYHYS----------KNLIYFADMRSGNLRT-FDMSDSTRIKPIP-LMNDTIRDNFVIDWVANNIYYIDSQMH 1111 (1332)
Q Consensus 1044 ~~~~~~id~d~~----------~~~lY~sd~~~~~I~~-~~l~~g~~~~~i~-~~~~~~p~glAvDw~~~~LY~td~~~~ 1111 (1332)
.+|+..+++-|. .+..+|++.......| +.+- ++....+. ..+-.....|+-...+..|-=+.....
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~-s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMM-STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccc-cccchhheeCCCCceeeEEEEcCCCCEEeecccCcc
Confidence 345555555444 4667787754432222 1111 22222222 222223456776666666655666677
Q ss_pred eEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe-c---CCCceEEEEecCCCCcceEE
Q psy5806 1112 TINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY-L---DGSYRTVLVEEDLAFPNELA 1186 (1332)
Q Consensus 1112 ~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~-l---dG~~~~~l~~~~l~~p~gla 1186 (1332)
.|.+.+.|-..... ...++....-+--+|...+||-|-... +.|+- . =-+++.++.. +...+-.
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~da--------vfrlw~e~q~wt~erw~lgs---grvqtac 287 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDA--------VFRLWQENQSWTKERWILGS---GRVQTAC 287 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccc--------eeeeehhcccceecceeccC---Cceeeee
Confidence 89999998544333 334555555677788666666554322 44433 2 2222333322 3555677
Q ss_pred EecCCCEEEEEEcCCCeEEEEecCCCc----------eEEEEe--------------ecccceEEEecCCccccccEEEE
Q psy5806 1187 IDFKQRRLFWADSTNKRIEYCDFFGRS----------RKIVIS--------------KVAPYGLSVRQSPGKAFIVELYW 1242 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~~~~I~~~d~dG~~----------~~~~~~--------------~~~P~glav~~~~~~~~~~~lYw 1242 (1332)
.++.+.+|.++-.+.-+|.+..++|+. +..++- ...|..||- |+.+.+|-+
T Consensus 288 WspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law-----DpsGeyLav 362 (445)
T KOG2139|consen 288 WSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW-----DPSGEYLAV 362 (445)
T ss_pred ecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE-----CCCCCEEEE
Confidence 899999999999999999999998762 222221 345677887 667777777
Q ss_pred EECCCC
Q psy5806 1243 TDWEAM 1248 (1332)
Q Consensus 1243 td~~~~ 1248 (1332)
+=-+..
T Consensus 363 ~fKg~~ 368 (445)
T KOG2139|consen 363 IFKGQS 368 (445)
T ss_pred EEcCCc
Confidence 765544
No 195
>KOG4441|consensus
Probab=73.41 E-value=99 Score=39.32 Aligned_cols=179 Identities=11% Similarity=0.077 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCC------CeEEEEECCCCCCceeEeecCCC-CceeeEEEecCCeEEEEcCC-----CceEEEEeeCCce
Q psy5806 1055 SKNLIYFADMRS------GNLRTFDMSDSTRIKPIPLMNDT-IRDNFVIDWVANNIYYIDSQ-----MHTINVARSDGQH 1122 (1332)
Q Consensus 1055 ~~~~lY~sd~~~------~~I~~~~l~~g~~~~~i~~~~~~-~p~glAvDw~~~~LY~td~~-----~~~I~v~~ldG~~ 1122 (1332)
.++.||++-..+ ..+.+++... +....+ .... .-.++++--..+.||+.-.. .+.|+..+.....
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~-a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPV-APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCC--Cceecc-CCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 356899886544 3355666442 222222 2222 22456677779999997443 3357777776543
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC--
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST-- 1200 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~-- 1200 (1332)
=..+..-...-.+.++-..+|+||.+--.........++++.+.....-+.+-.-. ..-.+..+-.-+++||..=..
T Consensus 408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSGFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-cccccceEEEECCEEEEECCccC
Confidence 22222111122446666678999999632211113477888888776654443211 111223333358999998443
Q ss_pred ---CCeEEEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEE
Q psy5806 1201 ---NKRIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTD 1244 (1332)
Q Consensus 1201 ---~~~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd 1244 (1332)
..+|+++|+.......+.. .....|+++ .++.||..-
T Consensus 487 ~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~-------~~~~ly~vG 529 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV-------LGGKLYAVG 529 (571)
T ss_pred CCccceEEEEcCCCCceeEcccCccccccccEEE-------ECCEEEEEe
Confidence 3458999998877777754 455567888 888898774
No 196
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.64 E-value=1.1e+02 Score=32.86 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=84.4
Q ss_pred ceeeEEEecCCeEEEEcC--CCceEEEEeeCCceEEE---EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1091 RDNFVIDWVANNIYYIDS--QMHTINVARSDGQHKKI---LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~--~~~~I~v~~ldG~~~~~---~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
..||.++ +++||.+-. +...|++.++++..... +......--||..- ..++|---|.+ +.=+..+
T Consensus 48 TQGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~e------gvaf~~d 117 (262)
T COG3823 48 TQGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKE------GVAFKYD 117 (262)
T ss_pred hcceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEecc------ceeEEEC
Confidence 4788888 778888743 36679999998432221 22111112345543 33555555655 3334444
Q ss_pred cCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC--CceEEEEe-eccc----ceEEEecCCcccccc
Q psy5806 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG--RSRKIVIS-KVAP----YGLSVRQSPGKAFIV 1238 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG--~~~~~~~~-~~~P----~glav~~~~~~~~~~ 1238 (1332)
.+.-+..--+.-. +.--||+-| ++.|..+| ++..+..-|... ..+++.+. ...| .-|.- .+|
T Consensus 118 ~~t~~~lg~~~y~-GeGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-------VdG 186 (262)
T COG3823 118 ADTLEELGRFSYE-GEGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-------VDG 186 (262)
T ss_pred hHHhhhhcccccC-CcceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceee-------ecc
Confidence 3332211111100 111256555 55566665 445566555542 23444444 3333 34566 789
Q ss_pred EEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1239 ELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1239 ~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
+||=--|.+.+|.|+++.+| +.+..+
T Consensus 187 ~lyANVw~t~~I~rI~p~sG---rV~~wi 212 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSG---RVVAWI 212 (262)
T ss_pred EEEEeeeeecceEEEcCCCC---cEEEEE
Confidence 99988899999999999999 665554
No 197
>KOG2110|consensus
Probab=72.23 E-value=1.9e+02 Score=33.64 Aligned_cols=146 Identities=10% Similarity=0.078 Sum_probs=85.7
Q ss_pred eCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEE---cCCCceEEEEeeCCceEE-EEe
Q psy5806 1053 HYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYI---DSQMHTINVARSDGQHKK-ILV 1127 (1332)
Q Consensus 1053 d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~t---d~~~~~I~v~~ldG~~~~-~~~ 1127 (1332)
--+.+||-+.= ...|+..++.+..-..+|- ..-.+|.| +|+.....+-|.+ +...+.|.++++..-... .+.
T Consensus 94 rmNr~RLvV~L--ee~IyIydI~~MklLhTI~-t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~ 170 (391)
T KOG2110|consen 94 RMNRKRLVVCL--EESIYIYDIKDMKLLHTIE-TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN 170 (391)
T ss_pred EEccceEEEEE--cccEEEEecccceeehhhh-ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE
Confidence 33445665542 2348888877543333332 12235665 5667667777776 334677888888744333 343
Q ss_pred cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec--CCCceEEEEecC--CCCcceEEEecCCCEEEEEEcCCCe
Q psy5806 1128 NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL--DGSYRTVLVEED--LAFPNELAIDFKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1128 ~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l--dG~~~~~l~~~~--l~~p~glaiD~~~~~LY~~d~~~~~ 1203 (1332)
.--.....||+++ .|.|.-|.... +.|.|+.. +|..... +..+ ......|+++++.+.|-.+ +.++.
T Consensus 171 aH~~~lAalafs~-~G~llATASeK------GTVIRVf~v~~G~kl~e-FRRG~~~~~IySL~Fs~ds~~L~~s-S~TeT 241 (391)
T KOG2110|consen 171 AHKGPLAALAFSP-DGTLLATASEK------GTVIRVFSVPEGQKLYE-FRRGTYPVSIYSLSFSPDSQFLAAS-SNTET 241 (391)
T ss_pred ecCCceeEEEECC-CCCEEEEeccC------ceEEEEEEcCCccEeee-eeCCceeeEEEEEEECCCCCeEEEe-cCCCe
Confidence 3334568899999 78887776543 67888876 3322221 2222 1234568899888865543 56777
Q ss_pred EEEEecC
Q psy5806 1204 IEYCDFF 1210 (1332)
Q Consensus 1204 I~~~d~d 1210 (1332)
|..+.++
T Consensus 242 VHiFKL~ 248 (391)
T KOG2110|consen 242 VHIFKLE 248 (391)
T ss_pred EEEEEec
Confidence 7766664
No 198
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=71.89 E-value=94 Score=36.91 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCeE-EEEcCC-CceEEEEeeCCceEEEEecCC-CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEe
Q psy5806 1100 ANNI-YYIDSQ-MHTINVARSDGQHKKILVNDL-MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVE 1176 (1332)
Q Consensus 1100 ~~~L-Y~td~~-~~~I~v~~ldG~~~~~~~~~~-~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~ 1176 (1332)
+++| |.++.. ...+..++|+....+-|..+. ....+..+.|....|||.-.+ ..|++++|+....+.|..
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEEEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEEEEE
Confidence 4443 334433 334666666644433343321 223366777888888776432 369999998888766654
Q ss_pred cCCCCc-ceE-EEecCCCEEEEEEc---------------------CCCeEEEEecCCCceEEEEe----ecc-------
Q psy5806 1177 EDLAFP-NEL-AIDFKQRRLFWADS---------------------TNKRIEYCDFFGRSRKIVIS----KVA------- 1222 (1332)
Q Consensus 1177 ~~l~~p-~gl-aiD~~~~~LY~~d~---------------------~~~~I~~~d~dG~~~~~~~~----~~~------- 1222 (1332)
..-.+- .|- +++.+..+|.-+.. -..+|.++|+.+..++++.. +.|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 322221 122 23433333322211 14578999998777777764 333
Q ss_pred cceEEE-ecCCccccccEEEEEECCCCEEEEEEe
Q psy5806 1223 PYGLSV-RQSPGKAFIVELYWTDWEAMSVVIARE 1255 (1332)
Q Consensus 1223 P~glav-~~~~~~~~~~~lYwtd~~~~~V~~~~~ 1255 (1332)
|.=|++ |.-|-+..+.+|+..+.....+..+.+
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 334444 444445555677777755555544443
No 199
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=33 Score=36.70 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=40.7
Q ss_pred EEecCCeEEEEcCCCceEEEEeeC-CceEEEE------------ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEE
Q psy5806 1096 IDWVANNIYYIDSQMHTINVARSD-GQHKKIL------------VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIE 1162 (1332)
Q Consensus 1096 vDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~------------~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~ 1162 (1332)
+.|+.+.||.-=....+|.+++.+ |+....+ ....+-++|||.+|.++++|.|-..= +.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~w------p~lf 254 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLW------PLLF 254 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcC------ceeE
Confidence 456666666433334456555555 3322221 12345689999999999999996432 5576
Q ss_pred EEecCC
Q psy5806 1163 KVYLDG 1168 (1332)
Q Consensus 1163 r~~ldG 1168 (1332)
-+.+++
T Consensus 255 EVk~~~ 260 (262)
T COG3823 255 EVKLDE 260 (262)
T ss_pred EEEecC
Confidence 666554
No 200
>KOG0281|consensus
Probab=71.57 E-value=47 Score=37.84 Aligned_cols=148 Identities=12% Similarity=0.072 Sum_probs=99.8
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
+.+.-++|| ++|.++-....+|..-+.++|....+.+ ......-+|.|. ++.+ ++.+....|.|++++....
T Consensus 238 GSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~--ng~m-vtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 238 GSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFS--NGYM-VTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred CcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEe--CCEE-EEecCCceeEEEeccCchHH
Confidence 346677787 4688888788889999988776665554 334567788877 5544 7888888999999985432
Q ss_pred ---EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC
Q psy5806 1124 ---KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200 (1332)
Q Consensus 1124 ---~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~ 1200 (1332)
.++.+-......+-+|. ++.++..+. ..|..-+++.-...-++ -++-.|||--.-+++|.++-+.
T Consensus 311 t~rrVLvGHrAaVNvVdfd~---kyIVsASgD------RTikvW~~st~efvRtl---~gHkRGIAClQYr~rlvVSGSS 378 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFDD---KYIVSASGD------RTIKVWSTSTCEFVRTL---NGHKRGIACLQYRDRLVVSGSS 378 (499)
T ss_pred HHHHHHhhhhhheeeecccc---ceEEEecCC------ceEEEEeccceeeehhh---hcccccceehhccCeEEEecCC
Confidence 22333333445555554 456666665 44555555444432222 2567799988889999999999
Q ss_pred CCeEEEEecCC
Q psy5806 1201 NKRIEYCDFFG 1211 (1332)
Q Consensus 1201 ~~~I~~~d~dG 1211 (1332)
.+.|.-.|...
T Consensus 379 DntIRlwdi~~ 389 (499)
T KOG0281|consen 379 DNTIRLWDIEC 389 (499)
T ss_pred CceEEEEeccc
Confidence 99999888863
No 201
>KOG0279|consensus
Probab=69.97 E-value=1.9e+02 Score=32.45 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=97.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee--Ee--ecC-CCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP--IP--LMN-DTIRDNFVIDWVANNIYYIDSQMHTINVARSDG- 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~--i~--~~~-~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG- 1120 (1332)
+.+++..+.+..+|.+.....+|...+|.. .+... +. ..| .....++++.. .++..++-+..+.++.+|+.+
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~-dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g 95 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTS-DDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG 95 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEecc-CccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC
Confidence 345555555445555555555555555442 11111 00 011 22456777775 455556777778899999985
Q ss_pred ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcceEEEecCCCEEEEEEc
Q psy5806 1121 QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1121 ~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~~~~LY~~d~ 1199 (1332)
+....+..-.....++|++|.+..| ++-.-. ..|.--+.-|.-...+.... -.+.+-+.+.|.....|++.+
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrD------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~ 168 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRD------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSA 168 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCcee-ecCCCc------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEc
Confidence 4444454444567899999955444 554332 34555555565554444433 467778888887756666655
Q ss_pred C-CCeEEEEecCCCc-eEEEEe-ecccceEEE
Q psy5806 1200 T-NKRIEYCDFFGRS-RKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1200 ~-~~~I~~~d~dG~~-~~~~~~-~~~P~glav 1228 (1332)
+ .+.+..-|+++.. +..++. ...-..+++
T Consensus 169 s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 169 SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred cCCceEEEEccCCcchhhccccccccEEEEEE
Confidence 5 4556666888764 333333 333445555
No 202
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.81 E-value=87 Score=39.93 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=61.0
Q ss_pred CceeeEEEecCCeEEEEcCCCceEEE---EeeC-CceEEE-----EecCCCC-ceEEEEcCCCcEEEEEecCCCCCCCCC
Q psy5806 1090 IRDNFVIDWVANNIYYIDSQMHTINV---ARSD-GQHKKI-----LVNDLME-PLAIAVYPRRGLLFYSHWGLYDNSPTT 1159 (1332)
Q Consensus 1090 ~p~glAvDw~~~~LY~td~~~~~I~v---~~ld-G~~~~~-----~~~~~~~-P~~iavdp~~g~Lywtd~~~~~~~~~~ 1159 (1332)
.+..|++.+.+.+|.+.-. ++|.+ .+.+ |. +.+ +..++.. +.+++=-+ .+.|++...+. ..
T Consensus 449 ~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~-----~~ 519 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDP-----EH 519 (591)
T ss_pred CcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCc-eeecccEEeecccCCccccceEec-CCEEEEEecCC-----CC
Confidence 5777888777888777653 35655 4433 43 222 3334443 46666555 45566554333 46
Q ss_pred cEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1160 KIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1160 ~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.++++.+||...+.+...++..| ..+|......||++|++.
T Consensus 520 ~v~~v~vDG~~~~~~~~~n~~~~-v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 520 PVWYVNLDGSNSDALPSRNLSAP-VVAVAASPSTVYVTDARA 560 (591)
T ss_pred ceEEEecCCccccccCCCCccCc-eEEEecCCceEEEEcCCc
Confidence 69999999998765433333333 355655567899987653
No 203
>KOG0281|consensus
Probab=69.72 E-value=47 Score=37.86 Aligned_cols=188 Identities=13% Similarity=0.119 Sum_probs=112.5
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
.+.+.-+.|| +...++-...++|..-+.++ -....+..-.-++.--|.+| .+ |-++.+...+|.+++.+ |+.
T Consensus 197 skgVYClQYD---D~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~r-viisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 197 SKGVYCLQYD---DEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ER-VIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred CCceEEEEec---chhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ce-EEEecCCCceEEEEeccCCch
Confidence 4456777777 33556666777777776431 11122222223455556666 44 77888888899999997 666
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc----eEEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY----RTVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~----~~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
..++..--...-++.+. +|+|. |-... ..|..-+|+... +.+|+. .....| .+|++.+ +.++-
T Consensus 270 l~tlihHceaVLhlrf~--ng~mv-tcSkD------rsiaVWdm~sps~it~rrVLvG-HrAaVN--vVdfd~k-yIVsA 336 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS--NGYMV-TCSKD------RSIAVWDMASPTDITLRRVLVG-HRAAVN--VVDFDDK-YIVSA 336 (499)
T ss_pred hhHHhhhcceeEEEEEe--CCEEE-EecCC------ceeEEEeccCchHHHHHHHHhh-hhhhee--eeccccc-eEEEe
Confidence 66644433455666665 56664 43333 345555665544 223332 122333 4565555 44455
Q ss_pred cCCCeEEEEecCCCc-eEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1199 STNKRIEYCDFFGRS-RKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~-~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
++...|..-+.+... .+++ ..|-.|||- -.|.++|.++-...++|...+...|
T Consensus 337 SgDRTikvW~~st~efvRtl--~gHkRGIAC-----lQYr~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTL--NGHKRGIAC-----LQYRDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred cCCceEEEEeccceeeehhh--hccccccee-----hhccCeEEEecCCCceEEEEecccc
Confidence 555567766665332 1121 466677766 2489999999999999999998877
No 204
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=68.71 E-value=1.9e+02 Score=31.95 Aligned_cols=112 Identities=11% Similarity=0.097 Sum_probs=65.3
Q ss_pred eecCCCCceeeEE--EecCCeEEE--EcCCCceEEEEeeC----CceEEEEecCC---CCceEEEEcCCCcEEEEEecCC
Q psy5806 1084 PLMNDTIRDNFVI--DWVANNIYY--IDSQMHTINVARSD----GQHKKILVNDL---MEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1084 ~~~~~~~p~glAv--Dw~~~~LY~--td~~~~~I~v~~ld----G~~~~~~~~~~---~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
.+++...|.||++ +.+++..|+ ++. .+.|+...+- |..+..+...+ ....|+++|-+.|.||.++...
T Consensus 148 ~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEdv 226 (364)
T COG4247 148 YSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEEDV 226 (364)
T ss_pred cccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeeccc
Confidence 4467788999998 455555554 443 4667666552 33222222222 2457899999999999998654
Q ss_pred CCCCCCCcEEEEecC---CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEE
Q psy5806 1153 YDNSPTTKIEKVYLD---GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIE 1205 (1332)
Q Consensus 1153 ~~~~~~~~I~r~~ld---G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~ 1205 (1332)
.|++...+ |...++|-. +..-..|+=|.++=.||+..-+.+-+.
