RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5806
(1332 letters)
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 475 bits (1224), Expect = e-153
Identities = 220/597 (36%), Positives = 328/597 (54%), Gaps = 59/597 (9%)
Query: 163 RVSLSNKK--YTAIIRNLHNVLAVDYHYKKNLLVW------------------NTHIVHT 202
V +N K T ++ L + AVD+ + L+ W ++V +
Sbjct: 22 LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 81
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ S L+ DW+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F+
Sbjct: 82 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 141
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WTDWG+ PKIER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LD
Sbjct: 142 YWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G+ RQ V+ LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I
Sbjct: 202 GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 261
Query: 383 SYHPHRQPNYQSHCAPKV--CSHICL--PNKHRFTCQCPLGLTLSPDNKSCSESPEELLI 438
++ RQPN + C CSH+CL P K + C CP G+ L + K+C + ELL+
Sbjct: 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321
Query: 439 YARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING 498
AR+ DLR L P T VL + +++ +AI ++ +YW D E I R+ I+G
Sbjct: 322 LARRTDLRRISLDTPDFTD-IVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG 380
Query: 499 TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDI 558
+ V+ P G+A+DW LYWT++ + IEV+ L+GT +L ++L EPR I
Sbjct: 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAI 440
Query: 559 AVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGL 618
++P+ G MYW WG++ KIE A +DGS R +L + SL P GLA+D + ++YW +
Sbjct: 441 VLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT 500
Query: 619 KTIEFTNLDGTRKQTLIALHHL---------------------------------KVMTK 645
IE N DGT ++ L+ ++ +
Sbjct: 501 DKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ 560
Query: 646 VVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
+ L + + R ++PC E NGGCSHLCL P G+RC CP G L D +TC
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP-QGLRCACPIGFELISDMKTC 616
Score = 440 bits (1131), Expect = e-140
Identities = 214/620 (34%), Positives = 311/620 (50%), Gaps = 48/620 (7%)
Query: 429 CSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVEN 488
LL+YA ++DLR+ T + + V ++ A+ + ++ +YW+DV
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDAT--NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSE 61
Query: 489 GEINRAHINGT-FQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLL 547
I R N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +L
Sbjct: 62 EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL 121
Query: 548 FWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLE 607
FWQ L +PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E
Sbjct: 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE 181
Query: 608 NSRLYWANVGLKTIEFTNLDGTRKQTLIALHHL--------------------------- 640
+LYWA+ L I +NLDGT +Q ++
Sbjct: 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 241
Query: 641 -------KVMTKVVGLTDI-DIFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPA 691
++ + + DI +R+ T+PC +NGGCSHLCL++P K +C CP
Sbjct: 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 301
Query: 692 GNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNE 751
G L E+ +TC + ++ LL+++ +R+ISLD IVL L ++ ++D D
Sbjct: 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
YIYW+D + I R D +G + +V + + IAVD + R +YWTD I V+ +
Sbjct: 362 YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRL 421
Query: 812 DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETE 870
+G K+L +L PR+IV+ +G M W DW +IE A +DG++R V T
Sbjct: 422 NGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE----IPKIERAALDGSDRVVLVNTS 477
Query: 871 VIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ-SHPYTLTVLDYYVYW 929
+ WP+ LA+DY D K+YW D IE + + H + T+L YVYW
Sbjct: 478 LGWPNGLALDY-DEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYW 536
Query: 930 TDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRA--AQNISFPNACGSNNGGCSHLCLRNP 987
TD Q I R +K + V Q+ ++A + N C NGGCSHLCL P
Sbjct: 537 TDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP 596
Query: 988 TNFTCACPTGILLSADRRSC 1007
CACP G L +D ++C
Sbjct: 597 QGLRCACPIGFELISDMKTC 616
Score = 393 bits (1009), Expect = e-122
Identities = 205/629 (32%), Positives = 312/629 (49%), Gaps = 34/629 (5%)
Query: 702 CSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEK 761
+ + LL + +R + + + + L+ A+VD + IYWSD+SE+
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDAT-NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Query: 762 TIERVRFDMTGR-ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLF 820
I+R F+ T + +VV+ L + +A D +G K+YWTD I VS++DG KVLF
Sbjct: 63 AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 122
Query: 821 WLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAI 879
W L +PR+I + G M W DW +IE A MDG++R + +E+ WP+ L +
Sbjct: 123 WQELDQPRAIALDPSSGFMYWTDWG----EVPKIERAGMDGSSRFIIINSEIYWPNGLTL 178
Query: 880 DYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIY 938
DY + KLYW D + I L T R HP+ LT+ + +YWTD I
Sbjct: 179 DY-EEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSIL 237
Query: 939 RANKYDVKDIVEFA-QVDRPWLVRA---AQNISFPNACGSNNGGCSHLCLRNPTN--FTC 992
NKY + + E + P + A + + N CG +NGGCSHLCL +P + C
Sbjct: 238 ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQC 297
Query: 993 ACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDY 1052
ACPTG+ L + ++C E LL R +RRISLDT D + L + +I DY
Sbjct: 298 ACPTGVKLLENGKTCKDGATELLLLARR-TDLRRISLDTPDFTDIVLQLEDIRHAIAIDY 356
Query: 1053 HYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHT 1112
+ IY+ D +R + S + D +DWVA N+Y+ D+
Sbjct: 357 DPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP-DGIAVDWVARNLYWTDTGTDR 415
Query: 1113 INVARSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYR 1171
I V R +G +KIL+ DL EP AI + P G ++++ WG KIE+ LDGS R
Sbjct: 416 IEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWG-----EIPKIERAALDGSDR 470
Query: 1172 TVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQS 1231
VLV L +PN LA+D+ + +++W D+ +IE + G R++++ P+
Sbjct: 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLL 530
Query: 1232 PGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPC 1291
+YWTDW+ S+ + + + +V I D + +KA + + + NPC
Sbjct: 531 GDY-----VYWTDWQRRSIERVHK--RSAEREV--IIDQLPDLMGLKATNVHRVIGSNPC 581
Query: 1292 AQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
A++NGGCSHLC Y+ + G C CP E
Sbjct: 582 AEENGGCSHLCLYRPQ--GLRCACPIGFE 608
Score = 257 bits (657), Expect = 1e-73
Identities = 95/304 (31%), Positives = 159/304 (52%), Gaps = 22/304 (7%)
Query: 147 HCPRGEEGPDERHCPKRVSLSNKKYTAI---IRNLHNVLAVDYHYKKNLLVW-------- 195
R +R+SL +T I + ++ + +A+DY + + W
Sbjct: 314 DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAI 373
Query: 196 ---------NTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANN 246
+ +V + ++VDWV ++WTDT R+E L+G RKILI+ +
Sbjct: 374 RRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISED 433
Query: 247 IDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRL 306
+++PRA+++ P +++WTDWG+ PKIER +DGS+R V++ ++ WPNGL +D++E ++
Sbjct: 434 LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKI 493
Query: 307 YWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGR 366
YW +AK IE + DG+ R+ ++ +PH FG TL D+V+WTDW +SI +K +
Sbjct: 494 YWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAE 553
Query: 367 NIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPK-VCSHICLPNKHRFTCQCPLGLTLSPD 425
+ + L M +++ + HR CSH+CL C CP+G L D
Sbjct: 554 R-EVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISD 612
Query: 426 NKSC 429
K+C
Sbjct: 613 MKTC 616
Score = 176 bits (446), Expect = 3e-46
Identities = 84/311 (27%), Positives = 151/311 (48%), Gaps = 17/311 (5%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
LLY +R +R + T+ + D+ +S LIY++D+ ++ +
Sbjct: 11 LLLYANR-RDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 68
Query: 1074 MSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLME 1132
+ + ++ + + D DW+ +Y+ DS+ + I V+ DG +K+L +L +
Sbjct: 69 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 128
Query: 1133 PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192
P AIA+ P G ++++ WG KIE+ +DGS R +++ ++ +PN L +D++++
Sbjct: 129 PRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 183
Query: 1193 RLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252
+L+WAD+ I + G +R+ V+ P+ ++ LYWTDW S++
Sbjct: 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI-----LYWTDWSTHSIL- 237
Query: 1253 AREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTW-NPCAQDNGGCSHLCFYKGRTKGY 1311
TG+ + I S+ ++I A S +Q NPC DNGGCSHLC Y
Sbjct: 238 -ACNKYTGE-GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY 295
Query: 1312 VCGCPDDLEPN 1322
C CP ++
Sbjct: 296 QCACPTGVKLL 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 446 bits (1149), Expect = e-142
Identities = 184/610 (30%), Positives = 296/610 (48%), Gaps = 68/610 (11%)
Query: 163 RVSLSNKKYTAII--RNLHNVLAVDYHYKKNLLVW-----------------NTHIVHTG 203
R+SL I + A+D+ N + W H+V G
Sbjct: 19 RISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG 78
Query: 204 MQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVF 263
+ ++VDW+ ++W DT R+E LDG++R++L+ ++D PRA+ + P + F++
Sbjct: 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 138
Query: 264 WTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDG 323
WT+WG PKI+R MDGS R ++ N+ NGLTID+ + RLYWT+ + IESS++ G
Sbjct: 139 WTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG 197
Query: 324 SRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRS 383
R +VI LPHPFG+T Y+D+++WTDW +SI ANK +G+N + L + M+I
Sbjct: 198 LNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 384 YHPHRQPNYQS-HCAPKVCSHICLPN-KHRFTCQCPLGLTLSPDNKSCSESPEELLIYAR 441
+H RQ + + CSH+CL F C CP +L+ DN++CS LL +
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316
Query: 442 QKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQ 501
R+ + + + +LP+ ++++V AI ++ + LYW D I +A +G+
Sbjct: 317 SAINRMV--IDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQG 374
Query: 502 YNVIRHN------TKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEP 555
+ V+ + +P ++ID + +YWT N I V+ LDG ++ P
Sbjct: 375 FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 434
Query: 556 RDIAVNPIGGIMYWCSWG-DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
R + VNP G MY+ + KIE A +DG+ R +L L P LA+D +L+WA
Sbjct: 435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 494
Query: 615 NVGLKTIEFTNLDGTRKQTLIALHHLK--------------------------------- 641
+ L+ IE ++L G + L + L+
Sbjct: 495 DSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRT 554
Query: 642 -VMTKVVGLTDIDIFH--RRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLRED 698
V ++ L+DI + + HPC ++NGGCSH+CL+ RC CP +L +D
Sbjct: 555 KVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQD 614
Query: 699 RRTCSENPSK 708
+C
Sbjct: 615 ELSCGGTKHH 624
Score = 433 bits (1115), Expect = e-137
Identities = 180/622 (28%), Positives = 291/622 (46%), Gaps = 55/622 (8%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
PE L+++R+ D+R L + +P+ VK A+ ++ ++ +YW D+ I+
Sbjct: 5 PEAFLLFSRRADIRRISLE--TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 62
Query: 493 RAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
RA +NG+ +V+ P G+A+DW LYW ++ N IEVS LDG + +L W++L
Sbjct: 63 RAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL 122
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
PR +A++P G MYW WG KI+ A MDGS R L + + GL ID RLY
Sbjct: 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLY 181
Query: 613 WANVGLKTIEFTNLDGTRKQTL---------IALHHLK---------------------- 641
W ++ IE +N+ G ++ + + +
Sbjct: 182 WTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 642 --VMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDR 699
+ + + DI +FH R + C +NG CSHLCL P G C CPA L D
Sbjct: 242 TIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADN 301
Query: 700 RTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDIS 759
RTCS + L SQ I ++ +D + I+LP+ L+ V ++D D ++ +YW D
Sbjct: 302 RTCSAPTTFL-LFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSR 360
Query: 760 EKTIERVRFDMTGRERLVVNDLNRT------ESIAVDAIGRKIYWTDMNAQTIMVSDIDG 813
+ I + + D + +VV+ + +++D R IYWT I V+ +DG
Sbjct: 361 QNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 814 KNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVI 872
++ V+ RPR++VV+ G M + + + +IE A +DGT R V F + +
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQE---RSPKIERAALDGTEREVLFFSGLS 477
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTD 931
P LA+D KL+W D+ IE L R + P LTV + ++YW D
Sbjct: 478 KPIALALDSRLG-KLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWID 536
Query: 932 VQHSKIYRANKYDVKDIVEFA-QVDRPWLVRAAQNISFP----NACGSNNGGCSHLCLRN 986
Q I + + + + ++ + + A + ++ + C +NGGCSH+CL
Sbjct: 537 KQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVK 596
Query: 987 PTN-FTCACPTGILLSADRRSC 1007
C+CP ++L D SC
Sbjct: 597 GDGTTRCSCPMHLVLLQDELSC 618
Score = 407 bits (1046), Expect = e-127
Identities = 186/629 (29%), Positives = 282/629 (44%), Gaps = 29/629 (4%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
P FLL S+ IR+ISL+ + +PL +K +++D D + IYW+DIS KTI R
Sbjct: 5 PEAFLLFSRRADIRRISLETN-NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 63
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
+ + E +V L+ E +AVD +G+ +YW D I VS +DG++ +VL W +L
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLD 123
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNP 885
PR++ + G M W +W +I+ A MDG+ R V + L IDY
Sbjct: 124 SPRALALDPAEGFMYWTEWGG----KPKIDRAAMDGSERTTLVPNVGRANGLTIDY-AKR 178
Query: 886 KLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDV 945
+LYW D + IE + + HP+ LT Y+YWTD I RANK
Sbjct: 179 RLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238
Query: 946 KDIVEFA-QVDRPW--LVRAAQNISFPNACGSNNGGCSHLCLRNPTN-FTCACPTGILLS 1001
++ +D LV + S N C S+NG CSHLCL P F C CP L+
Sbjct: 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLN 298
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYF 1061
AD R+C + T L I R+ +D + LP + DY +Y+
Sbjct: 299 ADNRTCSAPTTFLLFSQK--SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 1062 ADMRSGNLRTFDMSDSTRIKPIPLMNDTIR-----DNFVIDWVANNIYYIDSQMHTINVA 1116
D R +R S + + + ID + IY+ + INV
Sbjct: 357 IDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVT 416
Query: 1117 RSDGQHKKILV-NDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLV 1175
R DG+ +++ + P A+ V P +G +++++ + KIE+ LDG+ R VL
Sbjct: 417 RLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ----ERSPKIERAALDGTEREVLF 472
Query: 1176 EEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKA 1235
L+ P LA+D + +LFWADS +RIE D G +R ++ + +
Sbjct: 473 FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENW- 531
Query: 1236 FIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDN 1295
LYW D + + + + R Q ++ ++ +PCAQDN
Sbjct: 532 ----LYWIDKQQQMIEKI-DMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDN 586
Query: 1296 GGCSHLCFYKGRTKGYVCGCPDDLEPNEE 1324
GGCSH+C KG C CP L ++
Sbjct: 587 GGCSHICLVKGDG-TTRCSCPMHLVLLQD 614
Score = 240 bits (612), Expect = 1e-67
Identities = 77/309 (24%), Positives = 136/309 (44%), Gaps = 31/309 (10%)
Query: 158 RHCPKRVSLSNKKYTAI---IRNLHNVLAVDYHYKKNLLVW-----------------NT 197
+ R+ + ++ I I +L NV A+DY L W
Sbjct: 316 KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
Query: 198 HIVHTGMQSVG------SLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPR 251
+V + + S LS+D +++WT A + LDG++ +++ D+PR
Sbjct: 376 TVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPR 435
Query: 252 AVIVHPRDAFVFWTDWG-KTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTE 310
AV+V+P ++++T+ ++PKIER +DG+ R+V+ + P L +D +L+W +
Sbjct: 436 AVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWAD 495
Query: 311 AKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKT 370
+ IESSDL G+ R + + P G+T++E++++W D + I +
Sbjct: 496 SDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTK 555
Query: 371 VHSGLHFPMNIRSYHPHRQPNYQSH---CAPKVCSHICLPN-KHRFTCQCPLGLTLSPDN 426
V + + +I + Y+ H CSHICL C CP+ L L D
Sbjct: 556 VQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDE 615
Query: 427 KSCSESPEE 435
SC +
Sbjct: 616 LSCGGTKHH 624
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 358 bits (920), Expect = e-109
Identities = 135/478 (28%), Positives = 211/478 (44%), Gaps = 67/478 (14%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDG 80
+C+ G CI QCD E+DC+ DE+ C + P++ +C +G CI +C+
Sbjct: 221 QCS-DGNCIHGSRQCDREYDCKDMSDEVGCV--NVTLCEGPNKFKCHSGECITLDKVCNM 277
Query: 81 IPDCSLGEDE--RNCNKTCDAQKEFSCMKLAEPRPTEV------GSNIKYFPLHTVRAPR 132
DC DE + C C + G +
Sbjct: 278 ARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC 337
Query: 133 KDCFSKKYLCDG-----KKHCPRGEEGPDERHCPK-----------------RVSLSNKK 170
+D + LC K C G + K +++L +
Sbjct: 338 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 397
Query: 171 YTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVHTGMQSVGS 209
YT++I NL NV+A+D N + W+ ++ +Q+
Sbjct: 398 YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457
Query: 210 LSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGK 269
L+VDW+H ++WTD+ V D G RK L KPRA++V P F++WTDWG
Sbjct: 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT 517
Query: 270 TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQV 329
KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D++G R+ +
Sbjct: 518 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI 577
Query: 330 IT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPH 387
+ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P ++ +H
Sbjct: 578 LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQL 637
Query: 388 RQPNYQSHCAPKV-----CSHICLPN------KHRFTCQCPLGLTLSPDNKSCSESPE 434
QP + C C ++CLP +FTC CP G+ L+ D +SC E
Sbjct: 638 TQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAE 695
Score = 233 bits (596), Expect = 6e-65
Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 54/376 (14%)
Query: 385 HPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKS-CSESPEELLIYARQK 443
R + P CS +C+ + + CQC G L P K+ + L + +
Sbjct: 327 AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 386
Query: 444 DLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYN 503
++R L E + N+++VVA+ E A++ +YW+D+ I ++ +
Sbjct: 387 EVRKMTLD----RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 442
Query: 504 ----VIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIA 559
VI + + P G+A+DW + +YWT+S + V++ G LF + S+PR I
Sbjct: 443 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV 502
Query: 560 VNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLK 619
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 503 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 562
Query: 620 TIEFTNLDGTRKQTLIALHHL------------------------------------KVM 643
+I +++G ++T++ +
Sbjct: 563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 622
Query: 644 TKVVGLTDIDIFHRRR-SKKTHPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGNL 694
++ D+ +FH+ + + C +NGGC +LCL AP+ C CP G L
Sbjct: 623 ENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 682
Query: 695 LREDRRTCSENPSKFL 710
L D R+C +
Sbjct: 683 LARDMRSCLTEAEAAV 698
Score = 225 bits (574), Expect = 4e-62
Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 29/367 (7%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISL 723
++ CS LC+ L + + +L + ++R+++L
Sbjct: 334 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 393
Query: 724 DVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVN 779
D R + L+ V ++D + + IYWSD+S++ I + D ++ + ++
Sbjct: 394 D---RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 450
Query: 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLM 839
D+ + +AVD I IYWTD T+ V+D G K LF +PR+IVV G M
Sbjct: 451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFM 510
Query: 840 VWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE 898
W DW +I+ ++G + + WP+ + +D +LYWVD+ H+I
Sbjct: 511 YWTDWGT----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSIS 565
Query: 899 YKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-QV 954
+ G K + +HP++L V + V+WTD+ + I+ AN+ D+ A +
Sbjct: 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL 625
Query: 955 DRPWLVRAAQNIS---FPNACGS---NNGGCSHLCLRNP------TNFTCACPTGILLSA 1002
P + ++ N C +NGGC +LCL P FTCACP G+LL+
Sbjct: 626 LSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 685
Query: 1003 DRRSCFS 1009
D RSC +
Sbjct: 686 DMRSCLT 692
Score = 206 bits (525), Expect = 1e-55
Identities = 87/365 (23%), Positives = 155/365 (42%), Gaps = 34/365 (9%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDT 1031
+ CS LC+ + C C G L ++C + L+ + +R+++LD
Sbjct: 336 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 395
Query: 1032 ADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMND 1088
++ + P + + D + N IY++D+ + + + + + +
Sbjct: 396 SEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 452
Query: 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFY 1147
D +DW+ +NIY+ DS + T++VA + G +K L +P AI V P G +++
Sbjct: 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYW 512
Query: 1148 SHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYC 1207
+ WG KI+K L+G LV E++ +PN + +D RL+W DS I
Sbjct: 513 TDWG---TPA--KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 567
Query: 1208 DFFGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWD 1263
D G +RK ++ P+ L+V + +++WTD ++ TG D
Sbjct: 568 DVNGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDIINEAIF--SANRLTGS-D 617
Query: 1264 VHLIRSNQEDFLNIKAISASKQLTW-NPC---AQDNGGCSHLCF----YKGRTKGYVCGC 1315
V+L+ N ++ Q N C NGGC +LC + + C C
Sbjct: 618 VNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCAC 677
Query: 1316 PDDLE 1320
PD +
Sbjct: 678 PDGML 682
Score = 153 bits (387), Expect = 2e-38
Identities = 76/401 (18%), Positives = 134/401 (33%), Gaps = 68/401 (16%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTW 76
++ +G CI + W+CD DC+ DE C C PDE +C+ G+CI +
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA----VATCRPDEFQCSDGNCIHGSR 232
Query: 77 LCDGIPDCSLGEDERNCN--KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKD 134
CD DC DE C C+ +F C +
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKC-------------------------HSGE 267
Query: 135 CFSKKYLCDGKKHCPRGEEGP--------------------------DERHCPKRVSLSN 168
C + +C+ + C + P E CP L
Sbjct: 268 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 327
Query: 169 KKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARR 228
++ I + + + + V + T
Sbjct: 328 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 387
Query: 229 VEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSN----RK 284
V LD LI N + A+ ++W+D I ++D ++
Sbjct: 388 VRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLS-QRMICSTQLDRAHGVSSYD 445
Query: 285 VILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITL-- 342
+++ +I P+GL +D+ +YWT++ + +D G +R+ + + P I +
Sbjct: 446 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 343 YEDFVFWTDWHTKS-ISSANKYTGRNIKT-VHSGLHFPMNI 381
F++WTDW T + I G +I + V + +P I
Sbjct: 506 VHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENIQWPNGI 545
Score = 108 bits (271), Expect = 3e-24
Identities = 42/144 (29%), Positives = 52/144 (36%), Gaps = 32/144 (22%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWL 77
+ R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++
Sbjct: 51 DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFV 106
Query: 78 CDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137
CD DC G DE +C F C C
Sbjct: 107 CDSDRDCLDGSDEASCPVLTCGPASFQC-------------------------NSSTCIP 141
Query: 138 KKYLCDGKKHCPRGEEGPDERHCP 161
+ + CD C G DE
Sbjct: 142 QLWACDNDPDCEDGS---DEWPQR 162
Score = 101 bits (251), Expect = 8e-22
Identities = 38/142 (26%), Positives = 52/142 (36%), Gaps = 32/142 (22%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLCDGI 81
+ G CI +W CD +C+ G DE + C + C CI + W CDG
Sbjct: 14 QDGKCISYKWVCDGSAECQDGSDESQET--CLSVTCKSGDFSCGGRVNRCIPQFWRCDGQ 71
Query: 82 PDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYL 141
DC G DE+ C +Q EF C C S++++
Sbjct: 72 VDCDNGSDEQGCPPKTCSQDEFRC-------------------------HDGKCISRQFV 106
Query: 142 CDGKKHCPRGEEGPDERHCPKR 163
CD + C G DE CP
Sbjct: 107 CDSDRDCLDGS---DEASCPVL 125
Score = 97.6 bits (242), Expect = 1e-20
Identities = 38/162 (23%), Positives = 51/162 (31%), Gaps = 31/162 (19%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 96 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 151
Query: 84 CSLGEDERNCNKTCDAQ----------KEFSCM--------------KLAEPRPTEVGSN 119
C G DE EF C+ + + E
Sbjct: 152 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 211
Query: 120 IKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCP 161
+ + +C CD + C DE C
Sbjct: 212 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMS---DEVGCV 250
Score = 77.2 bits (189), Expect = 2e-14
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 30/113 (26%)
Query: 54 SPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC---NKTCDAQKEFSCMKLAE 110
+ +C +E +C G CI W+CDG +C G DE + TC + +FSC
Sbjct: 1 AVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKS-GDFSC----- 54
Query: 111 PRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKR 163
C + + CDG+ C G DE+ CP +
Sbjct: 55 ------------------GGRVNRCIPQFWRCDGQVDCDNGS---DEQGCPPK 86
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 354 bits (909), Expect = e-106
Identities = 126/528 (23%), Positives = 203/528 (38%), Gaps = 57/528 (10%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDE--MKCPQASPPKKCSPDEHRCTT----------- 68
+G CI C+ DC DE +C H C
Sbjct: 280 KCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPD 339
Query: 69 GHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC---MKLAEPRPTEVGSNIKYFPL 125
G ++ C+ I +C + + + C +L +
Sbjct: 340 GFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLF 399
Query: 126 HTVRAPRK----DCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRNLHNV 181
T R + D L ++ + + + H V
Sbjct: 400 FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 459
Query: 182 LAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKI 241
++ +Q+ L+VDW+H ++WTD+ V D G RK
Sbjct: 460 ------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 507
Query: 242 LIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDF 301
L N KPRA++V P F++WTDWG KI++ ++G + ++TENI WPNG+T+D
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 567
Query: 302 EEDRLYWTEAKHHFIESSDLDGSRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISS 359
RLYW ++K H I S D++G R+ ++ K L HPF + ++ED VFWTD ++I S
Sbjct: 568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 627
Query: 360 ANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV-----CSHICLP------N 408
AN+ TG ++ + L P ++ +H QP + C C ++CLP +
Sbjct: 628 ANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPH 687
Query: 409 KHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKS 468
+FTC CP G+ L+ D +SC E + +R+ + T T +
Sbjct: 688 SPKFTCACPDGMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPV---- 743
Query: 469 VVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI-RHNTKKPAGV 515
L A + ++ +V R N KKP+ V
Sbjct: 744 -------PDTSRLPGATPGLTTVEIVTMSHQALGDVAGRGNEKKPSSV 784
Score = 245 bits (627), Expect = 3e-68
Identities = 98/432 (22%), Positives = 176/432 (40%), Gaps = 63/432 (14%)
