Query psy5809
Match_columns 160
No_of_seqs 188 out of 1257
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:33:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00057 Ldl_recept_a: Low-den 99.3 2.5E-12 5.5E-17 75.9 3.2 36 48-84 2-37 (37)
2 cd00112 LDLa Low Density Lipop 99.2 3.8E-12 8.2E-17 74.2 2.5 35 49-84 1-35 (35)
3 PF00057 Ldl_recept_a: Low-den 99.2 7.8E-12 1.7E-16 73.8 2.6 36 97-140 2-37 (37)
4 cd00112 LDLa Low Density Lipop 99.2 1.5E-11 3.2E-16 71.7 2.2 32 103-140 4-35 (35)
5 smart00192 LDLa Low-density li 99.0 4.6E-10 1E-14 64.5 2.6 32 49-81 2-33 (33)
6 PF12999 PRKCSH-like: Glucosid 98.9 2E-09 4.3E-14 83.7 4.7 69 51-137 35-110 (176)
7 smart00192 LDLa Low-density li 98.9 1.3E-09 2.8E-14 62.6 2.5 32 98-137 2-33 (33)
8 KOG1215|consensus 98.0 4.1E-06 8.9E-11 78.8 3.8 82 49-138 138-251 (877)
9 KOG1215|consensus 98.0 8.7E-06 1.9E-10 76.6 5.0 78 51-145 220-299 (877)
10 KOG2397|consensus 97.4 0.00021 4.6E-09 63.0 4.4 75 51-140 42-116 (480)
11 PF12999 PRKCSH-like: Glucosid 96.4 0.0036 7.9E-08 48.9 3.4 43 38-81 62-110 (176)
12 KOG3509|consensus 94.1 0.073 1.6E-06 51.1 4.8 80 49-141 32-111 (964)
13 KOG2397|consensus 87.4 0.65 1.4E-05 41.5 3.5 46 37-83 67-115 (480)
14 KOG3509|consensus 69.6 3 6.6E-05 40.4 2.0 66 61-141 2-67 (964)
15 PF04885 Stig1: Stigma-specifi 32.5 73 0.0016 23.8 3.7 56 49-122 53-109 (136)
16 smart00042 CUB Domain first fo 30.0 57 0.0012 21.4 2.6 23 12-34 80-102 (102)
No 1
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.28 E-value=2.5e-12 Score=75.88 Aligned_cols=36 Identities=53% Similarity=1.215 Sum_probs=33.7
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C 84 (160)
.|.+.+|+|.++ .||+..|+|||+.||.||+||.+|
T Consensus 2 ~C~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTS-SEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCC-CEEChHHcCCCCCCCCCCcccccC
Confidence 488999999999 799999999999999999999876
No 2
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.25 E-value=3.8e-12 Score=74.21 Aligned_cols=35 Identities=51% Similarity=1.241 Sum_probs=32.5
Q ss_pred CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84 (160)
Q Consensus 49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C 84 (160)
|++.+|+|.++ +||+..|+|||+.||+|||||.+|
T Consensus 1 C~~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCC-CeeCHHHcCCCccCCCCCcccccC
Confidence 56789999997 999999999999999999999876
No 3
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.21 E-value=7.8e-12 Score=73.79 Aligned_cols=36 Identities=50% Similarity=1.022 Sum_probs=33.0
Q ss_pred CCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809 97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140 (160)
Q Consensus 97 ~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C 140 (160)
.|.. ++|+| .++.||+..|+|||+.||.|||||.+|
T Consensus 2 ~C~~--~~f~C------~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPP--GEFRC------GNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSST--TEEEE------TTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcC--CeeEc------CCCCEEChHHcCCCCCCCCCCcccccC
Confidence 4777 99999 788899999999999999999999876
No 4
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.16 E-value=1.5e-11 Score=71.70 Aligned_cols=32 Identities=56% Similarity=1.155 Sum_probs=30.4
Q ss_pred CCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809 103 SPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140 (160)
Q Consensus 103 ~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C 140 (160)
++|+| .+++||+..++|||+.||+|||||.+|
T Consensus 4 ~~f~C------~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 4 NEFRC------ANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CeEEc------CCCCeeCHHHcCCCccCCCCCcccccC
Confidence 89999 779999999999999999999999976
No 5
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.96 E-value=4.6e-10 Score=64.46 Aligned_cols=32 Identities=56% Similarity=1.234 Sum_probs=29.7