T Consensus 227 -------aiWK~~Aep~~G~~g~~idr--~~d~~~LtdDvEGltiYy~pnGkGYL~ 273 (364)
T COG4247 227 -------AIWKYEAEPNRGNTGRLIDR--IKDLSYLTDDVEGLTIYYGPNGKGYLL 273 (364)
T ss_pred -------eeeecccCCCCCCccchhhh--hcCchhhcccccccEEEEcCCCcEEEE
Confidence 57776653 333333321 111124666767777777665555444
No 205
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=68.31 E-value=4.4 Score=30.12 Aligned_cols=30 Identities=27% Similarity=0.820 Sum_probs=21.8
Q ss_pred CcccCCCCCC--ccccccCCCCccccCCCCeeE
Q psy5806 970 NACGSNNGGC--SHLCLRNPTNFTCACPTGILL 1000 (1332)
Q Consensus 970 n~C~~~nGgC--shlCl~~p~~~~C~Cp~g~~l 1000 (1332)
++|... ..| .+.|..+++++.|.|+.||..
T Consensus 3 ~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCC-CCcCCCCEeECCCCCeEeECCCCCcC
Confidence 455442 245 457999899999999999863
No 206
>KOG0263|consensus
Probab=67.65 E-value=1.8e+02 Score=37.03 Aligned_cols=184 Identities=16% Similarity=0.089 Sum_probs=101.0
Q ss_pred ceEEEEeecceEEEEeCCCCCCCCcccccCCccc-eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc
Q psy5806 1013 EFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMS-SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR 1091 (1332)
Q Consensus 1013 ~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~-~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p 1091 (1332)
.|||-.+.+..+|.=+|++.... +. ..+... +..+.|.|.+ .||+.......-|+=..+-.....++...+...
T Consensus 464 rfLlScSED~svRLWsl~t~s~~-V~--y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~~~PlRifaghlsDV 538 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCL-VI--YKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDHNKPLRIFAGHLSDV 538 (707)
T ss_pred cceeeccCCcceeeeecccceeE-EE--ecCCCcceeeEEecCCc--eEEEecCCCceeeeeecccCCchhhhccccccc
Confidence 45555554333676677654322 11 122222 3467788763 677654333222221111233333443445556
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
.-++|-+....+ .|.+...+++.++.- |..++++.+-.....+|+++|+..+|--.+. .+.|..-++.+..
T Consensus 539 ~cv~FHPNs~Y~-aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~e-------d~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 539 DCVSFHPNSNYV-ATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDE-------DGLIKIWDLANGS 610 (707)
T ss_pred ceEEECCccccc-ccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeeccc-------CCcEEEEEcCCCc
Confidence 668888644433 556667789999986 6666666444455688999997655533322 2456666776644
Q ss_pred eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC
Q psy5806 1171 RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210 (1332)
Q Consensus 1171 ~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d 1210 (1332)
....+...-.....|++..+ +.+..+....+.|..-|+.
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~d-g~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRD-GNVLASGGADNSVRLWDLT 649 (707)
T ss_pred chhhhhcccCceeEEEEecC-CCEEEecCCCCeEEEEEch
Confidence 33322222345566777754 4566666777777776664
No 207
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=67.34 E-value=2.8e+02 Score=34.54 Aligned_cols=49 Identities=10% Similarity=0.011 Sum_probs=28.5
Q ss_pred CCCEEEEEEcCCCeEEEEecC-CCceEEE-Ee---ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1190 KQRRLFWADSTNKRIEYCDFF-GRSRKIV-IS---KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1190 ~~~~LY~~d~~~~~I~~~d~d-G~~~~~~-~~---~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
.++.||+.+ ..++|..+|.+ |+.+-.. +. ...|... + .++++|+.....
T Consensus 405 ~g~~v~~g~-~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~-~-------~~g~~yv~~~~g 458 (488)
T cd00216 405 AGNLVFAGA-ADGYFRAFDATTGKELWKFRTPSGIQATPMTY-E-------VNGKQYVGVMVG 458 (488)
T ss_pred cCCeEEEEC-CCCeEEEEECCCCceeeEEECCCCceEcCEEE-E-------eCCEEEEEEEec
Confidence 467888876 56788888875 4432111 11 3344222 3 467888887643
No 208
>KOG0272|consensus
Probab=65.39 E-value=1.8e+02 Score=34.40 Aligned_cols=173 Identities=11% Similarity=0.052 Sum_probs=100.3
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCC-CCceeeEEEecCCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMND-TIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~-~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
..+..++|+|.++.|--+. ...+=+..++. +..+.+...|- ....+||+.. .+.|-.|..-...=+++|+- |..
T Consensus 262 ~RVs~VafHPsG~~L~Tas-fD~tWRlWD~~--tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~ 337 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTAS-FDSTWRLWDLE--TKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRC 337 (459)
T ss_pred hhheeeeecCCCceeeecc-cccchhhcccc--cchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcE
Confidence 3467899999988775544 33333334544 23344433332 2567899985 45564554433334568886 555
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
.-.+..-.....+|+.+| +|+..-|-.+. .+-+|+...+--. .-++..-..-...+-.++..+....+-+..+
T Consensus 338 im~L~gH~k~I~~V~fsP-NGy~lATgs~D----nt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSP-NGYHLATGSSD----NTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred EEEecccccceeeEeECC-CceEEeecCCC----CcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCc
Confidence 555665566789999999 89998886654 3567777666443 2222222233446677776666666655555
Q ss_pred eEEEEecCC-CceEEEEe-ecccceEEE
Q psy5806 1203 RIEYCDFFG-RSRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1203 ~I~~~d~dG-~~~~~~~~-~~~P~glav 1228 (1332)
.+..-.-.+ +..+.++. -...+++.+
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEe
Confidence 554433332 23334443 555666666
No 209
>KOG3914|consensus
Probab=65.08 E-value=81 Score=36.94 Aligned_cols=153 Identities=10% Similarity=-0.018 Sum_probs=97.2
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE----EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI----LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~----~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l 1166 (1332)
+...+....++.||+++... +..++.++++.... ......+|.+|......-..-+++..++ -..+.....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD----~~~~di~s~ 139 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGD----VYSFDILSA 139 (390)
T ss_pred ccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCC----ceeeeeecc
Confidence 44444444567777777654 44456666554311 1123357888888777777888875541 122222232
Q ss_pred C-CCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEee---cccceEEEecCCccccccEEEE
Q psy5806 1167 D-GSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK---VAPYGLSVRQSPGKAFIVELYW 1242 (1332)
Q Consensus 1167 d-G~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~---~~P~glav~~~~~~~~~~~lYw 1242 (1332)
+ |..+..+- .+.....+++.++.+.|..+|.. .+|+...+.+..-.--.-+ ...-.|++ ..+++.|
T Consensus 140 ~~~~~~~~lG--hvSml~dVavS~D~~~IitaDRD-EkIRvs~ypa~f~IesfclGH~eFVS~isl-------~~~~~Ll 209 (390)
T KOG3914|consen 140 DSGRCEPILG--HVSMLLDVAVSPDDQFIITADRD-EKIRVSRYPATFVIESFCLGHKEFVSTISL-------TDNYLLL 209 (390)
T ss_pred cccCcchhhh--hhhhhheeeecCCCCEEEEecCC-ceEEEEecCcccchhhhccccHhheeeeee-------ccCceee
Confidence 3 54443332 24556678999999999999854 5798888877542111102 22457899 8999999
Q ss_pred EECCCCEEEEEEecCC
Q psy5806 1243 TDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1243 td~~~~~V~~~~~~~g 1258 (1332)
+-.+.++|+..+..+|
T Consensus 210 S~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSG 225 (390)
T ss_pred ecCCCCcEEEEecccC
Confidence 9999999999999998
No 210
>KOG1219|consensus
Probab=64.45 E-value=3.3e+02 Score=39.51 Aligned_cols=35 Identities=31% Similarity=0.831 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCceeeCCCCCCCCcccccc
Q psy5806 1286 LTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPNEECFEG 1328 (1332)
Q Consensus 1286 ~~~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~~~c~~~ 1328 (1332)
+..|||-. || -|++. .+++.|.||.+|.+. .|...
T Consensus 3906 C~snPC~~--Gg---tCip~--~n~f~CnC~~gyTG~-~Ce~~ 3940 (4289)
T KOG1219|consen 3906 CASNPCLT--GG---TCIPF--YNGFLCNCPNGYTGK-RCEAR 3940 (4289)
T ss_pred ccCCCCCC--CC---EEEec--CCCeeEeCCCCccCc-eeecc
Confidence 45566663 22 68887 578999999999664 66544
No 211
>KOG1274|consensus
Probab=63.74 E-value=4.5e+02 Score=34.41 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee------cCCCCc-eeeEE
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL------MNDTIR-DNFVI 1096 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~------~~~~~p-~glAv 1096 (1332)
|.-+.+++.....++.+..+ .+.+|+|+|+++-|-+++ -+|.++.+++.++.-..++.. .....+ .-+|.
T Consensus 120 vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW 196 (933)
T KOG1274|consen 120 VKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW 196 (933)
T ss_pred EEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCccccccccceeeeeee
Confidence 66677766655544444322 357999999988777766 677888888876543332221 011122 33666
Q ss_pred EecCCeEEEEcCCCceEEEEeeCCce-EEEEecCCC--CceEEEEcCC
Q psy5806 1097 DWVANNIYYIDSQMHTINVARSDGQH-KKILVNDLM--EPLAIAVYPR 1141 (1332)
Q Consensus 1097 Dw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~~~--~P~~iavdp~ 1141 (1332)
.+.++.+-+.-. .+.|.+++.+|-. ...+...+. .-..++.+|.
T Consensus 197 ~Pk~g~la~~~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 197 HPKGGTLAVPPV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred cCCCCeEEeecc-CCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 777777655433 4577788877543 333332211 1456777885
No 212
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=63.35 E-value=2.6 Score=30.82 Aligned_cols=18 Identities=39% Similarity=1.100 Sum_probs=15.1
Q ss_pred ccccCC-CCccccCCCCee
Q psy5806 982 LCLRNP-TNFTCACPTGIL 999 (1332)
Q Consensus 982 lCl~~p-~~~~C~Cp~g~~ 999 (1332)
.|+..+ .+|.|.|+.||.
T Consensus 11 ~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 11 TCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp EEEEESTSEEEEEEBTTEE
T ss_pred EEEeCCCCCEEeECCCCCc
Confidence 577777 679999999986
No 213
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=62.57 E-value=2.6e+02 Score=31.36 Aligned_cols=190 Identities=14% Similarity=0.018 Sum_probs=104.0
Q ss_pred ceEEEEEeCCCcEEEEEe--CCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEe--eCCc
Q psy5806 1046 SSIFFDYHYSKNLIYFAD--MRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVAR--SDGQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd--~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~--ldG~ 1121 (1332)
.+...+..+.++.+.++. .....++..... .....+. . ......-.+|.. +.++..+.......+.. .+|+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~-g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-T-GGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-c-CCccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 456677787787777766 455667777633 2333332 1 124445577865 66766655555554443 3454
Q ss_pred eEEE-E-ecCCC-CceEEEEcCCCcEEEEEe-cCCCCCCCCCcEEEEec--CCCc-eEEEE------ecCCCCcceEEEe
Q psy5806 1122 HKKI-L-VNDLM-EPLAIAVYPRRGLLFYSH-WGLYDNSPTTKIEKVYL--DGSY-RTVLV------EEDLAFPNELAID 1188 (1332)
Q Consensus 1122 ~~~~-~-~~~~~-~P~~iavdp~~g~Lywtd-~~~~~~~~~~~I~r~~l--dG~~-~~~l~------~~~l~~p~glaiD 1188 (1332)
...+ + +..+. ...++.|+|..-++-+.- .+. ..+|+...+ ++.. ...+. ......+..++.-
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-----~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-----GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCC-----CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 4333 2 22333 678999999766654443 332 355655544 3333 22221 1123345567776
Q ss_pred cCCCEEEEEEcCCCeEEE-EecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEE
Q psy5806 1189 FKQRRLFWADSTNKRIEY-CDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252 (1332)
Q Consensus 1189 ~~~~~LY~~d~~~~~I~~-~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~ 1252 (1332)
.+...+.........+.. +..||...+.+.. ...+-.+++ ......+|.++. +.|++
T Consensus 175 ~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~-----~~~~~~~~~t~~--~~~~~ 233 (253)
T PF10647_consen 175 DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAV-----AASPSTVYVTDD--GGVLQ 233 (253)
T ss_pred CCCEEEEEeCCCCCceeEEEEccCCcccccCCCCCCcceEEe-----eCCCcEEEEECC--CcEEE
Confidence 566555555555555666 7788887666633 333334444 125556788763 56665
No 214
>KOG0641|consensus
Probab=61.49 E-value=2.4e+02 Score=30.45 Aligned_cols=111 Identities=19% Similarity=0.091 Sum_probs=65.5
Q ss_pred eEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEec-----CC--CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1094 FVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVN-----DL--MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1094 lAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~-----~~--~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
||+-.-++.+|.+.+...+|+.+++. .....++.. ++ ....++|||| .|+|..+.-.. +.-+-.+
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~d------ssc~lyd 259 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHAD------SSCMLYD 259 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCC------CceEEEE
Confidence 44433377888888888899988886 333333322 22 3467899999 68887775443 4455556
Q ss_pred cCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1166 LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
+.|.....-+-........+-+.+..-.|. +-+...+|...|+.|.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGD 305 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccc
Confidence 666554333322222333445554433333 3345678888888875
No 215
>KOG0303|consensus
Probab=61.38 E-value=1.5e+02 Score=34.88 Aligned_cols=157 Identities=11% Similarity=0.126 Sum_probs=88.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~ 1125 (1332)
+--++|++.-.-+..+....+.|..-++. ++...+....-.....+.+++.+.. ..|-....+|++++.- |+....
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~--tgeali~l~hpd~i~S~sfn~dGs~-l~TtckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVG--TGEALITLDHPDMVYSMSFNRDGSL-LCTTCKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEecc--CCceeeecCCCCeEEEEEeccCCce-eeeecccceeEEEcCCCCcEeee
Confidence 33456666655566666566777776654 4444443333334567888875544 4666667789999886 443322
Q ss_pred --EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce-EEEEecCCCCcceEE---EecCCCEEEEEEc
Q psy5806 1126 --LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR-TVLVEEDLAFPNELA---IDFKQRRLFWADS 1199 (1332)
Q Consensus 1126 --~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~-~~l~~~~l~~p~gla---iD~~~~~LY~~d~ 1199 (1332)
-..|...+++|=+- +|.++-|-.... +...|.- .|-.+. +.+....+..-+|+- .|++++.||.+-.
T Consensus 211 ~~~heG~k~~Raifl~--~g~i~tTGfsr~---seRq~aL--wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLA--SGKIFTTGFSRM---SERQIAL--WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred cccccCCCcceeEEec--cCceeeeccccc---cccceec--cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence 22355556666554 556666643320 0011111 111111 112222344455654 4889999999999
Q ss_pred CCCeEEEEecCCCc
Q psy5806 1200 TNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1200 ~~~~I~~~d~dG~~ 1213 (1332)
+.+.|.++.+....
T Consensus 284 GD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 284 GDSSIRYFEITNEP 297 (472)
T ss_pred CCcceEEEEecCCC
Confidence 99999999886554
No 216
>PHA02713 hypothetical protein; Provisional
Probab=61.01 E-value=3.8e+02 Score=34.02 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=79.3
Q ss_pred ecCCeEEEEcCC-----CceEEEEeeCCceEEEEecCCCCceE-EEEcCCCcEEEEEecCCCC-----------------
Q psy5806 1098 WVANNIYYIDSQ-----MHTINVARSDGQHKKILVNDLMEPLA-IAVYPRRGLLFYSHWGLYD----------------- 1154 (1332)
Q Consensus 1098 w~~~~LY~td~~-----~~~I~v~~ldG~~~~~~~~~~~~P~~-iavdp~~g~Lywtd~~~~~----------------- 1154 (1332)
-.+++||+.... ...+++.+.....=..+ ..+..|+. .++-..+|+||..--....
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 347899997543 23577777653321111 12222221 1111236899998421100
Q ss_pred CCCCCcEEEEecCCCceEEEEecCCCC---cceEEEecCCCEEEEEEcCC------CeEEEEecCC-CceEEEEe---ec
Q psy5806 1155 NSPTTKIEKVYLDGSYRTVLVEEDLAF---PNELAIDFKQRRLFWADSTN------KRIEYCDFFG-RSRKIVIS---KV 1221 (1332)
Q Consensus 1155 ~~~~~~I~r~~ldG~~~~~l~~~~l~~---p~glaiD~~~~~LY~~d~~~------~~I~~~d~dG-~~~~~~~~---~~ 1221 (1332)
......+++.+..-..-+.+.. +.. ..++++ -+++||+.-..+ ..++++|.+. ...+.+.+ ..
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~--m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPN--FWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred ccccceEEEECCCCCeEeecCC--CCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 0012457777775544333221 211 123333 358999984321 3578999886 45555444 23
Q ss_pred ccceEEEecCCccccccEEEEEECCCC--EEEEEEecCC
Q psy5806 1222 APYGLSVRQSPGKAFIVELYWTDWEAM--SVVIAREKSD 1258 (1332)
Q Consensus 1222 ~P~glav~~~~~~~~~~~lYwtd~~~~--~V~~~~~~~g 1258 (1332)
.-.|+++ .++.||++--..+ .|.++|..+.
T Consensus 504 ~~~~~~~-------~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 504 SALHTIL-------HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ccceeEE-------ECCEEEEEeeecceeehhhcCcccc
Confidence 3468888 9999999854333 5666666554
No 217
>KOG0270|consensus
Probab=59.56 E-value=3.8e+02 Score=32.13 Aligned_cols=60 Identities=13% Similarity=0.042 Sum_probs=46.4
Q ss_pred ceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEec
Q psy5806 1091 RDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHW 1150 (1332)
Q Consensus 1091 p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~ 1150 (1332)
...|+..+..++|-.+-+..++|..++++ |+...++.........++.+|.......+-.
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs 306 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGS 306 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecc
Confidence 45788888999999998888999999998 6665555434467788888888777666643
No 218
>KOG0278|consensus
Probab=59.26 E-value=2.8e+02 Score=30.64 Aligned_cols=187 Identities=12% Similarity=0.091 Sum_probs=95.9
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEE-ECCCCCCceeEeecCCCCceeeE-EEec-CCeEEEEcCCCceEEEEeeC-Cce
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTF-DMSDSTRIKPIPLMNDTIRDNFV-IDWV-ANNIYYIDSQMHTINVARSD-GQH 1122 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~-~l~~g~~~~~i~~~~~~~p~glA-vDw~-~~~LY~td~~~~~I~v~~ld-G~~ 1122 (1332)
+.+++|+...++|.- ....+|.|+ +++......+ .-.+.|.||- +-|- ..+-+.+......|+.+|.. |..
T Consensus 103 vk~~af~~ds~~llt--gg~ekllrvfdln~p~App~---E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLT--GGQEKLLRVFDLNRPKAPPK---EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE 177 (334)
T ss_pred eeeEEecccchhhhc--cchHHHhhhhhccCCCCCch---hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence 567888876665532 233344444 4432211111 1123455532 1111 12222233344556666654 444
Q ss_pred EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCc---ceEEEecCCCEEEEEEc
Q psy5806 1123 KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFP---NELAIDFKQRRLFWADS 1199 (1332)
Q Consensus 1123 ~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p---~glaiD~~~~~LY~~d~ 1199 (1332)
...+. -...+.++.|++.+..|-.++ +. .|. ..|......|=. ...| +.-.+.++. .+|++-.
T Consensus 178 v~sL~-~~s~VtSlEvs~dG~ilTia~-gs-------sV~--Fwdaksf~~lKs--~k~P~nV~SASL~P~k-~~fVaGg 243 (334)
T KOG0278|consen 178 VQSLE-FNSPVTSLEVSQDGRILTIAY-GS-------SVK--FWDAKSFGLLKS--YKMPCNVESASLHPKK-EFFVAGG 243 (334)
T ss_pred EEEEe-cCCCCcceeeccCCCEEEEec-Cc-------eeE--Eeccccccceee--ccCccccccccccCCC-ceEEecC
Confidence 44443 235688999998544444443 32 233 223333222211 1222 233556554 8999988
Q ss_pred CCCeEEEEecC-CCceEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1200 TNKRIEYCDFF-GRSRKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1200 ~~~~I~~~d~d-G~~~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
....+.++||+ |..+..... ......+.+ .-+|.+|-+-++.|+|.......+
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF------SPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF------SPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEE------CCCCceeeccCCCceEEEEEecCC
Confidence 88899999997 445544332 333344555 346778888888888876654443
No 219
>KOG0285|consensus
Probab=59.15 E-value=3.4e+02 Score=31.56 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=72.6
Q ss_pred EEeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceE
Q psy5806 776 LVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIE 855 (1332)
Q Consensus 776 vi~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~ 855 (1332)
++...+.-+..+|||+.+ .-|.+-+...+|.+.++.....+.-+..-....|++||.+..=|||-+- .. ..|.