Query: 385 HPHRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQK 443
R+ C P CS +C+ + + CQC G L P K+C ++
Sbjct: 344 VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN- 402
Query: 444 DLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING----T 499
R E + N+++VVA+ E A++ +YW+D+ I ++ +
Sbjct: 403 --RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 460
Query: 500 FQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIA 559
VI + + P G+A+DW + +YWT+S + V++ G LF +N S+PR I
Sbjct: 461 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520
Query: 560 VNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLK 619
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH 580
Query: 620 TIEFTNLDGTRKQTLIALHHL------------------------------------KVM 643
+I +++G ++T++ +
Sbjct: 581 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA 640
Query: 644 TKVVGLTDIDIFHR-RRSKKTHPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGNL 694
++ D+ +FH + + + C +NGGC +LCL AP+ C CP G L
Sbjct: 641 ENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGML 700
Query: 695 LREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIY 754
L D R+C + +Q ++ + R + + +
Sbjct: 701 LARDMRSCLTEAE-AAVATQETSTVRLKVSSTAVRTQHTTTRPVPDTSR---------LP 750
Query: 755 WSDISEKTIERV 766
+ T+E V
Sbjct: 751 GATPGLTTVEIV 762
Score = 240 bits (612), Expect = 2e-66
Identities = 112/401 (27%), Positives = 183/401 (45%), Gaps = 32/401 (7%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT-CSENPSKFLLVSQTDKIRQIS 722
++ CS LC + + G +C C G L + + +L + ++R+++
Sbjct: 352 IDECQDPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMT 410
Query: 723 LDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVV 778
LD ++ L+ V ++D + + IYWSD+S++ I + D ++ + ++
Sbjct: 411 LDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 467
Query: 779 NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGL 838
D+ + +AVD I IYWTD T+ V+D G K LF N +PR+IVV G
Sbjct: 468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 527
Query: 839 MVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
M W DW +I+ ++G + + WP+ + +D +LYWVD+ H+I
Sbjct: 528 MYWTDWGT----PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSI 582
Query: 898 EYKTLATGRAK---RAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-Q 953
+ G K +HP++L V + V+WTD+ + I+ AN+ D+ A
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 642
Query: 954 VDRPWLVRAAQNISFP---NACGS---NNGGCSHLCLRNPTN------FTCACPTGILLS 1001
+ P + N++ P N C +NGGC +LCL P FTCACP G+LL+
Sbjct: 643 LLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLA 702
Query: 1002 ADRRSCFSRTREFLLYTSRFGVIRRISLDTADLLPVTLPFP 1042
D RSC + E + T +R TA T P
Sbjct: 703 RDMRSCLTEA-EAAVATQETSTVRLKVSSTAVRTQHTTTRP 742
Score = 210 bits (534), Expect = 2e-56
Identities = 87/363 (23%), Positives = 157/363 (43%), Gaps = 34/363 (9%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ CS LC+ + C C G L ++C + L+ + +R+++LD ++
Sbjct: 356 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMNDTI 1090
+ P + + D + N IY++D+ + + + + + +
Sbjct: 416 YTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472
Query: 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSH 1149
D +DW+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++
Sbjct: 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 532
Query: 1150 WGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
WG KI+K L+G LV E++ +PN + +D RL+W DS I D
Sbjct: 533 WG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 587
Query: 1210 FGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265
G +RK ++ P+ L+V + +++WTD ++ TG DV+
Sbjct: 588 NGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDIINEAIF--SANRLTGS-DVN 637
Query: 1266 LIRSNQEDFLNIKAISASKQLTW-NPCAQ---DNGGCSHLCF----YKGRTKGYVCGCPD 1317
L+ N ++ Q N C + NGGC +LC + + C CPD
Sbjct: 638 LLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 697
Query: 1318 DLE 1320
+
Sbjct: 698 GML 700
Score = 155 bits (393), Expect = 8e-39
Identities = 81/417 (19%), Positives = 138/417 (33%), Gaps = 60/417 (14%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP------QASPPKKCSPDEHRCTTGHCILK 74
+CN + CIP W CDN+ DCE G DE CS E C +G CI
Sbjct: 151 QCN-SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 209
Query: 75 TWLCDGIPDCSLGEDERNCNKTCDAQKEFSCM-----------------KLAEPRPTEVG 117
+W CDG PDC DE NC EF C K V
Sbjct: 210 SWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 269
Query: 118 SNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRN 177
+ P + + +C + +C+ + C + P + +N + + +
Sbjct: 270 VTLCEGP-NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 328
Query: 178 LHNVLAVDYHYKKNLL-------------------------VWNTHIVHTGMQSVGSLSV 212
L L+ G Q
Sbjct: 329 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 388
Query: 213 DWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
+ + R ++ + N+ A+ ++W+D
Sbjct: 389 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS-QRM 447
Query: 273 IERVEMDG----SNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQ 328
I ++D S+ +++ +I P+GL +D+ +YWT++ + +D G +R+
Sbjct: 448 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 507
Query: 329 VITKGLPHPFGITL--YEDFVFWTDWHTKS-ISSANKYTGRNIKT-VHSGLHFPMNI 381
+ + P I + F++WTDW T + I G +I + V + +P I
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG-LNGVDIYSLVTENIQWPNGI 563
Score = 111 bits (279), Expect = 4e-25
Identities = 43/146 (29%), Positives = 53/146 (36%), Gaps = 32/146 (21%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWL 77
+ R CIP W+CD + DC+ G DE CP PK CS DE RC G CI + ++
Sbjct: 69 DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP----PKTCSQDEFRCHDGKCISRQFV 124
Query: 78 CDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFS 137
CD DC G DE +C F C C
Sbjct: 125 CDSDRDCLDGSDEASCPVLTCGPASFQC-------------------------NSSTCIP 159
Query: 138 KKYLCDGKKHCPRGEEGPDERHCPKR 163
+ + CD C G DE R
Sbjct: 160 QLWACDNDPDCEDGS---DEWPQRCR 182
Score = 101 bits (253), Expect = 6e-22
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 33/145 (22%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRC--TTGHCILKTWLC 78
+C G CI +W CD +C+ G DE + C + C CI + W C
Sbjct: 30 QCQ-DGKCISYKWVCDGSAECQDGSDESQET--CLSVTCKSGDFSCGGRVNRCIPQFWRC 86
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSK 138
DG DC G DE+ C +Q EF C C S+
Sbjct: 87 DGQVDCDNGSDEQGCPPKTCSQDEFRC-------------------------HDGKCISR 121
Query: 139 KYLCDGKKHCPRGEEGPDERHCPKR 163
+++CD + C +G DE CP
Sbjct: 122 QFVCDSDRDCL---DGSDEASCPVL 143
Score = 99 bits (248), Expect = 2e-21
Identities = 35/141 (24%), Positives = 47/141 (33%), Gaps = 22/141 (15%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 169
Query: 84 CSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCD 143
C G DE + + +C + CD
Sbjct: 170 CEDGSDEWPQRCRGLYVFQGDSSPCSA---------------FEFHCLSGECIHSSWRCD 214
Query: 144 GKKHCPRGEEGPDERHCPKRV 164
G C + DE +C
Sbjct: 215 GGPDCK---DKSDEENCAVAT 232
Score = 80.7 bits (198), Expect = 2e-15
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 37/135 (27%)
Query: 32 QWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDER 91
+ + + +C +E +C G CI W+CDG +C G DE
Sbjct: 4 KLRWTVALLLA-------AAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDES 56
Query: 92 NC---NKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHC 148
+ TC + +FSC C + + CDG+ C
Sbjct: 57 QETCLSVTCKS-GDFSC-----------------------GGRVNRCIPQFWRCDGQVDC 92
Query: 149 PRGEEGPDERHCPKR 163
G DE+ CP +
Sbjct: 93 D---NGSDEQGCPPK 104
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 301 bits (771), Expect = 7e-92
Identities = 146/400 (36%), Positives = 223/400 (55%), Gaps = 45/400 (11%)
Query: 62 DEHRCTT--GHCILKTWLCDGIP-----DCSLGEDERNCNKTCDAQKEFSCMKLAEPRPT 114
E C G C C I C G +TC E +
Sbjct: 2 GEENCNVNNGGC---AQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA---------- 48
Query: 115 EVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGP----DERHCPKRVSLSNKK 170
++ A + C + L ++ C P R ++V +
Sbjct: 49 -EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE 107
Query: 171 YTAIIRNLHNVLAVDYHYKKNLLVWN-----------------THIVHTGMQSVGSLSVD 213
YT ++ NL N +A+D+H+++ L+ W+ +V TG++S G L+VD
Sbjct: 108 YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
WVHD ++WTD+ R+E +LDG +RK+L+ +++KPRA+ +HP + ++WTDWG TP+I
Sbjct: 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI 227
Query: 274 ERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
E MDGS R++I ++FWPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI++G
Sbjct: 228 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG 287
Query: 334 LPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQ 393
LPHPF IT++ED ++WTDWHTKSI+SANK+TG+N + + + LHFPM+I + HP RQP +
Sbjct: 288 LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGK 347
Query: 394 SHCAPK--VCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
+ C C+H+CLP+ +TC CP G ++ +C++
Sbjct: 348 NRCGDNNGGCTHLCLPSGQNYTCACPTGFRKI-NSHACAQ 386
Score = 251 bits (641), Expect = 4e-74
Identities = 113/356 (31%), Positives = 170/356 (47%), Gaps = 16/356 (4%)
Query: 658 RRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDK 717
R + + C G CS C + +C C AG LR DRR+C + +L+
Sbjct: 39 RTCQDVNEC-AEEGYCSQGCTNSEG-AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRI 96
Query: 718 IRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLV 777
+ L Y + L L+ ++D + E ++WSD++ I R + + E +V
Sbjct: 97 DIRQVLPHRSEYTL--LLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154
Query: 778 VNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLG 837
L +AVD + K+YWTD I V+++DG + KVL W +L +PR+I +H G
Sbjct: 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214
Query: 838 LMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHT 896
+ W DW RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H
Sbjct: 215 TIYWTDWG----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHV 269
Query: 897 IEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA--- 952
IE L + R HP+ +TV + +YWTD I ANK+ K+
Sbjct: 270 IERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL 329
Query: 953 -QVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ + + N CG NNGGC+HLCL + N+TCACPTG + +C
Sbjct: 330 HFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRK-INSHAC 384
Score = 240 bits (612), Expect = 3e-70
Identities = 109/354 (30%), Positives = 165/354 (46%), Gaps = 41/354 (11%)
Query: 387 HRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDL 445
R + CA CS C ++ F C C G L PD +SC
Sbjct: 38 GRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP---EPVLLFAN 94
Query: 446 RISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI 505
RI E L + N+++ +A+ + + ++W+DV I RA++NG+ V+
Sbjct: 95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154
Query: 506 RHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGG 565
+ P G+A+DW +KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G
Sbjct: 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214
Query: 566 IMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTN 625
+YW WG+ +IE + MDGS R I+A L P GL ID R+YW + IE N
Sbjct: 215 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274
Query: 626 LDGTRKQTLIA--LHHLK--------------------------------VMTKVVGLTD 651
LDG+ ++ +I+ L H + K+ D
Sbjct: 275 LDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 334
Query: 652 IDIFHRRRSKKT-HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
I H +R + C +NNGGC+HLCL + + C CP G + C++
Sbjct: 335 IHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ-NYTCACPTGFRK-INSHACAQ 386
Score = 220 bits (561), Expect = 2e-63
Identities = 105/360 (29%), Positives = 178/360 (49%), Gaps = 27/360 (7%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ G CS C + F C C G L DRRSC + E +L + IR++ ++
Sbjct: 48 AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSE 107
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDN 1093
TL ++I D+H+ + L++++D+ + +++ S + + ++
Sbjct: 108 ---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP-GG 163
Query: 1094 FVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSHWGL 1152
+DWV + +Y+ DS I VA DG H+K+L+ L +P AIA++P G ++++ WG
Sbjct: 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG- 222
Query: 1153 YDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGR 1212
N+P +IE +DGS R ++ + L +PN L ID+ RR++W D+ + IE + G
Sbjct: 223 --NTP--RIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278
Query: 1213 SRKIVISKVA--PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIRSN 1270
RK VIS+ P+ ++V + LYWTDW S+ TG+ + +IR+
Sbjct: 279 HRKAVISQGLPHPFAITVFED-------SLYWTDWHTKSIN--SANKFTGK-NQEIIRNK 328
Query: 1271 QEDFLNIKAISASKQLT-WNPCAQDNGGCSHLCFYKGRTKGYVCGCPDD--LEPNEECFE 1327
++I + +Q N C +NGGC+HLC G+ Y C CP + C +
Sbjct: 329 LHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ--NYTCACPTGFRKINSHACAQ 386
Score = 37.4 bits (86), Expect = 0.026
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
C +NGGC+ C C C
Sbjct: 4 ENCNVNNGGCAQKCQMIRG--AVQCTCHT 30
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 290 bits (743), Expect = 6e-89
Identities = 102/301 (33%), Positives = 160/301 (53%), Gaps = 34/301 (11%)
Query: 163 RVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWN---------------------THIVH 201
+++L +YT++I NL NV+A+D N + W+ ++
Sbjct: 14 KMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS 73
Query: 202 TGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
+Q+ L+VDW+H ++WTD+ V D G RK L N KPRA++V P F
Sbjct: 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGF 133
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
++WTDWG KI++ ++G + ++TENI WPNG+T+D RLYW ++K H I S D+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 193
Query: 322 DGSRRQQVIT--KGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPM 379
+G R+ ++ K L HPF + ++ED VFWTD ++I SAN+ TG ++ + L P
Sbjct: 194 NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE 253
Query: 380 NIRSYHPHRQPNYQSHCAPKV-----CSHICLPNKH------RFTCQCPLGLTLSPDNKS 428
++ +H QP + C C ++CLP +FTC CP G+ L+ D +S
Sbjct: 254 DMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS 313
Query: 429 C 429
C
Sbjct: 314 C 314
Score = 244 bits (624), Expect = 1e-72
Identities = 98/322 (30%), Positives = 161/322 (50%), Gaps = 29/322 (9%)
Query: 709 FLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRF 768
+L + ++R+++LD R + L+ V ++D + + IYWSD+S++ I +
Sbjct: 3 YLFFTNRHEVRKMTLD---RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 769 D----MTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
D ++ + ++ D+ + +AVD I IYWTD T+ V+D G K LF N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSD 883
+PR+IVV G M W DW T +I+ ++G + + WP+ + +D
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-L 174
Query: 884 NPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SHPYTLTVLDYYVYWTDVQHSKIYRA 940
+ +LYWVD+ H+I + G K + +HP++L V + V+WTD+ + I+ A
Sbjct: 175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA 234
Query: 941 NKYDVKDIVEFA-QVDRPWLVRAAQNISFP---NACGS---NNGGCSHLCLRNP------ 987
N+ D+ A + P + N++ P N C +NGGC +LCL P
Sbjct: 235 NRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHS 294
Query: 988 TNFTCACPTGILLSADRRSCFS 1009
FTCACP G+LL+ D RSC +
Sbjct: 295 PKFTCACPDGMLLARDMRSCLT 316
Score = 219 bits (559), Expect = 6e-64
Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 53/315 (16%)
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHI 496
L + + ++R L T + N+++VVA+ E A++ +YW+D+ I +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 497 NG----TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL 552
+ + VI + + P G+A+DW + +YWT+S + V++ G LF +N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLY 612
S+PR I V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLY
Sbjct: 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLY 179
Query: 613 WANVGLKTIEFTNLDGTRKQTLIALHHLK------------------------------- 641
W + L +I +++G ++T++
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239
Query: 642 -----VMTKVVGLTDIDIFHR-RRSKKTHPCNE---NNGGCSHLCLIAPK-----DGIRC 687
+ ++ D+ +FH + + + C +NGGC +LCL AP+ C
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC 299
Query: 688 VCPAGNLLREDRRTC 702
CP G LL D R+C
Sbjct: 300 ACPDGMLLARDMRSC 314
Score = 191 bits (487), Expect = 3e-54
Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 35/323 (10%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
+L +T+R +R+++LD ++ T P + + D + N IY++D+ + +
Sbjct: 3 YLFFTNR-HEVRKMTLDRSE---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 1074 M---SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-D 1129
+ + + + D +DW+ +NIY+ DS + T++VA + G +K L +
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
+P AI V P G ++++ WG KI+K L+G LV E++ +PN + +D
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDW 1245
RL+W DS I D G +RK ++ P+ L+V + +++WTD
Sbjct: 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-------KVFWTDI 226
Query: 1246 EAMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTW-NPCAQ---DNGGCSHL 1301
++ TG DV+L+ N ++ Q N C + NGGC +L
Sbjct: 227 INEAIF--SANRLTGS-DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYL 283
Query: 1302 CF----YKGRTKGYVCGCPDDLE 1320
C + + C CPD +
Sbjct: 284 CLPAPQINPHSPKFTCACPDGML 306
Score = 92.4 bits (229), Expect = 2e-20
Identities = 49/313 (15%), Positives = 104/313 (33%), Gaps = 62/313 (19%)
Query: 572 WGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRK 631
+ + H++ +D S L + L+N L ++ ++R+YW+++ + I T LD
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 632 QTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLI-APKDGIRCVCP 690
+ + + GL +D H ++ + +
Sbjct: 65 VSSYDTVISRDIQAPDGLA-VDWIHS-----------------NIYWTDSVLGTVSVADT 106
Query: 691 AGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKN 750
G R+T L K R I +D +
Sbjct: 107 KGV----KRKT--------LFRENGSKPRAIVVDPVHG---------------------- 132
Query: 751 EYIYWSDISEK-TIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVS 809
++YW+D I++ + LV ++ I +D + ++YW D +I
Sbjct: 133 -FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 191
Query: 810 DIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAH-MDGTNRAVFE 868
D++G N K + + + W D N I A+ + G++ +
Sbjct: 192 DVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGSDVNLLA 246
Query: 869 TEVIWPSCLAIDY 881
++ P + + +
Sbjct: 247 ENLLSPEDMVLFH 259
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 290 bits (742), Expect = 8e-89
Identities = 114/296 (38%), Positives = 175/296 (59%), Gaps = 24/296 (8%)
Query: 163 RVSLSN--KKYTAIIRNLHNVLAVDYHYKKNLLVW------------------NTHIVHT 202
V +N + T ++ L + AVD+ + L+ W ++V +
Sbjct: 17 LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS 76
Query: 203 GMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFV 262
G+ S L+ DW+ + ++WTD+ R+E +LDG RK+L +D+PRA+ + P F+
Sbjct: 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFM 136
Query: 263 FWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLD 322
+WTDWG+ PKIER MDGS+R +I+ I+WPNGLT+D+EE +LYW +AK +FI S+LD
Sbjct: 137 YWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196
Query: 323 GSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIR 382
G+ RQ V+ LPHPF +TL+ED ++WTDW T SI + NKYTG ++ +HS + PM+I
Sbjct: 197 GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIH 256
Query: 383 SYHPHRQPNYQSH--CAPKVCSHICLPNKHR--FTCQCPLGLTLSPDNKSCSESPE 434
++ RQPN + CSH+CL + + + C CP G+ L + K+C +
Sbjct: 257 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGNS 312
Score = 244 bits (625), Expect = 8e-73
Identities = 108/311 (34%), Positives = 159/311 (51%), Gaps = 15/311 (4%)
Query: 706 PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
+ LL + +R + + + + L+ A+VD + IYWSD+SE+ I+R
Sbjct: 3 SAPLLLYANRRDLRLVDATNG-KENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKR 61
Query: 766 VRFDMTGR-ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL 824
F+ T + +VV+ L + +A D +G K+YWTD I VS++DG KVLFW L
Sbjct: 62 TEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL 121
Query: 825 YRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSD 883
+PR+I + G M W DW +IE A MDG++R + +E+ WP+ L +DY +
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGE----VPKIERAGMDGSSRFIIINSEIYWPNGLTLDY-E 176
Query: 884 NPKLYWVDTSKHTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANK 942
KLYW D + I L T R HP+ LT+ + +YWTD I NK
Sbjct: 177 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNK 236
Query: 943 YDVKDIVEFA-QVDRPWLVRAAQNISFPNA---CGSNNGGCSHLCLRNPTN--FTCACPT 996
Y + + E + P + A PNA CG +NGGCSHLCL +P + CACPT
Sbjct: 237 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 296
Query: 997 GILLSADRRSC 1007
G+ L + ++C
Sbjct: 297 GVKLLENGKTC 307
Score = 226 bits (576), Expect = 3e-66
Identities = 114/312 (36%), Positives = 160/312 (51%), Gaps = 39/312 (12%)
Query: 433 PEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEIN 492
LL+YA ++DLR+ T + + V ++ A+ + ++ +YW+DV I
Sbjct: 3 SAPLLLYANRRDLRLVDAT--NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK 60
Query: 493 RAHINGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQN 551
R N T NV+ P G+A DW KLYWT+SE N IEVSNLDG+ +LFWQ
Sbjct: 61 RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE 120
Query: 552 LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
L +PR IA++P G MYW WG++ KIE AGMDGS R I+ + + P GL +D E +L
Sbjct: 121 LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 612 YWANVGLKTIEFTNLDGTRKQTLIA--LHHLKVMT--------------------KVVG- 648
YWA+ L I +NLDGT +Q ++ L H +T K G
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240
Query: 649 ------------LTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAP-KDGIRCVCPAGNLL 695
+ +R+ T+PC +NGGCSHLCL++P K +C CP G L
Sbjct: 241 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKL 300
Query: 696 REDRRTCSENPS 707
E+ +TC + S
Sbjct: 301 LENGKTCKDGNS 312
Score = 194 bits (494), Expect = 3e-55
Identities = 78/308 (25%), Positives = 142/308 (46%), Gaps = 15/308 (4%)
Query: 1014 FLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFD 1073
LLY +R +R + T+ + D+ +S LIY++D+ ++ +
Sbjct: 6 LLLYANRRD-LRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE 63
Query: 1074 MSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLME 1132
+ + ++ + + D DW+ +Y+ DS+ + I V+ DG +K+L +L +
Sbjct: 64 FNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQ 123
Query: 1133 PLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQR 1192
P AIA+ P G ++++ WG KIE+ +DGS R +++ ++ +PN L +D++++
Sbjct: 124 PRAIALDPSSGFMYWTDWG-----EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178
Query: 1193 RLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVI 1252
+L+WAD+ I + G +R+ V+ P+ ++ LYWTDW S++
Sbjct: 179 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDI-----LYWTDWSTHSIL- 232
Query: 1253 AREKSDTGQWDVHLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYV 1312
TG+ + + NPC DNGGCSHLC Y
Sbjct: 233 -ACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQ 291
Query: 1313 CGCPDDLE 1320
C CP ++
Sbjct: 292 CACPTGVK 299
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 285 bits (730), Expect = 4e-86
Identities = 106/394 (26%), Positives = 180/394 (45%), Gaps = 25/394 (6%)
Query: 50 CPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQK-EFSCMKL 108
C +C C G ++ C+ I +C +D C++ C + + C
Sbjct: 14 CNDLKIGYECL-----CPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLEGGYKCQCE 65
Query: 109 AEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSN 168
+ K +K D ++ + V+ +
Sbjct: 66 EGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 125
Query: 169 KKYTAIIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARR 228
++ + + + +D + + ++ +Q+ L+VDW+H ++WTD+
Sbjct: 126 IYWSDLSQRMICSTQLDRA---HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGT 182
Query: 229 VEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILT 288
V D G RK L N KPRA++V P F++WTDWG KI++ ++G + ++T
Sbjct: 183 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242
Query: 289 ENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVIT--KGLPHPFGITLYEDF 346
ENI WPNG+T+D RLYW ++K H I S D++G R+ ++ K L HPF + ++ED
Sbjct: 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 302
Query: 347 VFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKV-----C 401
VFWTD ++I SAN+ TG ++ + L P ++ +H QP + C C
Sbjct: 303 VFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGC 362
Query: 402 SHICLP------NKHRFTCQCPLGLTLSPDNKSC 429
++CLP + +FTC CP G+ L+ D +SC
Sbjct: 363 QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396
Score = 233 bits (596), Expect = 7e-68
Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 53/369 (14%)
Query: 384 YHPHRQPNYQSHCA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQ 442
R+ C P CS +C+ + + CQC G L P K+C ++
Sbjct: 31 LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTN 90
Query: 443 KDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHING---- 498
R E + N+++VVA+ E A++ +YW+D+ I ++
Sbjct: 91 ---RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147
Query: 499 TFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDI 558
+ VI + + P G+A+DW + +YWT+S + V++ G LF +N S+PR I
Sbjct: 148 SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 207
Query: 559 AVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGL 618
V+P+ G MYW WG KI+ G++G + L +++++ P G+ +DL + RLYW + L
Sbjct: 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267
Query: 619 KTIEFTNLDGTRKQTLIALHHLK------------------------------------V 642
+I +++G ++T++ +
Sbjct: 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 327
Query: 643 MTKVVGLTDIDIFHRRRSKK-THPCNE---NNGGCSHLCLIAPK-----DGIRCVCPAGN 693
++ D+ +FH + + C +NGGC +LCL AP+ C CP G
Sbjct: 328 AENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGM 387
Query: 694 LLREDRRTC 702
LL D R+C
Sbjct: 388 LLARDMRSC 396
Score = 233 bits (595), Expect = 8e-68
Identities = 113/407 (27%), Positives = 179/407 (43%), Gaps = 70/407 (17%)
Query: 664 HPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRR-----TCSEN------------- 705
+ C +NNGGCSH+C G C+CP G L RR C +
Sbjct: 1 NECLDNNGGCSHVCNDLK-IGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 59
Query: 706 ----------------------PSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVAS 743
+L + ++R+++LD ++ L+ V +
Sbjct: 60 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVA 116
Query: 744 VDVDTKNEYIYWSDISEKTIERVRFD----MTGRERLVVNDLNRTESIAVDAIGRKIYWT 799
+D + + IYWSD+S++ I + D ++ + ++ D+ + +AVD I IYWT
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 176
Query: 800 DMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859
D T+ V+D G K LF N +PR+IVV G M W DW T +I+ +
Sbjct: 177 DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG----TPAKIKKGGL 232
Query: 860 DGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---S 915
+G + + WP+ + +D +LYWVD+ H+I + G K + +
Sbjct: 233 NGVDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 291
Query: 916 HPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA-QVDRPWLVRA---AQNISFPNA 971
HP++L V + V+WTD+ + I+ AN+ D+ A + P + N
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNW 351
Query: 972 C---GSNNGGCSHLCLRNPTN------FTCACPTGILLSADRRSCFS 1009
C +NGGC +LCL P FTCACP G+LL+ D RSC +
Sbjct: 352 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 398
Score = 214 bits (545), Expect = 4e-61
Identities = 85/362 (23%), Positives = 153/362 (42%), Gaps = 32/362 (8%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISLDTAD 1033
+ CS LC+ + C C G L ++C + L+ + +R+++LD ++
Sbjct: 44 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 103
Query: 1034 LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM---SDSTRIKPIPLMNDTI 1090
