BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5809
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C G+F C G CIPQ W+CDG +DC G DE C P+ C Q + C
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPK---------TCSQDEF--RC 113
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
G KC+ + ++CD + DC D SDE +C
Sbjct: 114 HDG------KCISRQFVCDSDRDCLDGSDEASC 140
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C F C S CIPQ W CD D DC G DE P++ R + Q DS
Sbjct: 145 CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEW---PQR----CRGLYVFQGDSSPCSA 196
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143
F +C+ SW CDG DC D SDE NC +A
Sbjct: 197 FEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 231
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C EF C+ S CI W+CDG DC DE C RP SD
Sbjct: 194 CSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCA----VATCRPDEFQCSDG----- 243
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ S CD E DC D SDEV CV
Sbjct: 244 --------NCIHGSRQCDREYDCKDMSDEVGCV 268
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDE 137
KC+ W+CDG +C D SDE
Sbjct: 35 KCISYKWVCDGSAECQDGSDE 55
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 46 IGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPK 105
+ C EF C CI +CD + DC DEV CV C C +
Sbjct: 230 VATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE--- 285
Query: 106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
C+ +C+ DC D+SDE
Sbjct: 286 ------------CITLDKVCNMARDCRDWSDE 305
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C G+F C G CIPQ W+CDG +DC G DE C P+ C Q + C
Sbjct: 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPK---------TCSQDEF--RC 95
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
G KC+ + ++CD + DC D SDE +C
Sbjct: 96 HDG------KCISRQFVCDSDRDCLDGSDEASC 122
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C F C S CIPQ W CD D DC G DE P++ R + Q DS
Sbjct: 127 CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEW---PQR----CRGLYVFQGDSSPCSA 178
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143
F +C+ SW CDG DC D SDE NC +A
Sbjct: 179 FEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 213
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C EF C+ S CI W+CDG DC DE C RP SD
Sbjct: 176 CSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCA----VATCRPDEFQCSDG----- 225
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ S CD E DC D SDEV CV
Sbjct: 226 --------NCIHGSRQCDREYDCKDMSDEVGCV 250
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDE 137
KC+ W+CDG +C D SDE
Sbjct: 17 KCISYKWVCDGSAECQDGSDE 37
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 16/92 (17%)
Query: 46 IGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPK 105
+ C EF C CI +CD + DC DEV CV C C +
Sbjct: 212 VATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGE--- 267
Query: 106 MCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
C+ +C+ DC D+SDE
Sbjct: 268 ------------CITLDKVCNMARDCRDWSDE 287
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C F C S CIPQ W CD D DC G DE P++ R + Q DS
Sbjct: 6 TCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEW---PQR----CRGLYVFQGDSSPCS 57
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143
F +C+ SW CDG DC D SDE NC +A
Sbjct: 58 AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVA 93
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
CP +F C S CIP W CD D DC DE C + C
Sbjct: 4 TCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG------ 56
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ +W CD ++DCGD SDE C
Sbjct: 57 ---------RCININWRCDNDNDCGDNSDEAGC 80
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81
C F C G+ VC+P+ W CDGD DC G DE
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDE 137
CP C+ + WLCDG+ DC D +DE
Sbjct: 16 CPGTHVCVPERWLCDGDKDCADGADE 41
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
G C EF C +CIP W+CDGD DC DE C
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 110 GFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
G C PL W CDG+ DC D SDE +C
Sbjct: 15 GLCIPL------RWRCDGDTDCMDSSDEKSC 39
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 59 SCVCIPQEWKCDGDLDCYAGEDEVKCV 85
S VCIP +++C+G++DC GEDEV C
Sbjct: 250 SGVCIPSQYQCNGEVDCITGEDEVGCA 276
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 115 LFKCLKKSWL-----CDGEDDCGDFSDEVNC 140
F+C+ ++ CDG +DCGD SDE+ C