T Consensus 146 Vi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g--ed----k~VK 218 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG--ED----KQVK 218 (460)
T ss_pred hhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec--CC----CeeE
Confidence 455567888999999764 3666677888999999965554444444456789999999888888764 33 4577
Q ss_pred EEecCCCCcEEEecc-cccCceeEEeCCCCCeEEEEeCCCCeEEEEcc
Q psy5806 856 MAHMDGTNRAVFETE-VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902 (1332)
Q Consensus 856 r~~~dG~~~~~l~~~-l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~~~ 902 (1332)
+.+|.-....--+-+ |.....|++-+.. ++.++-++...|..-|+
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDi 264 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDI 264 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeee
Confidence 766653321111122 5555566666544 34444333334443344
No 220
>KOG0308|consensus
Probab=57.35 E-value=1.7e+02 Score=36.55 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=74.0
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCce-EEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecC
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH-KKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLD 1167 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~-~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ld 1167 (1332)
.+...|-++..++.+ .+-+..+.|++++|.-+. ..++..--....++.++|.-.++|..+.. ..|+|.+|.
T Consensus 214 dNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd-------~~i~~Tdl~ 285 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD-------GNIYRTDLR 285 (735)
T ss_pred cceEEEEEcCCCCeE-eecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCC-------CcEEecccC
Confidence 366778888778888 455667899999996442 33322222348999999988888887654 479999997
Q ss_pred C-CceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecC
Q psy5806 1168 G-SYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210 (1332)
Q Consensus 1168 G-~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d 1210 (1332)
. ...+.|...+ ....-|.+....+-+ |+-+....|.+....
T Consensus 286 n~~~~tlick~d-aPv~~l~~~~~~~~~-WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 286 NPAKSTLICKED-APVLKLHLHEHDNSV-WVTTTDSSIKRWKLE 327 (735)
T ss_pred CchhheEeecCC-CchhhhhhccccCCc-eeeeccccceecCCc
Confidence 7 4455555433 333345655444445 777777778775443
No 221
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=57.08 E-value=4.6e+02 Score=34.62 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=57.3
Q ss_pred eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcC-CCeEEEEecCCC
Q psy5806 1134 LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST-NKRIEYCDFFGR 1212 (1332)
Q Consensus 1134 ~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~-~~~I~~~d~dG~ 1212 (1332)
..+++||+.|.+||---+. .+..+ |..++... ++..-.=+|+|.+++++-|.-.. .+.++ |+|..
T Consensus 378 ~~~s~D~~~glvy~ptGn~-----~pd~~-----g~~r~~~~--n~y~~slvALD~~TGk~~W~~Q~~~hD~W--D~D~~ 443 (764)
T TIGR03074 378 SVASYDEKLGLVYLPMGNQ-----TPDQW-----GGDRTPAD--EKYSSSLVALDATTGKERWVFQTVHHDLW--DMDVP 443 (764)
T ss_pred CceEEcCCCCeEEEeCCCc-----ccccc-----CCccccCc--ccccceEEEEeCCCCceEEEecccCCccc--ccccc
Confidence 4578999999999964322 12111 33332211 12223347999999999998765 44566 56655
Q ss_pred ceEEEEee------cccceEEEecCCccccccEEEEEECCCCEEEEE
Q psy5806 1213 SRKIVISK------VAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1213 ~~~~~~~~------~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~ 1253 (1332)
..-+++.. ..|.-+.. +-++++|+.|..+++...-
T Consensus 444 ~~p~L~d~~~~~G~~~~~v~~~------~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 444 AQPSLVDLPDADGTTVPALVAP------TKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CCceEEeeecCCCcEeeEEEEE------CCCCEEEEEECCCCCEEee
Confidence 44444431 12222222 3467888888877776544
No 222
>KOG0646|consensus
Probab=56.61 E-value=4.3e+02 Score=31.87 Aligned_cols=194 Identities=13% Similarity=0.047 Sum_probs=108.3
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC------
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG------ 1120 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG------ 1120 (1332)
+.+|+-++.+..| +...-.+.||--.+.+|.-..++ ...-....-|.+. ..+.++++.+..+.|.++.+--
T Consensus 84 v~al~s~n~G~~l-~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 84 VHALASSNLGYFL-LAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred eeeeecCCCceEE-EeecccCcEEEEEeccccHHHHH-HhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccccc
Confidence 3566666655433 34335677888777755433332 2333356677776 4666778888888888776621
Q ss_pred c-eEEE--EecCC-CCceEEEEcC--CCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEE
Q psy5806 1121 Q-HKKI--LVNDL-MEPLAIAVYP--RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1121 ~-~~~~--~~~~~-~~P~~iavdp--~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~L 1194 (1332)
. .... .+.+- .....+.+.+ .+++||-+.... .-+++-+. +...-.-+.. -..+..+++|+.+.++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~-----t~k~wdlS--~g~LLlti~f-p~si~av~lDpae~~~ 232 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR-----TIKLWDLS--LGVLLLTITF-PSSIKAVALDPAERVV 232 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCc-----eEEEEEec--cceeeEEEec-CCcceeEEEcccccEE
Confidence 1 0111 11111 1223344433 355666554332 23344333 3221111111 1457789999998888
Q ss_pred EEEEcCCCeEEEEecCCCc---e--------------EEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1195 FWADSTNKRIEYCDFFGRS---R--------------KIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1195 Y~~d~~~~~I~~~d~dG~~---~--------------~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
|+- +..+.|+..++.+.. + .+++. .+...-||+ ..++.|..+--..+.|...+
T Consensus 233 yiG-t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai------s~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 233 YIG-TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI------STDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred Eec-CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE------ecCccEEEeeCCCCCEEEEe
Confidence 876 567889888775432 1 12222 134456777 46777888888889999888
Q ss_pred ecCC
Q psy5806 1255 EKSD 1258 (1332)
Q Consensus 1255 ~~~g 1258 (1332)
.++.
T Consensus 306 i~S~ 309 (476)
T KOG0646|consen 306 IYSK 309 (476)
T ss_pred cchH
Confidence 7764
No 223
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=56.10 E-value=7.9 Score=22.23 Aligned_cols=9 Identities=78% Similarity=1.549 Sum_probs=7.1
Q ss_pred EEeCCCCce
Q psy5806 413 TCQCPLGLT 421 (1332)
Q Consensus 413 ~C~C~~G~~ 421 (1332)
+|.|+.||+
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 599999997
No 224
>KOG0268|consensus
Probab=55.56 E-value=1.5e+02 Score=34.41 Aligned_cols=188 Identities=9% Similarity=0.004 Sum_probs=109.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI- 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~- 1125 (1332)
+.||.++. +..++.. ...+|.+..++ |....++. +-....||.-.| ..++|.|.. ..|.+++..-..+..
T Consensus 112 V~Gi~v~~-~~~~tvg--dDKtvK~wk~~-~~p~~til--g~s~~~gIdh~~-~~~~FaTcG--e~i~IWD~~R~~Pv~s 182 (433)
T KOG0268|consen 112 VRGICVTQ-TSFFTVG--DDKTVKQWKID-GPPLHTIL--GKSVYLGIDHHR-KNSVFATCG--EQIDIWDEQRDNPVSS 182 (433)
T ss_pred eeeEEecc-cceEEec--CCcceeeeecc-CCcceeee--cccccccccccc-ccccccccC--ceeeecccccCCccce
Confidence 56888876 4455555 45667666665 54444443 333456666654 466776654 358888887554433
Q ss_pred EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCc-eEEEEecCCCCcceEEEecCCCEEEEEEcCCCeE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSY-RTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~-~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I 1204 (1332)
+.-+.+....+-..|..-.|.-+-... ..|.-.++--.. .+.++. . ..+|+|++.+ +...|.+-.....+
T Consensus 183 mswG~Dti~svkfNpvETsILas~~sD------rsIvLyD~R~~~Pl~KVi~-~-mRTN~IswnP-eafnF~~a~ED~nl 253 (433)
T KOG0268|consen 183 MSWGADSISSVKFNPVETSILASCASD------RSIVLYDLRQASPLKKVIL-T-MRTNTICWNP-EAFNFVAANEDHNL 253 (433)
T ss_pred eecCCCceeEEecCCCcchheeeeccC------CceEEEecccCCccceeee-e-ccccceecCc-cccceeeccccccc
Confidence 555767778888888665555444222 457766663333 222222 2 5789999999 77888887777788
Q ss_pred EEEecCCCceEEEEe---ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1205 EYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1205 ~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
+.+|+.--.+-+-+. .+....+++ ++.+. =+++-....+|..+....+
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdf-----sptG~-EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDF-----SPTGQ-EFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEecc-----CCCcc-hhccccccceEEEeecCCC
Confidence 887775333322222 222333333 22233 3566666677766665555
No 225
>KOG4441|consensus
Probab=52.62 E-value=2.2e+02 Score=36.17 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=96.5
Q ss_pred eeeEEEecCCeEEEEcCCC------ceEEEEeeCCceEEEEecCCCCceE-EEEcCCCcEEEEEecCCCCCCCCCcEEEE
Q psy5806 1092 DNFVIDWVANNIYYIDSQM------HTINVARSDGQHKKILVNDLMEPLA-IAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~------~~I~v~~ldG~~~~~~~~~~~~P~~-iavdp~~g~Lywtd~~~~~~~~~~~I~r~ 1164 (1332)
.|+|+= ++.||++-... +.+++.+.....=..+ ..+..+|. .++-...|.||..--.. +......|++.
T Consensus 326 ~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~-a~M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV-APMNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECY 401 (571)
T ss_pred ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceecc-CCccCccccceeEEECCEEEEEeccc-cccccccEEEe
Confidence 344444 78999985544 3466666654321112 23344443 66666789999985221 12345679999
Q ss_pred ecCCCceEEEEecCCCCcceEEEecCCCEEEEEEc------CCCeEEEEecCCCceEEEEe---ecccceEEEecCCccc
Q psy5806 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS------TNKRIEYCDFFGRSRKIVIS---KVAPYGLSVRQSPGKA 1235 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~------~~~~I~~~d~dG~~~~~~~~---~~~P~glav~~~~~~~ 1235 (1332)
+.....-.....-. ..-.+.++-.-+++||.+-. ..++++++|......+.+.+ ...-+|+++
T Consensus 402 Dp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~------- 473 (571)
T KOG4441|consen 402 DPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV------- 473 (571)
T ss_pred cCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-------
Confidence 88876654443221 12234444456899999854 24779999998877777766 333467888
Q ss_pred cccEEEEEECC-----CCEEEEEEecCC
Q psy5806 1236 FIVELYWTDWE-----AMSVVIAREKSD 1258 (1332)
Q Consensus 1236 ~~~~lYwtd~~-----~~~V~~~~~~~g 1258 (1332)
.++.||+.--. ..+|.+.|+.+.
T Consensus 474 ~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 474 LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 99999987632 345788887764
No 226
>KOG0308|consensus
Probab=51.83 E-value=5.4e+02 Score=32.43 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=99.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee-----EeecC-----CCCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP-----IPLMN-----DTIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~-----i~~~~-----~~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
+..|+|-+.++.++.+-.-.++|+..+++.|+...+ +.... ....+.||.+. ++.+.++....+-|+++
T Consensus 120 Vkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~w 198 (735)
T KOG0308|consen 120 VKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLW 198 (735)
T ss_pred heeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEe
Confidence 556777666677777766667777777775533111 11111 12456788874 55788887777788888
Q ss_pred eeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE--EEEecCCCCcceEEEecCCCE
Q psy5806 1117 RSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT--VLVEEDLAFPNELAIDFKQRR 1193 (1332)
Q Consensus 1117 ~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~--~l~~~~l~~p~glaiD~~~~~ 1193 (1332)
+.-...+.. +.+-.+..+.|.+++....+.-+. .. +.|.-=+|.-.... .++.++.. -.|..++.=..
T Consensus 199 Dprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SD------gtIrlWdLgqQrCl~T~~vH~e~V--WaL~~~~sf~~ 269 (735)
T KOG0308|consen 199 DPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SD------GTIRLWDLGQQRCLATYIVHKEGV--WALQSSPSFTH 269 (735)
T ss_pred ccccccceeeeeccccceEEEEEcCCCCeEeecC-CC------ceEEeeeccccceeeeEEeccCce--EEEeeCCCcce
Confidence 876444333 555557889999998555554443 22 44555555433322 23333332 35777777788
Q ss_pred EEEEEcCCCeEEEEecCCC-ceEEEEeeccc
Q psy5806 1194 LFWADSTNKRIEYCDFFGR-SRKIVISKVAP 1223 (1332)
Q Consensus 1194 LY~~d~~~~~I~~~d~dG~-~~~~~~~~~~P 1223 (1332)
+|..+ ..+.|.+.|+... ..+.|-...+|
T Consensus 270 vYsG~-rd~~i~~Tdl~n~~~~tlick~daP 299 (735)
T KOG0308|consen 270 VYSGG-RDGNIYRTDLRNPAKSTLICKEDAP 299 (735)
T ss_pred EEecC-CCCcEEecccCCchhheEeecCCCc
Confidence 88876 4567999999764 34344334444
No 227
>KOG4328|consensus
Probab=50.31 E-value=1.5e+02 Score=35.37 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=71.7
Q ss_pred eeEEeecCCCceEEEEecCCCceEEEecCCCCceEEEeC--CCCCccceeEecCCCeEEEEeCCCCeEEEEe--CCCCce
Q psy5806 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN--DLNRTESIAVDAIGRKIYWTDMNAQTIMVSD--IDGKNA 816 (1332)
Q Consensus 741 ~~~id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~vi~~--~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~--ldG~~~ 816 (1332)
+..+.|.+.+-.-+++-..+|.|...++.+...++|... .-....++.+-...+++|+.|.-. ...+.+ .+|+..
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~ 315 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEY 315 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccc
Confidence 456677765544444556678888888887777776654 334556777777778888776533 333443 466633
Q ss_pred EEEEecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEE-ecCCC
Q psy5806 817 KVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMA-HMDGT 862 (1332)
Q Consensus 817 ~~l~~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~-~~dG~ 862 (1332)
..+.... .+.++|+++|..-+++.|.-..+ ..+|+=+ .|.++
T Consensus 316 ~~~~lh~-kKI~sv~~NP~~p~~laT~s~D~---T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 316 ENLRLHK-KKITSVALNPVCPWFLATASLDQ---TAKIWDLRQLRGK 358 (498)
T ss_pred hhhhhhh-cccceeecCCCCchheeecccCc---ceeeeehhhhcCC
Confidence 3222223 37889999999988887753322 2556644 34443
No 228
>KOG4260|consensus
Probab=50.01 E-value=7.3 Score=42.50 Aligned_cols=37 Identities=22% Similarity=0.496 Sum_probs=30.1
Q ss_pred CccccccCC--CCcc--eeeeccCCCceEEeCCCCceecCC
Q psy5806 389 QPNYQSHCA--PKVC--SHICLPNKHRFTCQCPLGLTLSPD 425 (1332)
Q Consensus 389 qp~~~n~C~--~g~C--shlCl~~~~~~~C~C~~G~~L~~d 425 (1332)
-+.+.|+|+ ...| .|+|+|+.++|+|.+.+||.-.+|
T Consensus 232 gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d 272 (350)
T KOG4260|consen 232 GCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVD 272 (350)
T ss_pred ccccHHHHhcCCCCCChhheeecCCCceEecccccccCChH
Confidence 356789998 4567 589999999999999999986433
No 229
>KOG0263|consensus
Probab=49.87 E-value=6.8e+02 Score=32.17 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=110.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCcee-eEEEecCCeEEEEcCCCce-EEEEeeCCceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN-FVIDWVANNIYYIDSQMHT-INVARSDGQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~g-lAvDw~~~~LY~td~~~~~-I~v~~ldG~~~ 1123 (1332)
.+.+..|.|.++. ..+..+..+++.-.|+ +....+.-.+-..|.. +.|. -+-.||+....++ =.++..|-..+
T Consensus 453 PVyg~sFsPd~rf-LlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~--P~GyYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 453 PVYGCSFSPDRRF-LLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFA--PRGYYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred ceeeeeecccccc-eeeccCCcceeeeecc--cceeEEEecCCCcceeeEEec--CCceEEEecCCCceeeeeecccCCc
Confidence 3578889988764 4455577777776665 3444444445445654 4444 5567777655443 34455554433
Q ss_pred E-EEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 K-ILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~-~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
. ++..-+....-++++|...++ .|.... ..+..=+..-....-|+.........|++.+.+..|= +-...+
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~-aTGSsD------~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La-Sg~ed~ 599 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYV-ATGSSD------RTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA-SGDEDG 599 (707)
T ss_pred hhhhcccccccceEEECCccccc-ccCCCC------ceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe-ecccCC
Confidence 3 344556677789999964444 332211 2233223322233334443344555677776443332 333567
Q ss_pred eEEEEecCCCceEE-EEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecC
Q psy5806 1203 RIEYCDFFGRSRKI-VIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKS 1257 (1332)
Q Consensus 1203 ~I~~~d~dG~~~~~-~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~ 1257 (1332)
.|..-|+.+..+.. +.. -...++|++ -.+|.+.++....++|...|...
T Consensus 600 ~I~iWDl~~~~~v~~l~~Ht~ti~SlsF------S~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLKGHTGTIYSLSF------SRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cEEEEEcCCCcchhhhhcccCceeEEEE------ecCCCEEEecCCCCeEEEEEchh
Confidence 78888886544322 222 566678888 45777888888888888777643
No 230
>PRK10115 protease 2; Provisional
Probab=49.87 E-value=7.2e+02 Score=32.50 Aligned_cols=221 Identities=6% Similarity=-0.061 Sum_probs=106.5
Q ss_pred EEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCC-----CCeEEEEECCCCC-CceeEeecCCCCceee--E
Q psy5806 1024 IRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMR-----SGNLRTFDMSDST-RIKPIPLMNDTIRDNF--V 1095 (1332)
Q Consensus 1024 i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~-----~~~I~~~~l~~g~-~~~~i~~~~~~~p~gl--A 1095 (1332)
|+.+++++... +..++++.+ ..+++.+.++.||++-.. ...|++.++.++. ..+.+.. ....+..+ .
T Consensus 155 l~v~d~~tg~~--l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~-e~~~~~~~~~~ 229 (686)
T PRK10115 155 IRFRNLETGNW--YPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYE-EKDDTFYVSLH 229 (686)
T ss_pred EEEEECCCCCC--CCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEe-eCCCCEEEEEE
Confidence 55555543321 122344443 468898888889887432 2468888876442 2234443 22222222 2
Q ss_pred EEecCCeEEEEc--CCCceEEEEee---CCceEEEEecCCCCceEEEEcCCCcEEEEE-ecCCCCCCCCCcEEEEecCCC
Q psy5806 1096 IDWVANNIYYID--SQMHTINVARS---DGQHKKILVNDLMEPLAIAVYPRRGLLFYS-HWGLYDNSPTTKIEKVYLDGS 1169 (1332)
Q Consensus 1096 vDw~~~~LY~td--~~~~~I~v~~l---dG~~~~~~~~~~~~P~~iavdp~~g~Lywt-d~~~~~~~~~~~I~r~~ldG~ 1169 (1332)
....++.+.+.- ...+.+..++. ++..+..+......-..+. + ..+.+|+. +++. ...+|.++++++.