T P + + D + N IY++D+ + + + + + +
Sbjct: 104 ---YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160
Query: 1091 RDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYSH 1149
D +DW+ +NIY+ DS + T++VA + G +K L + +P AI V P G ++++
Sbjct: 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220
Query: 1150 WGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
WG KI+K L+G LV E++ +PN + +D RL+W DS I D
Sbjct: 221 WG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 275
Query: 1210 FGRSRKIVISKVA----PYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVH 1265
G +RK ++ P+ L+V F +++WTD ++ TG
Sbjct: 276 NGGNRKTILEDEKRLAHPFSLAV-------FEDKVFWTDIINEAIF--SANRLTGSDVNL 326
Query: 1266 LIRSNQEDFLNIKAISASKQLTWNPC---AQDNGGCSHLCF----YKGRTKGYVCGCPDD 1318
L + + + ++ N C NGGC +LC + + C CPD
Sbjct: 327 LAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 386
Query: 1319 LE 1320
+
Sbjct: 387 ML 388
Score = 39.4 bits (91), Expect = 0.007
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
N C +NGGCSH+C GY C CPD
Sbjct: 1 NECLDNNGGCSHVCND--LKIGYECLCPD 27
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 273 bits (699), Expect = 2e-82
Identities = 134/321 (41%), Positives = 205/321 (63%), Gaps = 24/321 (7%)
Query: 134 DCFSKKYLCDGKKHCPRGEEGPDE----RHCPKRVSLSNKKYTAIIRNLHNVLAVDYHYK 189
C + L ++ C P R ++V +YT ++ NL N +A+D+H++
Sbjct: 24 WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR 83
Query: 190 KNLLVWN-----------------THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFC 232
+ L+ W+ +V TG++S G L+VDWVHD ++WTD+ R+E
Sbjct: 84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143
Query: 233 DLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIF 292
+LDG +RK+L+ +++KPRA+ +HP + ++WTDWG TP+IE MDGS R++I ++F
Sbjct: 144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 203
Query: 293 WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDW 352
WPNGLTID+ R+YW +AKHH IE ++LDGS R+ VI++GLPHPF IT++ED ++WTDW
Sbjct: 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDW 263
Query: 353 HTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA--PKVCSHICLPNKH 410
HTKSI+SANK+TG+N + + + LHFPM+I + HP RQP ++ C C+H+CLP+
Sbjct: 264 HTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ 323
Query: 411 RFTCQCPLGLTLSPDNKSCSE 431
+TC CP G ++ +C+
Sbjct: 324 NYTCACPTGFRKI-NSHACAL 343
Score = 249 bits (635), Expect = 8e-74
Identities = 116/350 (33%), Positives = 167/350 (47%), Gaps = 17/350 (4%)
Query: 665 PCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC-SENPSKFLLVSQTDKIRQISL 723
C G CS C + +C C AG LR DRR+C + P LL + IRQ+
Sbjct: 3 EC-AEEGYCSQGCTNSE-GAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 724 DVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNR 783
R L L L+ ++D + E ++WSD++ I R + + E +V L
Sbjct: 61 H---RSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 117
Query: 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
+AVD + K+YWTD I V+++DG + KVL W +L +PR+I +H G + W D
Sbjct: 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177
Query: 844 WSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902
W RIE + MDG+ R + +T + WP+ L IDY+ ++YWVD H IE L
Sbjct: 178 WG----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANL 232
Query: 903 -ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFA----QVDRP 957
+ R HP+ +TV + +YWTD I ANK+ K+
Sbjct: 233 DGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDI 292
Query: 958 WLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ + + N CG NNGGC+HLCL + N+TCACPTG
Sbjct: 293 HTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACA 342
Score = 233 bits (596), Expect = 1e-68
Identities = 107/345 (31%), Positives = 161/345 (46%), Gaps = 40/345 (11%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPS 454
CA CS C ++ F C C G L PD +SC E ++ RI
Sbjct: 4 CAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFAN---RIDIRQVLP 60
Query: 455 PTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAG 514
E L + N+++ +A+ + + ++W+DV I RA++NG+ V+ + P G
Sbjct: 61 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG 120
Query: 515 VAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGD 574
+A+DW +KLYWT+S + IEV+NLDG + +L WQ+L +PR IA++P+ G +YW WG+
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 575 LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTL 634
+IE + MDGS R I+A L P GL ID R+YW + IE NLDG+ ++ +
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV 240
Query: 635 IALHHLK----------------------------------VMTKVVGLTDIDIFHRRRS 660
I+ + K+ DI H +R
Sbjct: 241 ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQ 300
Query: 661 KK-THPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
+ C +NNGGC+HLCL + + C CP G E
Sbjct: 301 PAGKNRCGDNNGGCTHLCLPSGQ-NYTCACPTGFRKINSHACALE 344
Score = 210 bits (536), Expect = 1e-60
Identities = 100/352 (28%), Positives = 163/352 (46%), Gaps = 20/352 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFGVIRRISL 1029
N C + G CS C + F C C G L DRRSC + E +L + IR++
Sbjct: 2 NEC-AEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 60
Query: 1030 DTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDT 1089
++ TL ++I D+H+ + L++++D+ + ++ + + ++ +
Sbjct: 61 HRSE---YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL-NGSNVEEVVSTGLE 116
Query: 1090 IRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYPRRGLLFYS 1148
+DWV + +Y+ DS I VA DG H+K+L+ L +P AIA++P G ++++
Sbjct: 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT 176
Query: 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCD 1208
WG T +IE +DGS R ++ + L +PN L ID+ RR++W D+ + IE +
Sbjct: 177 DWG-----NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 231
Query: 1209 FFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWTDWEAMSVVIAREKSDTGQWDVHLIR 1268
G RK VIS+ P+ ++ LYWTDW S I TG+ +
Sbjct: 232 LDGSHRKAVISQGLPHPFAITVFEDS-----LYWTDWHTKS--INSANKFTGKNQEIIRN 284
Query: 1269 SNQEDFLNIKAISASKQLTWNPCAQDNGGCSHLCFYKGRTKGYVCGCPDDLE 1320
+ N C +NGGC+HLC G+ Y C CP
Sbjct: 285 KLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQ--NYTCACPTGFR 334
Score = 33.7 bits (76), Expect = 0.40
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD--DLEPNEEC 1325
N CA + G CS C + C C +L P+
Sbjct: 2 NECA-EEGYCSQGCT--NSEGAFQCWCEAGYELRPDRRS 37
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 252 bits (645), Expect = 3e-76
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 26/252 (10%)
Query: 163 RVSLSNKKYTA------IIRNLHNVLAVDYHYKKNLLVW-----------------NTHI 199
R+ L + ++ + + ++ W T I
Sbjct: 14 RLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI 73
Query: 200 VHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRD 259
+ + S +++D + +FWTD+ R+E +DG R++L + PR ++ P
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133
Query: 260 AFVFWTDWGK-TPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIES 318
++WTDW + PKIE MDG+NR+++ +N+ PNGLT D +L W +A H E
Sbjct: 134 GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC 193
Query: 319 SDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNIKTVHS-GLHF 377
+ R++V+ GL +PF +T Y +++TDW T S+ + + + + T H
Sbjct: 194 LNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR 252
Query: 378 PMNIRSYHPHRQ 389
I
Sbjct: 253 LYGITIALSQCP 264
Score = 233 bits (596), Expect = 2e-69
Identities = 74/255 (29%), Positives = 120/255 (47%), Gaps = 8/255 (3%)
Query: 709 FLLVSQTDKIRQISLD---VEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIER 765
LL +QT KI ++ L+ ++ K++ + D ++ +YW+DISE +I R
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 766 VRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY 825
++ DL E IA+D +GR I+WTD I V+ +DG +VLF L
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 826 RPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDN 884
PR IV G + W DW+R N +IE +HMDGTNR + + + P+ L D +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSS 179
Query: 885 PKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRANKYD 944
+L WVD H E A ++ +P+ +T +Y+TD + + + +
Sbjct: 180 -QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238
Query: 945 VKDIVEFAQVDRPWL 959
K++ F + L
Sbjct: 239 SKEMDTFHPHKQTRL 253
Score = 208 bits (531), Expect = 7e-61
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 4/207 (1%)
Query: 437 LIYARQKDLRISQL--TEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRA 494
L++A+ + L T + K ++ +A++ + +YW D+ I RA
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 495 HINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSE 554
++G +IR + P G+A+D ++WT+S+ + IEV+ +DGT +LF L
Sbjct: 64 SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 555 PRDIAVNPIGGIMYWCSWG-DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
PR I +P+ G +YW W D KIE + MDG++R ILA D+L P GL D +S+L W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 614 ANVGLKTIEFTNLDGTRKQTLIA-LHH 639
+ G E N ++ ++ L +
Sbjct: 184 VDAGTHRAECLNPAQPGRRKVLEGLQY 210
Score = 185 bits (472), Expect = 7e-53
Identities = 58/277 (20%), Positives = 106/277 (38%), Gaps = 20/277 (7%)
Query: 1014 FLLYTSRFGVIRRISLDTAD---LLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLR 1070
LL+ G I R+ L+ I + ++Y+ D+ ++
Sbjct: 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 1071 TFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-D 1129
+ I + + +D + I++ DSQ+ I VA+ DG +++L +
Sbjct: 62 RASLHGGEPTTIIRQDLGSP-EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG 120
Query: 1130 LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDF 1189
L+ P I P RG L+++ W KIE ++DG+ R +L +++L PN L D
Sbjct: 121 LVNPRGIVTDPVRGNLYWTDWN----RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA 176
Query: 1190 KQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA-PYGLSVRQSPGKAFIVELYWTDWEAM 1248
+L W D+ R E + R+ V+ + P+ ++ LY+TDW+
Sbjct: 177 FSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGK-------NLYYTDWKTN 229
Query: 1249 SVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISASKQ 1285
SV+ + Q I +
Sbjct: 230 SVI--AMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264
Score = 149 bits (379), Expect = 2e-40
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 6/212 (2%)
Query: 174 IIRNLHNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCD 233
+ + + +H + + L+ D V V+WTD + +
Sbjct: 5 LFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64
Query: 234 LDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFW 293
L G +I ++ P + + +FWTD +IE +MDG+ R+V+ +
Sbjct: 65 LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ-LDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 294 PNGLTIDFEEDRLYWTE--AKHHFIESSDLDGSRRQQVITKGLPHPFGITL--YEDFVFW 349
P G+ D LYWT+ + IE+S +DG+ R+ + L P G+T + + W
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 350 TDWHTKSISSANKYTGRNIKTVHSGLHFPMNI 381
D T N + V GL +P +
Sbjct: 184 VDAGTHRAECLN-PAQPGRRKVLEGLQYPFAV 214
Score = 130 bits (328), Expect = 1e-33
Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 9/197 (4%)
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
T + ++ S IA + +++W D + I A ++GT + + P G+
Sbjct: 68 GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 516 AIDWRTNKLYWTE--SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWG 573
D LYWT+ + IE S++DGT +L NL P + + + W G
Sbjct: 128 VTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG 187
Query: 574 DLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQT 633
H+ E R + L+ P + LY+ + ++ +L +++
Sbjct: 188 -THRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMD 243
Query: 634 LIALHHLKVMTKVVGLT 650
H T++ G+T
Sbjct: 244 TF---HPHKQTRLYGIT 257
Score = 123 bits (311), Expect = 2e-31
Identities = 53/310 (17%), Positives = 102/310 (32%), Gaps = 64/310 (20%)
Query: 218 FVFWTDTAARRVEFCDLDGKN-----RKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
+ + T ++E L+ K + + D V+WTD P
Sbjct: 3 HLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS-EPS 59
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITK 332
I R + G I+ +++ P G+ +D ++WT+++ IE + +DG++R+ +
Sbjct: 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Query: 333 GLPHPFGITL--YEDFVFWTDWHTKS--ISSANKYTGRNIKTVHSGLHFPMNIRSYHPHR 388
GL +P GI ++WTDW+ + I +++ L P
Sbjct: 120 GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN--------- 170
Query: 389 QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRIS 448
GLT + L + R
Sbjct: 171 ------------------------------GLTFDAFSS--------QLCWVDAGTHRAE 192
Query: 449 QLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVI-RH 507
L P VL ++ A+ S +LY+ D + + + + + + H
Sbjct: 193 CLNPAQPGRRKVL--EGLQYPFAVT--SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248
Query: 508 NTKKPAGVAI 517
+ G+ I
Sbjct: 249 KQTRLYGITI 258
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 113 bits (284), Expect = 2e-27
Identities = 30/241 (12%), Positives = 79/241 (32%), Gaps = 22/241 (9%)
Query: 140 YLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRNLHNVLAV--DYHY------KKN 191
Y+ + + +R+ R+ + T + + ++ +Y Y +
Sbjct: 69 YVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTA 128
Query: 192 LLVWNTHIVHTGMQSV---GSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNID 248
++ I + + + + + ++ + ++ D ++ + N
Sbjct: 129 TSLYRIRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188
Query: 249 KPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYW 308
KP + D V++ D + I V ++ N V+ NI N + Y
Sbjct: 189 KPVVL----DDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV----YGSLIFYQ 240
Query: 309 TEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKYTGRNI 368
+ + DG+ +++ I + +V++TD+ + + I
Sbjct: 241 RGGDNPALCVVKNDGTGFKELAKG---EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297
Query: 369 K 369
K
Sbjct: 298 K 298
Score = 91.3 bits (226), Expect = 6e-20
Identities = 33/261 (12%), Positives = 78/261 (29%), Gaps = 25/261 (9%)
Query: 690 PAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTK 749
N + R + S+ + + +I + + +
Sbjct: 62 ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD-------PCIYASLI 114
Query: 750 NEYIYWSDISEKTIERV-RFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMV 808
YIY+ +T + R + G E+ + + + R Y+ + +
Sbjct: 115 GNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN---HYLFTCNTSDRYFYYNNPKNGQLYR 171
Query: 809 SDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFE 868
D ++ + + N Y+P + + + D +R +N I +++ N
Sbjct: 172 YDTASQSEALFYDCNCYKPVVL----DDTNVYYMDVNR----DNAIVHVNINNPNP---- 219
Query: 869 TEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDYYVY 928
+ + + + Y + G + + + V YVY
Sbjct: 220 VVLTEANIEHYNVYGSLIFYQRGGDNPAL-CVVKNDGTGFKEL-AKGEFCNINVTSQYVY 277
Query: 929 WTDVQHSKIYRANKYDVKDIV 949
+TD +K Y + + I
Sbjct: 278 FTDFVSNKEYCTSTQNPDTIK 298
Score = 90.2 bits (223), Expect = 2e-19
Identities = 17/174 (9%), Positives = 47/174 (27%), Gaps = 16/174 (9%)
Query: 465 NVKSVVAIAWESANDSLYWA---DVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRT 521
+ I + +Y+ + R I+G + + +
Sbjct: 102 VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-----NHYLFTCNTSD 156
Query: 522 NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMA 581
Y+ + + + L + N +P + +Y+ + I
Sbjct: 157 RYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD----DTNVYYMDVNRDNAIVHV 212
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI 635
++ + +L ++++ + Y + DGT + L
Sbjct: 213 NINNPNPVVLTEANIEHYNV----YGSLIFYQRGGDNPALCVVKNDGTGFKELA 262
Score = 84.0 bits (207), Expect = 1e-17
Identities = 26/172 (15%), Positives = 61/172 (35%), Gaps = 15/172 (8%)
Query: 465 NVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKL 524
+K+ +++ Y+ + +NG++ R + N KP + +
Sbjct: 143 KIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTN----V 198
Query: 525 YWTESEYNW-IEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM 583
Y+ + + I N++ P +L N+ N G ++++ GD + +
Sbjct: 199 YYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQRGGDNPALCVVKN 253
Query: 584 DGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLI 635
DG+ LA N I++ + +Y+ + T+ +
Sbjct: 254 DGTGFKELAKGEFCN-----INVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 67.1 bits (163), Expect = 6e-12
Identities = 27/247 (10%), Positives = 62/247 (25%), Gaps = 40/247 (16%)
Query: 1009 SRTREFLLYTSRFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGN 1068
+ ++ + RI + + N IY+ +
Sbjct: 75 QKITSQTFFSYDRNSLCRIKRNGHGSTVLD-------PDPCIYASLIGNYIYYLHYDTQT 127
Query: 1069 LRTF-----DMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHK 1123
+ D + +IK L + YY + + + + Q +
Sbjct: 128 ATSLYRIRIDGEEKKKIKNHYLFT--------CNTSDRYFYYNNPKNGQLYRYDTASQSE 179
Query: 1124 KILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPN 1183
+ + V ++Y ++ I V ++ VL E ++ N
Sbjct: 180 ALFYDC---NCYKPVVLDDTNVYYMDVN--RDN---AIVHVNINNPNPVVLTEANIEHYN 231
Query: 1184 ELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVAPYGLSVRQSPGKAFIVELYWT 1243
+ + N + G K + Q +Y+T
Sbjct: 232 V----YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFCNINVTSQY--------VYFT 279
Query: 1244 DWEAMSV 1250
D+ +
Sbjct: 280 DFVSNKE 286
Score = 67.1 bits (163), Expect = 6e-12
Identities = 18/185 (9%), Positives = 62/185 (33%), Gaps = 17/185 (9%)
Query: 199 IVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPR 258
++ SL ++++ ++ + A + +DG+ +K + +
Sbjct: 102 VLDPDPCIYASLIGNYIY-YLHYDTQTATSLYRIRIDGEEKKKIK-----NHYLFTCNTS 155
Query: 259 DAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHF-IE 317
D + ++ + ++ R + + + N + P + ++ +Y+ + I
Sbjct: 156 DRYFYYNNPKNG-QLYRYDTASQSEALFYDCNCYKP----VVLDDTNVYYMDVNRDNAIV 210
Query: 318 SSDLDGSRRQQVITKGLPHPFGITLYEDFV-FWTDWHTKSISSANKYTGRNIKTVHSGLH 376
+++ + + H +Y + + ++ G K + G
Sbjct: 211 HVNINNPNPVVLTEANIEHY---NVYGSLIFYQRGGDNPALCVVK-NDGTGFKELAKGEF 266
Query: 377 FPMNI 381
+N+
Sbjct: 267 CNINV 271
Score = 65.1 bits (158), Expect = 3e-11
Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 27/219 (12%)
Query: 735 LRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDA--- 791
+ +L ++ ++ Y+Y+ + + I F R L N S +D
Sbjct: 49 IHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPC 108
Query: 792 -----IGRKIYWTDMN---AQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
IG IY+ + A ++ IDG+ K + + + +
Sbjct: 109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKK-----IKNHYLFTCNTSDRYFYYNN 163
Query: 844 WSRTRLTNNRIEMAHMDGTNRA-VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTL 902
N ++ + A ++ P L D+ +Y++D ++
Sbjct: 164 PK-----NGQLYRYDTASQSEALFYDCNCYKPVVL-----DDTNVYYMDVNRDNAIVHVN 213
Query: 903 ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941
+ + Y + +
Sbjct: 214 INNPNPVVLTEANIEHYNVYGSLIFYQRGGDNPALCVVK 252
Score = 62.8 bits (152), Expect = 2e-10
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 217 DFVFWTD-TAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIER 275
V++ D + +++ N +L NI+ + + +F+ G P +
Sbjct: 196 TNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY-----NVYGSLIFYQRGGDNPALCV 250
Query: 276 VEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVI 330
V+ DG+ K + I+ +Y+T+ + + + +
Sbjct: 251 VKNDGTGFKELAKGEFCN-----INVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 62.0 bits (150), Expect = 3e-10
Identities = 30/311 (9%), Positives = 90/311 (28%), Gaps = 48/311 (15%)
Query: 522 NKLYWTESEYNW-IEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEM 580
+++++ + N + N+DG+ LS + +N +Y+ +
Sbjct: 26 GEVFFSNTNDNGRLYAMNIDGSNIH-----KLSNDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 581 AGMDGSHRHILASD-------SLKNPTGLAIDLENSRLYWAN---VGLKTIEFTNLDGTR 630
+ L + L + +Y+ + ++ +DG
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE 140
Query: 631 KQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCP 690
K+ + +H ++ ++ + + + + + L + + V
Sbjct: 141 KKKIK--NHYLFTCNTSD--RYFYYNNPKNGQLYRYDTASQSEA---LFYDCNCYKPVVL 193
Query: 691 AGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKN 750
+ ++ V++ + I ++++ L +
Sbjct: 194 DDTNVY------------YMDVNRDNAIVHVNINNPNP-------VVLTEANIEHYNVYG 234
Query: 751 EYI-YWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVS 809
I Y + V+ D TG + L + ++ + +Y+TD + +
Sbjct: 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKGEFC-----NINVTSQYVYFTDFVSNKEYCT 289
Query: 810 DIDGKNAKVLF 820
+
Sbjct: 290 STQNPDTIKAL 300
Score = 54.0 bits (129), Expect = 1e-07
Identities = 38/346 (10%), Positives = 95/346 (27%), Gaps = 90/346 (26%)
Query: 259 DAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT--------- 309
D VF+++ ++ + +DGSN + + + I+ +++ +Y+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKNYVYYVRNNNQKITS 79
Query: 310 ----EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYEDFVFWTDWHTKSISSANKY-- 363
+ + +G + + +L +++++ + T++ +S +
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYA---SLIGNYIYYLHYDTQTATSLYRIRI 136
Query: 364 TGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLS 423
G K + + F N
Sbjct: 137 DGEEKKKIKNHYLFTCNTS----------------------------------------- 155
Query: 424 PDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYW 483
+ Y K+ ++ + + E + N V + + ++Y+
Sbjct: 156 ----------DRYFYYNNPKNGQLY-RYDTASQSEALFYDCNCYKPVVL----DDTNVYY 200
Query: 484 ADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGT 542
DV + I +IN + N + Y + + V DGT
Sbjct: 201 MDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG-SL---IFYQRGGDNPALCVVKNDGT 256
Query: 543 YPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
L +N +Y+ + +K
Sbjct: 257 GFKELAKGEFC-----NINVTSQYVYFTDFVS-NKEYCTSTQNPDT 296
Score = 51.3 bits (122), Expect = 1e-06
Identities = 36/315 (11%), Positives = 96/315 (30%), Gaps = 56/315 (17%)
Query: 478 NDSLYWADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWT--------- 527
+ +++++ NG + +I+G+ N+ + + + D N +Y+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGS---NIHKLSNDTAMYINADK--NYVYYVRNNNQKITS 79
Query: 528 ----ESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDL--HKIEMA 581
+ N + +G T L I + IG +Y+ + +
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGST-----VLDPDPCIYASLIGNYIYYLHYDTQTATSLYRI 134
Query: 582 GMDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTLIALHHLK 641
+DG + +KN + + Y+ N + + + +
Sbjct: 135 RIDGEEKK-----KIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN--- 186
Query: 642 VMTKVVGLTDIDIFHRRRSKKTHPCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT 701
K V L D ++++ ++ + N + + L + I G+L+
Sbjct: 187 -CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANIEHYNVYGSLIF----- 238
Query: 702 CSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEK 761
+ + + D ++L +++ ++Y+Y++D
Sbjct: 239 -------YQRGGDNPALCVVKNDGTGF-------KELAKGEFCNINVTSQYVYFTDFVSN 284
Query: 762 TIERVRFDMTGRERL 776
+
Sbjct: 285 KEYCTSTQNPDTIKA 299
Score = 45.1 bits (106), Expect = 1e-04
Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 44/294 (14%)
Query: 851 NNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRA 910
N R+ ++DG+N ++ + + I+ N +Y+V + I +T +
Sbjct: 36 NGRLYAMNIDGSNI----HKLSNDTAMYINADKN-YVYYVRNNNQKITSQTFFSYDRNSL 90
Query: 911 YAVQSHPYTLTVLD--------------YYVYWTDVQHSKIYRANKYDVKDIVEFAQVDR 956
++ + + TVLD YY+++ + +YR D ++ +
Sbjct: 91 CRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRI-DGEEKKKIKNHYL 149
Query: 957 PWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLL 1016
+ + + NN L + + + A + + +
Sbjct: 150 FTCNTSDRYFYY------NNPKNGQLYRYDTASQSEA----LFYDCNCYKPVVLDDTNVY 199
Query: 1017 YTS--RFGVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDM 1074
Y R I ++++ + + +T E+ + Y + Y + L
Sbjct: 200 YMDVNRDNAIVHVNINNPNPVVLTEANIEHYNV------YGSLIFYQRGGDNPALCVVKN 253
Query: 1075 SDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN 1128
+ + L + I+ + +Y+ D + + +
Sbjct: 254 DGTGFKE---LAKGEFCN---INVTSQYVYFTDFVSNKEYCTSTQNPDTIKALQ 301
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 102 bits (256), Expect = 3e-26
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
G CI Q+ CD++ DC G DE CP C P +C + CI + W CD PD
Sbjct: 11 HDGKCISRQFVCDSDRDCLDGSDEASCP----VLTCGPASFQCNSSTCIPQLWACDNDPD 66
Query: 84 CSLGEDERNCN 94
C G DE
Sbjct: 67 CEDGSDEWPQR 77
Score = 81.2 bits (201), Expect = 8e-19
Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 28/104 (26%)
Query: 57 KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEV 116
K CS E RC G CI + ++CD DC G DE +C F C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC----------- 49
Query: 117 GSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
S+ C + + CD C G DE
Sbjct: 50 NSS--------------TCIPQLWACDNDPDCEDGS---DEWPQ 76
Score = 31.9 bits (73), Expect = 0.19
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCPKR 163
C S++++CD + C G DE CP
Sbjct: 15 CISRQFVCDSDRDCLDGS---DEASCPVL 40
>2fyj_A Low-density lipoprotein receptor-related protein 1; double
module, complement type repeat, calcium, beta-2
hairpin, loop-structures; NMR {Homo sapiens} PDB:
2fyl_B
Length = 82
Score = 98.9 bits (247), Expect = 5e-25
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDG 80
C +G CIP W CD + DC DE + P + C G CI W CD
Sbjct: 11 SCA-SGRCIPISWTCDLDDDCGDRSDESASC--AYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 81 IPDCSLGEDERNCN 94
DC DE C+
Sbjct: 68 DNDCGDNSDEAGCS 81
Score = 80.4 bits (199), Expect = 1e-18
Identities = 24/107 (22%), Positives = 33/107 (30%), Gaps = 30/107 (28%)
Query: 56 PKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC--NKTCDAQKEFSCMKLAEPRP 113
+ C P++ C +G CI +W CD DC DE TC +F+C
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN------ 55
Query: 114 TEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
C + + CD C DE C
Sbjct: 56 -------------------GRCININWRCDNDNDCGDNS---DEAGC 80
Score = 44.6 bits (106), Expect = 6e-06
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ 52
CN G CI W+CDN+ DC DE C
Sbjct: 52 TCN-NGRCININWRCDNDNDCGDNSDEAGCSH 82
Score = 28.0 bits (63), Expect = 4.6
Identities = 6/27 (22%), Positives = 7/27 (25%), Gaps = 3/27 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCP 161
C + CD C DE
Sbjct: 17 CIPISWTCDLDDDCGDRS---DESASC 40
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 69.2 bits (170), Expect = 5e-15
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 54 SPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNK 95
P K+C D+ +C CI W CD DC DE +C K
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 47.3 bits (113), Expect = 3e-07
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQ 52
+C R CIP+ W+CD + DC DE CP+
Sbjct: 14 QC-RNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 31.1 bits (71), Expect = 0.16
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCPK 162
C + CD C DE CPK
Sbjct: 20 CIPSVWRCDEDDDCLDHS---DEDDCPK 44
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 73.0 bits (178), Expect = 2e-14
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTT--GHCILKTWLC 78
+ P + + + +E++ P C EH+C CI K ++C
Sbjct: 25 ESLLDDRLDPKRIRKAGSLRHRV--EELEDPS------CDEHEHQCGGDDPQCISKLFVC 76
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSC 105
DG DC GEDE++C A +F
Sbjct: 77 DGHNDCRNGEDEKDCTLPTKAGDKFIG 103
Score = 47.9 bits (113), Expect = 6e-06
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 18/86 (20%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
CI + CD DC GEDE C ++ D
Sbjct: 64 GDDPQCISKLFVCDGHNDCRNGEDEKDCT----------------LPTKAGDKFIGDVCF 107
Query: 83 D-CSLGEDERNCNKTCDAQKEFSCMK 107
D C+ E + ++ +
Sbjct: 108 DHCTKRRPE-HMTLAFESSSIAAFFT 132
Score = 34.4 bits (78), Expect = 0.14
Identities = 19/134 (14%), Positives = 29/134 (21%), Gaps = 45/134 (33%)
Query: 35 CDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCN 94
+ ++ K G + E +
Sbjct: 11 IERTNKITTSISHVES---------------LLDDRLDPKRIRKAGSLRHRV---EELED 52