Sbjct: 208 FFQCVNGKYISQMKACDGINDCGDQSDELCC 238
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81
C F C G+ VC+P+ W CDGD DC G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 32.7 bits (73), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDE 137
CP C+ + WLCDG+ DC D +DE
Sbjct: 14 CPGTHVCVPERWLCDGDKDCADGADE 39
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 103 SPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
S C+ C +C+ + LC+G++DCGD SDE NC
Sbjct: 64 SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKC 84
C G+F C G CIPQ W+CDG +DC G DE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ + W CDG+ DC + SDE C
Sbjct: 20 RCIPQFWRCDGQVDCDNGSDEQGC 43
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCIGSC-VCIPQEWKCDGDLDCYAGEDEVKC 84
C G+F C G CIPQ W+CDG +DC G DE C
Sbjct: 49 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
+C EF C CI +W CDG +C G DE + V C D
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQ-------ETCLSVTCKSGDFSCGG 58
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C P F W CDG+ DC + SDE C
Sbjct: 59 RVNRCIPQF------WRCDGQVDCDNGSDEQGC 85
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 103 SPKMC-DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+P C D + +C+ K+W+CD ++DCGD SDE NC
Sbjct: 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 43 SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
+H C ++ C CI + W CD D DC G DE C
Sbjct: 1 THAPASCLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNC 41
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3
From The Low Density Lipoprotein Receptor-Related
Protein (Lrp) . Evidence For Specific Binding To The
Receptor Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEV 82
+C GEF C S CI + WKCDGD DC DE
Sbjct: 5 QCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEA 38
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 103 SPKMCDKG-FCPPLFKCLKKSWLCDGEDDCGDFSDEV 138
SP C G F +C+++ W CDG++DC D SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C + E C S CIP W+CDG+ DC +GEDE C
Sbjct: 3 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDGE+DC DE NC
Sbjct: 16 QCIPVSWRCDGENDCDSGEDEENC 39
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVN 139
+C+ + W CDG++DCGD+SDE +
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETH 38
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDC--YAGEDEVKCVPE 87
C +F C S CIP+ W CDGD DC Y+ E C +
Sbjct: 5 CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C + E C S CIP W+CDG+ DC +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDGE+DC DE NC
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding
Domain Of Tva
Length = 47
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 46 IGKCPVGEFLCI----GSCVCIPQEWKCDGDLDCYAGEDEVKC 84
G CP G+F C C PQ+W CDG DC G DE C
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C + WLCDG DC D DE C
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDEWGC 46
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of
Tva
Length = 47
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 48 KCPVGEFLCI----GSCVCIPQEWKCDGDLDCYAGEDEVKC 84
+CP G+F C C PQ+W CDG DC G DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVLA 143
+C + WLCDG DC D DE C +
Sbjct: 21 ECYPQDWLCDGHPDCDDGRDEWGCGTS 47
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 11/46 (23%)
Query: 107 CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC-----VLARKFN 147
CD G +C+ + C+GE+DCGD SDE +C V RK+N
Sbjct: 125 CDSG------RCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYN 164
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C EF C CI +++ CD D DC G DE C PA C+
Sbjct: 3 CSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPAS-----------FQCN 50
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
C P W CD + DC D SDE
Sbjct: 51 SSTCIPQL------WACDNDPDCEDGSDE 73
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 46 IGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81
+ C F C S CIPQ W CD D DC G DE
Sbjct: 39 VLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDE 73
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
KC+ + ++CD + DC D SDE +C
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEASC 37
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 69 CDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE 128
C GD+ D+ C C VR C Q C +CLK+ +C+G+
Sbjct: 44 CSGDI-----WDQASCSSSTTC--VRQAQCGQDFQ--------CKETGRCLKRHLVCNGD 88