T Consensus 230 ~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ly~~tn~~~----~~~~l~~~~~~~~ 303 (686)
T PRK10115 230 KTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-H-YQHRFYLRSNRHG----KNFGLYRTRVRDE 303 (686)
T ss_pred EcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-e-CCCEEEEEEcCCC----CCceEEEecCCCc
Confidence 222344444432 22334555553 3443333333323333333 2 24555555 4433 4678999998742
Q ss_pred -ceEEEEecCC-CCcceEEEecCCCEEEEEEcC--CCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEE-
Q psy5806 1170 -YRTVLVEEDL-AFPNELAIDFKQRRLFWADST--NKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTD- 1244 (1332)
Q Consensus 1170 -~~~~l~~~~l-~~p~glaiD~~~~~LY~~d~~--~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd- 1244 (1332)
..+.++...- ....++++. ++.|+++... ..+|..++.++.....+. ...|..++..+...+..++.++++-
T Consensus 304 ~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~s 380 (686)
T PRK10115 304 QQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYGYS 380 (686)
T ss_pred ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEEEe
Confidence 3345555421 245566665 5677776554 445777777654332222 1223232221111111233344332
Q ss_pred --CCCCEEEEEEecCC
Q psy5806 1245 --WEAMSVVIAREKSD 1258 (1332)
Q Consensus 1245 --~~~~~V~~~~~~~g 1258 (1332)
..-..|++++..++
T Consensus 381 s~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 381 SMTTPDTLFELDMDTG 396 (686)
T ss_pred cCCCCCEEEEEECCCC
Confidence 25567777776655
No 231
>KOG0270|consensus
Probab=49.78 E-value=5.3e+02 Score=30.94 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=86.2
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC---------
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD--------- 1119 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld--------- 1119 (1332)
+|.+....+.|..+-....+|..-+++.|.....+. ...+....|+....+..+-.+.+..+++.+.+..
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 445555555566666666777777887665554443 3445667777777777766766656666555543
Q ss_pred ---CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEE
Q psy5806 1120 ---GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1120 ---G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~ 1196 (1332)
|..-++.+. ...|....+....|.|||-|... ....++.... .-....||.+......|..
T Consensus 327 k~~g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~----~~~~vwt~~A-----------Hd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 327 KFDGEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRN----PGKPVWTLKA-----------HDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred EeccceEEEEec-CCCceeEEEecCCceEEeeecCC----CCCceeEEEe-----------ccCCcceEEecCCCCccee
Confidence 333333333 34566666666677777777543 1111222211 1123456777666666666
Q ss_pred EEcCCCeEEEEecCCCceEEE
Q psy5806 1197 ADSTNKRIEYCDFFGRSRKIV 1217 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~dG~~~~~~ 1217 (1332)
+....+.+..-++++.+.+.+
T Consensus 391 t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred eccccceEEEEeecCCCCccc
Confidence 666666666667776654433
No 232
>KOG0299|consensus
Probab=49.09 E-value=5.5e+02 Score=30.94 Aligned_cols=195 Identities=10% Similarity=0.060 Sum_probs=104.9
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-----------------CCCceeeEEEecCCeEEEEc
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-----------------DTIRDNFVIDWVANNIYYID 1107 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-----------------~~~p~glAvDw~~~~LY~td 1107 (1332)
..+.++++.+.+.++|=++ .++.|..-+...|-..+.+.... ......+||...++.| .+.
T Consensus 143 ~s~~~vals~d~~~~fsas-k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl-atg 220 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSAS-KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL-ATG 220 (479)
T ss_pred CcceEEEeeccccceeecC-CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE-Eec
Confidence 3467888888888888665 55677766654343332222220 1123457787555544 344
Q ss_pred CCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceE-
Q psy5806 1108 SQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNEL- 1185 (1332)
Q Consensus 1108 ~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~gl- 1185 (1332)
.....|.+++.+ +++++++..--+...++++--....||-+-... .|-..+++-. .++.+-.+++.++
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr-------svkvw~~~~~---s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR-------SVKVWSIDQL---SYVETLYGHQDGVL 290 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC-------ceEEEehhHh---HHHHHHhCCcccee
Confidence 445577788887 666666444335567788776666777765332 2333333221 2233334556554
Q ss_pred EEecC-CCEEEEEEcCCCeEEEEecCCCceEEEEe-ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1186 AIDFK-QRRLFWADSTNKRIEYCDFFGRSRKIVIS-KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1186 aiD~~-~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
.||.- .+|+-=+-....++....+.-..+.+... ...|..+++ -++.=|++-..+|.|.-......
T Consensus 291 ~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~-------In~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 291 GIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAF-------INDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred eechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEE-------ecccceeeccCCceEEEeeeccc
Confidence 35542 23332221122223333332233333333 567888888 66666788888888876665444
No 233
>KOG0268|consensus
Probab=48.93 E-value=2.6e+02 Score=32.59 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=86.6
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEe
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVY 1165 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ 1165 (1332)
+..+...+.++++.-.|-.+......|...|+- ++..+-+.-+ .++.+|+-.| +++.|.+.... ..++..+
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnP-eafnF~~a~ED------~nlY~~D 257 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNP-EAFNFVAANED------HNLYTYD 257 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCc-cccceeecccc------ccceehh
Confidence 444556777777777777776667778888876 4433333333 5899999999 99999997654 6788887
Q ss_pred cCCCceEEEEecCCCCc-ceEEEec-CCCEEEEEEcCCCeEEEEecCC-CceEEEEe--ecccceEEE
Q psy5806 1166 LDGSYRTVLVEEDLAFP-NELAIDF-KQRRLFWADSTNKRIEYCDFFG-RSRKIVIS--KVAPYGLSV 1228 (1332)
Q Consensus 1166 ldG~~~~~l~~~~l~~p-~glaiD~-~~~~LY~~d~~~~~I~~~d~dG-~~~~~~~~--~~~P~glav 1228 (1332)
|---.+.+-+-.+ +. .-|.+|+ -.++=|++-+....|.-+..+. ..|.+... .++.+++..
T Consensus 258 mR~l~~p~~v~~d--hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 258 MRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY 323 (433)
T ss_pred hhhhcccchhhcc--cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence 7544433322211 11 1244555 3455667777788888888864 45666555 888888877
No 234
>KOG0310|consensus
Probab=48.71 E-value=5.7e+02 Score=31.01 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=92.6
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEee---cCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPL---MNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~---~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~ 1123 (1332)
+.+++|-.. ++|+-+-...|.+..+++.. ..++. .......-.-+-+..+.++.+......+..+++++...
T Consensus 71 v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 71 VYSVDFRSD-GRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred eeEEEeecC-CeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 567777654 56777766888888888541 22221 11122334555666888888887788888899998876
Q ss_pred EE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCC-ceEEEEecCCCCcceEEEecCCCEEEEEEcCC
Q psy5806 1124 KI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGS-YRTVLVEEDLAFPNELAIDFKQRRLFWADSTN 1201 (1332)
Q Consensus 1124 ~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~-~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~ 1201 (1332)
.. +..-.+..|..++.|.+++|++|-... ++|.--+.--. .+..-++ -+.|-.-.+-...+.+.. -++.
T Consensus 146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYD------g~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~ia-sAgG 216 (487)
T KOG0310|consen 146 QAELSGHTDYVRCGDISPANDHIVVTGSYD------GKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIA-SAGG 216 (487)
T ss_pred EEEecCCcceeEeeccccCCCeEEEecCCC------ceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEE-EcCC
Confidence 54 666668899999999999999996544 44544444332 2222222 233332222223333443 3566
Q ss_pred CeEEEEecCC
Q psy5806 1202 KRIEYCDFFG 1211 (1332)
Q Consensus 1202 ~~I~~~d~dG 1211 (1332)
+.|...|+-+
T Consensus 217 n~vkVWDl~~ 226 (487)
T KOG0310|consen 217 NSVKVWDLTT 226 (487)
T ss_pred CeEEEEEecC
Confidence 6788888873
No 235
>KOG2110|consensus
Probab=47.75 E-value=5.3e+02 Score=30.29 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=61.1
Q ss_pred eEEEEEeCCCcEEEE-EeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCce-EEEEeeC-CceE
Q psy5806 1047 SIFFDYHYSKNLIYF-ADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHT-INVARSD-GQHK 1123 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~-sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~-I~v~~ld-G~~~ 1123 (1332)
..++..+..+..|-+ .+...|.|..+++.+-....+|- ..-+....||++..+..| .|-++.++ |+|+... |+..
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~ll-ATASeKGTVIRVf~v~~G~kl 209 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLL-ATASEKGTVIRVFSVPEGQKL 209 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEE-EEeccCceEEEEEEcCCccEe
Confidence 345545544445544 34456888888876544444443 455678899999755555 55555554 6777764 6544
Q ss_pred EEEecC--CCCceEEEEcCCCcEEEEE
Q psy5806 1124 KILVND--LMEPLAIAVYPRRGLLFYS 1148 (1332)
Q Consensus 1124 ~~~~~~--~~~P~~iavdp~~g~Lywt 1148 (1332)
..+..| ..+.++|+++|...+|-.+
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 444333 2356889999986655444
No 236
>KOG4649|consensus
Probab=45.66 E-value=4.8e+02 Score=29.22 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCCCceEEEEecCCCeEEEEecCCCCceEEEcCCCCceEEEEeCCCCCceeeEEeccCCeEEEEeCCCC-eEEE
Q psy5806 551 NLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLK-TIEF 623 (1332)
Q Consensus 551 ~~~~P~~iavdp~~G~lywtd~g~~~~I~r~~~dG~~~~~l~~~~l~~p~glaiD~~~~rLYw~d~~~~-~I~~ 623 (1332)
+...-+-+||||..|.|||-.-- ..|||...| ++ .++ +.|--.++.||+.+.+++ .++.
T Consensus 29 gSHs~~~~avd~~sG~~~We~il-g~RiE~sa~-------vv-gdf-----VV~GCy~g~lYfl~~~tGs~~w~ 88 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAI-------VV-GDF-----VVLGCYSGGLYFLCVKTGSQIWN 88 (354)
T ss_pred ecCCceEEEecCCCCcEEeehhh-CceeeeeeE-------EE-CCE-----EEEEEccCcEEEEEecchhheee
Confidence 44556778999999999996522 356765432 12 121 455556778999988876 4443
No 237
>KOG0273|consensus
Probab=45.23 E-value=6.4e+02 Score=30.56 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=44.8
Q ss_pred CCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCceEEEEecCCCCCeEEEEeCCCCeEEEEe
Q psy5806 781 LNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843 (1332)
Q Consensus 781 ~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~~~~l~~~~~~~P~~Iavdp~~g~lywtd 843 (1332)
+....+|.|||.+..=|.+-.....|.|..++++....-+..--....+|..+|. |.|.-+-
T Consensus 316 ~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~ 377 (524)
T KOG0273|consen 316 FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASC 377 (524)
T ss_pred eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEe
Confidence 4556689999999999999999999999999876554333222244667777876 6655543
No 238
>KOG0284|consensus
Probab=43.14 E-value=1.6e+02 Score=34.67 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=69.7
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCC-ceEEE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDG-QHKKI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG-~~~~~ 1125 (1332)
+.++.+..++..+.-.| ..|.|.....+ ..++..+....-....++|+.+ +...|.+.+..++|.+.+.-- +...+
T Consensus 141 Vr~m~ws~~g~wmiSgD-~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGD-KGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERV 217 (464)
T ss_pred ceeEEEccCCCEEEEcC-CCceEEecccc-hhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhhe
Confidence 45777887776655444 66667665544 4455555444445789999998 888999999999999999863 33333
Q ss_pred EecCCCCceEEEEcCCCcEEEEEe
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLLFYSH 1149 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~Lywtd 1149 (1332)
|..---.|+.++=+|..|.|+...
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred eccCCCCcceeccCCccceeEEcc
Confidence 433335689999999988886653
No 239
>KOG1407|consensus
Probab=42.13 E-value=5.4e+02 Score=28.85 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=89.2
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEe-ecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceE
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIP-LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHK 1123 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~-~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~ 1123 (1332)
.+..+++...+.+|--.. ..++....+++.+....... .......+.|+-|+....++.+-+....|.+++.- |+..
T Consensus 22 ~v~Sv~wn~~g~~lasgs-~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~ 100 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGS-FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT 100 (313)
T ss_pred cceEEEEcccCceeeecc-cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE
Confidence 456777776665554322 33445555544221111111 11223677899999999999998888899988886 4444
Q ss_pred EEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecC-CCCcceEEEecCCCEEEEEEcCCC
Q psy5806 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEED-LAFPNELAIDFKQRRLFWADSTNK 1202 (1332)
Q Consensus 1124 ~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~-l~~p~glaiD~~~~~LY~~d~~~~ 1202 (1332)
..+... ..-.-|+-.|..+++-+.+... .|.-+ |-...++..... ....+-++.. ..+.||+...+.|
T Consensus 101 ~~i~~~-~eni~i~wsp~g~~~~~~~kdD-------~it~i--d~r~~~~~~~~~~~~e~ne~~w~-~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 101 ARIETK-GENINITWSPDGEYIAVGNKDD-------RITFI--DARTYKIVNEEQFKFEVNEISWN-NSNDLFFLTNGLG 169 (313)
T ss_pred EEeecc-CcceEEEEcCCCCEEEEecCcc-------cEEEE--Eecccceeehhcccceeeeeeec-CCCCEEEEecCCc
Confidence 333322 2335567777777666665433 34433 333333332221 1235567777 5567888888999
Q ss_pred eEEEEecC
Q psy5806 1203 RIEYCDFF 1210 (1332)
Q Consensus 1203 ~I~~~d~d 1210 (1332)
.|+...+-
T Consensus 170 ~v~ILsyp 177 (313)
T KOG1407|consen 170 CVEILSYP 177 (313)
T ss_pred eEEEEecc
Confidence 99888775
No 240
>KOG4378|consensus
Probab=40.58 E-value=7.6e+02 Score=30.12 Aligned_cols=132 Identities=9% Similarity=0.032 Sum_probs=82.5
Q ss_pred CceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEec-CCCCcceEEEecCCCEEEEEEcCCCeEEEEecC
Q psy5806 1132 EPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE-DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFF 1210 (1332)
Q Consensus 1132 ~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~-~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d 1210 (1332)
..|-|-++|...+|..+.... +.+---+..|.....-... .-.--.||.+.+.+..|+++-....+|.-+|..
T Consensus 166 svRll~ys~skr~lL~~asd~------G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDK------GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eEEEeecccccceeeEeeccC------CeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 346677788888877775443 4555556666443222211 112245899999999999999889999998875
Q ss_pred CCceEEEEeecccc-eEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEEecCCCCeeeE
Q psy5806 1211 GRSRKIVISKVAPY-GLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNI 1277 (1332)
Q Consensus 1211 G~~~~~~~~~~~P~-glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~~~~~~~~~~i 1277 (1332)
...-..-+.-.+|+ .+|+ -..|++..+-...|+|+.+|.-..- ..++++...-..+..|
T Consensus 240 s~~s~~~l~y~~Plstvaf------~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAF------SECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRV 299 (673)
T ss_pred cccccceeeecCCcceeee------cCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEE
Confidence 32211111156675 4566 3467777788889999999986541 3344444433444444
No 241
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=38.69 E-value=6.8e+02 Score=29.00 Aligned_cols=186 Identities=11% Similarity=0.039 Sum_probs=84.9
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCc---eeeEEEecCCeEEEEcCCCceEEEEeeC-Cc
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIR---DNFVIDWVANNIYYIDSQMHTINVARSD-GQ 1121 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p---~glAvDw~~~~LY~td~~~~~I~v~~ld-G~ 1121 (1332)
...+|+|. +.++-|.+- ..+.|++-. + |...-.........+ .=.+|+..+...|++.. .+.| ....| |.
T Consensus 18 ~l~dV~F~-d~~~G~~VG-~~g~il~T~-D-GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-~g~l-l~T~DgG~ 91 (302)
T PF14870_consen 18 PLLDVAFV-DPNHGWAVG-AYGTILKTT-D-GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-PGLL-LHTTDGGK 91 (302)
T ss_dssp -EEEEEES-SSS-EEEEE-TTTEEEEES-S-TTSS-EE-----S-----EEEEEEEETTEEEEEEE-TTEE-EEESSTTS
T ss_pred ceEEEEEe-cCCEEEEEe-cCCEEEEEC-C-CCccccccccCCCccceeeEEEEEecCCceEEEcC-CceE-EEecCCCC
Confidence 46788887 445666664 456777654 4 655544443333332 22233334677777643 3333 33444 44
Q ss_pred eE-EE-EecCC-CCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEE
Q psy5806 1122 HK-KI-LVNDL-MEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWAD 1198 (1332)
Q Consensus 1122 ~~-~~-~~~~~-~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d 1198 (1332)
.= ++ +...+ ..|.+|.....+..+..++. +.|+|..=.|..-+.++.......+.++...++. |++-
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vav 161 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDR--------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAV 161 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEE
Confidence 32 22 32222 35666555443322223433 4599888788777777765555555666554444 4444
Q ss_pred cCCCeEEEEecCCCc-eEEEEe--ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1199 STNKRIEYCDFFGRS-RKIVIS--KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1199 ~~~~~I~~~d~dG~~-~~~~~~--~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
...+.+.+.--.|.. -+..-. .....+|.+ ..++.||.+. ..+.|..-+
T Consensus 162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf------~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF------SPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-------TTS-EEEEE-TTTEEEEEE
T ss_pred ECcccEEEEecCCCccceEEccCccceehhcee------cCCCCEEEEe-CCcEEEEcc
Confidence 566777765445643 333222 555667777 2345666665 445555544
No 242
>KOG3658|consensus
Probab=38.44 E-value=55 Score=40.82 Aligned_cols=127 Identities=25% Similarity=0.463 Sum_probs=60.8
Q ss_pred cCCCCCceecCC--------CCceEe-CCcCcCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEecCCCEEEeeeecCC
Q psy5806 13 LQEIPQYKKCNR--------TGACIP-AQWQCDNEFDCEMGEDEMKCPQAS---PPKKCSPDEHRCTTGHCILKTWLCDG 80 (1332)
Q Consensus 13 ~~c~~~~f~C~~--------~~~Ci~-~~~~CDg~~DC~dgsDE~~C~~~~---~~~~C~~~~f~C~~g~Ci~~~~~CDg 80 (1332)
.+|+|.|=.|=. +-+|.+ .+--|-+..-|...+-| ||... ....|. ..+.|.+|+|++.--.==|
T Consensus 510 aqCSpsqgpCC~~~Cqf~~~~~kc~~~d~~~C~~~s~CnG~~ae--CP~s~~~~d~t~C~-~~~~C~~G~C~gs~c~~~g 586 (764)
T KOG3658|consen 510 AQCSPSQGPCCTPNCQFHTSGEKCREADEATCKGESTCNGFSAE--CPPSPPKPDGTVCN-ETGVCINGKCIGSCCLMQG 586 (764)
T ss_pred CccCCCCCCccCCcceeecccCeeeccccccCcCcccccCCccC--CcCCCCCCCCCccc-ccceEeCCcCccHHHHhhC
Confidence 367776666531 234552 22344455555444433 64221 234688 7789999999987433235
Q ss_pred CCCCC--CCCCcccccccCCCCCccccCCCCCCCCcccCCCccCCCCceecCCCceecCCccccCCCCCC
Q psy5806 81 IPDCS--LGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHC 148 (1332)
Q Consensus 81 ~~DC~--DgsDE~~C~~~C~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~~~~~Cdg~~dC 148 (1332)
..+|- ++.+..-|.--|..+ - ....|.++ +..+...+.-..+..++.-|.++...||-..-|
T Consensus 587 lesC~c~~~~~~~sC~lcCr~~--~---~~stC~~~-v~~~~~~~~~~~~L~pGsPC~~~~GyCdvf~KC 650 (764)
T KOG3658|consen 587 LESCFCTETDLDKSCKLCCRKP--D---DNSTCVPT-VEANRKNFDVGIYLRPGSPCNNYKGYCDVFGKC 650 (764)
T ss_pred cceeeeccCCchhhHHHHhcCC--C---CCCCcccc-cCccccccccceecCCCCcCcCCcceeccccce
Confidence 55553 222212332223211 0 01112222 111111111122445567798888888866555
No 243
>KOG3514|consensus
Probab=38.37 E-value=9.1e+02 Score=32.45 Aligned_cols=280 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred EEecCCCceEEEecCCCCceEEEeCC---CCCccceeEecCCCeEEEE-eCCCCeEEEEeC-----CCCceEEEEecCCC
Q psy5806 755 WSDISEKTIERVRFDMTGRERLVVND---LNRTESIAVDAIGRKIYWT-DMNAQTIMVSDI-----DGKNAKVLFWLNLY 825 (1332)
Q Consensus 755 wsD~~~~~I~r~~~~g~~~~~vi~~~---~~~p~glAvD~~~~nLYwt-D~~~~~I~v~~l-----dG~~~~~l~~~~~~ 825 (1332)
|.....++|.--.......--|+-.+ ...+.-+|+.-+.++||.- |-+.+.|.+... ||....+.+..+ .