Query: 95 KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEG 154
+CD E C C SK ++CDG C GE
Sbjct: 53 PSCDE-HEHQC-----------------------GGDDPQCISKLFVCDGHNDCRNGE-- 86
Query: 155 PDERHCPKRVSLSN 168
DE+ C +
Sbjct: 87 -DEKDCTLPTKAGD 99
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 74.6 bits (183), Expect = 1e-13
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 35/153 (22%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDC 84
C + + D + + D +C G I + CDGI DC
Sbjct: 175 LAECTFTKRRTMGYQDFADVVCYTQKADS-----PMDDFFQCVNGKYISQMKACDGINDC 229
Query: 85 SLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDG 144
DE C K F C + G C +Y C+G
Sbjct: 230 GDQSDELCCKACQ--GKGFHC---------KSGV----------------CIPSQYQCNG 262
Query: 145 KKHCPRGEEGPDERHCPKRVSLSNKKYTAIIRN 177
+ C GE DE C S++ ++ + +
Sbjct: 263 EVDCITGE---DEVGCAGFASVAQEETEILTAD 292
Score = 66.9 bits (163), Expect = 3e-11
Identities = 25/95 (26%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDC 84
G I CD DC DE+ C C C +G CI + C+G DC
Sbjct: 213 NGKYISQMKACDGINDCGDQSDELCCKA------CQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 85 SLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSN 119
GEDE C +E + + A+
Sbjct: 267 ITGEDEVGCAGFASVAQEETEILTADMDAERRRIK 301
Score = 52.6 bits (126), Expect = 7e-07
Identities = 16/141 (11%), Positives = 27/141 (19%), Gaps = 40/141 (28%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGI 81
+ GA +++ + + C + C G
Sbjct: 140 GFQQGADTQRRFKLSDLSINSTECLHVHCRGLE-----------TSLAECTFTKRRTMGY 188
Query: 82 PDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYL 141
D + + F C+ S+
Sbjct: 189 QDFADVVCYTQKADSPMDD-FFQCV-------------------------NGKYISQMKA 222
Query: 142 CDGKKHCPRGEEGPDERHCPK 162
CDG C DE C
Sbjct: 223 CDGINDCGDQS---DELCCKA 240
Score = 35.7 bits (82), Expect = 0.13
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
++G CIP+Q+QC+ E DC GEDE A + T + + +P
Sbjct: 249 KSGVCIPSQYQCNGEVDCITGEDE--VGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Query: 84 CSLG 87
S G
Sbjct: 307 LSCG 310
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 65.0 bits (159), Expect = 2e-13
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 55 PPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQ 100
P +C P E C CI + W CDG DC DE C
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA--LCHQH 45
Score = 43.1 bits (102), Expect = 9e-06
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
C CI +W+CD + DC DE
Sbjct: 12 ACA-NSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 26.5 bits (59), Expect = 7.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHC 160
C +++ CDG C DE
Sbjct: 18 CIQERWKCDGDNDCLDNS---DEAPA 40
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor,
cysteine-rich module, calcium; 1.70A {Homo sapiens}
SCOP: g.12.1.1
Length = 37
Score = 64.1 bits (157), Expect = 2e-13
Identities = 18/35 (51%), Positives = 20/35 (57%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
CS E C +G CI +W CDG PDC DE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 44.9 bits (107), Expect = 2e-06
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 24 RTGACIPAQWQCDNEFDCEMGEDEMKC 50
+G CI + W+CD DC+ DE C
Sbjct: 10 LSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 28.7 bits (65), Expect = 1.0
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHC 160
C + CDG C DE +C
Sbjct: 14 CIHSSWRCDGGPDCKDKS---DEENC 36
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand
binding, calcium binding, complement-like repeat, LRP
receptor, signaling protein; 1.85A {Homo sapiens} SCOP:
g.12.1.1
Length = 44
Score = 63.9 bits (156), Expect = 4e-13
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 59 CSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKT 96
CS + +C +G CI + W CDG DC DE + N T
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
KCN +G CIP W CD + DC DE
Sbjct: 11 KCN-SGRCIPEHWTCDGDNDCGDYSDETHA 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 2e-12
Identities = 108/707 (15%), Positives = 201/707 (28%), Gaps = 209/707 (29%)
Query: 384 YHPHR---QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYA 440
+H H + + + S F C K + P+ +L
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDC------------KDVQDMPKSILSKE 49
Query: 441 RQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAW--ESANDSLYWADVENGEINRAHING 498
+ + T+ + W S + + VE IN
Sbjct: 50 EIDHI----IMSKDAVSGTLR----------LFWTLLSKQEEMVQKFVEEVL----RINY 91
Query: 499 TFQYNVIRHNTKKPAGVAIDWRT--NKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPR 556
F + I+ ++P+ + + ++LY + VS L P L Q L E R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELR 148
Query: 557 DIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616
P ++ + G+ GS + +A D + + +++W N+
Sbjct: 149 -----PAKNVL-------ID-----GVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNL 189
Query: 617 GLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHR--------RR--SKKTHP- 665
T L+ Q L L+ + +I R RR K +
Sbjct: 190 KNCNSPETVLE--MLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 666 --------CNEN-----NGGC--------------------SHLCLIAPKDG-------- 684
N N C +H+ L
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 685 --IRCV-CPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVEYRYPIVLPLRQLKMV 741
++ + C +L RE + NP + +++++ + + D +++ L + +
Sbjct: 306 LLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTI-IE 360
Query: 742 ASVDVDTKNEY--IYWS--------DISEKTIERVRFDMTGRE-RLVVNDLNRTESIAVD 790
+S++V EY ++ I + + FD+ + +VVN L++ +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 791 AIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMV-WADWSRTRL 849
I + + ++ + A L+ RSIV HY + D L
Sbjct: 421 PKESTISIPSI--YLELKVKLENEYA-----LH----RSIVDHYNIPKTFDSDDLIPPYL 469
Query: 850 TN----------NRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEY 899
IE R VF +D+ + +E
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVF-----------LDFR------F-------LEQ 505
Query: 900 KTLATGRAKRAYAVQSHPYTLTVLDYYV-YWTDVQHSKIYRANKYDVKDIVEFAQVDRPW 958
K A A + TL L +Y Y D + Y V I++F
Sbjct: 506 KIRHDSTAWNASGSILN--TLQQLKFYKPYICD--NDPKYERL---VNAILDF------- 551
Query: 959 LVRAAQN-ISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADR 1004
L + +N I + L I A +
Sbjct: 552 LPKIEENLICSKYTD------LLRIALMAEDE-------AIFEEAHK 585
Score = 58.3 bits (140), Expect = 1e-08
Identities = 101/673 (15%), Positives = 187/673 (27%), Gaps = 215/673 (31%)
Query: 184 VDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILI 243
Y YK I+ +V +F + D+ + IL
Sbjct: 14 HQYQYKD--------ILSVFED-------AFVDNF-----------DCKDVQDMPKSILS 47
Query: 244 ANNIDKPRAVIVHPRDA-----FVFWTDWGKTPKIERVEMDGSNRKVILTENIFW----- 293
ID I+ +DA +FWT K ++ + ++ +L N +
Sbjct: 48 KEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSPI 98
Query: 294 ------PNGLTIDFEE--DRLYWTE---AKHHFIESSDLDGSRRQQV--ITKGL----PH 336
P+ +T + E DRLY AK++ SR Q + + L P
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRLQPYLKLRQALLELRPA 150
Query: 337 PFGITLY------------------------EDFVFWTDWHTKSISSANKYTGRNI---- 368
+ + + +FW ++ N + +
Sbjct: 151 K-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLKNCNSPETVLEML 202
Query: 369 KTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHR----------------- 411
+ + + RS H + H + +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 412 FTCQCPLGLT-----------------LSPDNKSCSESPEELL-IYARQKDLRISQLTEP 453
F C + LT +S D+ S + +P+E+ + + D R L P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--P 319
Query: 454 SPTFETVLPVMNVKSVVAIAWESANDSL----YWADVENGEINRAHINGTFQY---NVIR 506
T P ++I ES D L W V ++ I + R
Sbjct: 320 -REVLTTNPR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLNVLEPAEYR 372
Query: 507 HNTKK----PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNP 562
+ P I L W + + + V ++ + L + E
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKEST------ 425
Query: 563 IGGIMYWCSWGDLH---KIEMAGMDGSHRHILASDSLK---NPTGLAIDLENSRLYWAN- 615
S ++ K+++ HR I+ ++ + L + Y+ +
Sbjct: 426 -------ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYSH 476
Query: 616 VGLKTIEFTNLDGTRKQTLIALHHLKVMT---KVVGLTDI--DIFHRRRSKKTHPCNENN 670
+G HHLK + ++ + D F K H N
Sbjct: 477 IG--------------------HHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWN 515
Query: 671 GGCSHLCLIAP----KDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQTDKIRQISLDVE 726
S L + K I P L + L+ S+ + +I+L E
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 727 YRYPIVLPLRQLK 739
+Q++
Sbjct: 576 DEAIFEEAHKQVQ 588
Score = 38.3 bits (88), Expect = 0.022
Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 40/186 (21%)
Query: 1051 DYHYSKNLIYFADMRSGNLRTFDMSDSTR-------IKPI---P-------LMNDTIRDN 1093
Y Y L F D N D+ D + I I + T+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 1094 -------FVIDWVANNIYYIDSQMHTINVARSD------GQHKKIL-VNDLMEPLAIAVY 1139
FV + + N ++ S + T S Q ++ N + +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--- 131
Query: 1140 PRRGLLFYSHWGLYDNSPTTKIEKVY-LDGSYRTVLVEEDL-AFPNELAIDFKQRRLFWA 1197
R L + P + + + GS +T + + ++ + +DFK +FW
Sbjct: 132 SRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWL 187
Query: 1198 DSTNKR 1203
+ N
Sbjct: 188 NLKNCN 193
Score = 33.7 bits (76), Expect = 0.48
Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 71/238 (29%)
Query: 1085 LMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGL 1144
+ D V + I+++ + S ++E L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWL-----NLKNCNSP--------ETVLEMLQ--------K 204
Query: 1145 LFY----SHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAI------------- 1187
L Y + D+S K+ + R +L + + N L +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAF 262
Query: 1188 DFKQRRLFWADSTNKRIEYCDFF-GRSRKIVISKVAPYGLSVRQSPGKAFIVELY--WTD 1244
+ + L T + + DF + + L+ + L + D
Sbjct: 263 NLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV------KSLLLKYLD 312
Query: 1245 WE--------------AMSVVIAREKSDTGQWDVHLIRSNQEDFLNIKAISAS-KQLT 1287
+S++ + WD + N + I I +S L
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTI--IESSLNVLE 367
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 61.2 bits (149), Expect = 3e-12
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 54 SPPKKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDERNCNKTC 97
+ C+ + +C G CI + CDG+ DC DE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRP 46
Score = 49.6 bits (119), Expect = 4e-08
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP 55
KC +CI ++++CD +DC DE CP P
Sbjct: 13 KCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPP 47
Score = 33.1 bits (76), Expect = 0.036
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 133 KDCFSKKYLCDGKKHCPRGEEGPDERHCPKR 163
C + +Y CDG C DE CP R
Sbjct: 18 SSCINSRYRCDGVYDCRDNS---DEAGCPTR 45
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 61.0 bits (148), Expect = 4e-12
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 56 PKKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNCNKT 96
+C P + RC+ G C + WLCDG PDC G DE C +
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 49.0 bits (117), Expect = 7e-08
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQA 53
G C P W CD DC+ G DE C +
Sbjct: 17 GAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47
Score = 32.8 bits (75), Expect = 0.043
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 122 YFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCP 161
F +C+ + +LCDG C G DE C
Sbjct: 9 QFRCSEPPGAHGECYPQDWLCDGHPDCDDGR---DEWGCG 45
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 60.7 bits (148), Expect = 5e-12
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 56 PKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCN 94
P C DE +C G CI W CDG DC DE++C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 52.3 bits (126), Expect = 4e-09
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+C G CIP +W+CD + DC DE C
Sbjct: 10 QCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 29.2 bits (66), Expect = 0.63
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCP 161
C ++ CDG C DE+ C
Sbjct: 17 CIPLRWRCDGDTDCMDSS---DEKSCE 40
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 66.5 bits (163), Expect = 7e-12
Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTES 529
+A+ ++Y AD N + + Q + P GVA+D + +Y T++
Sbjct: 113 LAV---DTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT 168
Query: 530 EYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRH 589
+ N + + +L + +++ P IAV+ G + Y +++ +
Sbjct: 169 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV-YVTEHNT-NQVVKLLAGSTTST 226
Query: 590 ILASDSLKNPTGLAIDLENSRLYWANVG 617
+L L P +A+D + +Y A+ G
Sbjct: 227 VLPFTGLNTPLAVAVD-SDRTVYVADRG 253
Score = 55.7 bits (135), Expect = 2e-08
Identities = 37/182 (20%), Positives = 69/182 (37%), Gaps = 15/182 (8%)
Query: 719 RQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV 778
R ++L VLP L + VDT+ +Y +D + V+ + + V+
Sbjct: 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRV--VKLAAGSKTQTVL 144
Query: 779 --NDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
LN + +AVD G +Y TD + ++ + + N VL + ++ P I V
Sbjct: 145 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD-EA 202
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEVI-WPSCLAIDYSDNPKLYWVDTSKH 895
G + + + N++ T V + P +A+D +Y D
Sbjct: 203 GTVYVTEHN-----TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT--VYVADRGND 255
Query: 896 TI 897
+
Sbjct: 256 RV 257
Score = 55.7 bits (135), Expect = 3e-08
Identities = 28/166 (16%), Positives = 64/166 (38%), Gaps = 9/166 (5%)
Query: 470 VAIAWESANDSLYWADVE-NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTE 528
VA+ + ++Y G + + T + + +P G+A+D +Y T+
Sbjct: 29 VAV---DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTD 84
Query: 529 SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
+ ++ T+L + L+ P +AV+ G + Y G+ +++ +
Sbjct: 85 FNNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVDTQGAV-YVADRGN-NRVVKLAAGSKTQ 141
Query: 589 HILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQTL 634
+L L +P G+A+D +Y + + + + L
Sbjct: 142 TVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVL 186
Score = 51.1 bits (123), Expect = 9e-07
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 15/201 (7%)
Query: 743 SVDVDTKNEYIYWSDISE-KTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDM 801
V VD+ +Y + + ++ TG L N L + + +AVD G +Y TD
Sbjct: 28 GVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF 85
Query: 802 NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861
N + + ++ N VL + L P + V G + AD NNR+
Sbjct: 86 NNRVVTLAA-GSNNQTVLPFDGLNYPEGLAVD-TQGAVYVADRG-----NNRVVKLAAGS 138
Query: 862 TNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSKHTIE-YKTLATGRAKRAYAVQSHPYT 919
+ V T + P +A+D S N +Y DT + + + + + + + P+
Sbjct: 139 KTQTVLPFTGLNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG 196
Query: 920 LTV-LDYYVYWTDVQHSKIYR 939
+ V VY T+ +++ +
Sbjct: 197 IAVDEAGTVYVTEHNTNQVVK 217
Score = 50.3 bits (121), Expect = 2e-06
Identities = 52/305 (17%), Positives = 99/305 (32%), Gaps = 72/305 (23%)
Query: 552 LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRL 611
P +AV+ G + Y S G ++ + +L + L P GLA+D +
Sbjct: 23 RLSPSGVAVDSAGNV-YVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TV 80
Query: 612 YWANVGLKTIEFTNLDGTRKQTLIALHHLKVMTKVVGLTDIDIFHRRRSKKTHPCNENNG 671
Y + + + G+ QT++ L +P
Sbjct: 81 YVTDFNNRVVTL--AAGSNNQTVLPFDGLN----------------------YPE----- 111
Query: 672 GCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENPSKFLLVSQT--DKIRQISLDVEYRY 729
G+ V G + V+ +++ +++ + +
Sbjct: 112 ------------GL-AVDTQGA----------------VYVADRGNNRVVKLAAGSKTQT 142
Query: 730 PIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAV 789
VLP L V VD +Y +D + ++ + + L D+ IAV
Sbjct: 143 --VLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAV 199
Query: 790 DAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRL 849
D G +Y T+ N ++ + VL + L P ++ V + AD
Sbjct: 200 DEAGT-VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRG---- 253
Query: 850 TNNRI 854
N+R+
Sbjct: 254 -NDRV 257
Score = 46.9 bits (112), Expect = 2e-05
Identities = 35/181 (19%), Positives = 69/181 (38%), Gaps = 21/181 (11%)
Query: 786 SIAVDAIGRKIYWTDM-NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADW 844
+AVD+ G +Y T ++ VL + LY+P+ + V G G + D+
Sbjct: 28 GVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDF 85
Query: 845 SRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLAT 904
+ N + +A + + +P LA+D +Y D + + K A
Sbjct: 86 N-----NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA--VYVADRGNNRV-VKLAAG 137
Query: 905 GRAKRAYAVQ--SHPYTLTVL-DYYVYWTDVQHSKIYRANKYD----VKDIVEFAQVDRP 957
+ + + P + V VY TD ++++ K + + ++ F + P
Sbjct: 138 SKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVV---KLEAESNNQVVLPFTDITAP 194
Query: 958 W 958
W
Sbjct: 195 W 195
Score = 44.9 bits (107), Expect = 9e-05
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 8/167 (4%)
Query: 202 TGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAF 261
G+ L+VD V+ D RV K + +L ++ P V V
Sbjct: 105 DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-N 162
Query: 262 VFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDL 321
V+ TD ++ ++E + +N+ V+ +I P G+ +D E +Y TE + +
Sbjct: 163 VYVTDTDNN-RVVKLEAESNNQVVLPFTDITAPWGIAVD-EAGTVYVTEHNTNQVVKLLA 220
Query: 322 DGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSI---SSANKYT 364
+ + GL P + + D V+ D + +S +
Sbjct: 221 GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267
Score = 44.2 bits (105), Expect = 2e-04
Identities = 37/184 (20%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 1025 RRISLDTADLLPVTLPFPE--YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKP 1082
R ++L LPF Y + D ++ +Y AD + + + S
Sbjct: 88 RVVTLAAGSNNQTVLPFDGLNYPEGLAVD---TQGAVYVADRGNNRVVKLA-AGSKTQTV 143
Query: 1083 IPLMNDTIRDNFV-IDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVYP 1140
+P + V +D + N+Y D+ + + ++ ++ +L D+ P IAV
Sbjct: 144 LPF-TGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDE 201
Query: 1141 RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
G ++ + + ++ K+ + TVL L P +A+D R ++ AD
Sbjct: 202 A-GTVYVTEHN---TN---QVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRG 253
Query: 1201 NKRI 1204
N R+
Sbjct: 254 NDRV 257
Score = 40.3 bits (95), Expect = 0.003
Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 10/138 (7%)
Query: 248 DKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLY 307
P V V V+ T G ++ ++ + V+ ++ P GL +D +Y
Sbjct: 24 LSPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVY 81
Query: 308 WTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITL-YEDFVFWTDWHTKSISSANKYT-- 364
T+ + + + ++ + GL +P G+ + + V+ D + K
Sbjct: 82 VTDFNNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KLAAG 137
Query: 365 GRNIKTVHS-GLHFPMNI 381
+ + GL+ P +
Sbjct: 138 SKTQTVLPFTGLNDPDGV 155
Score = 38.4 bits (90), Expect = 0.010
Identities = 26/131 (19%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 1100 ANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTT 1159
A +Y D + +A + + L P +AV +G ++ + G N+
Sbjct: 77 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDT-QGAVYVADRG---NN--- 129
Query: 1160 KIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS 1219
++ K+ +TVL L P+ +A+D ++ D+ N R+ + ++ ++
Sbjct: 130 RVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEAESNNQVVLPF 188
Query: 1220 KV--APYGLSV 1228
AP+G++V
Sbjct: 189 TDITAPWGIAV 199
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding
module, COMP repeat, calcium, cell membrane, coated
PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 61.4 bits (149), Expect = 8e-12
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTG--HCILKTWLC 78
C T C+P +W CD + DC G DE C + +G
Sbjct: 15 SCPGTHVCVPERWLCDGDKDCADGADESIAAG------CLYNSTGSGSGSGSTEELRVRL 68
Query: 79 DG 80
Sbjct: 69 AS 70
Score = 60.3 bits (146), Expect = 2e-11
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 55 PPKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
K C P C T C+ + WLCDG DC+ G DE C
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA-AGCLYN-STGS 54
Score = 29.4 bits (66), Expect = 1.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCP 161
C +++LCDG K C G DE
Sbjct: 22 CVPERWLCDGDKDCADGA---DESIAA 45
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 59.3 bits (144), Expect = 2e-11
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 53 ASPPKKCSPDEHRCTTGH-CILKTWLCDGIPDCSLGEDERNC 93
S K C P C H C+ + WLCDG DC+ G DE
Sbjct: 1 GSEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 49.3 bits (118), Expect = 6e-08
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASP 55
C T C+P +W CD + DC G DE
Sbjct: 13 SCPGTHVCVPERWLCDGDKDCADGADESIAAGCLY 47
Score = 27.7 bits (62), Expect = 2.9
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHCP 161
C +++LCDG K C G DE
Sbjct: 20 CVPERWLCDGDKDCADGA---DESIAA 43
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 65.4 bits (160), Expect = 2e-11
Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 15/213 (7%)
Query: 417 PLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWES 476
P G+T+S K + + K IS + V+ + S
Sbjct: 17 PYGITVSDKGK---------VWITQHKANMISCIN-LDGKITEYPLPTPDAKVMCLTI-S 65
Query: 477 ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536
++ +++ + +I R G + + + P G+ +++TE N I
Sbjct: 66 SDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGR 124
Query: 537 SNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSL 596
DG S P I + +++ + + I G
Sbjct: 125 ITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQN-NAIGRITESGDITEFKIPTPA 182
Query: 597 KNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
P G+ ++ L++ + I G
Sbjct: 183 SGPVGITKGNDD-ALWFVEIIGNKIGRITTSGE 214
Score = 63.1 bits (154), Expect = 1e-10
Identities = 55/334 (16%), Positives = 104/334 (31%), Gaps = 56/334 (16%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT 309
P + V + V+ T I + +DG + L LTI + +++T
Sbjct: 17 PYGITVSDKGK-VWITQHK-ANMISCINLDGKITEYPLPTPDAKVMCLTIS-SDGEVWFT 73
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSISSANKYTGRNI 368
E + I G ++ + P+GIT + +++T+ + I + T
Sbjct: 74 ENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIG---RIT---- 126
Query: 369 KTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKS 428
G IR Y + +Y P +TL DN
Sbjct: 127 ---DDG-----KIREYELPNKGSY------------------------PSFITLGSDNA- 153
Query: 429 CSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVEN 488
L + ++ I ++T S V I +D+L++ ++
Sbjct: 154 --------LWFTENQNNAIGRIT-ESGDITEFKIPTPASGPVGITK-GNDDALWFVEIIG 203
Query: 489 GEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLF 548
+I R +G I +P + L++TE N I +
Sbjct: 204 NKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNNIIEEYPI 262
Query: 549 WQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAG 582
+EP I + I + + K+ +
Sbjct: 263 QIKSAEPHGICFDG-ETIWFAMECDKIGKLTLIK 295
Score = 58.1 bits (141), Expect = 6e-09
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 56/312 (17%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
V+ T A + +LDGK + + K + + D V++T+ KI R+
Sbjct: 28 VWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISS-DGEVWFTENA-ANKIGRITK 85
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G ++ L P G+T +++TE + I DG R+ + +P
Sbjct: 86 KGIIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPS 144
Query: 339 GITLYEDFVFW-TDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA 397
ITL D W T+ +I + T T P S
Sbjct: 145 FITLGSDNALWFTENQNNAIG---RITESGDITEFKI---------------PTPASG-- 184
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTF 457
P+G+T D+ L + +I ++T S
Sbjct: 185 -------------------PVGITKGNDDA---------LWFVEIIGNKIGRIT-TSGEI 215
Query: 458 ETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAI 517
AI A L++ + +I R N + I+ + +P G+
Sbjct: 216 TEFKIPTPNARPHAITA-GAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF 274
Query: 518 DWRTNKLYWTES 529
D +++
Sbjct: 275 D--GETIWFAME 284
Score = 54.6 bits (132), Expect = 8e-08
Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 13/173 (7%)
Query: 1059 IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARS 1118
++ ++ + ++ P+P + + I +++ ++ + I
Sbjct: 28 VWITQHKANMISCINLDGKITEYPLPTPDAKVMC-LTIS-SDGEVWFTENAANKIGRITK 85
Query: 1119 DGQHKKI-LVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEE 1177
G K+ L N P I P G ++++ +I ++ DG R +
Sbjct: 86 KGIIKEYTLPNPDSAPYGITEGPN-GDIWFT------EMNGNRIGRITDDGKIREYELPN 138
Query: 1178 DLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
++P+ + + L++ ++ N I G + I A P G++
Sbjct: 139 KGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190
Score = 53.9 bits (130), Expect = 1e-07
Identities = 34/202 (16%), Positives = 69/202 (34%), Gaps = 19/202 (9%)
Query: 744 VDVDTKNEYIYWSDISEKTIERVRFDMTG--RERLVVNDLNRTESIAVDAIGRKIYWTDM 801
+ + + +++++ + I R G +E + N + I G I++T+M
Sbjct: 62 LTIS-SDGEVWFTENAANKI--GRITKKGIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM 117
Query: 802 NAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDG 861
N I DGK + P I + + + + NN I G
Sbjct: 118 NGNRIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQ-----NNAIGRITESG 171
Query: 862 TNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ--SHPY 918
T P + D L++V+ + I + +G + P+
Sbjct: 172 DITEFKIPTPASGPVGITKGNDDA--LWFVEIIGNKI-GRITTSGEITEFKIPTPNARPH 228
Query: 919 TLTVLDY-YVYWTDVQHSKIYR 939
+T +++T+ +KI R
Sbjct: 229 AITAGAGIDLWFTEWGANKIGR 250
Score = 52.7 bits (127), Expect = 3e-07
Identities = 51/361 (14%), Positives = 107/361 (29%), Gaps = 80/361 (22%)
Query: 770 MTGR--ERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRP 827
M + E + N I V G+ ++ T A I ++DGK + +
Sbjct: 1 MEFKLQELNLTNQDTGPYGITVSDKGK-VWITQHKANMISCINLDGKITEYPLPTPDAKV 59
Query: 828 RSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPK 886
+ + G + + + + N+I G + P + + +
Sbjct: 60 MCLTIS-SDGEVWFTENA-----ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD-- 111
Query: 887 LYWVDTSKHTIEYKTLATGRAKRAY--AVQSHPYTLTV-LDYYVYWTDVQHSKIYRANKY 943
+++ + + + I + G+ + S+P +T+ D +++T+ Q++ I R
Sbjct: 112 IWFTEMNGNRI-GRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR---I 167
Query: 944 DV-KDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSA 1002
DI EF PT + P GI
Sbjct: 168 TESGDITEFK---------------------------------IPTPA--SGPVGITKGN 192
Query: 1003 DRRSCFSRTREFLLYTSRF-GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNL 1058
D L + I RI+ T +P P +I +
Sbjct: 193 DDA---------LWFVEIIGNKIGRITTSGEITEFKIPTPNARP---HAITAG---AGID 237
Query: 1059 IYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVID---WVA---NNIYYIDSQMHT 1112
++F + + + ++ PI + + W A + I +
Sbjct: 238 LWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLIKDN 297
Query: 1113 I 1113
+
Sbjct: 298 M 298
Score = 51.9 bits (125), Expect = 5e-07
Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 20/195 (10%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV--NDLNRTESIAVDAIGRKIYWTD 800
+ N I++++++ I R G+ R N + I + + +++T+
Sbjct: 103 GITEG-PNGDIWFTEMNGNRI--GRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTE 158
Query: 801 MNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860
I G + P I + + + N+I
Sbjct: 159 NQNNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEII-----GNKIGRITTS 212
Query: 861 GTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SH 916
G T P + + L++ + + I + + Y +Q +
Sbjct: 213 GEITEFKIPTPNARPHAITAGAGID--LWFTEWGANKI-GRLTSNNII-EEYPIQIKSAE 268
Query: 917 PYTLTVLDYYVYWTD 931
P+ + +++
Sbjct: 269 PHGICFDGETIWFAM 283
Score = 51.9 bits (125), Expect = 6e-07