Query: 129 DDCGDFSDEVNCVLARKFND 148
DC D SDE +C R ++
Sbjct: 89 QDCLDGSDEDDCEDVRAIDE 108
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 42 ASHCIGKCPVGE-FLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC----VPEKECPAVRPV 96
++ C+ + G+ F C + C+ + C+GD DC G DE C +++C P+
Sbjct: 57 STTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPI 116
Query: 97 ACPQ 100
Q
Sbjct: 117 PGSQ 120
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+ SW CDG DC D SDE NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C EF C+ S CI W+CDG DC DE C
Sbjct: 2 CSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDEENCA 37
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module
From Ldlr Determined With Haddock
Length = 40
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81
C F C S CIPQ W CD D DC G DE
Sbjct: 2 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDE 33
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVLARKFND 148
+C+ K ++CDG +DC + DE +C L K D
Sbjct: 68 QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGD 99
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 62 CIPQEWKCDGDLDCYAGEDEVKCV 85
CI + + CDG DC GEDE C
Sbjct: 69 CISKLFVCDGHNDCRNGEDEKDCT 92
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C + KCL + C+G DDCG+ +DE NC
Sbjct: 14 CGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
KC +G F C C+PQ C+G DC DE C
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 29.6 bits (65), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C +F C CI ++CDG DC DE C
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ S CD E DC D SDEV CV
Sbjct: 15 NCIHGSRQCDREYDCKDLSDEVGCV 39
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ S CD E DC D SDEV CV
Sbjct: 14 NCIHGSRQCDREYDCKDMSDEVGCV 38
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ W CD +DDC D SDE +C
Sbjct: 19 RCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
+C +F C CIP W+CD D DC DE C
Sbjct: 7 ECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC 42
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 40 YHASHCIG--KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA-VRPV 96
Y + H +G + +GE + S + Q +G L Y D + + +EC A V+P
Sbjct: 354 YFSGHILGFGEDELGEVYILSSSKSMTQTH--NGKL--YKIVDPKRPLMPEECRATVQPA 409
Query: 97 ACPQSDSPKMCDKGFCPPLFKC 118
S+ ++C G+C P KC
Sbjct: 410 QTLTSECSRLCRNGYCTPTGKC 431
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat
From The Low-Density Lipoprotein Receptor
Length = 48
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK 83
+C EF C CI +W CDG +C G DE +
Sbjct: 7 RCERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQ 41
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDE 137
KC+ W+CDG +C D SDE
Sbjct: 19 KCISYKWVCDGSAECQDGSDE 39
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 40 YHASHCIG--KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA-VRPV 96
Y + H +G + +GE + S + Q +G L Y D + + +EC A V+P
Sbjct: 333 YFSGHILGFGEDELGEVYILSSSKSMTQTH--NGKL--YKIVDPKRPLMPEECRATVQPA 388
Query: 97 ACPQSDSPKMCDKGFCPPLFKC 118
S+ ++C G+C P KC
Sbjct: 389 QTLTSECSRLCRNGYCTPTGKC 410
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 40 YHASHCIG--KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA-VRPV 96
Y + H +G + +GE + S + Q +G L Y D + + +EC A V+P
Sbjct: 333 YFSGHILGFGEDELGEVYILSSSKSMTQTH--NGKL--YKIVDPKRPLMPEECRATVQPA 388
Query: 97 ACPQSDSPKMCDKGFCPPLFKC 118
S+ ++C G+C P KC
Sbjct: 389 QTLTSECSRLCRNGYCTPTGKC 410
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 40 YHASHCIG--KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA-VRPV 96
Y + H +G + +GE + S + Q +G L Y D + + +EC A V+P
Sbjct: 333 YFSGHILGFGEDELGEVYILSSSKSMTQTH--NGKL--YKIVDPKRPLMPEECRATVQPA 388
Query: 97 ACPQSDSPKMCDKGFCPPLFKC 118
S+ ++C G+C P KC
Sbjct: 389 QTLTSECSRLCRNGYCTPTGKC 410
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 40 YHASHCIG--KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPA-VRPV 96
Y + H +G + +GE + S Q +G L Y D + + +EC A V+P
Sbjct: 354 YFSGHILGFGEDELGEVYILSSSKSXTQTH--NGKL--YKIVDPKRPLXPEECRATVQPA 409
Query: 97 ACPQSDSPKMCDKGFCPPLFKC 118
S+ ++C G+C P KC
Sbjct: 410 QTLTSECSRLCRNGYCTPTGKC 431
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,605
Number of Sequences: 62578
Number of extensions: 252099
Number of successful extensions: 478
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 93
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)