T Consensus 455 Wnt~~~gSiSf~FRTtepnGlil~~~g~~~~~~d~~A~ELldghlyl~ldlGSG~iklras~rkv~DGeWhhv~l~R~-g 533 (1591)
T KOG3514|consen 455 WNTKKSGSISFDFRTTEPNGLILFHGGPQANATDYFAIELLDGHLYLLLDLGSGVIKLRASSRKVNDGEWHHVDLQRD-G 533 (1591)
T ss_pred cccCCcceeEEEEeecCCCceEEEccCcccccccEEEEEEeCCeEEEEEecCCceEEeeeecccccCCceEEEEeecc-C
Q ss_pred CCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecc---cccCcee-EEeCCCCCeEEEEeCCCCeEEEEc
Q psy5806 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE---VIWPSCL-AIDYSDNPKLYWVDTSKHTIEYKT 901 (1332)
Q Consensus 826 ~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~---l~~P~gl-~iD~~~~~~lYw~d~~~~~I~~~~ 901 (1332)
+--.|.||.. |+++... +.-+...+||. ..|.+. +.+|..+ ++-... +.+ ++|.-.-
T Consensus 534 R~gsvsVd~~-----~~df~tp----G~s~iL~ld~~--mylG~~~n~l~~P~~vWta~L~~-Gyv-------GCirdl~ 594 (1591)
T KOG3514|consen 534 RTGSVSVDAI-----KTDFSTP----GDSEILDLDDP--MYLGEVPNNLVYPSEVWTAALRK-GYV-------GCIRDLF 594 (1591)
T ss_pred ccceEEEeee-----ecCccCC----CcceeEeecCc--eeeccCCCCccCcHHHHHHHHhc-cch-------heehhhe
Q ss_pred cCCCceeEEec-cCCcceEEEEeCCEEEEEeCCCCEEEEEECCCCeEEEeeeecCcceEEeccccCCCCCcccCCCCCCc
Q psy5806 902 LATGRAKRAYA-VQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCS 980 (1332)
Q Consensus 902 ~dG~~~~~l~~-~~~~P~~la~~~~~iywtD~~~~~i~~~~~~~g~~i~~~~~~~i~~~~~~~~~~~~~n~C~~~nGgCs 980 (1332)
++|....+-.. ..+.-.|+...= .......-. .|||.+.
T Consensus 595 i~G~s~di~q~ae~q~sagvkpsC----------------------------------s~~~~~~C~-~nPC~N~----- 634 (1591)
T KOG3514|consen 595 IDGVSTDIRQEAEAQNSAGVKPSC----------------------------------SLSNEKICE-SNPCQNG----- 634 (1591)
T ss_pred ecceehhhHHHhhhccccccCccc----------------------------------chhhccccC-CCcccCC-----
Q ss_pred cccccCCCCccccC-CCCeeEccCCccccccCcceEEEEeecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEE
Q psy5806 981 HLCLRNPTNFTCAC-PTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLI 1059 (1332)
Q Consensus 981 hlCl~~p~~~~C~C-p~g~~l~~d~~tC~~~p~~~ll~~~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~l 1059 (1332)
..|...=+.+.|.| .+||. +++|+.. ..-++.+...++...+|..-......+.+-....+-
T Consensus 635 g~C~egwNrfiCDCs~T~~~----G~~CerE-------------~t~ls~nGs~~m~i~L~~~~~tq~E~v~iRF~t~r~ 697 (1591)
T KOG3514|consen 635 GKCSEGWNRFICDCSGTGFE----GRTCERE-------------ATALSYNGSMSMKIVLPHTMHTQAEDVSIRFRTQRA 697 (1591)
T ss_pred CCccccccccccccccCccc----Cccccce-------------eeeEEEcCeeeEEEEecccceeecceEEEEEEeccc
Q ss_pred EEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEE----EcCCCceEEEEee
Q psy5806 1060 YFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYY----IDSQMHTINVARS 1118 (1332)
Q Consensus 1060 Y~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~----td~~~~~I~v~~l 1118 (1332)
| |.++....+ ++....-+....+...-..=+.-.++||. .|.+.+.|++.+.
T Consensus 698 ~------Gll~~Tta~-~s~D~l~l~L~~g~vkl~v~ls~~~nlfag~~LnDN~WHtvrv~Rr 753 (1591)
T KOG3514|consen 698 Y------GLLFATTAR-GSADTLRLELDAGQVKLFVNLSGPENLFAGQSLNDNEWHTVRVVRR 753 (1591)
T ss_pred c------eeEEEeccC-CCCceEEEEEecceEEEEEecCCCcceeccccccCCcceEEEEEEc
No 244
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=38.16 E-value=8.6e+02 Score=30.18 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=69.5
Q ss_pred cCCeEEEEcC----CCceEEEEeeCCceEEEEecCCCCceE--EEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceE
Q psy5806 1099 VANNIYYIDS----QMHTINVARSDGQHKKILVNDLMEPLA--IAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRT 1172 (1332)
Q Consensus 1099 ~~~~LY~td~----~~~~I~v~~ldG~~~~~~~~~~~~P~~--iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~ 1172 (1332)
....||+... ....+..+|.+|..|-.+... .... +-.-+ +|.|++... .++..+++.|....
T Consensus 112 ~~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~--~~~~~~~~~l~-nG~ll~~~~--------~~~~e~D~~G~v~~ 180 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLD--SGSDNSFKQLP-NGNLLIGSG--------NRLYEIDLLGKVIW 180 (477)
T ss_dssp -TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GG--GT--SSEEE-T-TS-EEEEEB--------TEEEEE-TT--EEE
T ss_pred cCCcEEEEeCCCCCCCceEEEECCCccEEEEEccC--ccccceeeEcC-CCCEEEecC--------CceEEEcCCCCEEE
Confidence 3555666655 344566777778766543211 1122 44555 788877764 35888899887433
Q ss_pred EE-EecCC-CCcceEEEecCCCEEEEEEc------------CCCeEEEEecCCCceEEEEe-------------------
Q psy5806 1173 VL-VEEDL-AFPNELAIDFKQRRLFWADS------------TNKRIEYCDFFGRSRKIVIS------------------- 1219 (1332)
Q Consensus 1173 ~l-~~~~l-~~p~glaiD~~~~~LY~~d~------------~~~~I~~~d~dG~~~~~~~~------------------- 1219 (1332)
.. +.... ..=..+...+.++.|..+.. -.+.|..+|.+|......--
T Consensus 181 ~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~ 260 (477)
T PF05935_consen 181 EYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGD 260 (477)
T ss_dssp EEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSS
T ss_pred eeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccc
Confidence 32 11110 00123455555555555541 14556677755643222110
Q ss_pred ---------ecccceEEEecCCccccccEEEEEECCCCEEEEEEecCC
Q psy5806 1220 ---------KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1220 ---------~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g 1258 (1332)
=.|.-+|.+ ++.++.|+++-+....|.+++..++
T Consensus 261 ~~~~~~~~DW~H~Nsi~y-----d~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 261 ISGSGGGRDWLHINSIDY-----DPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp SS-SSTTSBS--EEEEEE-----ETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred cccCCCCCCccccCccEE-----eCCCCeEEEEcCcceEEEEEECCCC
Confidence 134556766 3446899999999999999998877
No 245
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=37.89 E-value=7.6e+02 Score=29.30 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCeEEEEECCCCCCceeEeecC-CC-CceeeEEEecCCeEEEEcCCCceEEEEee-CCceE
Q psy5806 1055 SKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-DT-IRDNFVIDWVANNIYYIDSQMHTINVARS-DGQHK 1123 (1332)
Q Consensus 1055 ~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~-~~-~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG~~~ 1123 (1332)
.++++|+. ...+.|+.++++++.........+ .. ...++.+. .++||+.+... .+..++. +|+..
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~--~G~i~~g~~~g-~~y~ld~~~G~~~ 134 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS--DGKIYVGSWDG-KLYALDASTGTLV 134 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe--CCeEEEecccc-eEEEEECCCCcEE
Confidence 34678887 356688888877544332111111 11 12234444 67798887655 6777777 67654
No 246
>smart00284 OLF Olfactomedin-like domains.
Probab=37.72 E-value=6.4e+02 Score=28.41 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=80.8
Q ss_pred CCeEEEEcCCCceEEEEEecCcce--EEEEeC-C----------CCCCccEEEeccCC-eEEEEeCCCCeEEEEeCCCCC
Q psy5806 478 NDSLYWADVENGEINRAHINGTFQ--YNVIRH-N----------TKKPAGVAIDWRTN-KLYWTESEYNWIEVSNLDGTY 543 (1332)
Q Consensus 478 ~~~lywsD~~~~~I~r~~~~g~~~--~~v~~~-~----------~~~p~glAvDw~~~-~lYw~d~~~~~I~v~~l~g~~ 543 (1332)
++.+|+.-..+..|.|.+|..... +.++.. + -..--.||||--+= -||-+....+.|.+++||-..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence 489999877788899999876543 233321 1 11234689995331 456666677889999998654
Q ss_pred cEEEE--eCCCCCce---EEEEecCCCeEEEEecCC--CCceEEE-cCCCC-ceEEEE--eCCCCCceeeEEeccCCeEE
Q psy5806 544 PTLLF--WQNLSEPR---DIAVNPIGGIMYWCSWGD--LHKIEMA-GMDGS-HRHILA--SDSLKNPTGLAIDLENSRLY 612 (1332)
Q Consensus 544 ~~~l~--~~~~~~P~---~iavdp~~G~lywtd~g~--~~~I~r~-~~dG~-~~~~l~--~~~l~~p~glaiD~~~~rLY 612 (1332)
-++.. .....++. +..| -|.||-++... ..+|.-+ +...+ ...+.+ ......-..|..++.+++||
T Consensus 163 L~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY 239 (255)
T smart00284 163 LTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLY 239 (255)
T ss_pred ceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEE
Confidence 44432 12333332 2223 38999998532 3456544 33322 111111 22223334577788899999
Q ss_pred EEeCCCCeEE
Q psy5806 613 WANVGLKTIE 622 (1332)
Q Consensus 613 w~d~~~~~I~ 622 (1332)
.=|-+.-.++
T Consensus 240 ~wdng~~l~Y 249 (255)
T smart00284 240 AWNNGHLVHY 249 (255)
T ss_pred EEeCCeEEEE
Confidence 8887644333
No 247
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=37.50 E-value=1.9e+02 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.769 Sum_probs=17.8
Q ss_pred CCCCCCCCCCCCccceeccCCCCceeeCCCCCCCC
Q psy5806 1288 WNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLEPN 1322 (1332)
Q Consensus 1288 ~n~C~~~ng~C~~lC~~~~~~~~~~C~C~~~~~~~ 1322 (1332)
-+.|..+ | +|-.. ..+.|.|..||++.
T Consensus 83 y~~CG~~-g----~C~~~---~~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 83 YGFCGPN-G----ICNSN---NSPKCSCLPGFEPK 109 (110)
T ss_pred ccccCCc-c----EeCCC---CCCceECCCCcCCC
Confidence 3556543 3 56433 45689999999875
No 248
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=36.70 E-value=1.9e+02 Score=35.85 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=61.8
Q ss_pred cCCCCceeeEEEecCCeEEEEcCCCc----------------eEEEEeeC-Cce------EEE-E-------ecC-----
Q psy5806 1086 MNDTIRDNFVIDWVANNIYYIDSQMH----------------TINVARSD-GQH------KKI-L-------VND----- 1129 (1332)
Q Consensus 1086 ~~~~~p~glAvDw~~~~LY~td~~~~----------------~I~v~~ld-G~~------~~~-~-------~~~----- 1129 (1332)
+....|++|++.+.++.+|++..++. .|..+... +.+ -.+ + ...
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 34568999999999999999865543 23333222 210 011 0 011
Q ss_pred -----CCCceEEEEcCCCcEEEEEecCCCCCCCCCc---EEEEe-cCCCceEE--EEecCC-CCcceEEEecCCCEEEEE
Q psy5806 1130 -----LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTK---IEKVY-LDGSYRTV--LVEEDL-AFPNELAIDFKQRRLFWA 1197 (1332)
Q Consensus 1130 -----~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~---I~r~~-ldG~~~~~--l~~~~l-~~p~glaiD~~~~~LY~~ 1197 (1332)
+..|-+|++|| .|+|+....+..+. ...+ +..+. -++...++ ++...+ ..-.|.++.++.+.||+.
T Consensus 494 ~~~~~f~~PDnl~fD~-~GrLWi~TDg~~s~-~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 494 INANWFNSPDNLAFDP-WGRLWIQTDGSGST-LRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cccccccCCCceEECC-CCCEEEEecCCCCc-cCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 55699999999 78888776554210 0111 11111 12221111 122111 234588888888888887
Q ss_pred EcCC
Q psy5806 1198 DSTN 1201 (1332)
Q Consensus 1198 d~~~ 1201 (1332)
-++-
T Consensus 572 vQHP 575 (616)
T COG3211 572 VQHP 575 (616)
T ss_pred ecCC
Confidence 6654
No 249
>PHA02713 hypothetical protein; Provisional
Probab=35.28 E-value=1e+03 Score=30.13 Aligned_cols=148 Identities=7% Similarity=0.041 Sum_probs=78.3
Q ss_pred cCCeEEEEcCC------CceEEEEeeCCceEEEEecCCCCce-EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1099 VANNIYYIDSQ------MHTINVARSDGQHKKILVNDLMEPL-AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1099 ~~~~LY~td~~------~~~I~v~~ldG~~~~~~~~~~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
.++.||+.-.. .+.++..++....-..+ ..+..|+ +.++-..+|+||..--.. .......+++.+.....-
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~-~~m~~~R~~~~~~~~~g~IYviGG~~-~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL-PPMIKNRCRFSLAVIDDTIYAIGGQN-GTNVERTIECYTMGDDKW 379 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC-CCCcchhhceeEEEECCEEEEECCcC-CCCCCceEEEEECCCCeE
Confidence 47889998542 13455666553321112 2223333 122222367999985321 111235688888765433
Q ss_pred EEEEecCCCCcc-eEEEecCCCEEEEEEcC-----------------------CCeEEEEecCCCceEEEEe---ecccc
Q psy5806 1172 TVLVEEDLAFPN-ELAIDFKQRRLFWADST-----------------------NKRIEYCDFFGRSRKIVIS---KVAPY 1224 (1332)
Q Consensus 1172 ~~l~~~~l~~p~-glaiD~~~~~LY~~d~~-----------------------~~~I~~~d~dG~~~~~~~~---~~~P~ 1224 (1332)
.. +. .+..|. +.++-.-+++||+.=.. .+.++++|......+.+.+ .....
T Consensus 380 ~~-~~-~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 380 KM-LP-DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred EE-CC-CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 22 22 222221 11111236899997432 3468888887666555554 23345
Q ss_pred eEEEecCCccccccEEEEEECCC------CEEEEEEecC
Q psy5806 1225 GLSVRQSPGKAFIVELYWTDWEA------MSVVIAREKS 1257 (1332)
Q Consensus 1225 glav~~~~~~~~~~~lYwtd~~~------~~V~~~~~~~ 1257 (1332)
++++ .++.||+.--.+ ..|.++|..+
T Consensus 458 ~~~~-------~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 458 GVVS-------HKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cEEE-------ECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 7888 899999985321 3466777665
No 250
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=34.36 E-value=3.1e+02 Score=31.66 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=70.6
Q ss_pred eeeEEEecCCeEEEEcCC---CceEEEEeeC-CceEEE-E----ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEE
Q psy5806 1092 DNFVIDWVANNIYYIDSQ---MHTINVARSD-GQHKKI-L----VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIE 1162 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~---~~~I~v~~ld-G~~~~~-~----~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~ 1162 (1332)
.|-.+| +.++-+.... .+.+.|.+|. |....+ + .++-..|+-++--. +|++|.+...+ ...+.-+|+
T Consensus 137 R~a~fD--Ge~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~-nGH~Y~asLSG-~~~SPLKiY 212 (442)
T PF15416_consen 137 RCASFD--GEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALV-NGHSYLASLSG-GKASPLKIY 212 (442)
T ss_pred cccCCC--CcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhc-CCeEEEEeccC-CCCCceEEE
Confidence 444455 6666665443 3344555554 433222 1 11224566666654 89999998544 122334677
Q ss_pred EEecCCCceEEEEecCCCCc----------ceEEEec-CCCEEEEEEcCCCeEEEEecCCCc
Q psy5806 1163 KVYLDGSYRTVLVEEDLAFP----------NELAIDF-KQRRLFWADSTNKRIEYCDFFGRS 1213 (1332)
Q Consensus 1163 r~~ldG~~~~~l~~~~l~~p----------~glaiD~-~~~~LY~~d~~~~~I~~~d~dG~~ 1213 (1332)
.-.--.+..++|...++... ..+.||. -++.+|+.|.....|.|++..+-.
T Consensus 213 ~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vsn~k 274 (442)
T PF15416_consen 213 YWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVSNYK 274 (442)
T ss_pred EecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEccCcc
Confidence 77777777777765444332 2367776 346799998888889998887643
No 251
>KOG0289|consensus
Probab=33.74 E-value=9.1e+02 Score=29.03 Aligned_cols=156 Identities=12% Similarity=0.075 Sum_probs=85.5
Q ss_pred CCCceeeEEEecCCeEEEEcCCCceEEEEee-CCceEEEEec--CCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEE
Q psy5806 1088 DTIRDNFVIDWVANNIYYIDSQMHTINVARS-DGQHKKILVN--DLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164 (1332)
Q Consensus 1088 ~~~p~glAvDw~~~~LY~td~~~~~I~v~~l-dG~~~~~~~~--~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~ 1164 (1332)
-+...++.+.+.+..|-|++... .+-..++ +|+...++.. .--.-..++++| .|.||-+-... +.|-.-
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~-~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d------~~vkiw 374 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDG-TWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPD------GVVKIW 374 (506)
T ss_pred cccceeeeeccCCcEEEEecCCc-eEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCC------ceEEEE
Confidence 34568899998888888886543 4444444 3665555332 212367899999 89999986443 444444
Q ss_pred ecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCC-CceEEEE-e-ecccceEEEecCCccccccEEE
Q psy5806 1165 YLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG-RSRKIVI-S-KVAPYGLSVRQSPGKAFIVELY 1241 (1332)
Q Consensus 1165 ~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG-~~~~~~~-~-~~~P~glav~~~~~~~~~~~lY 1241 (1332)
++.......-+...-.....|++. +++.-..+.+..+.|.--|+.- .+-+.+. . .....++.+ |+.+.+|-
T Consensus 375 dlks~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~f-----D~SGt~L~ 448 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFS-ENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSF-----DQSGTYLG 448 (506)
T ss_pred EcCCccccccCCCCCCceeEEEec-cCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEE-----cCCCCeEE
Confidence 554333222233222333455554 3332222333455577767742 2333332 2 334456666 44555555
Q ss_pred EEECCCCEEEEEEecCC
Q psy5806 1242 WTDWEAMSVVIAREKSD 1258 (1332)
Q Consensus 1242 wtd~~~~~V~~~~~~~g 1258 (1332)
.+ ...=.|+.+.|.+.