Identities = 29/213 (13%), Positives = 58/213 (27%), Gaps = 22/213 (10%)
Query: 1022 GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST 1078
I RI+ LP P I I+F +M +
Sbjct: 78 NKIGRITKKGIIKEYTLPNPDSAP---YGITEG---PNGDIWFTEMNGNRIGRITDDGKI 131
Query: 1079 RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKI-LVNDLMEPLAIA 1137
R +P + N +++ ++Q + I G + + P+ I
Sbjct: 132 REYELPNKGSYPSF-ITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGIT 189
Query: 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197
L++ KI ++ G + A P+ + L++
Sbjct: 190 KGND-DALWFVEII------GNKIGRITTSGEITEFKIPTPNARPHAITAG-AGIDLWFT 241
Query: 1198 DSTNKRIEYCDFFGRSRKIVIS--KVAPYGLSV 1228
+ +I + I P+G+
Sbjct: 242 EWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF 274
Score = 48.9 bits (117), Expect = 5e-06
Identities = 25/211 (11%), Positives = 65/211 (30%), Gaps = 18/211 (8%)
Query: 1022 GVIRRISLDTADLLPVTLPFPE-YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRI 1080
+I I+LD + LP P+ + + S ++F + + + +
Sbjct: 36 NMISCINLDG-KITEYPLPTPDAKVMCLTIS---SDGEVWFTENAANKIGRITKKGIIKE 91
Query: 1081 KPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVN-DLMEPLAIAVY 1139
+P + +I++ + + I DG+ ++ + P I +
Sbjct: 92 YTLPNPDSAPYG-ITEG-PNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLG 149
Query: 1140 PRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199
L+++ I ++ G + + P + L++ +
Sbjct: 150 SD-NALWFTENQ------NNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFVEI 201
Query: 1200 TNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
+I G + I P+ ++
Sbjct: 202 IGNKIGRITTSGEITEFKIPTPNARPHAITA 232
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 64.6 bits (158), Expect = 4e-11
Identities = 47/326 (14%), Positives = 100/326 (30%), Gaps = 56/326 (17%)
Query: 293 WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTD 351
P G+T E+ ++++T+ K + I S D G ++ + + + +++T+
Sbjct: 21 GPYGITSS-EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTE 79
Query: 352 WHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHR 411
I K + + T +P+ P+
Sbjct: 80 NGANKIG---KLSKKGGFTE-----YPLPQPDSGPY------------------------ 107
Query: 412 FTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVA 471
G+T + + + + RI +LT T
Sbjct: 108 -------GITEGLNGD---------IWFTQLNGDRIGKLT-ADGTIYEYDLPNKGSYPAF 150
Query: 472 IAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEY 531
I ++++L++ + +N I R G + + N P G+ L++ E
Sbjct: 151 ITL-GSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMG 208
Query: 532 NWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHIL 591
N I G + P I I ++ WG ++I D + +
Sbjct: 209 NKIGRITTTGEISEYDIPTPNARPHAITAGKNSEI-WFTEWGA-NQIGRITNDNTIQEYQ 266
Query: 592 ASDSLKNPTGLAIDLENSRLYWANVG 617
P G+ + +++A
Sbjct: 267 LQTENAEPHGITFGKDG-SVWFALKC 291
Score = 61.2 bits (149), Expect = 5e-10
Identities = 24/154 (15%), Positives = 53/154 (34%), Gaps = 4/154 (2%)
Query: 476 SANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIE 535
S + +++ + +I+ +G + + K + + +++TE+ N I
Sbjct: 28 SEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SLGDIWFTENGANKIG 86
Query: 536 VSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDS 595
+ G + Q S P I G I W + + +I DG+ +
Sbjct: 87 KLSKKGGFTEYPLPQPDSGPYGITEGLNGDI--WFTQLNGDRIGKLTADGTIYEYDLPNK 144
Query: 596 LKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
P + + +N L++ +I G
Sbjct: 145 GSYPAFITLGSDN-ALWFTENQNNSIGRITNTGK 177
Score = 58.9 bits (143), Expect = 3e-09
Identities = 48/317 (15%), Positives = 94/317 (29%), Gaps = 57/317 (17%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWT 309
P + V++T KI ++ G ++ + L + +++T
Sbjct: 22 PYGITSSEDGK-VWFTQHK-ANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SLGDIWFT 78
Query: 310 EAKHHFIESSDLDGSRRQQVITKGLPHPFGITLYED-FVFWTDWHTKSISSANKYTGR-N 367
E + I G + + + P+GIT + +++T + I K T
Sbjct: 79 ENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIG---KLTADGT 135
Query: 368 IKTVHSGLHFPMNIRSYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNK 427
I P +TL DN
Sbjct: 136 IYEYDLPNKGSY-------------------------------------PAFITLGSDNA 158
Query: 428 SCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVE 487
L + ++ I ++T + E N + V I + +L++ ++
Sbjct: 159 ---------LWFTENQNNSIGRIT-NTGKLEEYPLPTNAAAPVGITS-GNDGALWFVEIM 207
Query: 488 NGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLL 547
+I R G I +P + + +++++TE N I D T
Sbjct: 208 GNKIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQ 266
Query: 548 FWQNLSEPRDIAVNPIG 564
+EP I G
Sbjct: 267 LQTENAEPHGITFGKDG 283
Score = 51.9 bits (125), Expect = 6e-07
Identities = 47/347 (13%), Positives = 96/347 (27%), Gaps = 80/347 (23%)
Query: 777 VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGL 836
+ + I G+ +++T A I D G+ + + ++V L
Sbjct: 15 LSIPDSGPYGITSSEDGK-VWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SL 72
Query: 837 GLMVWADWSRTRLTNNRIEMAHMDGTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKH 895
G + + + N+I G P + + + +++ +
Sbjct: 73 GDIWFTENG-----ANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGD--IWFTQLNGD 125
Query: 896 TIEYKTLATGRAKR--AYAVQSHPYTLTV-LDYYVYWTDVQHSKIYRANKYDVKDIVEFA 952
I K A G S+P +T+ D +++T+ Q++ I R
Sbjct: 126 RI-GKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR------------- 171
Query: 953 QVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTR 1012
+ + PTN A P GI D
Sbjct: 172 -------ITNTGKLEE---------------YPLPTNA--AAPVGITSGNDGA------- 200
Query: 1013 EFLLYTSRF--GVIRRISLD---TADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSG 1067
L+ I RI+ + +P P +I + I+F + +
Sbjct: 201 ---LWFVEIMGNKIGRITTTGEISEYDIPTPNARP---HAITAG---KNSEIWFTEWGAN 251
Query: 1068 NLRTFDMSDSTRIKPIPLMNDTIRDNFVID-----WVA--NNIYYID 1107
+ ++ + + N W A I ++
Sbjct: 252 QIGRITNDNTIQEYQLQTENAEPHG-ITFGKDGSVWFALKCKIGKLN 297
Score = 51.5 bits (124), Expect = 7e-07
Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 4/141 (2%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
+++T+ A ++ G + + P + F T +I ++
Sbjct: 75 IWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWF-TQLN-GDRIGKLTA 132
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
DG+ + L +P +T+ ++ L++TE +++ I G + + P
Sbjct: 133 DGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPV 191
Query: 339 GITL-YEDFVFWTDWHTKSIS 358
GIT + +++ + I
Sbjct: 192 GITSGNDGALWFVEIMGNKIG 212
Score = 51.5 bits (124), Expect = 7e-07
Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 22/213 (10%)
Query: 1022 GVIRRISLDTADL---LPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDST 1078
I ++S LP P I I+F + + +
Sbjct: 83 NKIGKLSKKGGFTEYPLPQPDSGP---YGITEG---LNGDIWFTQLNGDRIGKLTADGTI 136
Query: 1079 RIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILV-NDLMEPLAIA 1137
+P + N +++ ++Q ++I + G+ ++ + + P+ I
Sbjct: 137 YEYDLPNKGSYPAF-ITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGIT 194
Query: 1138 VYPRRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWA 1197
G L++ KI ++ G + A P+ + K +++
Sbjct: 195 SGN-DGALWFVEIM------GNKIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFT 246
Query: 1198 DSTNKRIEYCDFFGRSRKIVISKVA--PYGLSV 1228
+ +I ++ + P+G++
Sbjct: 247 EWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279
Score = 51.2 bits (123), Expect = 9e-07
Identities = 48/312 (15%), Positives = 104/312 (33%), Gaps = 55/312 (17%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
V++T A ++ D G+ ++ + K +IV +++T+ G KI ++
Sbjct: 33 VWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENG-ANKIGKLSK 90
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G + L + P G+T +++T+ I DG+ + + +P
Sbjct: 91 KGGFTEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPA 149
Query: 339 GITLYED-FVFWTDWHTKSISSANKYTGRNIKTVHSGLHFPMNIRSYHPHRQPNYQSHCA 397
ITL D +++T+ SI + T +G + +
Sbjct: 150 FITLGSDNALWFTENQNNSIG---RITN-------TG----------------KLEEYPL 183
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTF 457
P + P+G+T D L + +I ++T +
Sbjct: 184 PTNAAA-------------PVGITSGNDGA---------LWFVEIMGNKIGRIT-TTGEI 220
Query: 458 ETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAI 517
AI N +++ + +I R + T Q ++ +P G+
Sbjct: 221 SEYDIPTPNARPHAITA-GKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279
Query: 518 DWRTNKLYWTES 529
+ +++
Sbjct: 280 G-KDGSVWFALK 290
Score = 50.0 bits (120), Expect = 2e-06
Identities = 26/210 (12%), Positives = 69/210 (32%), Gaps = 25/210 (11%)
Query: 1022 GVIRRISLDTADLLPVTLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIK 1081
+ +L D P I ++F ++ + + D S +
Sbjct: 8 FYLEEFNLSIPDSGP---------YGITSS---EDGKVWFTQHKANKISSLDQSGRIKEF 55
Query: 1082 PIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYP 1140
+P + + ++ +I++ ++ + I G + + P I
Sbjct: 56 EVPTPDAKVMC-LIVS-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL 113
Query: 1141 RRGLLFYSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
G ++++ +I K+ DG+ + ++P + + L++ ++
Sbjct: 114 -NGDIWFTQLN------GDRIGKLTADGTIYEYDLPNKGSYPAFITLG-SDNALWFTENQ 165
Query: 1201 NKRIEYCDFFGRSRKIVISKV--APYGLSV 1228
N I G+ + + AP G++
Sbjct: 166 NNSIGRITNTGKLEEYPLPTNAAAPVGITS 195
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 4/137 (2%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEM 278
+++T+ + GK + + N P + A +++ + KI R+
Sbjct: 159 LWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM-GNKIGRITT 216
Query: 279 DGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPF 338
G + + P+ +T + +++TE + I D + ++ + P
Sbjct: 217 TGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPH 275
Query: 339 GITLYED-FVFWTDWHT 354
GIT +D V++
Sbjct: 276 GITFGKDGSVWFALKCK 292
Score = 47.3 bits (113), Expect = 2e-05
Identities = 42/336 (12%), Positives = 101/336 (30%), Gaps = 75/336 (22%)
Query: 873 WPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAY--AVQSHPYTLTVL-DYYVYW 929
P + +++ + I +GR K + L V +++
Sbjct: 21 GPYGITSSEDGK--VWFTQHKANKI-SSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWF 77
Query: 930 TDVQHSKIYRANKYDVK-DIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLRNPT 988
T+ +KI + K E+ P
Sbjct: 78 TENGANKIGK---LSKKGGFTEY-----------------------------------PL 99
Query: 989 NFTCACPTGILLSADRRSCFSRTREFLLYTSRFG-VIRRISLDTADL---LPVTLPFPEY 1044
+ P GI + + +T G I +++ D LP +P
Sbjct: 100 PQPDSGPYGITEGLNGD---------IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYP-- 148
Query: 1045 MSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIY 1104
+ I S N ++F + ++ ++ + P+P ++
Sbjct: 149 -AFITLG---SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVG-ITSG-NDGALW 202
Query: 1105 YIDSQMHTINVARSDGQHKKILVND-LMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEK 1163
+++ + I + G+ + + P AI ++++ WG +I +
Sbjct: 203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGK-NSEIWFTEWG------ANQIGR 255
Query: 1164 VYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADS 1199
+ D + + ++ + A P+ + K +++A
Sbjct: 256 ITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFALK 290
Score = 47.3 bits (113), Expect = 2e-05
Identities = 28/204 (13%), Positives = 64/204 (31%), Gaps = 23/204 (11%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV--NDLNRTESIAVDAIGRKIYWTD 800
+ N I+++ ++ I + G N + I + + +++T+
Sbjct: 108 GITEG-LNGDIWFTQLNGDRI--GKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTE 163
Query: 801 MNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMD 860
+I GK + N P I G + + + N+I
Sbjct: 164 NQNNSIGRITNTGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIM-----GNKIGRITTT 217
Query: 861 GTNRAV-FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQ---SH 916
G T P + + +++ + + I + + Y +Q +
Sbjct: 218 GEISEYDIPTPNARPHAITAGKNSE--IWFTEWGANQI-GRITNDNTIQE-YQLQTENAE 273
Query: 917 PYTLTV-LDYYVYWTDVQHSKIYR 939
P+ +T D V++ KI +
Sbjct: 274 PHGITFGKDGSVWFAL--KCKIGK 295
Score = 38.1 bits (89), Expect = 0.014
Identities = 16/114 (14%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 197 THIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVH 256
+ + T + ++ +++ + ++ G+ + I +P A+
Sbjct: 180 EYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAG 238
Query: 257 PRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTE 310
F T+WG +I R+ D + ++ L P+G+T ++ +++
Sbjct: 239 KNSEIWF-TEWG-ANQIGRITNDNTIQEYQLQTENAEPHGITFG-KDGSVWFAL 289
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation,
complex (protease/inhibitor); 3.00A {Bos taurus} SCOP:
g.3.11.1
Length = 51
Score = 58.1 bits (141), Expect = 5e-11
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC C + C+C G +L D +SC
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSC 36
Score = 51.2 bits (123), Expect = 1e-08
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NGGC C +RC C G +L +D ++C
Sbjct: 1 CSLDNGGCDQFCREER-SEVRCSCAHGYVLGDDSKSC 36
Score = 47.0 bits (112), Expect = 5e-07
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
C C + C C G L D+KSC +
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER 41
Score = 40.4 bits (95), Expect = 9e-05
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C+ DNGGC C + C C
Sbjct: 1 CSLDNGGCDQFCREERS--EVRCSCAHG 26
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens}
PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L*
3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 57.1 bits (138), Expect = 1e-10
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 971 ACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C NG C C + N C+C G L+ +++SC
Sbjct: 1 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
Score = 54.0 bits (130), Expect = 1e-09
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
CN NG C C + + + C C G L E++++C
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
Score = 41.7 bits (98), Expect = 4e-05
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C NG C C K VC C +
Sbjct: 2 CNIKNGRCEQFCKNSADNK-VVCSCTEG 28
Score = 40.9 bits (96), Expect = 8e-05
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSC 429
C C + ++ C C G L+ + KSC
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSC 38
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 56.7 bits (137), Expect = 2e-10
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 54 SPPKKCSPDEHRCT-----TGHCILKTWLCDGIPDCSLGEDERNC 93
S C P + RC+ G C + WLCDG PDC G DE C
Sbjct: 2 SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 46.3 bits (110), Expect = 7e-07
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
G C P W CD DC+ G DE C
Sbjct: 18 PGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 30.9 bits (70), Expect = 0.21
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 122 YFPLHTVRAPRKDCFSKKYLCDGKKHCPRGEEGPDERHC 160
F +C+ + +LCDG C G DE C
Sbjct: 11 QFRCSEPPGAHGECYPQDWLCDGHPDCDDGR---DEWGC 46
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 56.2 bits (136), Expect = 2e-10
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 59 CSPDEHRCTTGH--CILKTWLCDGIPDCSLGEDERNCN 94
C E C CI +W CDG DC GEDE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 46.2 bits (110), Expect = 6e-07
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCP 51
+ CIP W+CD E DC+ GEDE C
Sbjct: 10 AHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 134 DCFSKKYLCDGKKHCPRGEEGPDERHCP 161
C + CDG+ C GE DE +C
Sbjct: 14 QCIPVSWRCDGENDCDSGE---DEENCG 38
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 55.5 bits (134), Expect = 4e-10
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSHLCLRNP-TNFTCACPTGILLSADRRSC 1007
C + NGGC C + T +C C G L AD SC
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
Score = 53.2 bits (128), Expect = 3e-09
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C NGGC C C C G L D +C
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
Score = 40.4 bits (95), Expect = 8e-05
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSC 429
C C + + +C+C G +L D SC
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSC 38
Score = 40.1 bits (94), Expect = 1e-04
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C +NGGC C TK C C +
Sbjct: 2 CVNENGGCEQYCSDHTGTK-RSCRCHEG 28
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 60.3 bits (145), Expect = 4e-10
Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 5/97 (5%)
Query: 14 QEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT--TGHC 71
Q + + + ++ D + C E C C
Sbjct: 9 QNLHIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPEC 68
Query: 72 ILKTWLCDGIPDCSLGEDE--RNC-NKTCDAQKEFSC 105
I CDG DC G DE C ++
Sbjct: 69 IHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG 105
Score = 52.6 bits (125), Expect = 2e-07
Identities = 18/143 (12%), Positives = 26/143 (18%), Gaps = 6/143 (4%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPD-EHRCTTGHCILKTW--LC 78
CI CD E DC G DE + T C
Sbjct: 62 RGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAI 121
Query: 79 DGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVR--APRKDCF 136
I + A + + T F + +
Sbjct: 122 VTITAAH-RKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSE 180
Query: 137 SKKYLCDGKKHCPRGEEGPDERH 159
+CD +
Sbjct: 181 GYGVICDFNLGDDDHADCKIVVP 203
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 55.5 bits (134), Expect = 5e-10
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 4 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 39
Score = 49.3 bits (118), Expect = 8e-08
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ +NG C C + + C C G L ++ + C
Sbjct: 4 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKAC 39
Score = 45.1 bits (107), Expect = 2e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
C C ++ C C G TL+ + K+C +
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP 44
Score = 38.5 bits (90), Expect = 5e-04
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPDD 1318
C+ DNG C C + VC C
Sbjct: 4 CSLDNGDCDQFCHEEQN--SVVCSCARG 29
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 55.6 bits (134), Expect = 6e-10
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C + NGGC C + +C C G L AD SC
Sbjct: 6 LICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 44
Score = 53.3 bits (128), Expect = 4e-09
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C NGGC C C C G L D +C+
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46
Score = 43.2 bits (102), Expect = 2e-05
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 401 CSHICLPNK-HRFTCQCPLGLTLSPDNKSCSESPE 434
C C + + +C+C G +L D SC+ + E
Sbjct: 15 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE 49
Score = 40.2 bits (94), Expect = 2e-04
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
C +NGGC C TK C C +
Sbjct: 6 LICVNENGGCEQYCSDHTGTK-RSCRCHE 33
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 52.4 bits (126), Expect = 4e-09
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 53 ASPPKKCSPDEHRCTTG-HCILKTWLCDGIPDCSLGEDERNC 93
S KCS C C+ + C+G+ DC DE NC
Sbjct: 1 GSQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 46.2 bits (110), Expect = 7e-07
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKC 50
C C+P C+ DC DE C
Sbjct: 13 PCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 28.9 bits (65), Expect = 1.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 135 CFSKKYLCDGKKHCPRGEEGPDERHC 160
C + C+G C DE +C
Sbjct: 20 CLPQLLHCNGVDDCGNQA---DEDNC 42
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 56.1 bits (134), Expect = 1e-08
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 10/139 (7%)
Query: 40 DCEMGEDEMKCPQASPPKKCSPDEHRCTT--GHCILKTWLCDGIPDCSLG--EDERNCNK 95
+ + E + + + C +C CI +CDG DC ED C+
Sbjct: 35 EHFVSEIDARVTKIEGTH-CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93
Query: 96 TCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKYLCDGKKHCPR---GE 152
+ + + R+ F+ + GE
Sbjct: 94 SVVKAGNVFSGTSTWHGCL--AREDHVTRITITASKRRKFFTARIWLRALVESELERHGE 151
Query: 153 EGPDERHCPKRVSLSNKKY 171
+ + ++++
Sbjct: 152 NVTSSFNAKGYYNFASRRL 170
Score = 55.3 bits (132), Expect = 2e-08
Identities = 21/141 (14%), Positives = 28/141 (19%), Gaps = 17/141 (12%)
Query: 23 NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIP 82
CI CD DC DE P C + TW
Sbjct: 62 GNEQECISDLLVCDGHKDCHNAHDE-------DPDVCDTSVVKAGNVFSGTSTW-----H 109
Query: 83 DCSLGEDERNCN--KTCDAQKEFSCMKLAEPRPTEVGSNIKYFPLHTVRAPRKDCFSKKY 140
C ED +K F+ + A F+ +
Sbjct: 110 GCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRR 169
Query: 141 LCDGKKHCPRGEEGPDERHCP 161
L + C
Sbjct: 170 L---ILLPTDDHDDHLAVVCS 187
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 49.2 bits (118), Expect = 3e-07
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRR 1005
N C NNGGCS++C + C CP G L A RR
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR 65
Score = 45.8 bits (109), Expect = 4e-06
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ CS LC+ + C C G L ++C
Sbjct: 73 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C P CS +C+ + + CQC G L P K+C
Sbjct: 72 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C +NNGGCS++C G C+CP G L R C
Sbjct: 32 CLDNNGGCSYVCNDLK-IGYECLCPDGFQLVAQ-RRC 66
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 668 ENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
++ CS LC + + G +C C G L + C
Sbjct: 73 QDPDTCSQLC-VNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 36.5 bits (85), Expect = 0.009
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 1289 NPCAQDNGGCSHLCF-YKGRTKGYVCGCPD 1317
N C +NGGCS++C K GY C CPD
Sbjct: 30 NECLDNNGGCSYVCNDLKI---GYECLCPD 56
Score = 35.0 bits (81), Expect = 0.024
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
CS++C K + C CP G L + C
Sbjct: 39 CSYVCNDLKIGYECLCPDGFQLVAQ-RRC 66
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 1289 NPCAQDNGGCSHLCF-YKGRTKGYVCGCPD 1317
+ C D CS LC +G GY C C +
Sbjct: 70 DECQ-DPDTCSQLCVNLEG---GYKCQCEE 95
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 51.7 bits (124), Expect = 9e-07
Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 29/155 (18%)
Query: 477 ANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIEV 536
D++ D N EI ++ F P G++ID + T+ + +
Sbjct: 67 EEDTILVIDPNNAEILQSSGKNLFYL---------PHGLSID-TDGNYWVTDVALHQVFK 116
Query: 537 SNLDGTYPTLLFW----------QNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGS 586
+ LL + +P D+AV P G ++ +I G
Sbjct: 117 LDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK 176
Query: 587 H---------RHILASDSLKNPTGLAIDLENSRLY 612
P LA+ +L
Sbjct: 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC 211
Score = 42.9 bits (101), Expect = 5e-04
Identities = 38/177 (21%), Positives = 63/177 (35%), Gaps = 29/177 (16%)
Query: 1100 ANNIYYIDSQMHTINVARSDGQHKKILV-----------NDLMEPLAIAVYPRRGLLFYS 1148
N + D +H + + +L+ N +P +AV P G +F S
Sbjct: 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS 160
Query: 1149 HWGLYDNSPTTKIEKVYLDGSYRTVLVEED---------LAFPNELAIDFKQRRLFWADS 1199
Y NS +I + G + T EE + P+ LA+ +L AD
Sbjct: 161 DG--YCNS---RIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215
Query: 1200 TNKRIEYCDFFGRS--RKIVISKVAPYGLSVRQSPGKAFIVE--LYWTDWEAMSVVI 1252
N RI+ + R+I + ++ PG F V Y+ D E + +
Sbjct: 216 ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272
Score = 42.1 bits (99), Expect = 9e-04
Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 39/234 (16%)
Query: 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVV---NDLNRTESIAVDAIGRKIY 797
D+K Y + + D E L N +++D G +
Sbjct: 47 WDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YW 105
Query: 798 WTDMNAQTIMVSDIDGKNAKVLFWLN----------LYRPRSIVVHYGLGLMVWADWSRT 847
TD+ + D K +L +P + V G + +D
Sbjct: 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY-- 163
Query: 848 RLTNNRIEMAHMDGTNRAVF----------ETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
N+RI G + + P LA+ + +L D I
Sbjct: 164 --CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRI 220
Query: 898 -----EYKTLAT-----GRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYRAN 941
+ K + +A+ P L ++ Y+ D + + + N
Sbjct: 221 QCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMN 274
Score = 36.3 bits (84), Expect = 0.050
Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 28/186 (15%)
Query: 217 DFVFWTDTAARRVEFCDLDGKNRKILI----------ANNIDKPRAVIVHPRDAFVFWTD 266
+ TD A +V D K +LI N+ +P V V P VF +D
Sbjct: 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD 161
Query: 267 WGKTPKIERVEMDGS---------NRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIE 317
+I + G + P+ L + D+L + ++ I+
Sbjct: 162 GYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQ 221
Query: 318 SSDLDGSRRQQVITKG--------LPHPFGITL-YEDFVFWTDWHTKSISSANKYTGRNI 368
D + I + + G ++ D N +G I
Sbjct: 222 CFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII 281
Query: 369 KTVHSG 374
Sbjct: 282 DVFKPV 287
Score = 30.6 bits (69), Expect = 4.0
Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 471 AIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTK--------KPAGVAIDWRTN 522
++A D L AD ENG I + I+H + G
Sbjct: 200 SLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA-VNG 258
Query: 523 KLYWTESEYNWIEVSNL-DGTYPTLLFWQN--LSEPRDIAVNP 562
K Y+ + E V N G + P DI +
Sbjct: 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE 301
Score = 30.2 bits (68), Expect = 4.6
Identities = 12/104 (11%), Positives = 23/104 (22%), Gaps = 11/104 (10%)
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLF--------WQNLSEPRDIAVNPI 563
P +A+ ++L + E I+ D +S
Sbjct: 198 PHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257
Query: 564 GGIMYWCSWGDLHKIEMAGMDGSHRHILASDS--LKNPTGLAID 605
G Y+ + M G + P +
Sbjct: 258 GKP-YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS 300
Score = 30.2 bits (68), Expect = 5.0
Identities = 22/155 (14%), Positives = 45/155 (29%), Gaps = 24/155 (15%)
Query: 179 HNVLAVDYHYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKN 238
H+ D+H ++ L W + G V +++D + + + D K
Sbjct: 1 HHHHHHDFHVEEEL-DWPGVYLLPG--QVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKF 56
Query: 239 RKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLT 298
+ ++V + GK + P+GL+
Sbjct: 57 VYQQRGLGPIEEDTILVIDPNNAEILQSSGK-------------------NLFYLPHGLS 97
Query: 299 IDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG 333
ID + + T+ H + D +I
Sbjct: 98 ID-TDGNYWVTDVALHQVFKLDPHSKEGPLLILGR 131
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 49.5 bits (119), Expect = 3e-06
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 12/146 (8%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTK-----KPAGVAIDWRTNKL 524
VA+ +A + + AD N I G F++ + P VA+ + +
Sbjct: 35 VAV---NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDI 91
Query: 525 YWTESEYN-WIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGM 583
TE I++ N G + L PR + V+ G I + ++ +
Sbjct: 92 IVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRI--IVVECKVMRVIIFDQ 149
Query: 584 DGSH-RHILASDSLKNPTGLAIDLEN 608
+G+ S L+ P G+ ++ +
Sbjct: 150 NGNVLHKFGCSKHLEFPNGVVVNDKQ 175
Score = 46.4 bits (111), Expect = 3e-05
Identities = 18/142 (12%), Positives = 48/142 (33%), Gaps = 14/142 (9%)
Query: 470 VAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNT--KKPAGVAIDWRTNKLYWT 527
V + + + + + NG + + + P GV ++ +++ +
Sbjct: 126 VTV---DNKGRIIVVECKVMRVIIFDQNGNVL-HKFGCSKHLEFPNGVVVN-DKQEIFIS 180
Query: 528 ESEYNWIEVSNLDGTYPTLLFWQN---LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMD 584
++ + ++V N +G Y L + P + +N G I + + + D
Sbjct: 181 DNRAHCVKVFNYEGQY--LRQIGGEGITNYPIGVGINSNGEI-LIADNHNNFNLTIFTQD 237
Query: 585 GSH-RHILASDSLKNPTGLAID 605
G + + +A+
Sbjct: 238 GQLISALESKVKHAQCFDVALM 259
Score = 41.4 bits (98), Expect = 0.001
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 13/123 (10%)
Query: 781 LNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGK-----NAKVLFWLNLYRPRSIVVHYG 835
+AV+A I D N I + D +G+ L P + V
Sbjct: 29 FTEPSGVAVNAQND-IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRN 87
Query: 836 LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVF-ETEVIWPSCLAIDYSDNPKLYWVDTSK 894
G ++ + S ++I++ + G F T + P + +D + V+
Sbjct: 88 SGDIIVTERSP----THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR--IIVVECKV 141
Query: 895 HTI 897
+
Sbjct: 142 MRV 144
Score = 39.5 bits (93), Expect = 0.005
Identities = 17/128 (13%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 216 HDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIER 275
D + + +++ + G+ + A + PR V V + + + ++
Sbjct: 89 GDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECK-VMRVII 146
Query: 276 VEMDGSNRKVILTENIF-WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKG- 333
+ +G+ +PNG+ ++ ++ ++ ++ + H ++ + +G +Q+ +G
Sbjct: 147 FDQNGNVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI 205
Query: 334 LPHPFGIT 341
+P G+
Sbjct: 206 TNYPIGVG 213
Score = 37.6 bits (88), Expect = 0.018
Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 10/147 (6%)
Query: 218 FVFWTDTAARRVEFCDLDGKNRKIL-----IANNIDKPRAVIVHPRDAFVFWTDWGKTPK 272
V DT R++ D +G+ + + + P V V + T+ T +
Sbjct: 44 IV--ADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101
Query: 273 IERVEMDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITK 332
I+ G + + P G+T+D + R+ E K + D +G+ +
Sbjct: 102 IQIYNQYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVLHKFGCS 160
Query: 333 G-LPHPFGITL-YEDFVFWTDWHTKSI 357
L P G+ + + +F +D +
Sbjct: 161 KHLEFPNGVVVNDKQEIFISDNRAHCV 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 4e-06
Identities = 90/608 (14%), Positives = 160/608 (26%), Gaps = 272/608 (44%)
Query: 695 LREDRRTCSENPSKFL--LVSQTDKIRQISLDVEYRYPIVLPLRQLKMVAS-VDVDTKNE 751
L+E F L T+ D E P L + L V+S V+ +
Sbjct: 33 LQEQ----------FNKILPEPTEGFAA---DDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
+ + + F+ L ND++ ++A ++ +
Sbjct: 80 F---DQVLNLCLTE--FE---NCYLEGNDIH---ALAAK----------------LLQEN 112
Query: 812 DGKNAKVLFWL-NLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR--AVF- 867
D K + N R + A + +N+ + A +G + A+F
Sbjct: 113 DTTLVKTKELIKNYITARIM-----------AKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 868 ----------------ET-------------EVIWPSCLAIDYSDNPKLY--------WV 890
+T E + L D K++ W+
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLNILEWL 219
Query: 891 DT--SKHTIEYKTLATGRAKRAYAVQSHPY-TLTVLDYYVY------WTDVQHSKIYRAN 941
+ + +Y L + + S P + L +YV +T + +
Sbjct: 220 ENPSNTPDKDY--LLS------IPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 942 KYDVKDIV------------EFAQVDRP------WL-VRAAQNISFPNACGS-------- 974
+ +V F R ++ VR + ++PN
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--AYPNTSLPPSILEDSL 328
Query: 975 NNG-----------GCS---------------------HLCLRN-PTNFTCA-------- 993
N + + L N N +
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 994 ---------CPTGILLSADR-RSCFS-RTREFLLYTSRFGVIRRISLDTADLLPVTLPF- 1041
P+G+ D+ R FS R +F ++RF LPV PF
Sbjct: 389 LNLTLRKAKAPSGL----DQSRIPFSERKLKF---SNRF-------------LPVASPFH 428
Query: 1042 PEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVAN 1101
+ + +LI D+ N+ +F+ D I+ IP
Sbjct: 429 SHLLVP-------ASDLI-NKDLVKNNV-SFNAKD---IQ-IP----------------- 458
Query: 1102 NIYYIDSQMHTINVARSDGQHKKILVNDLMEPLA--IAVYPRRGLLFYSHWGLYDNSPTT 1159
+Y T DG ++L + E + I P W T
Sbjct: 459 -VY------DT-----FDGSDLRVLSGSISERIVDCIIRLP-------VKWETTTQFKAT 499
Query: 1160 KIEKVYLD 1167
I LD
Sbjct: 500 HI----LD 503
Score = 46.2 bits (109), Expect = 1e-04
Identities = 63/467 (13%), Positives = 132/467 (28%), Gaps = 156/467 (33%)
Query: 899 YKTLATGRAKRAYAV---QSHPYTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVD 955
++ + G A + A+ Q + Y+ +++ +Y+ V D+++
Sbjct: 146 FRAVGEGNA-QLVAIFGGQGNTDD--------YFEELR--DLYQTYHVLVGDLIK----- 189
Query: 956 RPWLVRAAQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFL 1015
+A+ L L
Sbjct: 190 -----FSAE------------------TLSE-------------LIRTTLDAEK------ 207
Query: 1016 LYTSRFGVIRRISLDTADLL--PVTLPFPEYMSSIFFDYHYSKNLI-------YFADMRS 1066
++T L+ + L P P +Y+ SI S LI Y +
Sbjct: 208 VFTQ--------GLNILEWLENPSNTPDKDYLLSIPI----SCPLIGVIQLAHYVVTAKL 255
Query: 1067 GNLRTFDMSD-----STRIKPIPL-----MNDTIRDNF------VIDWVANNIYYI--DS 1108
++ + + + D+ ++F I + ++I
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-WESFFVSVRKAITVL----FFIGVRC 310
Query: 1109 QMHTINVARSDGQHKKILVNDLMEP---LAIAVYPRRGLLFYSHWGLYDNS--PTTKIEK 1163
N + + L N+ P L+I+ + + + NS P K +
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ--DYVN-KTNSHLPAGKQVE 367
Query: 1164 VYLDGSYRTVLVE---EDL-AFPNELAIDFKQRRLFWADSTNK-RIEYCDFFGRSRKIVI 1218
+ L + ++V + L L R+ ++ RI + RK+
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTL------RKAKAPSGLDQSRIPF-----SERKLKF 416
Query: 1219 SKV-----APYGLSVRQSP--GKAFIVELYWTD-------WEAMSVVIAREKSDTGQWDV 1264
S +P+ S A +L D + A + I + G D+
Sbjct: 417 SNRFLPVASPF-----HSHLLVPA--SDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-DL 468
Query: 1265 HLIRSNQEDFLNIKAISASKQLTWNPCAQDNGGCSH-LCFYKGRTKG 1310
++ + + + + I + W +H L F G G
Sbjct: 469 RVLSGSISERI-VDCI-IRLPVKWE--TTTQFKATHILDFGPGGASG 511
Score = 32.7 bits (74), Expect = 1.2
Identities = 46/284 (16%), Positives = 83/284 (29%), Gaps = 91/284 (32%)
Query: 572 W--GDLHKIEMAGMDGSHRHILASDSLKNPTGLAI--DLENSRLYWANVGLKTIEFTNLD 627
W D H + G S I+ + NP L I E + N E T +D
Sbjct: 1646 WNRADNHFKDTYGF--SILDIV----INNPVNLTIHFGGEKGKRIRENYSAMIFE-TIVD 1698
Query: 628 G-----------TRKQTLIALHH----LKVMTKV----VGLTDIDIFHRRRSKKTHPCNE 668
G T L T+ + L + F +SK P +
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 669 NNGGCSH-------LCLIA----PKDGIRCV----------CPAGNLLREDRRTCSENPS 707
G H L +A + + V P L R + + NP
Sbjct: 1758 TFAG--HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 708 KFLLVSQTDKIRQI--------SLDVEYRYPIV---LPLRQLKMVAS---VDVDTKNEYI 753
+ + ++ + VE IV + +Q VA+ +DT +
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVE----IVNYNVENQQY--VAAGDLRALDTVTNVL 1869
Query: 754 YWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIY 797
+ I + I+ + +S++++ + ++
Sbjct: 1870 --NFIKLQKIDIIEL---------------QKSLSLEEVEGHLF 1896
Score = 30.8 bits (69), Expect = 4.8
Identities = 45/262 (17%), Positives = 79/262 (30%), Gaps = 80/262 (30%)
Query: 780 DLNRTESIAVDAIGRKIYWTDMNAQT-----IMVSDIDGKNAKVLFWLNLYRPRSIVVHY 834
DL +T A + + W + + DI N P ++ +H+
Sbjct: 1634 DLYKTSKAA-----QDV-WNRADNHFKDTYGFSILDIVINN-----------PVNLTIHF 1676
Query: 835 GLGLMVWADWSRTRLTNNRIEMAH---MDGTNRA--VFETEVIWPSCLAIDYSDNPKLYW 889
G + + R+ N M +DG + +F+ E+ S S+ L
Sbjct: 1677 G------GEKGK-RIRENYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLS- 1727
Query: 890 VDTSKHTIEYKT----LATGRAKRAYAV-QSHPYTLTVLDYYVYWTDVQHSKI--Y---- 938
T ++ T +A A+ +S L D HS + Y
Sbjct: 1728 -AT-----QF-TQPALTLMEKA--AFEDLKSK--GLIPADATF----AGHS-LGEYAALA 1771
Query: 939 -RANKYDVKDIVEFAQVDRPWLVR----AAQNISFPNACGSNNGGCSHLCLRNPTNFTCA 993
A+ ++ +VE +V Q + G +N G + NP +
Sbjct: 1772 SLADVMSIESLVE--------VVFYRGMTMQVAVPRDELGRSNYG---MIAINPGRVAAS 1820
Query: 994 CPTGILLSADRRSCFSRTREFL 1015
L R RT +
Sbjct: 1821 FSQEALQYVVERVG-KRTGWLV 1841
Score = 30.4 bits (68), Expect = 5.9
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 1152 LYDNSPTTKIEKV------YLDGSYRTVLVEEDLAFPNELAIDF---KQRRLFWADSTNK 1202
LY S + V + +Y +++ + P L I F K +R+ S
Sbjct: 1635 LYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 1203 RIEYCDFFGRSRKI 1216
D ++ KI
Sbjct: 1693 FETIVDGKLKTEKI 1706
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 45.5 bits (108), Expect = 7e-06
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NGGC+H CL C+C G L D C
Sbjct: 55 LNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQC 92
Score = 39.3 bits (92), Expect = 0.001
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C+ +NGGC+H CL RC C G L +D C
Sbjct: 57 CSLDNGGCTHYCLEEV-GWRRCSCAPGYKLGDDLLQCHP 94
Score = 37.0 bits (86), Expect = 0.006
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
C+H CL C C G L D C
Sbjct: 64 CTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP 94
Score = 31.2 bits (71), Expect = 0.71
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 1291 CAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
C+ DNGGC+H C C C
Sbjct: 57 CSLDNGGCTHYC--LEEVGWRRCSCAP 81
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo
sapiens}
Length = 87
Score = 44.6 bits (106), Expect = 8e-06
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 970 NACGSNNGGC-SHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C C + +C P +F C CP G + +SC
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC 42
Score = 37.6 bits (88), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 976 NGGCSHLCLRNPTNFTCAC--PTGILLSADRRSC 1007
C+ LC+ P +TC C G L+ D++SC
Sbjct: 50 ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 36.1 bits (84), Expect = 0.008
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 396 CAPKVCSHICLPNKHRFTCQC--PLGLTLSPDNKSC 429
C+ +C+ +C+ +TC C G L+ D KSC
Sbjct: 48 CSENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 34.9 bits (81), Expect = 0.017
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 666 CNENNGGC-SHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C+ C + +C P C CP G ++C
Sbjct: 6 CSLKPSICGTAVCKNIP-GDFECECPEGYRYNLKSKSC 42
Score = 34.6 bits (80), Expect = 0.027
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
+ +C F C+CP G + +KSC
Sbjct: 14 GTAVCKNIPGDFECECPEGYRYNLKSKSC 42
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 46.9 bits (111), Expect = 2e-05
Identities = 19/151 (12%), Positives = 47/151 (31%), Gaps = 14/151 (9%)
Query: 219 VFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVF-WTDWGKTPKIERVE 277
+F T+ + DG + + A K + V + P + V+
Sbjct: 45 IFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102
Query: 278 MDGSNRKVILTENIFWPNGLTIDFEEDRLYWTEAKHHFIESSD----------LDGSRRQ 327
DG+ ++ + + NG+T + + ++ I D +
Sbjct: 103 SDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161
Query: 328 QVITKGLPHPFGITLYEDFVFWTDWHTKSIS 358
P G+ + +F++ ++ +
Sbjct: 162 SNSESVFPAANGLKRFGNFLYVSNTEKMLLL 192
Score = 43.4 bits (102), Expect = 3e-04
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 16/198 (8%)
Query: 753 IYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812
I+ ++ I V G +++ + +A + G + T NA +I V +
Sbjct: 45 IFVTNHEVGEI--VSITPDGNQQIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLV 101
Query: 813 GKNAKVLFWLNLYRPRSI--VVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETE 870
+ V L L + + + AD R + I++ G+
Sbjct: 102 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI--WLIDVVQPSGSIWLEHPML 159
Query: 871 VIWPSCLAIDYS-----DNPKLYWVDTSKHTI-EYKTLATGRA--KRAYAVQSHPYTLTV 922
S + LY +T K + +T + + Q++
Sbjct: 160 ARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAF 219
Query: 923 L-DYYVYWTDVQHSKIYR 939
+ +Y ++ + R
Sbjct: 220 DVEGNLYGATHIYNSVVR 237
Score = 40.3 bits (94), Expect = 0.003
Identities = 21/166 (12%), Positives = 51/166 (30%), Gaps = 16/166 (9%)
Query: 784 TESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMVWAD 843
E++A G I+ T+ I+ DG + + G +V
Sbjct: 34 LENLASAPDGT-IFVTNHEVGEIVSITPDGNQQIHATVEG--KVSGLAFT-SNGDLVATG 89
Query: 844 WSRTRLTNNRIEMAHMDGTNRAVFE-TEVIWPSCLAIDY--------SDNPKLYWVDTSK 894
W+ + + + DGT + + I+ + + S ++ +D +
Sbjct: 90 WNADSIP--VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147
Query: 895 HTIEYKTL-ATGRAKRAYAVQSHPYTLTVLDYYVYWTDVQHSKIYR 939
+ + +V L ++Y ++ + + R
Sbjct: 148 PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLR 193
Score = 38.0 bits (88), Expect = 0.014
Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 15/160 (9%)
Query: 472 IAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLY---WTE 528
+A + +++ + E GEI +G Q + K +G+A L W
Sbjct: 37 LASAP-DGTIFVTNHEVGEIVSITPDGNQQ--IHATVEGKVSGLAFT-SNGDLVATGWNA 92
Query: 529 SEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHR 588
+ + DGT TLL + I + + S
Sbjct: 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS 151
Query: 589 HILASDSLKNPTGLA-------IDLENSRLYWANVGLKTI 621
L L + + + LY +N +
Sbjct: 152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 191
Score = 33.4 bits (76), Expect = 0.41
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 1102 NIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKI 1161
I+ + ++ I DG + + + +A L+ ++ +
Sbjct: 44 TIFVTNHEVGEIVSITPDGNQQIHATVE-GKVSGLAFTSNGDLVA----TGWNADSIPVV 98
Query: 1162 EKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFGRSRKIVIS 1219
V DG+ T+L D F N + + ADS I D S I +
Sbjct: 99 SLVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLE 155
Score = 33.0 bits (75), Expect = 0.55
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 12/137 (8%)
Query: 747 DTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTI 806
D+ I+ D+ + + + + G +Y ++ +
Sbjct: 134 DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLL 191
Query: 807 MVSDID--GKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHMDGTNR 864
+ +D K + ++ G + A N + D +
Sbjct: 192 LRIPVDSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHI-----YNSVVRIAPDRSTT 245
Query: 865 AVFETE--VIWPSCLAI 879
+ + E VI + +A
Sbjct: 246 IIAQAEQGVIGSTAVAF 262
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 42.1 bits (99), Expect = 3e-05
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C HLC + C+C G L DR SC
Sbjct: 13 SGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
Score = 38.2 bits (89), Expect = 5e-04
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 389 QPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430
+ C H+C + C C G L D SC
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 33.6 bits (77), Expect = 0.024
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 666 CNENNGG--------CSHLCLIAPKDGIRCVCPAGNLLREDRRTCS 703
C + C HLC G C C G L+EDR +C
Sbjct: 7 CASRSKSGEEDPQPQCQHLCHNYV-GGYFCSCRPGYELQEDRHSCQ 51
Score = 26.7 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 1289 NPCAQDNGG--------CSHLCF-YKGRTKGYVCGCPD 1317
+ CA + C HLC Y G GY C C
Sbjct: 5 DECASRSKSGEEDPQPQCQHLCHNYVG---GYFCSCRP 39
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 46.3 bits (110), Expect = 5e-05
Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 21/156 (13%)
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTE---- 528
++ L+ DV G I + + + PA + I + +L+
Sbjct: 51 NFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIH-KDGRLFVCYLGDF 108
Query: 529 SEYNWIEVSNLDGTYPTLLFWQNLSEPR--DIAVNPIGGIMYWCSWGDLHKIEMAGM--- 583
I + +G + + D+ + GG + D +
Sbjct: 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF--YF--TDFRGYSTNPLGGV 164
Query: 584 -----DGSHRHILASDSLKNPTGLAIDLENSRLYWA 614
D + + + G+A+ + L+
Sbjct: 165 YYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVT 199
Score = 31.3 bits (71), Expect = 1.9
Identities = 9/46 (19%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1165 YLDGSYRTV-LVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
Y+ +RTV + ++++ N +A+ ++ L+ ++T R+
Sbjct: 166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIAL 211
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 45.4 bits (106), Expect = 1e-04
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 28 CIPAQW---QCD-NEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPD 83
P ++ C + +D C +C D TG C+ + +C+G D
Sbjct: 34 LQPNKFGGTICSGDIWDQASCSSSTTCV---RQAQCGQDFQCKETGRCLKRHLVCNGDQD 90
Query: 84 CSLGEDERNCNKTCDAQKEFSCMK 107
C G DE +C ++ S +
Sbjct: 91 CLDGSDEDDCEDVRAIDEDCSQYE 114
Score = 41.5 bits (96), Expect = 0.002
Identities = 14/78 (17%), Positives = 21/78 (26%)
Query: 21 KCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDG 80
+C TG C+ C+ + DC G DE C + +
Sbjct: 71 QCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILT 130
Query: 81 IPDCSLGEDERNCNKTCD 98
D D C+
Sbjct: 131 QEDAQSVYDASYYGGQCE 148
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain,
disease mutation, extracellular matrix, polymorphism,
cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 43.1 bits (102), Expect = 1e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C S C+ P ++ C CP L+ R C
Sbjct: 6 CLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC 41
Score = 40.4 bits (95), Expect = 9e-04
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCS-HLCLRNPTNFTCACPTGILLSADRRSC 1007
C G C C+ +F C CPTG L+ D R C
Sbjct: 125 CQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 39.7 bits (93), Expect = 0.002
Identities = 2/38 (5%), Positives = 4/38 (10%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ C G +
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVIL 119
Score = 35.4 bits (82), Expect = 0.048
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 975 NNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N + + C+ G+ +S C
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC 79
Score = 35.0 bits (81), Expect = 0.066
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
++++ C G +P
Sbjct: 91 MCPAVNTSEYKILCPGGEGFRPNPITVIL 119
Score = 34.6 bits (80), Expect = 0.097
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 401 CSHICLPNKH-RFTCQCPLGLTLSPDNKSC 429
S C+ N + C CP L+P C
Sbjct: 13 ISGNCV-NTPGSYICDCPPDFELNPTRVGC 41
Score = 33.9 bits (78), Expect = 0.17
Identities = 5/40 (12%), Positives = 7/40 (17%), Gaps = 1/40 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705
N C G + + CS
Sbjct: 44 TRSGNCYLDIRP-RGDNGDTACSNEIGVGVSKASCCCSLG 82
Score = 32.7 bits (75), Expect = 0.38
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C + S C+ P C CP L R C
Sbjct: 6 CLDPTTCISGNCVNTP-GSYICDCPPDFELNPTRVGC 41
Score = 32.3 bits (74), Expect = 0.51
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C+ F C+CP G L+ D + C
Sbjct: 133 QGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 31.6 bits (72), Expect = 0.89
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCS 430
+ C +G+ +S + CS
Sbjct: 51 LDIRPRGDNGDTACSNEIGVGVSKASCCCS 80
Score = 30.4 bits (69), Expect = 2.0
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 666 CNENNGGCS-HLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C E G C C+ +C CP G L ED R C
Sbjct: 125 CQELPGLCQGGKCINTF-GSFQCRCPTGYYLNEDTRVC 161
Score = 30.4 bits (69), Expect = 2.4
Identities = 3/37 (8%), Positives = 4/37 (10%), Gaps = 1/37 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
+ I C G
Sbjct: 84 AWGTPCEMCPAVNTSE-YKILCPGGEGFRPNPITVIL 119
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 44.3 bits (105), Expect = 2e-04
Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 19/165 (11%)
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN 532
AW A +L W+D+ + +GT +V+ T G A+D +L E
Sbjct: 51 AWWEAQRTLVWSDLVGRRVLGWREDGT--VDVLLDATAFTNGNAVD-AQQRLVHCEHGRR 107
Query: 533 WIEVSNLDGTYPTLL---FWQNLSEPRDIAVNPIGGI--------MYWCSWGDLHKIEMA 581
I S+ DG L+ + L+ P D+ V G I + S G E+A
Sbjct: 108 AITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA 167
Query: 582 GM-----DGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTI 621
+ L +P GLA + LY + +
Sbjct: 168 HHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGH 212
Score = 33.1 bits (76), Expect = 0.59
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 19/165 (11%)
Query: 747 DTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTI 806
+ WSD+ + + + + G ++++ T AVDA R + + + I
Sbjct: 53 WEAQRTLVWSDLVGRRV--LGWREDGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAI 109
Query: 807 MVSDIDGKN---AKVLFWLNLYRPRSIVVH----YGLGLMVWADWSRTRLTNNRIEMAHM 859
SD DG+ L P ++V + ++ E+AH
Sbjct: 110 TRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHH 169
Query: 860 -------DGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
DG+ ++ P+ LA D LY T +
Sbjct: 170 SVYRLPPDGSPLQRM-ADLDHPNGLAFS-PDEQTLYVSQTPEQGH 212
Score = 32.0 bits (73), Expect = 1.2
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 1146 FYSHWGLYDNSPTTKIEKVY-LDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204
P VY L + DL PN LA ++ L+ + + +
Sbjct: 153 LRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGH 212
Score = 30.5 bits (69), Expect = 3.8
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 767 RFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDID 812
R G + DL+ +A + +Y + Q +I
Sbjct: 173 RLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 40.7 bits (96), Expect = 2e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGC-SHLCLRNPTNFTCACPTGILLSADRRSC 1007
C + C +C ++ C CP G LS + +C
Sbjct: 49 CQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 33.8 bits (78), Expect = 0.052
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 972 CGSNNGGCSH-LCLRNPTNFTCACPTG-ILLSADRRSC 1007
C + C C+ P +F C C G ++C
Sbjct: 6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
Score = 32.6 bits (75), Expect = 0.11
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 412 FTCQCPLGLTLSPDNKSC 429
+ C+CP G LSP+ +C
Sbjct: 68 YRCECPPGHQLSPNISAC 85
Score = 30.0 bits (68), Expect = 1.0
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 666 CNENNGGC-SHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
C + C +C RC CP G+ L + C
Sbjct: 49 CQRDPLLCRGGVCHNTE-GSYRCECPPGHQLSPNISAC 85
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 41.2 bits (97), Expect = 3e-04
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
N C C T +C CP G +L D C
Sbjct: 42 CQMFCNQTACPADC-DPNTQASCECPEGYILD-DGFIC 77
Score = 40.8 bits (96), Expect = 4e-04
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTG-ILLSADRRSC 1007
N G CS +C P F C C L C
Sbjct: 84 ENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 36.6 bits (85), Expect = 0.010
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 396 CAPKVCSHICLPNKH-RFTCQCPLGLTLSPDNKSCSE 431
C C + C P + C C G P +
Sbjct: 7 CFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQ 43
Score = 36.2 bits (84), Expect = 0.012
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTC 702
N C C P C CP G +L +D C
Sbjct: 44 MFCNQTACPADC--DPNTQASCECPEGYIL-DDGFIC 77
Score = 35.0 bits (81), Expect = 0.036
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 975 NNGGCSHLCL-RNPTNFTCACPTG-ILLSADRRSC 1007
C + C + T++ C C G + + C
Sbjct: 8 FRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRC 42
Score = 33.9 bits (78), Expect = 0.088
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 396 CA-PKVCSHICLPNKHRFTCQCPLGLTLSPDN-KSC 429
C CS +C F C C L+ C
Sbjct: 83 CENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 33.5 bits (77), Expect = 0.11
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 668 ENNGGCSHLCLIAPKDGIRCVCPAG-NLLREDRRTC 702
EN G CS +C P C+C L + C
Sbjct: 84 ENGGFCSGVCHNLP-GTFECICGPDSALAGQIGTDC 118
Score = 33.1 bits (76), Expect = 0.16
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 396 CAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
C C C PN +C+CP G L D C
Sbjct: 46 CNQTACPADCDPNTQ-ASCECPEGYILD-DGFIC 77
Score = 32.0 bits (73), Expect = 0.34
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 667 NE-NNGGCSHLCLIAPKDGIRCVCPAG-NLLREDRRTCS 703
+ C + C + CVC G + + C
Sbjct: 5 DPCFRANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQ 43
Score = 30.8 bits (70), Expect = 0.87
Identities = 5/29 (17%), Positives = 7/29 (24%), Gaps = 3/29 (10%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
+ C C C CP+
Sbjct: 42 CQMFCNQTACPADCDPNT---QASCECPE 67
Score = 28.5 bits (64), Expect = 5.8
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 1291 CAQDNGGCSHLCF-YKGRTKGYVCGCPD 1317
C + G CS +C G + C C
Sbjct: 83 CE-NGGFCSGVCHNLPG---TFECICGP 106
Score = 28.5 bits (64), Expect = 6.1
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKG-YVCGCPD--DLEPNEEC 1325
+PC C + C + + Y+C C + P+E
Sbjct: 5 DPCF--RANCEYQC--QPLDQTSYLCVCAEGFAPIPHEPH 40
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 43.6 bits (102), Expect = 3e-04
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 10/182 (5%)
Query: 173 AIIRNLHNVLAVDY----HYKKNLLVWNTHIVHTGMQSVGSLSVDWVHDFVFWTDTAA-- 226
+ HN L + + V++G+ V ++ D + T+
Sbjct: 143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNN 202
Query: 227 --RRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRK 284
+ + I HP + +++ W ++ R +
Sbjct: 203 DRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETT 261
Query: 285 VILTENIF-WPNGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVITKGLPHPFGITLY 343
+ T W + + Y H+I SD D ++ + G +
Sbjct: 262 PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDW 321
Query: 344 ED 345
D
Sbjct: 322 VD 323
Score = 40.5 bits (94), Expect = 0.003
Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 9/158 (5%)
Query: 744 VDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNA 803
+ D KN + + + F+ V + L++ +I + T+
Sbjct: 142 LSFDPKNHNHLYLVGEQHPTRLIDFE-KEYVSTVYSGLSKVRTICWTHEADSMIITNDQN 200
Query: 804 QTIMVSDI----DGKNAKVLFWLNLYRPRSIVVHYGLGLMVWADWSRTRLTNNRIEMAHM 859
++ + + H G + + W+ ++ R +
Sbjct: 201 NNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQV--FRYDFTTQ 258
Query: 860 DGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
+ T + W + Y V ++H I
Sbjct: 259 ETTPLFTI-QDSGWEFHIQFH-PSGNYAYIVVVNQHYI 294
Score = 38.2 bits (88), Expect = 0.018
Identities = 21/174 (12%), Positives = 45/174 (25%), Gaps = 7/174 (4%)
Query: 465 NVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKL 524
V ++++ N + + E + V K + + +
Sbjct: 135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSM 193
Query: 525 YWTESEYNWIEVSNLDGTYPTLL----FWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEM 580
T + N +N T + +PI G +Y+ SW ++
Sbjct: 194 IITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNA-GQVFR 252
Query: 581 AGMDGSHRHILASDSLKN-PTGLAIDLENSRLYWANVGLKTIEFTNLDGTRKQT 633
L + + + Y V I ++ D K+
Sbjct: 253 YDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL 306
Score = 35.9 bits (82), Expect = 0.086
Identities = 16/176 (9%), Positives = 38/176 (21%), Gaps = 45/176 (25%)
Query: 437 LIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHI 496
L + ++ + + + + + I + + + Y V I R+
Sbjct: 240 LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDY 299
Query: 497 NGT----------------------------FQYNVIRHNTKKPAGVAIDWRTNKLYWTE 528
+ K PA + Y+ +
Sbjct: 300 DWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCD 358
Query: 529 SEYNWIEVSNLDGTYPTLLFWQN----------------LSEPRDIAVNPIGGIMY 568
E + I + G T + + P I + +
Sbjct: 359 RENHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFF 414
Score = 35.1 bits (80), Expect = 0.14
Identities = 29/208 (13%), Positives = 49/208 (23%), Gaps = 53/208 (25%)
Query: 1052 YHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMH 1111
H +YF +G + +D + + + + N Y + H
Sbjct: 233 THPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH 292
Query: 1112 TINVARSDGQHKKILVND--------------------LMEPLAIAVYPRRGLLFYSHWG 1151
I + D + K++ + P S
Sbjct: 293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY 352
Query: 1152 -LY----DNSPTTKIEKVYLDGSYRTV----------------LVEEDLAFPNELAIDFK 1190
Y +N I + G T E P + D +
Sbjct: 353 DFYFCDRENH---CIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEE 409
Query: 1191 QRRLFWADSTNKRIEYCDFFGRSRKIVI 1218
+ F D N+RI RKI
Sbjct: 410 RECFFIGDRENRRI---------RKIGY 428
Score = 33.5 bits (76), Expect = 0.52
Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 5/151 (3%)
Query: 1092 DNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWG 1151
D +N Y+ + H + + ++ + + L + I + ++
Sbjct: 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQ 199
Query: 1152 LYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211
++ P I T L N L++ ++ DF
Sbjct: 200 NNNDRPNNYILTRESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTT 257