T Consensus 449 ~~-g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 449 IA-GSDLQVYICKKKTK 464 (506)
T ss_pred ee-cceeEEEEEecccc
Confidence 44 55667788887665
No 252
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=32.74 E-value=2.2e+02 Score=37.56 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCeEEEEcCCCceEEEEeeCCceEEEE-ecCCCCceEEEEcCCCcEEEE-EecCCCCCCCCCcEEEEecCCCc--eEEEE
Q psy5806 1100 ANNIYYIDSQMHTINVARSDGQHKKIL-VNDLMEPLAIAVYPRRGLLFY-SHWGLYDNSPTTKIEKVYLDGSY--RTVLV 1175 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~ldG~~~~~~-~~~~~~P~~iavdp~~g~Lyw-td~~~~~~~~~~~I~r~~ldG~~--~~~l~ 1175 (1332)
++-+|+.+.. ++|.++|.||...+++ .........=+++|...+|=+ +.... -.+.+.|++-+|+.+. ...|-
T Consensus 319 tkiAfv~~~~-~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~--~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 319 AKLAFRNDVT-GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEG--LPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred eeEEEEEcCC-CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecC--CCCCceEEEEehhccCCCceEee
Confidence 7888888843 4899999999776655 333233344567887777766 42111 0135779998885544 33332
Q ss_pred ecCCCCcceEEEe-cCCCEEEEEEcCCCe
Q psy5806 1176 EEDLAFPNELAID-FKQRRLFWADSTNKR 1203 (1332)
Q Consensus 1176 ~~~l~~p~glaiD-~~~~~LY~~d~~~~~ 1203 (1332)
-++..-|.-=.+. -+.--+|++|+++|+
T Consensus 396 ve~aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 396 VENAAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred cccccccceEecCCCCeEEEEEcCCCCCc
Confidence 2244455543443 245568999998776
No 253
>KOG0918|consensus
Probab=32.65 E-value=1.7e+02 Score=34.56 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=61.5
Q ss_pred eeeEEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1092 ~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
+.|-+.-..|.||++..-.+-|+..++.--.+..+...+ ..-|+ ++......-..+.+. .-.++...+.|+..
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi-~lGG~-i~~~s~vkvl~~e~~-----~~~~ea~~vKGrkl 387 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQI-FLGGS-IQKGSPVKVLEEEGL-----KKQPEALYVKGRKL 387 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEE-EECcE-eecCCceEEeccccc-----cCCCccceecCccc
Confidence 455555559999999988888888887532222221110 00010 111111111122111 12233333344331
Q ss_pred EEEEecCCCCcceEEEecCCCEEEEEEcC---------------CCeEEEEecCCC------ceEEEEe-ecccceEEE
Q psy5806 1172 TVLVEEDLAFPNELAIDFKQRRLFWADST---------------NKRIEYCDFFGR------SRKIVIS-KVAPYGLSV 1228 (1332)
Q Consensus 1172 ~~l~~~~l~~p~glaiD~~~~~LY~~d~~---------------~~~I~~~d~dG~------~~~~~~~-~~~P~glav 1228 (1332)
-+-|.-|-+..+++|||++.+- ...|..+|.|.. |+..++. +..|.|=++
T Consensus 388 -------~GGPQMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g~~~lN~~flvDf~~ep~gPsL 459 (476)
T KOG0918|consen 388 -------RGGPQMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKGGLSLNPDFLVDFGKEPDGPSL 459 (476)
T ss_pred -------cCCceeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCCceeeCccceEEccCCCCCcch
Confidence 1346667777789999999653 345666776522 3444444 555555544
No 254
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=32.61 E-value=9.3e+02 Score=29.88 Aligned_cols=117 Identities=13% Similarity=0.009 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCceEEEEeeCCceEEE--EecCC-CCceEEEEcCCCcEEEEEec------CCCCCCCCCcEEEEecCCCc
Q psy5806 1100 ANNIYYIDSQMHTINVARSDGQHKKI--LVNDL-MEPLAIAVYPRRGLLFYSHW------GLYDNSPTTKIEKVYLDGSY 1170 (1332)
Q Consensus 1100 ~~~LY~td~~~~~I~v~~ldG~~~~~--~~~~~-~~P~~iavdp~~g~Lywtd~------~~~~~~~~~~I~r~~ldG~~ 1170 (1332)
+++|++... +.+..+++.|+.... +..+. ..-..+...|....|..+.. ......-...|..++.+|..
T Consensus 158 nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~v 235 (477)
T PF05935_consen 158 NGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEV 235 (477)
T ss_dssp TS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-E
T ss_pred CCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCE
Confidence 566666554 677777777775433 22211 12356777774333333331 11001123456666666644
Q ss_pred eEEEEe--------------------------cCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEE
Q psy5806 1171 RTVLVE--------------------------EDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVI 1218 (1332)
Q Consensus 1171 ~~~l~~--------------------------~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~ 1218 (1332)
....=. .+..+.|+|..|..++.|.++-...+.|..+|.......-++
T Consensus 236 v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 236 VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 333210 112457889999989999999988889999997654444443
No 255
>KOG2048|consensus
Probab=32.28 E-value=1.2e+03 Score=29.79 Aligned_cols=158 Identities=14% Similarity=0.064 Sum_probs=105.1
Q ss_pred ceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeec---CCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1046 SSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLM---NDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1046 ~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~---~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
.+..+-|...++++|+.......+..+.++.++..+..-.. ......-|++...++.|-+++ ..+.|.++++.+..
T Consensus 430 ~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 430 DASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLE 508 (691)
T ss_pred cceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccce
Confidence 35567777777888888767777888887766655543322 234667899999999998777 67899999998765
Q ss_pred EEEEecCC-CCceEEEEc-CCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE-----------EecCCCCcceEEEec
Q psy5806 1123 KKILVNDL-MEPLAIAVY-PRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL-----------VEEDLAFPNELAIDF 1189 (1332)
Q Consensus 1123 ~~~~~~~~-~~P~~iavd-p~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l-----------~~~~l~~p~glaiD~ 1189 (1332)
...+...+ ...++.++. +.++.|-++..++ .++-.++..++.... ..+-.....|+.+|+
T Consensus 509 ~~~l~~rln~~vTa~~~~~~~~~~lvvats~n-------Qv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~ 581 (691)
T KOG2048|consen 509 SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN-------QVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDP 581 (691)
T ss_pred eecchhccCcceeeeeccccccCcEEEEecCC-------eEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCC
Confidence 55443332 334667777 4567787777654 577777744432111 111123456999999
Q ss_pred CCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1190 KQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1190 ~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
++...+|.-. .+.+..+|.++.
T Consensus 582 ~n~s~~~~~~-a~w~~~id~~~~ 603 (691)
T KOG2048|consen 582 KNSSRFIVYD-AHWSCLIDFSLP 603 (691)
T ss_pred CCccEEEEEc-CcEEEEEecCCC
Confidence 8888888754 456777787764
No 256
>KOG0640|consensus
Probab=32.26 E-value=8e+02 Score=28.12 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCcccccc-CcceEEEE-eecceEEEEeCCCCCCCCcccccCCccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc
Q psy5806 1003 DRRSCFSR-TREFLLYT-SRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI 1080 (1332)
Q Consensus 1003 d~~tC~~~-p~~~ll~~-~~~~~i~~i~l~~~~~~~~~~pi~~~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~ 1080 (1332)
|..+|... |...+|.+ .++..|+.++...........-+....++..|.|+|.+..|.+.- ....++.++++ ..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dHp~~rlYdv~---T~ 248 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DHPTLRLYDVN---TY 248 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-CCCceeEEecc---ce
Confidence 34555544 55555554 333336666554333222222345556678999999988777653 44455555644 22
Q ss_pred eeEeecC-----CCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1081 KPIPLMN-----DTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1081 ~~i~~~~-----~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
+-++..+ -+....+-+. .+++||+|-+..+.|..++-
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred eEeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeecc
Confidence 3333322 1134455566 48899999999999977653
No 257
>PRK10115 protease 2; Provisional
Probab=31.68 E-value=1.3e+03 Score=30.17 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=95.3
Q ss_pred EEEEEeCCCcEEEEEeCCCC----eEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCC-----CceEEEEee
Q psy5806 1048 IFFDYHYSKNLIYFADMRSG----NLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQ-----MHTINVARS 1118 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~----~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~-----~~~I~v~~l 1118 (1332)
.++.+++.++.|.++-...| .|+.+++.+|......+ .+.. .+++....++.||++-.. ...|...++
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 34555666666666543332 36777776443211211 1211 334444456778776322 235655666
Q ss_pred CCc--eEEEEecCCCCceEE--EEcCCCcEEEEEecCCCCCCCCCcEEEEec---CCCceEEEEecCCCCcceEEEecCC
Q psy5806 1119 DGQ--HKKILVNDLMEPLAI--AVYPRRGLLFYSHWGLYDNSPTTKIEKVYL---DGSYRTVLVEEDLAFPNELAIDFKQ 1191 (1332)
Q Consensus 1119 dG~--~~~~~~~~~~~P~~i--avdp~~g~Lywtd~~~~~~~~~~~I~r~~l---dG~~~~~l~~~~l~~p~glaiD~~~ 1191 (1332)
... ..+.+..+.+.+..+ .......+|+..-... ..+.+..... +|.. ..++...... -..+...+
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~----~~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~ 279 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA----TTSEVLLLDAELADAEP-FVFLPRRKDH--EYSLDHYQ 279 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC----ccccEEEEECcCCCCCc-eEEEECCCCC--EEEEEeCC
Confidence 533 223344433333332 3332455666443322 2345555553 3432 2333322222 23344456
Q ss_pred CEEEEEEc---CCCeEEEEecCC-CceEEEEe---ecccceEEEecCCccccccEEEEEEC--CCCEEEEEEec
Q psy5806 1192 RRLFWADS---TNKRIEYCDFFG-RSRKIVIS---KVAPYGLSVRQSPGKAFIVELYWTDW--EAMSVVIAREK 1256 (1332)
Q Consensus 1192 ~~LY~~d~---~~~~I~~~d~dG-~~~~~~~~---~~~P~glav~~~~~~~~~~~lYwtd~--~~~~V~~~~~~ 1256 (1332)
+.||+... .+.+|.++++++ .+.+.++. .....++++ ++++|+++-. ....|+.++..
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~-------~~~~l~~~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTL-------FTDWLVVEERQRGLTSLRQINRK 346 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEE-------ECCEEEEEEEeCCEEEEEEEcCC
Confidence 78887754 356788888874 23455554 235667788 7778777764 33445555543
No 258
>KOG0649|consensus
Probab=31.33 E-value=7.6e+02 Score=27.39 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=99.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEE
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKIL 1126 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~ 1126 (1332)
-++-.||.++.|+++- ..+.|+.+++++|.-..+ +.-.-.....++.-..+..| .+..+.++++++++. ++...++
T Consensus 118 Nam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~-~rGHtDYvH~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQRE-YRGHTDYVHSVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEE-EcCCcceeeeeeecccCcce-eecCCCccEEEEeccccceeEEe
Confidence 4667788888888886 777888888886543333 22223355666664445566 467778899999987 5555554
Q ss_pred ec----CCCCc------eEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEE
Q psy5806 1127 VN----DLMEP------LAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFW 1196 (1332)
Q Consensus 1127 ~~----~~~~P------~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~ 1196 (1332)
.. ...+| -++|++.. +| +. |+ .+++.--.|-.+..+.++. +..|.- -+|+.++.+..
T Consensus 195 e~yk~~~~lRp~~g~wigala~~ed--Wl-vC--Gg-----Gp~lslwhLrsse~t~vfp--ipa~v~-~v~F~~d~vl~ 261 (325)
T KOG0649|consen 195 EPYKNPNLLRPDWGKWIGALAVNED--WL-VC--GG-----GPKLSLWHLRSSESTCVFP--IPARVH-LVDFVDDCVLI 261 (325)
T ss_pred ccccChhhcCcccCceeEEEeccCc--eE-Ee--cC-----CCceeEEeccCCCceEEEe--ccccee-EeeeecceEEE
Confidence 32 12222 34555543 33 22 22 3566666777788777765 222222 23444555544
Q ss_pred EEcCCCeEEEEecCCCceEEEEeecccceEEEecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1197 ADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1197 ~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
. ...+.+....+.|.- .+ .-|++=.. .|.+.|...-+..+...
T Consensus 262 ~-G~g~~v~~~~l~Gvl-~a----~ip~~s~~-----------c~s~s~~~~p~k~~s~a 304 (325)
T KOG0649|consen 262 G-GEGNHVQSYTLNGVL-QA----NIPVESTA-----------CYSASWQTSPIKFISIA 304 (325)
T ss_pred e-ccccceeeeeeccEE-EE----eccCCccc-----------eeeecccCCceEEEEec
Confidence 3 334567777776632 11 12333222 56666766666655543
No 259
>KOG0272|consensus
Probab=31.06 E-value=9.9e+02 Score=28.63 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=54.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecC-CeEEEEcCCCceEEEEeeCCceEEE-
Q psy5806 1048 IFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVA-NNIYYIDSQMHTINVARSDGQHKKI- 1125 (1332)
Q Consensus 1048 ~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~-~~LY~td~~~~~I~v~~ldG~~~~~- 1125 (1332)
.+..|. .+..++.+-.-.|.....+..+.....++ ........++.+-+.. +.=-.+.+..+.+..+.++++...-
T Consensus 179 s~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~ 256 (459)
T KOG0272|consen 179 SGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD 256 (459)
T ss_pred eeeEee-cCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh
Confidence 344444 44556677667777776665545333333 2334567778887773 4333555666777777877753322
Q ss_pred EecCCCCceEEEEcCCCcEE
Q psy5806 1126 LVNDLMEPLAIAVYPRRGLL 1145 (1332)
Q Consensus 1126 ~~~~~~~P~~iavdp~~g~L 1145 (1332)
+..-..+...+|++|...+|
T Consensus 257 l~gH~~RVs~VafHPsG~~L 276 (459)
T KOG0272|consen 257 LEGHLARVSRVAFHPSGKFL 276 (459)
T ss_pred hhcchhhheeeeecCCCcee
Confidence 43334566777777744444
No 260
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=30.63 E-value=9.7e+02 Score=28.37 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=76.1
Q ss_pred cCCeEEEEcCCCceEEEEeeCCceEE---EEe---cCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec-CCCce
Q psy5806 1099 VANNIYYIDSQMHTINVARSDGQHKK---ILV---NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL-DGSYR 1171 (1332)
Q Consensus 1099 ~~~~LY~td~~~~~I~v~~ldG~~~~---~~~---~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l-dG~~~ 1171 (1332)
..+++|+... .+.|..++.++.... .+. ..+..|...+ .|+||+..+.. .++..+. +|...
T Consensus 67 ~dg~v~~~~~-~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~g-------~~y~ld~~~G~~~ 134 (370)
T COG1520 67 GDGTVYVGTR-DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWDG-------KLYALDASTGTLV 134 (370)
T ss_pred eCCeEEEecC-CCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEecccc-------eEEEEECCCCcEE
Confidence 3788888732 336666666643211 111 1233344433 78899998754 6788888 67654
Q ss_pred EEEEecC-CCCcceEEEecCCCEEEEEEcCCCeEEEEecC-CCceEEEEeecccceEEEecCCccccccEEEEEECC-CC
Q psy5806 1172 TVLVEED-LAFPNELAIDFKQRRLFWADSTNKRIEYCDFF-GRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWE-AM 1248 (1332)
Q Consensus 1172 ~~l~~~~-l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~d-G~~~~~~~~~~~P~glav~~~~~~~~~~~lYwtd~~-~~ 1248 (1332)
-..-... ........+ .+.++|+.. ..+.+..++.+ |..+-..-.... .++.+.+++. ..++.+|++... ++
T Consensus 135 W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~~~vy~~~~~~~~ 209 (370)
T COG1520 135 WSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPA-IASGTVYVGSDGYDG 209 (370)
T ss_pred EEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-cccccccCce-eecceEEEecCCCcc
Confidence 3332222 011111122 467777764 55778888887 654322110000 1111111111 277889988764 55
Q ss_pred EEEEEEecCC
Q psy5806 1249 SVVIAREKSD 1258 (1332)
Q Consensus 1249 ~V~~~~~~~g 1258 (1332)
.++.+|..+|
T Consensus 210 ~~~a~~~~~G 219 (370)
T COG1520 210 ILYALNAEDG 219 (370)
T ss_pred eEEEEEccCC
Confidence 7888888887
No 261
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=30.39 E-value=41 Score=25.69 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=17.4
Q ss_pred CCceEEEEcCCCcEEEEEecCC
Q psy5806 1131 MEPLAIAVYPRRGLLFYSHWGL 1152 (1332)
Q Consensus 1131 ~~P~~iavdp~~g~Lywtd~~~ 1152 (1332)
..|.+||||+ .|.+|++-...
T Consensus 13 ~~~~~IavD~-~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDS-NGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECC-CCCEEEEEeec
Confidence 5699999998 78999997543
No 262
>KOG0650|consensus
Probab=29.50 E-value=1.5e+02 Score=36.69 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=63.6
Q ss_pred CCCceEEEEeeCCceEEE-EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEE
Q psy5806 1108 SQMHTINVARSDGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELA 1186 (1332)
Q Consensus 1108 ~~~~~I~v~~ldG~~~~~-~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~gla 1186 (1332)
..+.+|.+-.|.-...+. +...-..|..+.++|..-+||++.... |...+|.-...+.-+.++..+...|+
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--------vRiYdL~kqelvKkL~tg~kwiS~ms 614 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--------VRIYDLSKQELVKKLLTGSKWISSMS 614 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--------eEEEehhHHHHHHHHhcCCeeeeeee
Confidence 334455555554322222 323335789999999999999997544 66666654332222334667888999
Q ss_pred EecCCCEEEEEEcCCCeEEEEecCCC
Q psy5806 1187 IDFKQRRLFWADSTNKRIEYCDFFGR 1212 (1332)
Q Consensus 1187 iD~~~~~LY~~d~~~~~I~~~d~dG~ 1212 (1332)
|.+.+..|... +..+++..+|+|=+
T Consensus 615 ihp~GDnli~g-s~d~k~~WfDldls 639 (733)
T KOG0650|consen 615 IHPNGDNLILG-SYDKKMCWFDLDLS 639 (733)
T ss_pred ecCCCCeEEEe-cCCCeeEEEEcccC
Confidence 99999999877 46678888999844
No 263
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=29.14 E-value=91 Score=31.36 Aligned_cols=64 Identities=27% Similarity=0.592 Sum_probs=34.6
Q ss_pred CCCCceecCCCCceEeCCcCcCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEecCCCEEEeeeecCCCCCCCCCCCcccc
Q psy5806 15 EIPQYKKCNRTGACIPAQWQCDNEFDCEM-GEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93 (1332)
Q Consensus 15 c~~~~f~C~~~~~Ci~~~~~CDg~~DC~d-gsDE~~C~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 93 (1332)
|....--|...+.+-+..--|.+ .|.| ++|..+|- .-...|+.++ .|=+|.|+.. .+|+.+|
T Consensus 53 C~~~~~iC~~~~~~~~~~~CC~~--~Cvdv~~d~~nCG--~Cg~~C~~g~-~cC~G~Cvd~------------~~d~~~C 115 (136)
T PF04885_consen 53 CNKDPWICSAKGKCSPGPTCCNN--KCVDVSSDRNNCG--ACGNKCPYGQ-TCCGGQCVDL------------NSDPRHC 115 (136)
T ss_pred cCCCchhhcCCCCCCCCCcccCC--cCCccCCCccccH--hhcCCCCCCc-eecCCEeECC------------CCCcccc
Confidence 44444455422322222223333 5777 45777771 1135677766 5557888876 4677776
Q ss_pred cc
Q psy5806 94 NK 95 (1332)
Q Consensus 94 ~~ 95 (1332)
+.