Query: 1212 RSRKIVIS---KVAPYGLSVRQSPGKAFIVE 1239
+ + + + + S A+IV
Sbjct: 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 41.5 bits (97), Expect = 0.002
Identities = 20/158 (12%), Positives = 35/158 (22%), Gaps = 28/158 (17%)
Query: 476 SANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIE 535
++Y +G ++ K VA+D LY+ +S N+
Sbjct: 191 EGTHTVYVYMKASGWAPTRIGQLGSTFS------GKIGAVALDETEEWLYFVDSNKNFGR 244
Query: 536 VSNLDGTYPTLL------FWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRH 589
+ + P I Y + DG
Sbjct: 245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV-DSNFYMSDQNL-SSVYKITPDGECEW 302
Query: 590 I-------------LASDSLKNPTGLAIDLENSRLYWA 614
P G+ +D E+ Y
Sbjct: 303 FCGSATQKTVQDGLREEALFAQPNGMTVD-EDGNFYIV 339
Score = 38.4 bits (89), Expect = 0.014
Identities = 20/177 (11%), Positives = 42/177 (23%), Gaps = 40/177 (22%)
Query: 471 AIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKK--------PAGVAIDWRTN 522
A+A + + LY+ D +I+ P + +
Sbjct: 223 AVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYF-VDS 279
Query: 523 KLYWTESEYNWIEVSNLDGTYPTLL------FWQN-------LSEPRDIAVNPIGGIMYW 569
Y ++ + + DG Q+ ++P + V+ G Y
Sbjct: 280 NFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-YI 338
Query: 570 CSWGDLHKIEM-----------AGMDGSHRHI---LASDSLKNPTGLAIDLENSRLY 612
+ + AG I + P + D +
Sbjct: 339 VDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYD-GEGGYW 394
Score = 34.9 bits (80), Expect = 0.16
Identities = 16/163 (9%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 476 SANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYNWIE 535
N+++ ++ + ++ V V D + E +
Sbjct: 139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYV 198
Query: 536 VSNLDGTYPTLLFWQN---LSEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILA 592
G PT + + +A++ +Y + + I
Sbjct: 199 YMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLY-FVDSNKNFGRFNVKTQEVTLIKQ 257
Query: 593 SD------SLKNPTGLAIDLENSRLYWANVGLKTIEFTNLDGT 629
+ + P + +++ Y ++ L ++ DG
Sbjct: 258 LELSGSLGTNPGPYLIYYFVDS-NFYMSDQNLSSVYKITPDGE 299
Score = 30.7 bits (69), Expect = 3.9
Identities = 19/193 (9%), Positives = 38/193 (19%), Gaps = 25/193 (12%)
Query: 1044 YMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNI 1103
YM I N + +R + D+ + + +
Sbjct: 132 YMWGIAAV---GNNTVLAYQRDDPRVRLISVDDNKV---TTVHPGFKGGKPAVTKDKQRV 185
Query: 1104 YYI-DSQMHTINVARSDGQHKKILVNDLM-----EPLAIAVYPRRGLLFYSHWGLYDNSP 1157
Y I HT+ V + L + A+A+ L++
Sbjct: 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN------ 239
Query: 1158 TTKIEKVYLDGSYRTVL------VEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDFFG 1211
+ P + + +D + G
Sbjct: 240 KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF-VDSNFYMSDQNLSSVYKITPDG 298
Query: 1212 RSRKIVISKVAPY 1224
S
Sbjct: 299 ECEWFCGSATQKT 311
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 40.4 bits (94), Expect = 0.003
Identities = 37/222 (16%), Positives = 72/222 (32%), Gaps = 26/222 (11%)
Query: 732 VLPLRQLKMVASVDVDTKNEYI--------YWSDISEKTIERV-RFDMTGRERLVVNDL- 781
+ + K V + T YI Y + I + I + + D+
Sbjct: 68 AIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD 127
Query: 782 ---NRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL-YRPRSIVVHYGLG 837
TE + G+ +Y + Q + ID + KV+ L + +P S+V+
Sbjct: 128 MESGSTEQMVQY--GKYVYVNCWSYQN-RILKIDTETDKVVDELTIGIQPTSLVMDKYNK 184
Query: 838 LMV--WADWSRTRLTNNRIEMAHMDGTNRAVFETEVI----WPSCLAIDYSDNPKLYWVD 891
+ + + + +D V + WPS + ++ + + LYW++
Sbjct: 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD-TLYWIN 243
Query: 892 TSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDY--YVYWTD 931
+ + + Y LTV VY D
Sbjct: 244 NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVAD 285
Score = 36.2 bits (83), Expect = 0.069
Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 31/236 (13%)
Query: 417 PLGLTLSPDNKSCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWES 476
P + D K + D RI + + + ++ +
Sbjct: 86 PRYIHFLSDEK---------AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQM 136
Query: 477 ANDSLYWADVENGEINRAHINGTFQYNVIRHNT--KKPAGVAIDWRTNKLYWTESEYNWI 534
Y NR T V+ T +P + +D + NK++
Sbjct: 137 VQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD-KYNKMWTITDGGYEG 195
Query: 535 EVSNLDGTY------------PTLLFWQNLSEPRDIAVNPIGGIMYWCSWGDLHKIEMAG 582
+ F P ++ +N +YW + D+ ++ +
Sbjct: 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLG-DWPSEVQLNGTRDTLYWIN-NDIWRMPVEA 253
Query: 583 MDGSHRHILASDSLKNPTGLAIDLENSRLYWANVGLKTIEFT----NLDGTRKQTL 634
D GL ++ N +Y A+ + + G
Sbjct: 254 -DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEF 308
Score = 36.2 bits (83), Expect = 0.071
Identities = 22/153 (14%), Positives = 44/153 (28%), Gaps = 15/153 (9%)
Query: 247 IDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIF---WPNGLTIDFEE 303
+DK + + + P + R+ D V WP+ + ++
Sbjct: 179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRI--DAETFTVEKQFKFKLGDWPSEVQLNGTR 236
Query: 304 DRLYWTEAKHHFIESSDLDGSRRQQVITKGL-PHPFGITLYEDFVFWT---DWHTKSISS 359
D LYW + R + + + + V+ D+ + I
Sbjct: 237 DTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVY 296
Query: 360 ANKYTGRNIKTVHSGLHFPMNI-----RSYHPH 387
G+ I + G+ P +H H
Sbjct: 297 RYSPQGKLIDEFYVGI-IPGAFCWKLEHHHHHH 328
Score = 33.9 bits (77), Expect = 0.32
Identities = 12/102 (11%), Positives = 29/102 (28%)
Query: 1060 YFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVANNIYYIDSQMHTINVARSD 1119
+ +L D T K ++ + +Y+I++ + + V
Sbjct: 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADR 255
Query: 1120 GQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKI 1161
+ L + + V P G ++ + Y
Sbjct: 256 VPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR 297
Score = 30.4 bits (68), Expect = 3.5
Identities = 20/163 (12%), Positives = 46/163 (28%), Gaps = 17/163 (10%)
Query: 161 PKRVSLSNKKYTAIIRNLHNVLAVDYHYKKNLLVWNTH---IVHTGMQSVGS----LSVD 213
P + + I + + + +L + + +G + ++
Sbjct: 174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN 233
Query: 214 WVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDAFVFWTDWGKTPKI 273
D ++W + R+ D + + K + V+P + V+ D +
Sbjct: 234 GTRDTLYWINNDIWRMPVEA-DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQ 292
Query: 274 ERVEMDGSNRKVILTENI-FWPNGLTIDFEEDRLYWTEAKHHF 315
V K+I + P + E HH
Sbjct: 293 GIVYRYSPQGKLIDEFYVGIIPGAFC--------WKLEHHHHH 327
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSH-LCLRNPTNFTCACPTGILLSADRRSC 1007
C G C + LC+ +F C CP+G+ L A R C
Sbjct: 110 CEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 34.6 bits (80), Expect = 0.068
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
++ + +C +P +F C C + L + C
Sbjct: 8 ESSPCINGVCKNSPGSFICECSSESTLDPTKTIC 41
Score = 32.7 bits (75), Expect = 0.34
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 396 CA--PKVCSH-ICLPNKH-RFTCQCPLGLTLSPDNKSC 429
C P VC + +C+ N F CQCP G+TL + C
Sbjct: 110 CEVFPGVCKNGLCV-NTRGSFKCQCPSGMTLDATGRIC 146
Score = 31.9 bits (73), Expect = 0.63
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 401 CSHICLPNKH-RFTCQCPLGLTLSPDNKSC 429
+ +C N F C+C TL P C
Sbjct: 13 INGVCK-NSPGSFICECSSESTLDPTKTIC 41
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 666 CNENNGGCSH-LCLIAPKDGI---RCVCPAGNLLREDRRTC 702
C G C + LC+ + +C CP+G L R C
Sbjct: 110 CEVFPGVCKNGLCV----NTRGSFKCQCPSGMTLDATGRIC 146
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease,
EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein,
hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A
{Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB:
1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L*
2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L*
1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Length = 142
Score = 38.5 bits (90), Expect = 0.004
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 970 NACGSN---NGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
+ NGGC C + +C C G L AD SC
Sbjct: 86 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC 127
Score = 35.4 bits (82), Expect = 0.033
Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 665 PCNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
NGGC C C C G L D +C+
Sbjct: 92 VNE--NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 31.5 bits (72), Expect = 0.65
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 396 CAPKVCSHICLPNKH-RFTCQCPLGLTLSPDNKSCSE 431
C C + + +C+C G +L D SC+
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 129
Score = 30.8 bits (70), Expect = 1.2
Identities = 7/29 (24%), Positives = 9/29 (31%), Gaps = 3/29 (10%)
Query: 1289 NPCAQDNGGCSHLCFYKGRTKGYVCGCPD 1317
+NGGC C C C +
Sbjct: 91 CVN--ENGGCEQYC-SDHTGTKRSCRCHE 116
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 39.3 bits (92), Expect = 0.006
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 21/166 (12%)
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKLYWTESEYN 532
+ A ++ ++DV +G H + G ++ + L
Sbjct: 34 VYVPARSAVIFSDVRQNRTWAWSDDGQLS--PEMHPSHHQNGHCLN-KQGHLIACSHGLR 90
Query: 533 WIEVSNL-DGTYPTLL---FWQNLSEPRDIAVNPIGGI-----MYWCSWGDLHKIEMAGM 583
+E G + ++ + L+ P D+ + P G + Y + +
Sbjct: 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL 150
Query: 584 DGSHRHILASDS--------LKNPTGLAIDLENSRLYWANVGLKTI 621
G LA D P GLA + L ++ G
Sbjct: 151 PGRWVFRLAPDGTLSAPIRDRVKPNGLAFL-PSGNLLVSDTGDNAT 195
Score = 34.6 bits (80), Expect = 0.20
Identities = 21/163 (12%), Positives = 46/163 (28%), Gaps = 25/163 (15%)
Query: 752 YIYWSDISEKTIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDI 811
+ +SD+ + + G+ ++ + ++ G + + +
Sbjct: 41 AVIFSDVRQNRT--WAWSDDGQLSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQRE 97
Query: 812 DGKNAKVLF------WLNLYRPRSIVVH-----------YGLGLMVWADWSRTRLTNNRI 854
G + + LN P + + YG+ L +
Sbjct: 98 PGGEWESIADSFEGKKLN--SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155
Query: 855 EMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
DGT A + + P+ LA + L DT +
Sbjct: 156 FRLAPDGTLSAP-IRDRVKPNGLAF--LPSGNLLVSDTGDNAT 195
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 36.4 bits (85), Expect = 0.006
Identities = 8/36 (22%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C N + C F C C G +C
Sbjct: 47 CSVGNPCGNGTCKNVIGGFECTCEEGFEPG-PMMTC 81
Score = 33.7 bits (78), Expect = 0.049
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C + C+ ++ C CP G +L C
Sbjct: 8 CKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNEC 41
Score = 29.9 bits (68), Expect = 1.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 1291 CAQDNGGCSHLCF-YKGRTKGYVCGCPD--DLEPNEEC 1325
C+ N + C G G+ C C + + P C
Sbjct: 47 CSVGNPCGNGTCKNVIG---GFECTCEEGFEPGPMMTC 81
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 39.4 bits (92), Expect = 0.006
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNL----SEPRDIAV 560
KP G I+ T L++ + + + + G + +PR++
Sbjct: 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148
Query: 561 NPIGGIMYWCSWGDLHKIEMAGMDGSHRHILASDSL--KNPTGLAIDLENSRLYWANVG 617
+ +Y G I + +DG + + + K TGLA+D E RLY N
Sbjct: 149 DDATNTVYISGIGKESVIWV--VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD 205
Score = 34.0 bits (78), Expect = 0.33
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 37/166 (22%)
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVL-----------FWLNLYRPRSIVVHYG 835
++ + +++ + + ID K +V + +PR +V
Sbjct: 94 ATINNTTQTLWFGNTVNSAVTA--IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA 151
Query: 836 LGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFETEV---IWPSCLAIDYSDNPKLY---- 888
+ + + I +DG N + + LA+D S+ +LY
Sbjct: 152 TNTVYISGIG----KESVI--WVVDGGNIKLKTAIQNTGKMSTGLALD-SEGKRLYTTNA 204
Query: 889 -----WVDTSKHTIE--YKTLATGRAKRAYAVQSHPYTLTVLDYYV 927
+DT+ + I K L G+ + ++
Sbjct: 205 DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA---FI 247
Score = 33.2 bits (76), Expect = 0.58
Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 13/147 (8%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSN----LDG-TYPTLLFWQNLSEPRDIAVNPIG 564
K +A + N L+ S+ ++ LD T N +P +N
Sbjct: 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTT 100
Query: 565 GIMYWCSWGD--LHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRLYWANVGLKTI 621
+++ + + + I D + + R A+ T+
Sbjct: 101 QTLWFGNTVNSAVTAI-----DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV 155
Query: 622 EFTNLDGTRKQTLIALHHLKVMTKVVG 648
+ + ++ ++K+ T +
Sbjct: 156 YISGIGKESVIWVVDGGNIKLKTAIQN 182
Score = 32.8 bits (75), Expect = 0.66
Identities = 25/215 (11%), Positives = 69/215 (32%), Gaps = 19/215 (8%)
Query: 417 PLGLTLSPDNKS---CSESPEELLIYARQKDLRISQLTEPSPTFETVLPV-MNVKSVVAI 472
P G T++ ++ + + D + ++ + + +
Sbjct: 91 PFGATINNTTQTLWFGNTVNSAVTAI----DAKTGEVKGRLVLDDRKRTEEVRPLQPREL 146
Query: 473 AWESANDSLYWADVENGEINRAHINGTFQY-NVIRHNTKKPAGVAIDWRTNKLYWTESEY 531
+ A +++Y + + + G + I++ K G+A+D +LY T ++
Sbjct: 147 VADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADG 206
Query: 532 NWIEVSNLDGTYPT---LLFWQNLSEPRDIAVNPIGGIMYWCSWGD--LHKIEMAGMDGS 586
I + D + LL +I+++ + + + D
Sbjct: 207 ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVV-----DTR 261
Query: 587 HRHILASDSLKNPTGLAIDLENSRLYWANVGLKTI 621
+ +ILA + + + + Y + +
Sbjct: 262 NGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKV 296
Score = 31.7 bits (72), Expect = 1.9
Identities = 35/232 (15%), Positives = 74/232 (31%), Gaps = 38/232 (16%)
Query: 718 IRQISLDVEYRYPIVLPLRQLKMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERL- 776
++ LD R V PL+ ++VA +T +Y S I ++++ V D +
Sbjct: 124 KGRLVLDDRKRTEEVRPLQPRELVADDATNT----VYISGIGKESVIWV-VDGGNIKLKT 178
Query: 777 -VVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGK-NAKVLFWLNLYRPRSIVVHY 834
+ N + +A+D+ G+++Y T+ + + I + D K ++ + I +
Sbjct: 179 AIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISL 238
Query: 835 -GLGLMVWADWSRTRLTNNRIEMAHMDGTNRAVFET-EVIWPSCLAIDYSDNPKLY---- 888
+ T + + +D N + + + + Y
Sbjct: 239 DTARQRAFI----TDSKAAEVLV--VDTRNGNILAKVAAPESLAVLFN-PARNEAYVTHR 291
Query: 889 ------WVDTSKHTIEYKTLATGRA----------KRAYAVQSHPYTLTVLD 924
+D + + KT T K Y T
Sbjct: 292 QAGKVSVIDAKSYKVV-KTFDTPTHPNSLALSADGKTLYVSVKQKSTKQQEA 342
Score = 30.5 bits (69), Expect = 3.7
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCS 571
+++D + + T+S+ EV +D +L E + NP Y
Sbjct: 233 FINISLDTARQRAFITDSKAA--EVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTH 290
Query: 572 WGDLHKIEMAGMDGSHRHILASDSL-KNPTGLAIDLENSRLYWAN 615
K+ + +D ++ + +P LA+ + LY +
Sbjct: 291 RQA-GKVSV--IDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSV 332
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B*
1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B*
1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B*
2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 37.3 bits (87), Expect = 0.006
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 33.8 bits (78), Expect = 0.13
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 401 CSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
C C ++ C C G TL+ + K+C
Sbjct: 91 CDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 31.1 bits (71), Expect = 0.98
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C+ +NG C C + + C C G L ++ + C
Sbjct: 84 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKACIP 121
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 38.9 bits (91), Expect = 0.007
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 970 NACGS-NNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRT 1011
N C GC H CL ++TC+C G L D + C
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHD 45
Score = 37.0 bits (86), Expect = 0.027
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 393 QSHCAPKV---CSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
++ C P+ C H CLP + +TC C G L D+K C +
Sbjct: 2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 46
Score = 33.1 bits (76), Expect = 0.56
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 666 CN-ENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCS 703
C+ E GC H CL ++ C C G L ED + C
Sbjct: 5 CHPERTDGCQHFCLP-GQESYTCSCAQGYRLGEDHKQCV 42
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo
sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 38.2 bits (89), Expect = 0.008
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
C +NG C C + C+C G L+ + ++C
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Score = 34.7 bits (80), Expect = 0.10
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 391 NYQSHCA--PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
+ C+ C C ++ C C G TL+ + K+C
Sbjct: 79 FTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIP 121
Score = 32.4 bits (74), Expect = 0.67
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSE 704
C+ +NG C C + + C C G L ++ + C
Sbjct: 84 CSLDNGDCDQFCHEEQ-NSVVCSCARGYTLADNGKACIP 121
Score = 29.7 bits (67), Expect = 5.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTG 997
+ C ++ C +TC C G
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEG 70
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 37.5 bits (87), Expect = 0.008
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 973 GSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
+ CSH C + C+CP L D ++C
Sbjct: 122 DFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 34.4 bits (79), Expect = 0.086
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 667 NENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705
+ + CSH C G C CP L +D + C N
Sbjct: 122 DFVDVPCSHFCNNFI-GGYFCSCPPEYFLHDDMKNCGVN 159
Score = 32.1 bits (73), Expect = 0.59
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 372 HSGLHFPMNIRSYHPHRQPNYQSHCAPKV---CSHICLPNKHRFTCQCPLGLTLSPDNKS 428
S + + + C V CSH C + C CP L D K+
Sbjct: 96 KSDFSNEERFTGFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKN 155
Query: 429 C 429
C
Sbjct: 156 C 156
Score = 30.9 bits (70), Expect = 1.3
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 47 EMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
P H C + + + C P+ L +D +NC
Sbjct: 113 VATDINECTDFVDVPCSHFC---NNFIGGYFCSCPPEYFLHDDMKNC 156
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 39.1 bits (90), Expect = 0.009
Identities = 21/210 (10%), Positives = 55/210 (26%), Gaps = 33/210 (15%)
Query: 454 SPTFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPA 513
P+ + + ++ D++N ++ T N IR
Sbjct: 140 DNGRLAFDPLNKDHLYIC---YDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKK 196
Query: 514 GVAIDWRTNKLYWTESEYN--------WIEVSNLDGTYPT---LLFWQNLSEPRDIAVNP 562
+ +I N DGT+ + + ++P
Sbjct: 197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHP 256
Query: 563 IGGIMYWCSWGD--LHKIEMAGM-----------------DGSHRHILASDSLKNPTGLA 603
I G +Y+ S+ + ++++ + + + +
Sbjct: 257 INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIF 316
Query: 604 IDLENSRLYWANVGLKTIEFTNLDGTRKQT 633
I Y+ + ++ D +K+
Sbjct: 317 IHPTGKYAYFGVINNHYFMRSDYDEIKKEF 346
Score = 30.3 bits (67), Expect = 5.0
Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 46/177 (25%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVN----------------------D 780
+ N +Y++ + + R D+ + + N D
Sbjct: 251 GATIHPINGELYFNSYEKGQV--FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308
Query: 781 LNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLYRPRSIVVHYGLGLMV 840
+ I + G+ Y+ +N M SD D I +
Sbjct: 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE----------------IKKEFITPYNF 352
Query: 841 WADWSRTRLTNNRIEMAHMDGTNRAVFETEVIWPSCLAIDYSDNPKLYWVDTSKHTI 897
+ ++ ++ A M+ + VF + + + Y+VD +
Sbjct: 353 VGGYKQSGYRDDVGTEARMNNPCQGVF----VKNPDYTGEEEYD--FYFVDRLNFCV 403
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion;
HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Length = 186
Score = 36.9 bits (84), Expect = 0.018
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 970 NACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
AC + +C + C C G + C
Sbjct: 140 TACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 30.8 bits (68), Expect = 1.8
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 398 PKVCSHICLPNKHRFTCQCPLGLTLSPDNKSC 429
+ +C + + CQC G T + C
Sbjct: 146 CNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC 177
Score = 30.0 bits (66), Expect = 3.9
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 974 SNNGGCSHLCLRNPTNFTCACPTGILLSAD 1003
+G C L + C+C G + + +
Sbjct: 100 GESGECIVEYLSEIQSAGCSCAIGXVPNPE 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 37.8 bits (88), Expect = 0.021
Identities = 15/143 (10%), Positives = 34/143 (23%), Gaps = 13/143 (9%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNL-SEPRDIAVNPIGGIMY 568
AI + + T + P ++ Q S D+ + P
Sbjct: 40 YDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99
Query: 569 WCSWGDLHKIEMAGMDGSHRHILASDSL-KNPTGLAIDLENSRLYWANVGLKTIEFTNLD 627
+ + H M +++ + + G+AI + L +
Sbjct: 100 TVTGLN-HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLI----------LIDRS 148
Query: 628 GTRKQTLIALHHLKVMTKVVGLT 650
+ V+
Sbjct: 149 SANTVRRFKIDADGVLFDTGQEF 171
Score = 34.7 bits (80), Expect = 0.16
Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 23/216 (10%)
Query: 417 PLGLTLSPDNKSCSESPEELLIY-ARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAWE 475
+ ++ D + + Q+ + V S+ +
Sbjct: 42 FVDTAITSDCS---------NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDIT 92
Query: 476 SANDSLYWADVENGEINRAHINGTFQYNVIRHNT--KKPAGVAIDWRTNKLYWTESEY-N 532
+ N N + + I G+AI N L + N
Sbjct: 93 PDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN 151
Query: 533 WIEVSNLDGTYPTLLFWQNL----SEPRDIAVNPIGGIMYWCSWGD--LHKIEMAGMDGS 586
+ +D Q + P +I P G + + + +E +
Sbjct: 152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ--NPE 209
Query: 587 HRHILASDSL-KNPTGLAIDLENSRLYWANVGLKTI 621
+ +L + P + + + S +Y +
Sbjct: 210 NITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDV 245
Score = 30.1 bits (68), Expect = 4.3
Identities = 24/167 (14%), Positives = 51/167 (30%), Gaps = 23/167 (13%)
Query: 995 PTGILLSADRRSCFSRTREFLLYTSRFG--VIRRISLDTADLL--PVTLPFPEYMSSIFF 1050
GI +S + L+ R +RR +D +L
Sbjct: 130 AVGIAISPNGN--------GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNI 181
Query: 1051 DYHYSKNLIYFADMRSGNLRTFDMSD---STRIKPIPLMNDTI-----RDN---FVIDWV 1099
+ N + A++ ++ + + T + + N RD +V+
Sbjct: 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES 241
Query: 1100 ANNIYYIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLF 1146
+++ + T++ +S G I L +A+ LF
Sbjct: 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288
Score = 29.4 bits (66), Expect = 8.8
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 7/58 (12%)
Query: 782 NRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNLY------RPRSIVVH 833
IA+ G + D + V VLF RP +I
Sbjct: 128 YDAVGIAISPNGNGLILID-RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 36.6 bits (84), Expect = 0.042
Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 38/188 (20%)
Query: 471 AIAWESANDSLYWADVENGEINRAHING----TFQYNVIRHNTKK--------------- 511
+ ++S N Y V++G + + F Y N
Sbjct: 23 SFTFDSTNKGFY-TSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGR 81
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQN---LSEPRDIAVNPIGGIMY 568
++ + + N+LY + Y+ V + G L + + V+ GI+Y
Sbjct: 82 TYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVY 141
Query: 569 W-----CSWGDLHKIEMAGMDGSHRHI----------LASDSLKNPTGLAIDLENSRLYW 613
+ + M D + R I L L P G + ++S +
Sbjct: 142 FTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLV 201
Query: 614 ANVGLKTI 621
A I
Sbjct: 202 AEFLSHQI 209
Score = 36.2 bits (83), Expect = 0.057
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 250 PRAVIVHPRDAFVFWTDWGKTPKIERVEMD---------------GSNRKVILTENIFWP 294
AV V R V++TD V+ + +L + + P
Sbjct: 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP 187
Query: 295 NGLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVIT-KGLPHPFGITLYEDFVFW 349
G + + + E H I L+G ++ +P+P I D FW
Sbjct: 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFW 243
Score = 35.4 bits (81), Expect = 0.10
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 736 RQLKMVASVDVDTKNEYIYWSDISEKTIER---------------VRFDM-TGRERLVVN 779
K + +V VD + +Y++D+S +R +++D T L++
Sbjct: 123 VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK 182
Query: 780 DLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVL-FWLNLYRPRSI 830
+L+ V A + + + I+ ++G + + P +I
Sbjct: 183 ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNI 234
Score = 33.5 bits (76), Expect = 0.39
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 25/163 (15%)
Query: 472 IAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKK---PAGVAIDWRTNKLYWTE 528
I++ N+ LY D G + V +D RT +Y+T+
Sbjct: 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD 144
Query: 529 SEYNW--------IEVSNLDG--------TYPTLLFWQNLSEPRDIAVNPIGGIMYWCSW 572
+ ++ S+ G T T L + L P V+ + +
Sbjct: 145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEF 204
Query: 573 GD--LHKIEMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYW 613
+ K + G +L + NP + + + +W
Sbjct: 205 LSHQIVKYWLEGPKKGTAEVLV--KIPNPGNIKRNADGH--FW 243
Score = 31.6 bits (71), Expect = 1.6
Identities = 10/116 (8%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 1089 TIRDNFVIDWVANNIYYIDSQMHTINVARSDGQHKKILVNDLM--EPLAIAVYPRRGLLF 1146
+++D VI + N ++D + ++ ++ + I+ + L+
Sbjct: 36 SVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95
Query: 1147 --YSHWGLYDNSPTTKIEKVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADST 1200
++ L + + +D + +++ D +
Sbjct: 96 IVDCYYHLSVVGSEGGHATQLATSVDG-----VPFKWLYAVTVDQRTGIVYFTDVS 146
Score = 31.6 bits (71), Expect = 1.7
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 23/133 (17%)
Query: 273 IERVEMDGSNRKVILTEN----IFWPNGLTIDFEEDRLYWTEAKHHF--------IESSD 320
+ V +G + + T W +T+D +Y+T+ + +++SD
Sbjct: 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD 162
Query: 321 LDG--------SRRQQVITKGLPHPFGITLY--EDFVFWTDWHTKSISSAN-KYTGRNIK 369
G ++ ++ K L P G + FV ++ + I + +
Sbjct: 163 KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTA 222
Query: 370 TVHSGLHFPMNIR 382
V + P NI+
Sbjct: 223 EVLVKIPNPGNIK 235
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 36.7 bits (85), Expect = 0.047
Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 32/160 (20%)
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL-YRPRSIVVHYGLGLMVWADWS 845
+ G K+Y + ++ + + ID V+ + P+ + V G V+
Sbjct: 37 AVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPD-GKQVYV--- 90
Query: 846 RTRLTNNRIEMAHMDGTNRAVFET-EV-IWPSCLAID------Y---SDNPKLYWVDTSK 894
T + ++ + + +D T+ V T + P LA+ Y + + + ++T
Sbjct: 91 -TNMASSTL--SVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147
Query: 895 HTIEYKTLATGRA----------KRAYAVQSHPYTLTVLD 924
+ T++ GR+ + Y +++V+D
Sbjct: 148 KAVI-NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID 186
Score = 34.8 bits (80), Expect = 0.17
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 19/116 (16%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNLSEPRDIAVNPIG 564
P G I K+Y + N + + + T P S P+ +AV+P G
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSSPQGVAVSPDG 85
Query: 565 GIMYWCSWGD--LHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRLYWANVG 617
+Y + L I D + + + + K+P GLA+ + +LY N G
Sbjct: 86 KQVYVTNMASSTLSVI-----DTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG 136
Score = 34.8 bits (80), Expect = 0.18
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 512 PAGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNLSEPRDIAVNPIGGI 566
P GVA+ ++Y T + + V + GT T P +A++P G
Sbjct: 76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG------KSPLGLALSPDGKK 129