T Consensus 116 G~ 117 (136)
T PF04885_consen 116 GA 117 (136)
T ss_pred CC
Confidence 54
No 264
>KOG0292|consensus
Probab=28.98 E-value=1.5e+03 Score=30.03 Aligned_cols=141 Identities=12% Similarity=0.124 Sum_probs=84.5
Q ss_pred EeecCCCceEEEEecCCCceEEEecCCCCceEE--EeCCCCCccceeEecCCCeEEEEeCCCCeEEEEeCCCCc-eEEEE
Q psy5806 744 VDVDTKNEYIYWSDISEKTIERVRFDMTGRERL--VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKN-AKVLF 820 (1332)
Q Consensus 744 id~d~~~~~lYwsD~~~~~I~r~~~~g~~~~~v--i~~~~~~p~glAvD~~~~nLYwtD~~~~~I~v~~ldG~~-~~~l~ 820 (1332)
++|.+. --|++|-..+..|.-..++.+..-++ ......++.++-+++ .++|-.+.+...+|.|.+++-.. ..++-
T Consensus 212 aAfhpT-lpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 212 AAFHPT-LPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred EEecCC-cceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeee
Confidence 344442 35556544444444444555544332 334467888888885 55688999999999999996432 22332
Q ss_pred ecCCCCCeEEEEeCCCCeEEEEecccCcCCCCceEEEecCCCCcEEEecccccCceeEEeCCCCCeEEEEeCCCCeEEEE
Q psy5806 821 WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYK 900 (1332)
Q Consensus 821 ~~~~~~P~~Iavdp~~g~lywtd~g~~~~~~~~I~r~~~dG~~~~~l~~~l~~P~gl~iD~~~~~~lYw~d~~~~~I~~~ 900 (1332)
..-++-.-||++|. ..||-+-.... ++.+.++-. +-..+|.. +.||++. ...|.+.
T Consensus 290 -rendRFW~laahP~-lNLfAAgHDsG------m~VFkleRE-----------rpa~~v~~---n~LfYvk--d~~i~~~ 345 (1202)
T KOG0292|consen 290 -RENDRFWILAAHPE-LNLFAAGHDSG------MIVFKLERE-----------RPAYAVNG---NGLFYVK--DRFIRSY 345 (1202)
T ss_pred -ccCCeEEEEEecCC-cceeeeecCCc------eEEEEEccc-----------CceEEEcC---CEEEEEc--cceEEee
Confidence 23467889999998 88988753322 333333322 23444443 4577776 4678888
Q ss_pred ccCCCceeEE
Q psy5806 901 TLATGRAKRA 910 (1332)
Q Consensus 901 ~~dG~~~~~l 910 (1332)
|+....-..+
T Consensus 346 d~~t~~d~~v 355 (1202)
T KOG0292|consen 346 DLRTQKDTAV 355 (1202)
T ss_pred ecccccccee
Confidence 8876443333
No 265
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=28.90 E-value=8.7e+02 Score=27.28 Aligned_cols=178 Identities=16% Similarity=0.103 Sum_probs=92.9
Q ss_pred CCCcEEEEEeCCCC-eEEEEEC-----CCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEE-E-
Q psy5806 1054 YSKNLIYFADMRSG-NLRTFDM-----SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKK-I- 1125 (1332)
Q Consensus 1054 ~~~~~lY~sd~~~~-~I~~~~l-----~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~-~- 1125 (1332)
...+++||++...+ .|..+.. ..+.....+.......-.|-+|= ++.||+--.+...|.+.+|..+... .
T Consensus 28 ~~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 28 SDSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CCCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEE
Confidence 34578999986554 4444321 11111222221111223455554 7999998888889989999865544 2
Q ss_pred -Eec-CC----------CCceEEEEcCCCc-EEEEEecCCCCCCCCCcEEEEecCCCc--eEEEEecCCCCcc---eEEE
Q psy5806 1126 -LVN-DL----------MEPLAIAVYPRRG-LLFYSHWGLYDNSPTTKIEKVYLDGSY--RTVLVEEDLAFPN---ELAI 1187 (1332)
Q Consensus 1126 -~~~-~~----------~~P~~iavdp~~g-~Lywtd~~~~~~~~~~~I~r~~ldG~~--~~~l~~~~l~~p~---glai 1187 (1332)
|.. +. ..=..+|||. +| ++.++.... .+.|..+.||-.. .+....+.+..+. ++-+
T Consensus 106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~-----~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmv 179 (250)
T PF02191_consen 106 ELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDN-----NGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMV 179 (250)
T ss_pred ECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCC-----CCcEEEEeeCcccCceEEEEEeccCchhhcceeeE
Confidence 211 11 1125799997 55 343343332 2456666665544 3333444444332 2222
Q ss_pred ecCCCEEEEEEcCC---CeEE-EEecC-CCceEEEEe----ecccceEEEecCCccccccEEEEEECCC
Q psy5806 1188 DFKQRRLFWADSTN---KRIE-YCDFF-GRSRKIVIS----KVAPYGLSVRQSPGKAFIVELYWTDWEA 1247 (1332)
Q Consensus 1188 D~~~~~LY~~d~~~---~~I~-~~d~d-G~~~~~~~~----~~~P~glav~~~~~~~~~~~lYwtd~~~ 1247 (1332)
=+.||.+++.. .+|. .+|+. |....+-+. ......|.. ++.+..||.=|-+.
T Consensus 180 ---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~Y-----NP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 180 ---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSY-----NPRDKKLYAWDNGY 240 (250)
T ss_pred ---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeE-----CCCCCeEEEEECCe
Confidence 47899998875 3444 33554 333333333 333445555 55677888766543
No 266
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.09 E-value=9.7e+02 Score=27.56 Aligned_cols=98 Identities=15% Similarity=0.272 Sum_probs=61.2
Q ss_pred EEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEE
Q psy5806 1137 AVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKI 1216 (1332)
Q Consensus 1137 avdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~ 1216 (1332)
||+-....|||--|-. .+.+++-.-+|+ .++.+.++..+.....++.+.=+|.|.++..++ -+.-|+--.+
T Consensus 41 AV~~vDd~IyFGGWVH-----APa~y~gk~~g~-~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~---~~WaGEVSdI 111 (339)
T PF09910_consen 41 AVEWVDDFIYFGGWVH-----APAVYEGKGDGR-ATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK---TKWAGEVSDI 111 (339)
T ss_pred eeeeecceEEEeeeec-----CCceeeeccCCc-eEEEEeeccceEEEEEcCCCeEEEEEecccCCc---cccccchhhe
Confidence 4444566999999976 577898888887 444555567777766666666789999886553 2233433222
Q ss_pred EEeecccceEEEecCCccccccEEEEEEC---CCCEEEEEEecCC
Q psy5806 1217 VISKVAPYGLSVRQSPGKAFIVELYWTDW---EAMSVVIAREKSD 1258 (1332)
Q Consensus 1217 ~~~~~~P~glav~~~~~~~~~~~lYwtd~---~~~~V~~~~~~~g 1258 (1332)
+. |++++.||++-. .+=.|++++..+|
T Consensus 112 lY---------------dP~~D~LLlAR~DGh~nLGvy~ldr~~g 141 (339)
T PF09910_consen 112 LY---------------DPYEDRLLLARADGHANLGVYSLDRRTG 141 (339)
T ss_pred ee---------------CCCcCEEEEEecCCcceeeeEEEcccCC
Confidence 22 335566666653 2234666666665
No 267
>PHA02790 Kelch-like protein; Provisional
Probab=27.33 E-value=1.3e+03 Score=28.67 Aligned_cols=143 Identities=11% Similarity=0.086 Sum_probs=76.1
Q ss_pred cCCeEEEEcCC--CceEEEEeeCCc-eEEEEecCCCCce-EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE
Q psy5806 1099 VANNIYYIDSQ--MHTINVARSDGQ-HKKILVNDLMEPL-AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL 1174 (1332)
Q Consensus 1099 ~~~~LY~td~~--~~~I~v~~ldG~-~~~~~~~~~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l 1174 (1332)
.++.||+.-.. ...++..+.... -.. + ..+..|+ +.++-..+|+||..--.. .....+++.+.....-+ .
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~-~-~~l~~~r~~~~~~~~~g~IYviGG~~---~~~~~ve~ydp~~~~W~-~ 390 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVN-M-PSLLKPRCNPAVASINNVIYVIGGHS---ETDTTTEYLLPNHDQWQ-F 390 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEE-C-CCCCCCCcccEEEEECCEEEEecCcC---CCCccEEEEeCCCCEEE-e
Confidence 57899998543 235666665322 121 1 2333344 222233478999884321 11245777776543332 2
Q ss_pred EecCCCCcc-eEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEee---cccceEEEecCCccccccEEEEEECC----
Q psy5806 1175 VEEDLAFPN-ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISK---VAPYGLSVRQSPGKAFIVELYWTDWE---- 1246 (1332)
Q Consensus 1175 ~~~~l~~p~-glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~---~~P~glav~~~~~~~~~~~lYwtd~~---- 1246 (1332)
+. .+..|. +.++-.-+++||+.- +..+++|++....+.+.+. ..-.|+++ .++.||+.--.
T Consensus 391 ~~-~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v-------~~~~IYviGG~~~~~ 459 (480)
T PHA02790 391 GP-STYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII-------VDNKLLLIGGFYRGS 459 (480)
T ss_pred CC-CCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE-------ECCEEEEECCcCCCc
Confidence 22 222222 111112368999974 4578888876655555542 22357888 89999997421
Q ss_pred -CCEEEEEEecCC
Q psy5806 1247 -AMSVVIAREKSD 1258 (1332)
Q Consensus 1247 -~~~V~~~~~~~g 1258 (1332)
...|.+.|..++
T Consensus 460 ~~~~ve~Yd~~~~ 472 (480)
T PHA02790 460 YIDTIEVYNNRTY 472 (480)
T ss_pred ccceEEEEECCCC
Confidence 234555555443
No 268
>KOG3881|consensus
Probab=26.62 E-value=4.3e+02 Score=31.19 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=72.8
Q ss_pred CeEEEEcCCCceEEEEeeCCceEEE--EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEE---
Q psy5806 1101 NNIYYIDSQMHTINVARSDGQHKKI--LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV--- 1175 (1332)
Q Consensus 1101 ~~LY~td~~~~~I~v~~ldG~~~~~--~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~--- 1175 (1332)
.+-++|-...+.++.++..-..|-+ +.-.......+++.|....||+++... .+..+++.+ ...+.
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g-------~l~~FD~r~--~kl~g~~~ 286 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG-------QLAKFDLRG--GKLLGCGL 286 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc-------hhheecccC--ceeecccc
Confidence 4555677777788888887433333 322334567899999999999998654 466555544 33332
Q ss_pred ecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe---ecccceEEE
Q psy5806 1176 EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS---KVAPYGLSV 1228 (1332)
Q Consensus 1176 ~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~---~~~P~glav 1228 (1332)
..--+.+.+|..++..+ |.+-.+.+|..|+ +|-..|..+.. .+++..|-+
T Consensus 287 kg~tGsirsih~hp~~~--~las~GLDRyvRI-hD~ktrkll~kvYvKs~lt~il~ 339 (412)
T KOG3881|consen 287 KGITGSIRSIHCHPTHP--VLASCGLDRYVRI-HDIKTRKLLHKVYVKSRLTFILL 339 (412)
T ss_pred CCccCCcceEEEcCCCc--eEEeeccceeEEE-eecccchhhhhhhhhccccEEEe
Confidence 21235677888886544 4455677776665 33334555554 788888877
No 269
>KOG0290|consensus
Probab=25.37 E-value=1.1e+03 Score=27.08 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=33.2
Q ss_pred CCCCceeeEEEecCCeEEEEcCCCceEEEEeeC-CceEEEEecC
Q psy5806 1087 NDTIRDNFVIDWVANNIYYIDSQMHTINVARSD-GQHKKILVND 1129 (1332)
Q Consensus 1087 ~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ld-G~~~~~~~~~ 1129 (1332)
.-.....||+-..++.+|.+-...+.+++++|. .++.+++-++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 344678999988889999998889999999996 4455555444
No 270
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=25.25 E-value=2e+02 Score=35.70 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=44.0
Q ss_pred cCCCCCeEEEEeCCCCeEEEEecccCc-----------CCCCceEEEecCCC---Cc----EEEec--------------
Q psy5806 822 LNLYRPRSIVVHYGLGLMVWADWSRTR-----------LTNNRIEMAHMDGT---NR----AVFET-------------- 869 (1332)
Q Consensus 822 ~~~~~P~~Iavdp~~g~lywtd~g~~~-----------~~~~~I~r~~~dG~---~~----~~l~~-------------- 869 (1332)
.-+++|..|+++|..|.+|++.....+ -.-.+|.|....+. .. ..++.
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~ 493 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASAN 493 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccC
Confidence 346889999999999999999765431 01244666533321 11 12211
Q ss_pred ---c-cccCceeEEeCCCCCeEEEEeCC
Q psy5806 870 ---E-VIWPSCLAIDYSDNPKLYWVDTS 893 (1332)
Q Consensus 870 ---~-l~~P~gl~iD~~~~~~lYw~d~~ 893 (1332)
. +..|.+|++|..+ +|+.+...
T Consensus 494 ~~~~~f~~PDnl~fD~~G--rLWi~TDg 519 (616)
T COG3211 494 INANWFNSPDNLAFDPWG--RLWIQTDG 519 (616)
T ss_pred cccccccCCCceEECCCC--CEEEEecC
Confidence 1 4459999999987 88776543
No 271
>PHA03098 kelch-like protein; Provisional
Probab=25.09 E-value=1.4e+03 Score=28.50 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=74.6
Q ss_pred ecCCeEEEEcCCC-----ceEEEEeeCCceEEEEecCCCCce-EEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCce
Q psy5806 1098 WVANNIYYIDSQM-----HTINVARSDGQHKKILVNDLMEPL-AIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171 (1332)
Q Consensus 1098 w~~~~LY~td~~~-----~~I~v~~ldG~~~~~~~~~~~~P~-~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~ 1171 (1332)
..++.||+.-... +.+++.+.....=..+ ..+..|+ +.++-..++.||..--....+.....+++.++....-
T Consensus 340 ~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 340 VFNNRIYVIGGIYNSISLNTVESWKPGESKWREE-PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred EECCEEEEEeCCCCCEecceEEEEcCCCCceeeC-CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 3578999975432 3455666553221111 1222232 1122223679998742110111235688888765433
Q ss_pred EEEEecCCCCcc-eEEEecCCCEEEEEEcC--------CCeEEEEecCCCceEEEEeeccc---ceEEEecCCccccccE
Q psy5806 1172 TVLVEEDLAFPN-ELAIDFKQRRLFWADST--------NKRIEYCDFFGRSRKIVISKVAP---YGLSVRQSPGKAFIVE 1239 (1332)
Q Consensus 1172 ~~l~~~~l~~p~-glaiD~~~~~LY~~d~~--------~~~I~~~d~dG~~~~~~~~~~~P---~glav~~~~~~~~~~~ 1239 (1332)
+.+ . .+..|. +.+.-..+++||+.-.. .+.++++|......+.+.....| .++++ .++.
T Consensus 419 ~~~-~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-------~~~~ 489 (534)
T PHA03098 419 SKG-S-PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-------FNNK 489 (534)
T ss_pred eec-C-CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-------ECCE
Confidence 322 1 111111 12222246789987432 23488888865554444332222 35566 7888
Q ss_pred EEEEECC-----CCEEEEEEecCC
Q psy5806 1240 LYWTDWE-----AMSVVIAREKSD 1258 (1332)
Q Consensus 1240 lYwtd~~-----~~~V~~~~~~~g 1258 (1332)
||+.--. .+.|.+.|..+.
T Consensus 490 iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 490 IYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEEcCCcCCcccceeEEEeCCCC
Confidence 9887532 345666665543
No 272
>KOG3545|consensus
Probab=24.89 E-value=4.2e+02 Score=29.52 Aligned_cols=145 Identities=15% Similarity=0.185 Sum_probs=77.5
Q ss_pred CcEEEEEeCCCCeEEEEECCCCCCcee--EeecCCCCc----------eeeEEEecCCe-EEEEcCCCceEEEEeeCCce
Q psy5806 1056 KNLIYFADMRSGNLRTFDMSDSTRIKP--IPLMNDTIR----------DNFVIDWVANN-IYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1056 ~~~lY~sd~~~~~I~~~~l~~g~~~~~--i~~~~~~~p----------~glAvDw~~~~-LY~td~~~~~I~v~~ldG~~ 1122 (1332)
++.+|+--.++..|.+++|+....... +-..+...+ -.+|+|..+=. ||-+..+.+.|.+.+||-..
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~t 156 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPET 156 (249)
T ss_pred cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHH
Confidence 477888777777888888874332221 111222234 57999954443 55566667788888888643
Q ss_pred EEE--Ee-cCCCCc---eEEEEcCCCcEEEEEecCCCCCCCCCcE-EEEecCCCce-EE--EEecCCCCcceEEEecCCC
Q psy5806 1123 KKI--LV-NDLMEP---LAIAVYPRRGLLFYSHWGLYDNSPTTKI-EKVYLDGSYR-TV--LVEEDLAFPNELAIDFKQR 1192 (1332)
Q Consensus 1123 ~~~--~~-~~~~~P---~~iavdp~~g~Lywtd~~~~~~~~~~~I-~r~~ldG~~~-~~--l~~~~l~~p~glaiD~~~~ 1192 (1332)
..+ .+ +.+.++ .+..| -|.||..++.. .....| +..+...+.. .+ .+.+.....+.|.-.+.++
T Consensus 157 l~~e~tW~T~~~k~~~~~aF~i---CGvLY~v~S~~---~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~ 230 (249)
T KOG3545|consen 157 LEVERTWNTTLPKRSAGNAFMI---CGVLYVVHSYN---CTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDR 230 (249)
T ss_pred hheeeeeccccCCCCcCceEEE---eeeeEEEeccc---cCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccc
Confidence 332 22 233322 22333 47889998664 122334 4455542222 11 1222233344455556788
Q ss_pred EEEEEEcCCCeEEEEe
Q psy5806 1193 RLFWADSTNKRIEYCD 1208 (1332)
Q Consensus 1193 ~LY~~d~~~~~I~~~d 1208 (1332)
+||.=|- +....++
T Consensus 231 ~LY~wdn--g~~l~y~ 244 (249)
T KOG3545|consen 231 RLYAWDN--GHQLTYN 244 (249)
T ss_pred eeeEecC--CcEEEEE
Confidence 8987543 3344443
No 273
>KOG1517|consensus
Probab=24.58 E-value=1.3e+03 Score=31.32 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=76.8
Q ss_pred ceeeEEEec--CCeEEEEcCCCceEEEEeeCCceEEE-E-ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEec
Q psy5806 1091 RDNFVIDWV--ANNIYYIDSQMHTINVARSDGQHKKI-L-VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYL 1166 (1332)
Q Consensus 1091 p~glAvDw~--~~~LY~td~~~~~I~v~~ldG~~~~~-~-~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~l 1166 (1332)
-.|+.+||. .+.||.+.. ...|+++|++-+.... + .+...-++++.-|-..|.++.+.... ++|...++
T Consensus 1166 ~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD------GsvRvyD~ 1238 (1387)
T KOG1517|consen 1166 GTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFAD------GSVRVYDR 1238 (1387)
T ss_pred CCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecC------CceEEeec
Confidence 457999995 677988754 5578899998776544 2 23335678888777788998887665 34444433
Q ss_pred CCCceEEEEe---c--CCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEe-------ecccceEEE
Q psy5806 1167 DGSYRTVLVE---E--DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS-------KVAPYGLSV 1228 (1332)
Q Consensus 1167 dG~~~~~l~~---~--~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~-------~~~P~glav 1228 (1332)
--..+..++. . ......++.+-..+-.=.++-+.+|.|+..|+.+..++.... ++.-.+|++
T Consensus 1239 R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~V 1312 (1387)
T KOG1517|consen 1239 RMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTV 1312 (1387)
T ss_pred ccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeee
Confidence 2222212211 1 111134455544333334566778889998888754433332 333556666
No 274
>KOG2096|consensus
Probab=24.48 E-value=1.1e+03 Score=27.14 Aligned_cols=143 Identities=13% Similarity=0.020 Sum_probs=0.0
Q ss_pred CCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-----EecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEE
Q psy5806 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-----LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163 (1332)
Q Consensus 1089 ~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-----~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r 1163 (1332)
+...++++...+..| .|-.....|++++++....+. ..-..++|..+++.|.-..+.++-..+ .+|+.