Query: 567 MYWCSWGD--LHKIEMAGMDGSHRHILASDSL-KNPTGLAIDLENSRLYWANVGLKTI 621
+Y + GD + I + + ++ + S+ ++P G+A+ + +++Y AN +I
Sbjct: 130 LYVTNNGDKTVSVI-----NTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI 182
Score = 30.9 bits (70), Expect = 3.1
Identities = 13/70 (18%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 553 SEPRDIAVNPIGGIMYWCSWGDLHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRL 611
S P ++P G +Y + + + + +D + +++A+ + +P G+A+ + ++
Sbjct: 32 SNPMGAVISPDGTKVYVANAHS-NDVSI--IDTATNNVIATVPAGSSPQGVAVSPDGKQV 88
Query: 612 YWANVGLKTI 621
Y N+ T+
Sbjct: 89 YVTNMASSTL 98
Score = 30.5 bits (69), Expect = 4.1
Identities = 36/190 (18%), Positives = 72/190 (37%), Gaps = 18/190 (9%)
Query: 739 KMVASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDL---NRTESIAVDAIGRK 795
K + + + +Y ++ +KT+ + + + V+N + + IAV G K
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVI--NTVTKA--VINTVSVGRSPKGIAVTPDGTK 171
Query: 796 IYWTDMNAQTIMVSDIDGKNAKVLFWLNL-YRPRSIVVHYGLGLMVWADWSRTRLTNNRI 854
+Y + ++ +I V ID V+ + + P I V+ + + N +
Sbjct: 172 VYVANFDSMSISV--IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK---YFNTV 226
Query: 855 EMAHMDGTNRAVFET-EV-IWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYA 912
M +D + V P+ +A+ D K+Y + +T+ AT A
Sbjct: 227 SM--IDTGTNKITARIPVGPDPAGIAVT-PDGKKVYVALSFXNTVSVIDTATNTITATMA 283
Query: 913 VQSHPYTLTV 922
V +PY
Sbjct: 284 VGKNPYASGQ 293
Score = 30.1 bits (68), Expect = 5.2
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 13/118 (11%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNLSEPRDIAVNPIG 564
+ P G+A+ K+Y + I V + T + P IAVNP G
Sbjct: 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE------AAPSGIAVNPEG 211
Query: 565 GIMYWCSWGDLHKIEMAGMDGSHRHILAS-DSLKNPTGLAIDLENSRLYWANVGLKTI 621
Y + + ++ +D I A +P G+A+ + ++Y A T+
Sbjct: 212 TKAYVTNVDK-YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTV 268
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 36.7 bits (85), Expect = 0.048
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 13 LQEIPQYKKC-----NRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCT 67
L + +C CI +CD + E+ + R
Sbjct: 28 LGALTALPRCGTGADQGKKVCIV-YHRCDGVTNTVTPEEVINTTGEGIFDI------REN 80
Query: 68 TGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
C +C G+P+ + K C
Sbjct: 81 ANECESYLDVCCGLPEGGVLPTPSPTPPVVPVLKPSFC 118
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex,
blood coagulation, CL PAIR of basic residues, disulfide
bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Length = 317
Score = 36.6 bits (85), Expect = 0.051
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 972 CGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTR 1012
GC H CL ++TC+C G L D + C +
Sbjct: 47 HPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 87
Score = 32.4 bits (74), Expect = 0.95
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSENP 706
E GC H CL ++ C C G L ED + C +
Sbjct: 47 HPERTDGCQHFCLPG-QESYTCSCAQGYRLGEDHKQCVPHD 86
Score = 32.0 bits (73), Expect = 1.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 390 PNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSESPE 434
N C H CLP + +TC C G L D+K C +
Sbjct: 43 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQ 87
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 35.9 bits (82), Expect = 0.055
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 745 DVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDLNRT---------ESIAVDAIGRK 795
+ K + SD K +R ++G E + E+IA++ +
Sbjct: 125 SSEVKENSVD-SDDKAKVPPLIRI-VSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNE 182
Query: 796 IYWTDMNAQTIMVSDIDGKNAKVLFW 821
I +++ N +D N K FW
Sbjct: 183 ILFSENNDMDNNNDGVDELNKKCTFW 208
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 36.0 bits (83), Expect = 0.080
Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 16/122 (13%)
Query: 510 KKPAGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNLSEPRDIAVNPIG 564
K + D + +Y + I V + + PR + ++ G
Sbjct: 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI------GLPRGLLLSKDG 265
Query: 565 GIMYWCSWGDLHKIEMAGM----DGSHRHILAS-DSLKNPTGLAIDLENSRLYWANVGLK 619
+Y + ++ G ++ + N + +++Y +++
Sbjct: 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS 325
Query: 620 TI 621
I
Sbjct: 326 KI 327
Score = 31.4 bits (71), Expect = 2.5
Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 6/139 (4%)
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL-YRPRSIVVHYGLGLMVWADWS 845
+ D I +Y ++ ++ I V ID K + + PR +++ + A +S
Sbjct: 217 LLYDPIRDLVYCSNWISEDISV--IDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS 274
Query: 846 RTRLTNNRIEMAHMDGTNRAVFET-EV-IWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLA 903
+ + + + +T + + K+Y D IE L
Sbjct: 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLK 333
Query: 904 TGRAKRAYAVQSHPYTLTV 922
+ +++ V P T+ +
Sbjct: 334 EKKVQKSIPVFDKPNTIAL 352
Score = 29.9 bits (67), Expect = 7.2
Identities = 57/426 (13%), Positives = 118/426 (27%), Gaps = 72/426 (16%)
Query: 244 ANNIDKPRAVIVHPRDAFVFWTDWGKTPKIERVEMDGSNRKVILTENIFW--------PN 295
N + +HP V P + +EMD + V + ++ +
Sbjct: 24 EKNGTEIVKFSIHPYKGTVIRLGEEILP-FKVLEMDKNIALVEMAIPVYKDEKEIELKLS 82
Query: 296 GLTIDFEEDRLYWTEAKHHFIESSDLDGSRRQQVIT-KGLPHPFGITLYED-FVFWTDWH 353
R+ E + + + D +G + + K P + ++ +
Sbjct: 83 SPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLE 142
Query: 354 TKSISSANKYTGRNIKTVHSG---LHFPMNIRSYHPHRQ----PNYQSHC-------APK 399
+ + + +G+ ++ P Q++
Sbjct: 143 DEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202
Query: 400 VCSHICLPNKHRFTCQCPLGLTLSPDNK---SCSESPEELLIYARQKDLRISQL-TEPSP 455
+ + L K L P + E++ + R+ L I + P
Sbjct: 203 YKATVDLTGKW------SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLP 256
Query: 456 TFETVLPVMN---VKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKP 512
+ + A ES L ++ ++ I
Sbjct: 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-IDTIGPP----------GNK 305
Query: 513 AGVAIDWRTNKLYWTESEYNWIEVSNLD-----GTYPTLLFWQNLSEPRDIAVNPIGGIM 567
+ NK+Y ++ + IEV +L + P +P IA++P G +
Sbjct: 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF------DKPNTIALSPDGKYL 359
Query: 568 YWCSWGDLHKIEMAGMDGSHRHILA---SDSLK---------NPTGLAIDLENSRLYWAN 615
Y G H E G + + + PTGL + +N L ++
Sbjct: 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISD 419
Query: 616 VGLKTI 621
I
Sbjct: 420 FLDHQI 425
Score = 29.5 bits (66), Expect = 8.5
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 7/76 (9%)
Query: 741 VASVDVDTKNEYIYWSDISEKTIERVRFDMTGRERLVVNDL---NRTESIAVDAIGRKIY 797
V+ + E + + + D T V N+ + V R +
Sbjct: 361 VSCRGPNHPTEGYLKKGLVLGKVYVI--DTTTDT--VKEFWEAGNQPTGLDVSPDNRYLV 416
Query: 798 WTDMNAQTIMVSDIDG 813
+D I V DG
Sbjct: 417 ISDFLDHQIRVYRRDG 432
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 33.1 bits (75), Expect = 0.10
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 665 PCNENNGGCSH--LCLIAPKDGIRCVCPAGN-LLREDRRTCSEN 705
C + NGGC+ C + K+ I C C + CS +
Sbjct: 48 TCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCSHH 91
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 33.9 bits (78), Expect = 0.11
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 666 CNENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRT---CSENP 706
CN NG C C + C C G L D+++ P
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPFP 131
Score = 33.9 bits (78), Expect = 0.14
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 972 CGSNNGGCSHLCLRNPTN-FTCACPTGILLSADRRSC 1007
C NG C C + C+C TG L+ D++SC
Sbjct: 88 CNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSC 124
Score = 30.4 bits (69), Expect = 1.9
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 401 CSHICLPNKH-RFTCQCPLGLTLSPDNKSCSE 431
C C + C C G L+PD KSC
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLAPDQKSCKP 126
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 33.8 bits (77), Expect = 0.21
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 383 SYHPHRQPNYQSHCAPKVCSHICLPNKHRFTCQCPLGLTLSPDNKSCSE 431
+ C H C + F C C G L + ++CSE
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 33.4 bits (76), Expect = 0.24
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 667 NENNGGCSHLCLIAPKDGIRCVCPAGNLLREDRRTCSEN 705
C H C G C C AG +L ++RTCSE
Sbjct: 131 PGEAPTCDHHCHNHL-GGFYCSCRAGYVLHRNKRTCSEQ 168
Score = 32.2 bits (73), Expect = 0.55
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 951 FAQVDRPWLVRAAQNISFPNACGSNNG---GCSHLCLRNPTNFTCACPTGILLSADRRSC 1007
++ A + C G C H C + F C+C G +L ++R+C
Sbjct: 106 YSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTC 165
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 33.5 bits (76), Expect = 0.28
Identities = 33/140 (23%), Positives = 45/140 (32%), Gaps = 18/140 (12%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGE----DEMKCPQASPPKK----CSPDEHRCTTGHCIL 73
C A +C ++ DC CP AS PK C+ C G C
Sbjct: 57 CTAHCAFKSKTEKCRDDSDCAKEGICNGITALCP-ASDPKPNFTDCNRHTQVCINGQCAG 115
Query: 74 KTWLCDGIPDCSL-GEDERNCNKTCDAQKEFSCMKLAEP---RPTEVGSNIKYFPLHTVR 129
G+ +C+ D ++ + C CMK EP T KYF T+
Sbjct: 116 SICEKHGLEECTCASSDGKDDKELCHV----CCMKKMEPSTCASTGSVQWNKYFLGRTIT 171
Query: 130 APR-KDCFSKKYLCDGKKHC 148
C + CD C
Sbjct: 172 LQPGSPCNDFRGYCDVFMRC 191
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 34.1 bits (78), Expect = 0.37
Identities = 9/73 (12%), Positives = 14/73 (19%), Gaps = 2/73 (2%)
Query: 26 GACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILK-TWLCDGIPDC 84
G C + E + G DE + + C P
Sbjct: 86 GYCDLNYCEEAVEEETGDGLDEDSDRAIEGAT-ATSEYQTFFNPATFGSGEADCGLRPLF 144
Query: 85 SLGEDERNCNKTC 97
E +
Sbjct: 145 EKKSLEDKTEREL 157
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 33.6 bits (77), Expect = 0.42
Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 23/163 (14%)
Query: 1057 NLIYFADMRSGNLRTFDMSDSTRIKPIPLMNDTIRDNFVIDWVA---NNIYYIDSQMHTI 1113
I D+++G + IP RD + +VA + + +
Sbjct: 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL-FVADMRLGLLVVQTDGTFE 104
Query: 1114 NVARSDGQHKKIL-VNDLMEPLAIAVYPRRGLLFYS------HWGLYDNSPTTKIEKVY- 1165
+A+ D + +++ ND + G L+ + Y S K +Y
Sbjct: 105 EIAKKDSEGRRMQGCNDC-------AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC 157
Query: 1166 LDGSYRTVLVEEDLAFPNELAI----DFKQRRLFWADSTNKRI 1204
+ + V+ FPN +A+ D + +L A++ K++
Sbjct: 158 FTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Score = 30.1 bits (68), Expect = 4.4
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 8/79 (10%)
Query: 743 SVDVDTKNEYIYWSDISEKTIERVRFDMTGR--ERLVVNDLNRTE-----SIAVDAIGRK 795
D + + ++ K + + + V + T + D
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN- 238
Query: 796 IYWTDMNAQTIMVSDIDGK 814
+ + + I V DG
Sbjct: 239 LLVANWGSSHIEVFGPDGG 257
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A
2box_A
Length = 143
Score = 32.1 bits (73), Expect = 0.46
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 972 CGSNNGGCSH--LCLRNPTNFTCACPTGILLSADRRSC 1007
C S C +C +++C C G +
Sbjct: 99 CSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNN 136
Score = 30.9 bits (70), Expect = 1.3
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 975 NNGGCSHLCLRNPT---NFTCACPTG-----ILLSADRRSC 1007
++ GC+ C ++ + C C G +++ +C
Sbjct: 1 DSRGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
Score = 29.8 bits (67), Expect = 2.8
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 401 CSHICLPNKH---RFTCQCPLG-----LTLSPDNKSC 429
C+ C + C+C G ++ ++C
Sbjct: 5 CARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETC 41
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 33.7 bits (77), Expect = 0.49
Identities = 25/167 (14%), Positives = 36/167 (21%), Gaps = 31/167 (18%)
Query: 18 QYKKCNRTGACIPAQWQCDNEFD------CEMGEDEMKCPQASPPKKCSPDEHRCTTGHC 71
++ K ++ C+ + G C S P C
Sbjct: 245 EWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRH-SIPVFCHSS--------F 295
Query: 72 ILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLA---EPRPTEVGSNIKYFPLHTV 128
T D + C K C C G Y L +
Sbjct: 296 YHDTDFLGEELDIVAAKSHEACQKLCT--NAVRCQFFTYTPAQASCNEGKGKCYLKLSSN 353
Query: 129 RAPRKDCFSKKYLCDGKKHCPRGEEGPDERHCPKRVSLSNKKYTAII 175
+P K H G G R C + K I+
Sbjct: 354 GSPTKIL-----------HGRGGISGYTLRLCKMDNECTTKIKPRIV 389
Score = 33.7 bits (77), Expect = 0.50
Identities = 12/118 (10%), Positives = 24/118 (20%), Gaps = 1/118 (0%)
Query: 4 SVPVLWVGYLQEIPQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPK-KCSPD 62
L LQ + E D + C + +C
Sbjct: 271 KSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFF 330
Query: 63 EHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSCMKLAEPRPTEVGSNI 120
+ C C + + + + K+ T++ I
Sbjct: 331 TYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRI 388
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 33.0 bits (76), Expect = 0.54
Identities = 4/52 (7%), Positives = 18/52 (34%)
Query: 767 RFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKV 818
+ + ++ + + + Y+ D + ++ D D + ++
Sbjct: 134 SLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185
Score = 31.5 bits (72), Expect = 1.6
Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 1163 KVYLDGSYRTVLVEEDLAFPNELAIDFKQRRLFWADSTNKRIEYCDF 1209
++ D + + + N L + ++ DS + ++ D+
Sbjct: 134 SLFPDHHVKKYF--DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY 178
Score = 30.3 bits (69), Expect = 3.9
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 474 WESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGVAIDWRTNKL 524
WE ++SL + D+ ++ R V R P ++
Sbjct: 20 WEEVSNSLLFVDIPAKKVCRWDSFTK---QVQRVTMDAPVSSVALRQSGGY 67
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 33.7 bits (76), Expect = 0.57
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 40 DCEMGEDEMKCPQASPP--KKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNCNKTC 97
+ + P + ++ RC +G CI + C+G DC DER+C +T
Sbjct: 97 TAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTK 156
Query: 98 DAQKEFSCM 106
Sbjct: 157 AVCTRKYNP 165
Score = 29.8 bits (66), Expect = 6.9
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 10/89 (11%)
Query: 17 PQYKKCNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPP----KKCSPDEHRCTTGHCI 72
+ K +G CI + +C+ E DC DE C + P G
Sbjct: 119 CKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQLMGNGFHF 178
Query: 73 LKTWLCDGIPDCSLGEDERNCNKTCDAQK 101
L + D C K
Sbjct: 179 LAGEPRGEVL------DNSFTGGICKTVK 201
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.8 bits (69), Expect = 0.76
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 661 KKTHPCNENNGGCSHL--CLIAPKDGIRCVCPAGN-LLREDRRTCSEN 705
+ C ENNGGC+ C + K + C C + CS +
Sbjct: 49 PASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFCSSS 96
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 30.1 bits (67), Expect = 1.4
Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 665 PCNENNGGCSH--LCLIAP----KDGIRCVCPAG-NLLREDRRTCSEN 705
CNENNGGC C I C C + D CS +
Sbjct: 48 TCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSHH 95
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Length = 1158
Score = 32.2 bits (72), Expect = 1.4
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 1/126 (0%)
Query: 866 VFETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATGRAKRAYAVQSHPYTLTVLDY 925
V E EV ++ + L ++++ E+ T R + + L
Sbjct: 879 VAEKEVKGA-VYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGD 937
Query: 926 YVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQNISFPNACGSNNGGCSHLCLR 985
++ D+ S + A K + E A+ P + A + + N G+ N +C +
Sbjct: 938 FILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK 997
Query: 986 NPTNFT 991
+ T
Sbjct: 998 DSAATT 1003
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase,
tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR
PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A*
2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A*
2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A*
2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Length = 361
Score = 31.4 bits (70), Expect = 1.9
Identities = 31/245 (12%), Positives = 66/245 (26%), Gaps = 29/245 (11%)
Query: 399 KVCSHICLPNKHRFTCQCPLGLTLSPDNK---SCSESPEELLIYARQKDLRISQLTEPSP 455
I LP K + D K + SP + + +
Sbjct: 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA 151
Query: 456 TFETVLPVMNVKSVVAIAWESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKKPAGV 515
+V+P N + +++ F P +
Sbjct: 152 GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF------SVKDDPIFI 205
Query: 516 AIDWRTNKLYWTESEYNWIEVSNLDGTYPTLLFWQNLSEPRD------------IAVNPI 563
A +K ++ S Y + ++ G + +L D + ++
Sbjct: 206 APALDKDKAHFV-SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264
Query: 564 GGIMYWCSWGDLHKI-------EMAGMDGSHRHILASDSLKNPTGLAIDLENSRLYWANV 616
G MY D + E+ MD + +A ++ + ID + + + +
Sbjct: 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG 324
Query: 617 GLKTI 621
G +
Sbjct: 325 GNVNV 329
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 31.3 bits (70), Expect = 2.1
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 762 TIERVRFDMTGRERLVVNDLNRTESIAVDAIGRKIYWTDMNAQTIM-VSDIDGKNAKVLF 820
I+ V + + V+ I +DA +Y + M++ ++ + D N ++
Sbjct: 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234
Query: 821 WLNLYRPRSIVVHYGLGLMVWADWSR---TRLTNNRIEMAHMDGTNRAVF--ETEVIWPS 875
+ + L ++ I + + + ++ W
Sbjct: 235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTD 294
Query: 876 CLAIDYSDNPKLYWVDTSKH 895
+ LY+ H
Sbjct: 295 SFNFG--SDGYLYFDCNQLH 312
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 31.3 bits (70), Expect = 2.1
Identities = 26/194 (13%), Positives = 46/194 (23%), Gaps = 35/194 (18%)
Query: 787 IAVDAIGRKIYWTDMNAQTIMVSDIDGKNAKVLFWLNL--------YRPRSIVVH----- 833
+ R Y + + I ID K F NL S +
Sbjct: 48 AMMAPDNRTAYVLNNHYGDIYG--IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE 105
Query: 834 -YGLGLMVWADWSRTRLTNNRIEM-AHMDGTNRAVFETEVIWPSCLAIDYSDNPKLY--- 888
Y + R+E+ + DG T + + +D+ LY
Sbjct: 106 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 165
Query: 889 ----WVDTSKHTIEYKTLATGR----------AKRAYAVQSHPYTLTVLDYYVYWTDVQH 934
+D L + QS + ++L + D +
Sbjct: 166 PDIYKMDVKTGKYT-VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224
Query: 935 SKIYRANKYDVKDI 948
Y +
Sbjct: 225 DPATADLLYGYLSV 238
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold,
hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A*
3srg_A*
Length = 355
Score = 30.9 bits (69), Expect = 2.6
Identities = 16/129 (12%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 979 CSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSR-FGVIRRISLDTADLLPV 1037
H L + + P + D + + ++ + + S + ++
Sbjct: 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE 218
Query: 1038 TLPFPEYMSSIFFDYHYSKNLIYFADMRSGNLRTFDMSDSTRIKPIPLMN-DTIRDNFVI 1096
F + I +Y A++ + + ++ + + P+ +++ DT+ DN +
Sbjct: 219 GFDFA---NGINISP--DGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISV 273
Query: 1097 DWVANNIYY 1105
D V +++
Sbjct: 274 DPVTGDLWV 282
Score = 30.5 bits (68), Expect = 4.3
Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 31/169 (18%)
Query: 1059 IYFADMRSGNLRTFDM------SDSTRIKPIPLMNDTIRDNFVIDWVANN--------IY 1104
I D+ ++ D + P + DN V V N+ ++
Sbjct: 85 ILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVF 144
Query: 1105 YIDSQMHTINVARSDGQHKKILVNDLMEPLAIAVYPRRGLLFYSHWGLYDNSPTTKIEKV 1164
+ ++ ++ VND+ V + ++ Y P K ++
Sbjct: 145 KFQEEEKSLLHLKTIRHKLLPSVNDI-------VAVGPEHFYATNDH-YFIDPYLKSWEM 196
Query: 1165 YLDGSYRTVL---------VEEDLAFPNELAIDFKQRRLFWADSTNKRI 1204
+L ++ V V E F N + I + ++ A+ +I
Sbjct: 197 HLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKI 245
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A
{Homo sapiens}
Length = 361
Score = 31.1 bits (70), Expect = 2.7
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 963 AQNISFPNACGSNNGGCSHLCLRNPTNFTCACPTGILLSADRRSCFSRTREFLLYTSRFG 1022
A ++ C H C + C+C G +L D R+C + L T R G
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLF-TQRTG 176
Query: 1023 VI 1024
VI
Sbjct: 177 VI 178
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 30.6 bits (70), Expect = 3.1
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 867 FETEVIWPSCLAIDYSDNPKLYWVDTSKHTIEYKTLATG-RAKR 909
F T + + +D+S P + D+ + LA G AKR
Sbjct: 83 FGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKR 126
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 30.6 bits (68), Expect = 3.6
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 42 EMGEDEMKCPQASPPKKCSPDEHRC-TTGHCILKTWLCDGIPDCSLGEDERNCNKTCDAQ 100
E E + + C TG C+ + LC+G DC DE NC +
Sbjct: 49 SDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKC 108
Query: 101 K 101
+
Sbjct: 109 Q 109
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 30.0 bits (67), Expect = 3.7
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 11/94 (11%)
Query: 21 KCNRTGACIPAQWQCDNEF---DCEMGEDEMKCPQASPPKKCSPDEH------RCTTGHC 71
C+ G +CD + +CE + + + C G C
Sbjct: 97 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 156
Query: 72 ILKTWLCDGIPDCSLGEDERNCNKTCDAQKEFSC 105
+ T D G+ C+ C
Sbjct: 157 LCHT--SDVPGKLIYGQYCECDTINCERYNGQVC 188
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown
function; HET: HEB; NMR {Synechococcus SP}
Length = 123
Score = 29.1 bits (65), Expect = 3.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 361 NKYTGRNIKTVHSGLHFPMNIRSYH 385
+++ GR+++ H L + H
Sbjct: 58 DRFPGRSMRAAHQDLVENAGLTDVH 82
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP:
b.68.6.1
Length = 326
Score = 30.4 bits (69), Expect = 4.0
Identities = 4/25 (16%), Positives = 14/25 (56%)
Query: 474 WESANDSLYWADVENGEINRAHING 498
++ A+ + +W ++ E++ H+
Sbjct: 56 FDPASGTAWWFNILERELHELHLAS 80
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
PDB: 3t81_A 3t8l_A
Length = 608
Score = 30.4 bits (68), Expect = 4.9
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 3/100 (3%)
Query: 201 HTGMQSVGSLSVDWVHDFVFWTDTAARRVEFCDLDGKNRKILIANNIDKPRAVIVHPRDA 260
G +G ++ D V + D G+ +D P + +
Sbjct: 333 RLGRSDLGLIAAGRRADIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGS 392
Query: 261 FVFWTDWGKTPKIERVEMDGSNRKVILTENIFWPNGLTID 300
+ V+ G+ ++ + + +
Sbjct: 393 MKLPL---RMANDFLVKSQGAKVRLATIDRPRFTQWGETE 429
>1w0r_A Properdin, factor P; X-RAY scattering, analytical
ultracentrifugation, complement, thrombospondin type I
repeats, constrained modelling; NMR {Homo sapiens} PDB:
1w0s_A
Length = 442
Score = 30.0 bits (67), Expect = 5.3
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 41 CEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDER 91
M E + + + E + + C +P C E+E
Sbjct: 391 VSMVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEE 441
>3fju_B Carboxypeptidase A inhibitor; ascariasis, HOST resistance,
metallocarboxypeptidase inhibit immunolocalization,
hydrolase; 1.60A {Ascaris suum}
Length = 65
Score = 27.3 bits (60), Expect = 5.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 34 QCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGIPDCSLGEDERNC 93
+C ++ DC GE KC Q + + RC H + C DC + E+ C
Sbjct: 3 KCLSDTDCTNGE---KCVQKNKICSTIVEIQRCEKEHFTIP---CKSNNDCQVWAHEKIC 56
Query: 94 NKTC 97
NK C
Sbjct: 57 NKGC 60
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A
Length = 163
Score = 29.2 bits (65), Expect = 5.4
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 627 DGTRKQTLIA--LHHLKVMTKVVGLTDIDIFHRRR 659
+ +R+Q L L + +G+T DI+ +
Sbjct: 47 NASRRQYNSTCILRMLPPIKVTLGVTGKDIYAKGM 81
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 30.2 bits (67), Expect = 6.0
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 395 HCAPKVCSH--ICLPNKHRFTCQCPL----GLTLSPDNKSCSESPE--ELLIYARQKDLR 446
VC + +C + C C G S + + + E Y ++
Sbjct: 192 EGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPI 251
Query: 447 ISQLTEPSPTFETVLP 462
S E + +F+T+
Sbjct: 252 QSSSDEITLSFKTLQR 267
Score = 30.2 bits (67), Expect = 6.6
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 390 PNYQSHCAPKVCSH--ICLPNKHRFTCQCPLG 419
+ C CS+ +CL F+C C +
Sbjct: 1014 EGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMT 1045
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 29.2 bits (65), Expect = 6.5
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 22 CNRTGACIPAQWQCDNEFDCEMGEDEMKCPQASPPKKCSPDEHRCTTGHCILKTWLCDGI 81
C++ G C C ++KC + K C + G C L + C
Sbjct: 61 CSQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCG-- 118
Query: 82 PDCSLGEDERNCNKTCDA 99
C G + DA
Sbjct: 119 GGCQSGACSTDKPCGKDA 136
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 28.5 bits (64), Expect = 6.6
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 898 EYKTLATGRAKRAYAV---QSHP--YTLTVLDYYVYWTDVQHSKIYRA--NKYDVKDIVE 950
E + LA ++ + +S+ ++L+V D V+H KI Y + +
Sbjct: 25 ERQLLAPMNKAGSFLIRESESNKGAFSLSVKDITTQGEVVKHYKIRSLDNGGYYISPRIT 84
Query: 951 F 951
F
Sbjct: 85 F 85
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.8 bits (62), Expect = 6.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 970 NACGSN---NGG-CSHLCLRNPTNFTCACPTG 997
+C NGG C + +F C CP G
Sbjct: 49 KSCSEPRCFNGGTCQQALYFS--DFVCQCPEG 78
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural
genomics, midwest center for structu genomics,
TOLB-like, Ca binding; 2.55A {Escherichia coli}
Length = 255
Score = 29.2 bits (65), Expect = 7.3
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 417 PLGLTLSPDNK--SCSESPEELLIYARQKDLRISQLTEPSPTFETVLPVMNVKSVVAIAW 474
+ DN+ E + + + + + L + + +A+
Sbjct: 72 LETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ---ESPTNCGFEGLAY 128
Query: 475 ESANDSLYWADVENGEINRAHINGTFQYNVIRHNTKK----------PAGVAIDWRTNKL 524
+ + ++ E I +NG N + + K +G + + N L
Sbjct: 129 SRQDHTFWFFK-EKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL 187
Query: 525 YWTESEYNWIEVSNLDG 541
E ++ L G
Sbjct: 188 LVLSHESRALQEVTLVG 204
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets,
parallel beta- sandwich; NMR {Streptomyces tendae} SCOP:
b.11.1.6 PDB: 1gh5_A
Length = 87
Score = 27.8 bits (61), Expect = 7.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 532 NWIEVSNLDGTYPTLLFWQNLSEPRDIAVNPIGGIMYWCSW--GDLHKI 578
NW+E N TL F +NLS+PR + + W SW G +H+I
Sbjct: 40 NWVESGN---NVVTLQFQRNLSDPRLETIT----LQKWGSWNPGHIHEI 81
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 26.8 bits (59), Expect = 7.9
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 975 NNGGCSHLCLRNPTNFTCACPTG 997
N+ C + + + ++C C G
Sbjct: 18 NDAHCFAVKIADLPVYSCECAIG 40
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold,
structural genomics, joint center for structural
genomics, JCSG; 1.70A {Thermotoga maritima} SCOP:
c.23.16.1
Length = 239
Score = 29.0 bits (65), Expect = 8.6
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 906 RAKRAYAVQSHP-YTLTVLDYYVYWTDVQHSKIYRANKYDVKDIVEFAQVDRPWLVRAAQ 964
+A +Q H + W + ++ K D + ++E A+ + L +
Sbjct: 175 VYGKAVGLQFHIEVGARTMK---RWIEAYKDEL-EKKKIDPRLLLETAEREEKVLKGLLR 230
Query: 965 NI 966
++
Sbjct: 231 SL 232
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 29.1 bits (64), Expect = 9.4
Identities = 5/32 (15%), Positives = 6/32 (18%)
Query: 25 TGACIPAQWQCDNEFDCEMGEDEMKCPQASPP 56
T C + G D P
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.442
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,265,395
Number of extensions: 1309127
Number of successful extensions: 4197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3028
Number of HSP's successfully gapped: 513
Length of query: 1332
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1227
Effective length of database: 3,770,088
Effective search space: 4625897976
Effective search space used: 4625897976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.5 bits)