T Consensus 87 ~~vt~~~FsSdGK~l-at~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g------~~l~v 159 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKL-ATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG------NKLCV 159 (420)
T ss_pred CceeeeEEcCCCcee-EEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC------CEEEE
Q ss_pred Eec----CCCceEEEEecC------CCCcceEEEecCCCEEEEEEcCCCe-EEEEecCCCceEEEEe-ecccceEEEecC
Q psy5806 1164 VYL----DGSYRTVLVEED------LAFPNELAIDFKQRRLFWADSTNKR-IEYCDFFGRSRKIVIS-KVAPYGLSVRQS 1231 (1332)
Q Consensus 1164 ~~l----dG~~~~~l~~~~------l~~p~glaiD~~~~~LY~~d~~~~~-I~~~d~dG~~~~~~~~-~~~P~glav~~~ 1231 (1332)
..| ||+.....+..+ .....-|.|-..++-.|++.+..+. |.-.++.|.....+-. ...-+--++
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aav--- 236 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAV--- 236 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceee---
Q ss_pred CccccccEEEEE
Q psy5806 1232 PGKAFIVELYWT 1243 (1332)
Q Consensus 1232 ~~~~~~~~lYwt 1243 (1332)
++.+.+|-.+
T Consensus 237 --SP~GRFia~~ 246 (420)
T KOG2096|consen 237 --SPDGRFIAVS 246 (420)
T ss_pred --CCCCcEEEEe
No 275
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.84 E-value=58 Score=31.83 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=22.4
Q ss_pred cccCCCCcceeeeccCCCceEEeCCCCceecCCCCCcCC
Q psy5806 393 QSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431 (1332)
Q Consensus 393 ~n~C~~g~CshlCl~~~~~~~C~C~~G~~L~~d~~tC~~ 431 (1332)
.+-|-+|.|-++ +.-..+.|.|+.||. |.+|+.
T Consensus 50 ~~YClHG~C~yI--~dl~~~~CrC~~GYt----GeRCEh 82 (139)
T PHA03099 50 DGYCLHGDCIHA--RDIDGMYCRCSHGYT----GIRCQH 82 (139)
T ss_pred CCEeECCEEEee--ccCCCceeECCCCcc----cccccc
Confidence 455666655443 333589999999997 668953
No 276
>KOG0282|consensus
Probab=23.72 E-value=1.1e+03 Score=28.64 Aligned_cols=102 Identities=9% Similarity=0.083 Sum_probs=64.4
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-EE
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK-KI 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~-~~ 1125 (1332)
|.-+-|.|.+..+|++-...++|...++.+|.-.+.. ...++....|.+=. .+.=|++.+....+.++...-... +-
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-d~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~ 379 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-DRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKN 379 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-HhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchh
Confidence 5667788888899999999999999998865433222 24466677777653 444456666666777777753322 11
Q ss_pred -EecCCCCceEEEEcCCCcEEEEEecC
Q psy5806 1126 -LVNDLMEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1126 -~~~~~~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
+....-.-..|+++| ++..|-+...
T Consensus 380 i~~~~~hsmP~~~~~P-~~~~~~aQs~ 405 (503)
T KOG0282|consen 380 IADPEMHTMPCLTLHP-NGKWFAAQSM 405 (503)
T ss_pred hcchhhccCcceecCC-CCCeehhhcc
Confidence 222333445788999 4555555433
No 277
>KOG0640|consensus
Probab=23.61 E-value=1.2e+03 Score=26.92 Aligned_cols=217 Identities=12% Similarity=0.013 Sum_probs=112.1
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCcee--EeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCce
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP--IPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQH 1122 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~--i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~ 1122 (1332)
..+..++|+|.+. |..+....+.|.-++.. .+..+. -+.........|.+.+.+..|-+. .....++..+++...
T Consensus 173 devn~l~FHPre~-ILiS~srD~tvKlFDfs-K~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 173 DEVNDLDFHPRET-ILISGSRDNTVKLFDFS-KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPTLRLYDVNTYQ 249 (430)
T ss_pred Ccccceeecchhh-eEEeccCCCeEEEEecc-cHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCceeEEecccee
Confidence 3456889999875 66777788889888865 222211 111344567889999888887664 345577778887654
Q ss_pred EEEEe-cC---CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEE---EEec-CCCCcceEEEecCCCEE
Q psy5806 1123 KKILV-ND---LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTV---LVEE-DLAFPNELAIDFKQRRL 1194 (1332)
Q Consensus 1123 ~~~~~-~~---~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~---l~~~-~l~~p~glaiD~~~~~L 1194 (1332)
-.+-. .+ ......+-.++ +|.||+|.... +.|..- ||-..+- +-.. +-.......+. ++++
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkD------G~Iklw--DGVS~rCv~t~~~AH~gsevcSa~Ft-kn~k- 318 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSS-TGSLYVTASKD------GAIKLW--DGVSNRCVRTIGNAHGGSEVCSAVFT-KNGK- 318 (430)
T ss_pred EeeecCcccccccceeEEEecC-CccEEEEeccC------CcEEee--ccccHHHHHHHHhhcCCceeeeEEEc-cCCe-
Confidence 44411 11 12345566676 89999998665 233222 3321111 1000 00000111111 2222
Q ss_pred EEEEcCCCeEEEEecCCCceEEEEe-ec------ccceEEEecCCccccccEEEEEECCCCEEEEEEecCCCCcceEEEE
Q psy5806 1195 FWADSTNKRIEYCDFFGRSRKIVIS-KV------APYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLI 1267 (1332)
Q Consensus 1195 Y~~d~~~~~I~~~d~dG~~~~~~~~-~~------~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~~~~g~~~~~~~~~ 1267 (1332)
|+-.++.+.+.+.=-=++.|.++.- +. .-..-|+ -...++++.+.|..++++...|.-++ ..+.++
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv----FNhtEdyVl~pDEas~slcsWdaRta---dr~~l~ 391 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV----FNHTEDYVLFPDEASNSLCSWDARTA---DRVALL 391 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh----hcCccceEEccccccCceeeccccch---hhhhhc
Confidence 2223343343333222333332221 10 0111122 12367899999999999998887776 445555
Q ss_pred ecCCCCeeeEEEEeC
Q psy5806 1268 RSNQEDFLNIKAISA 1282 (1332)
Q Consensus 1268 ~~~~~~~~~i~~~~~ 1282 (1332)
..+-.++-.-.+.++
T Consensus 392 slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 392 SLGHNGAVRWIVHSP 406 (430)
T ss_pred ccCCCCCceEEEeCC
Confidence 555555544433333
No 278
>KOG0973|consensus
Probab=23.39 E-value=5.9e+02 Score=33.88 Aligned_cols=116 Identities=8% Similarity=-0.007 Sum_probs=67.5
Q ss_pred eEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-
Q psy5806 1047 SIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI- 1125 (1332)
Q Consensus 1047 ~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~- 1125 (1332)
+..+.|+|. +.+..+-...++|...+.... ....++....+-+-|+++|++++.+ .+.+....|.++++.-.....
T Consensus 132 V~Dv~Wsp~-~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~-ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 132 VLDVNWSPD-DSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYF-ASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred cceeccCCC-ccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCee-eeecCCceEEEEEcccceeeEe
Confidence 467778884 456666556677777775533 3334444456679999999988765 556667788899865432222
Q ss_pred EecC------CCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCC
Q psy5806 1126 LVND------LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDG 1168 (1332)
Q Consensus 1126 ~~~~------~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG 1168 (1332)
+... ...-+.+.=+|...+|-.++.-. .+.+.|..+..++
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n---~~~~~~~IieR~t 254 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN---GGKSTIAIIERGT 254 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhcc---CCcceeEEEecCC
Confidence 3221 12234455677555554444322 3445566555533
No 279
>KOG0650|consensus
Probab=23.35 E-value=2.6e+02 Score=34.74 Aligned_cols=93 Identities=18% Similarity=0.118 Sum_probs=62.6
Q ss_pred cceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceE-
Q psy5806 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK- 1123 (1332)
Q Consensus 1045 ~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~- 1123 (1332)
+.+..+.|++..-.+|++.. ..++.++|....-+.. +..+......||+++.+.||..... .+++-.+++|-+..
T Consensus 567 G~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKk-L~tg~kwiS~msihp~GDnli~gs~-d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKK-LLTGSKWISSMSIHPNGDNLILGSY-DKKMCWFDLDLSSKP 642 (733)
T ss_pred CceeEEEecCCCceEEEEec--cceEEEehhHHHHHHH-HhcCCeeeeeeeecCCCCeEEEecC-CCeeEEEEcccCcch
Confidence 45789999999999999864 4455566552222222 2356778899999999999977655 45888999996522
Q ss_pred -EEEecCCCCceEEEEcCC
Q psy5806 1124 -KILVNDLMEPLAIAVYPR 1141 (1332)
Q Consensus 1124 -~~~~~~~~~P~~iavdp~ 1141 (1332)
+.+.--....+.+|+++.
T Consensus 643 yk~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 643 YKTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred hHHhhhhhhhhhhhhhccc
Confidence 222212234577888874
No 280
>KOG0301|consensus
Probab=22.45 E-value=1.2e+03 Score=29.71 Aligned_cols=140 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred EEEecCCeEEEEcCCCceEEEEeeCCceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEE
Q psy5806 1095 VIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVL 1174 (1332)
Q Consensus 1095 AvDw~~~~LY~td~~~~~I~v~~ldG~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l 1174 (1332)
||-....+.|+|-+....|..+.- |+..+++..-.+-.||+|+-|..++|=-.+.|. |.+-+++|.-....
T Consensus 145 Av~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~--------Ir~w~~~ge~l~~~ 215 (745)
T KOG0301|consen 145 AVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGS--------IRLWDLDGEVLLEM 215 (745)
T ss_pred eeeecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCce--------EEEEeccCceeeee
Q ss_pred EecCCCCcceEEEecCCCEEEEEEcCCCeEEEEecCCCceEEEEeecccceEEEecCCcccc-ccEEEEEECCCCEEEEE
Q psy5806 1175 VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAF-IVELYWTDWEAMSVVIA 1253 (1332)
Q Consensus 1175 ~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~~~~~~~~~~P~glav~~~~~~~~-~~~lYwtd~~~~~V~~~ 1253 (1332)
.... .+...|+ -.-++.+.++-...++++--+-+-....+.++.....+..+ . +|.|++.- ..|.|+.+
T Consensus 216 ~ght-n~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~-------L~NgDIvvg~-SDG~VrVf 285 (745)
T KOG0301|consen 216 HGHT-NFVYSIS-MALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKV-------LLNGDIVVGG-SDGRVRVF 285 (745)
T ss_pred eccc-eEEEEEE-ecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEE-------eeCCCEEEec-cCceEEEE
No 281
>KOG0772|consensus
Probab=21.39 E-value=1.6e+03 Score=27.74 Aligned_cols=201 Identities=9% Similarity=-0.058 Sum_probs=118.1
Q ss_pred ccceEEEEEeCCCcEEEEEeCCCCeEEEEECCCCCCce-----eEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEee
Q psy5806 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK-----PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118 (1332)
Q Consensus 1044 ~~~~~~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~-----~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~l 1118 (1332)
.+-+.++++|+.+-++|-.. -...|.-.+++ |-... .+..........|++...++.|.+.. +...+.+++-
T Consensus 167 tk~Vsal~~Dp~GaR~~sGs-~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs-g~aqakl~DR 243 (641)
T KOG0772|consen 167 TKIVSALAVDPSGARFVSGS-LDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS-GSAQAKLLDR 243 (641)
T ss_pred ceEEEEeeecCCCceeeecc-ccceEEEEecc-cccccchhhhccCcccccccceeeecCCCCeEEEEe-cCcceeEEcc
Confidence 34467889998887765433 44456666665 32221 12222344567888887777776654 4456778999
Q ss_pred CCceEEEEecCC----------CC---ceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCC----CC
Q psy5806 1119 DGQHKKILVNDL----------ME---PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDL----AF 1181 (1332)
Q Consensus 1119 dG~~~~~~~~~~----------~~---P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l----~~ 1181 (1332)
||........+- .+ ...-.-+|.+.-.|.|-... ++-+|+-++-.-++.++|..... ..
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D----gtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD----GTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC----CcEEEEecCCchhheeEEeeccCCCcccC
Confidence 997654422211 11 22233577777777776544 35678877777777777754321 12
Q ss_pred cceEEEecCCCEEEEEEcCCCeEEEEecCCCc--eEEEEe-----ecccceEEEecCCccccccEEEEEECCCCEEEEEE
Q psy5806 1182 PNELAIDFKQRRLFWADSTNKRIEYCDFFGRS--RKIVIS-----KVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAR 1254 (1332)
Q Consensus 1182 p~glaiD~~~~~LY~~d~~~~~I~~~d~dG~~--~~~~~~-----~~~P~glav~~~~~~~~~~~lYwtd~~~~~V~~~~ 1254 (1332)
|..-+++.++++ +-+--..+.|..-++-+.. ....+. +....+|++ -++|+..-+-...+++...+
T Consensus 320 ~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F------S~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 320 VTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF------SYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred ceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe------ccccchhhhccCCCceeeee
Confidence 445577766554 4344467888887773322 222232 456778888 35555555666777777777
Q ss_pred ecCC
Q psy5806 1255 EKSD 1258 (1332)
Q Consensus 1255 ~~~g 1258 (1332)
+..-
T Consensus 393 Lrq~ 396 (641)
T KOG0772|consen 393 LRQF 396 (641)
T ss_pred cccc
Confidence 6543
No 282
>KOG1445|consensus
Probab=21.13 E-value=1.7e+03 Score=28.08 Aligned_cols=196 Identities=13% Similarity=0.053 Sum_probs=102.8
Q ss_pred ccceEEEEEeCCC-cEEEEEeCCCCeE--EEEECCCCCC----ceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEE
Q psy5806 1044 YMSSIFFDYHYSK-NLIYFADMRSGNL--RTFDMSDSTR----IKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVA 1116 (1332)
Q Consensus 1044 ~~~~~~id~d~~~-~~lY~sd~~~~~I--~~~~l~~g~~----~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~ 1116 (1332)
..++..+.+|+=+ .+|-++- ..+.| .++..+++.. .+.++.........|-+.+.+-++..+.+...+|+.+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~-ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVAT-DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecc-cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 3456788888654 4555543 45555 4555442221 2345545566777888888887777766677799999
Q ss_pred eeCC-ceEEEEecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEE
Q psy5806 1117 RSDG-QHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLF 1195 (1332)
Q Consensus 1117 ~ldG-~~~~~~~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY 1195 (1332)
++.. ...-.+..-.+...+||-+|. |++.-|--.. ++|.......+.. .+.. + ..|.| ..+-||.
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpd-Gr~~AtVcKD------g~~rVy~Prs~e~-pv~E-g-~gpvg----tRgARi~ 771 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPD-GRRIATVCKD------GTLRVYEPRSREQ-PVYE-G-KGPVG----TRGARIL 771 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCC-CcceeeeecC------ceEEEeCCCCCCC-cccc-C-CCCcc----CcceeEE
Confidence 9973 333335444567889999985 4443332222 3454444433222 2222 2 23444 3566777
Q ss_pred EEEcCCCeEEEEecCCC-ceEEEEe-----ecccce---EEE-----ecCCccccccEEEEEECCCCEEEEEEec
Q psy5806 1196 WADSTNKRIEYCDFFGR-SRKIVIS-----KVAPYG---LSV-----RQSPGKAFIVELYWTDWEAMSVVIAREK 1256 (1332)
Q Consensus 1196 ~~d~~~~~I~~~d~dG~-~~~~~~~-----~~~P~g---lav-----~~~~~~~~~~~lYwtd~~~~~V~~~~~~ 1256 (1332)
|+=-+ .-|...-+|-. .|++.+- ...|.. |.+ .-+|| .+.+.||.|--+...|+.+...
T Consensus 772 wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD-~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 772 WACDG-RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYD-YDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred EEecC-cEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccccccc-CCCceEEEecCCCceEEEEEec
Confidence 76322 23445555532 3444431 112221 111 01222 2344567776666666666543
No 283
>KOG0276|consensus
Probab=20.75 E-value=1.8e+03 Score=28.05 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=64.8
Q ss_pred EEEeCCCcEEEEEeCCCCeEEEEECCCCCCceeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-Eec
Q psy5806 1050 FDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVN 1128 (1332)
Q Consensus 1050 id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~~~ 1128 (1332)
-.|-+..++|-.. .....|+.++.+.+..+.++ .........|||.+ +.-...+.+..-.|..++.+++-.-. ..+
T Consensus 61 ~kfiaRknWiv~G-sDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfe 137 (794)
T KOG0276|consen 61 AKFIARKNWIVTG-SDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFE 137 (794)
T ss_pred heeeeccceEEEe-cCCceEEEEecccceeeEEe-eccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEc
Confidence 3455555555443 36677998887755444433 34556788999996 34444566777789999999876544 334
Q ss_pred CC-CCceEEEEcCCCcEEEEEecC
Q psy5806 1129 DL-MEPLAIAVYPRRGLLFYSHWG 1151 (1332)
Q Consensus 1129 ~~-~~P~~iavdp~~g~Lywtd~~ 1151 (1332)
+- -....||+.|+...-|.+..-
T Consensus 138 GH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 138 GHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred CcceEEEEEEecCCCccceeeeec
Confidence 43 347889999987777776543
No 284
>KOG2321|consensus
Probab=20.32 E-value=1.8e+03 Score=27.81 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=86.2
Q ss_pred EEEEeCCCcEEEEEeCCCCeEEEEECCCCCCc-eeEeecCCCCceeeEEEecCCeEEEEcCCCceEEEEeeCCceEEE-E
Q psy5806 1049 FFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI-KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-L 1126 (1332)
Q Consensus 1049 ~id~d~~~~~lY~sd~~~~~I~~~~l~~g~~~-~~i~~~~~~~p~glAvDw~~~~LY~td~~~~~I~v~~ldG~~~~~-~ 1126 (1332)
.|-..+.++.|.-+-.....|..+++++-+-. +..+.+.+-.-+=|.=|| +..++.-+ ...|+.-.--|.+-.+ +
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-SK~v~L~~--DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-SKSVFLQN--DRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-hhheEeec--CceeeehhhcCeeeeeec
Confidence 44557777777777666777888887642211 111111111111122232 33333221 2245544444555444 3
Q ss_pred ecCCCCceEEEEcCCCcEEEEEecCCCCCCCCCcEEEEecCCCceEEEEecCCCCcceEEEecCCCEEEEEEcCCCeEEE
Q psy5806 1127 VNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEY 1206 (1332)
Q Consensus 1127 ~~~~~~P~~iavdp~~g~Lywtd~~~~~~~~~~~I~r~~ldG~~~~~l~~~~l~~p~glaiD~~~~~LY~~d~~~~~I~~ 1206 (1332)
. . .=+.|+++..+--||....+. .|+|.+|+-..--.-+.+.....|.+.|...++.|- +-...+.++.
T Consensus 133 P-~--~GRDm~y~~~scDly~~gsg~-------evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla-~Gt~~g~VEf 201 (703)
T KOG2321|consen 133 P-K--FGRDMKYHKPSCDLYLVGSGS-------EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA-CGTEDGVVEF 201 (703)
T ss_pred C-c--CCccccccCCCccEEEeecCc-------ceEEEEccccccccccccccccceeeeecCccceEE-ecccCceEEE
Confidence 1 1 237888888888999998764 799999976553333333445566677776655443 4455778888
Q ss_pred EecCCCceEEEE
Q psy5806 1207 CDFFGRSRKIVI 1218 (1332)
Q Consensus 1207 ~d~dG~~~~~~~ 1218 (1332)
.|..-..+...+
T Consensus 202 wDpR~ksrv~~l 213 (703)
T KOG2321|consen 202 WDPRDKSRVGTL 213 (703)
T ss_pred ecchhhhhheee
Confidence 777655544433
Done!