Q ss_pred CCCCcEEeCCCCeEeeCccccCCcccCCCCCCC
Q psy5809 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE 81 (160)
Q Consensus 49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE 81 (160)
|+..+|+|.++ .||+..++|||+.||.||+||
T Consensus 2 C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence 56679999988 899999999999999999998
No 6
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.89 E-value=2e-09 Score=83.68 Aligned_cols=69 Identities=33% Similarity=0.478 Sum_probs=58.7
Q ss_pred CCcEEeCCCCeE-eeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC---eEEeCccccC
Q psy5809 51 VGEFLCIGSCVC-IPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLF---KCLKKSWLCD 126 (160)
Q Consensus 51 ~~~f~C~~g~~C-I~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g---~CI~~~~~CD 126 (160)
.+.|.|.++..= |+..++.|++-||+|||||.+= ..|+. +.|+| .+.| .-|+.++|=|
T Consensus 35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGT-----------sAC~~--~~FyC-----~N~g~~p~~i~~s~VnD 96 (176)
T PF12999_consen 35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGT-----------SACSN--GKFYC-----ENKGHIPRYIPSSRVND 96 (176)
T ss_pred CCceEecCCCCceecHHHccCcceeCCCCCCcccc-----------ccCcC--ceEee-----ccCCCCCceeehhhhcC
Confidence 467999998666 9999999999999999999642 34766 89999 2333 5799999999
Q ss_pred CCCC---CCCCCCC
Q psy5809 127 GEDD---CGDFSDE 137 (160)
Q Consensus 127 G~~D---C~DgsDE 137 (160)
|+-| |-|||||
T Consensus 97 GICDy~~CCDGSDE 110 (176)
T PF12999_consen 97 GICDYDICCDGSDE 110 (176)
T ss_pred CcCcccccCCCCCC
Confidence 9999 9999999
No 7
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.87 E-value=1.3e-09 Score=62.56 Aligned_cols=32 Identities=50% Similarity=1.059 Sum_probs=29.2
Q ss_pred CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCC
Q psy5809 98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137 (160)
Q Consensus 98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE 137 (160)
|.. .+|+| .++.||+..++|||+.||.|+|||
T Consensus 2 C~~--~~f~C------~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPP--GEFQC------DNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCC--CeEEC------CCCCEECchhhCCCcCcCcCCCCC
Confidence 555 68999 788999999999999999999998
No 8
>KOG1215|consensus
Probab=98.02 E-value=4.1e-06 Score=78.82 Aligned_cols=82 Identities=34% Similarity=0.703 Sum_probs=60.3
Q ss_pred CCCCcEEeC--CCCeEeeCccccCCcccCCCCCCCCCCCCCC-CCCC---------------------CCCC-----CCC
Q psy5809 49 CPVGEFLCI--GSCVCIPQEWKCDGDLDCYAGEDEVKCVPEK-ECPA---------------------VRPV-----ACP 99 (160)
Q Consensus 49 C~~~~f~C~--~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~-~c~~---------------------~~~~-----~C~ 99 (160)
|...+|+|. +. +||+..|+||+..+|.+|+||.+|.... .+.. ..+. .+.
T Consensus 138 ~~~~~~~c~~~~~-~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~ 216 (877)
T KOG1215|consen 138 CCLDKFSCRTGSC-KCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTD 216 (877)
T ss_pred ccCCCCCCcCccc-cCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccC
Confidence 667899999 55 9999999999999999999999986221 0000 0000 011
Q ss_pred ---CCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCC
Q psy5809 100 ---QSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEV 138 (160)
Q Consensus 100 ---~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~ 138 (160)
. ..++| ....+||...++|||..||.+++||.
T Consensus 217 ~~~~--~~~~c-----~g~~~~i~~~~~~Dg~~dc~~~~de~ 251 (877)
T KOG1215|consen 217 DSRI--EVTRC-----DGSSRCILISEVCDGPRDCVDGPDEG 251 (877)
T ss_pred Ccce--eEEEe-----cCCCcEEeehhccCCCcccccCCcCc
Confidence 2 45666 23358999999999999999999984
No 9
>KOG1215|consensus
Probab=97.97 E-value=8.7e-06 Score=76.65 Aligned_cols=78 Identities=35% Similarity=0.585 Sum_probs=67.2
Q ss_pred CCcEEeCCCCeEeeCccccCCcccCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCC
Q psy5809 51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEV--KCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE 128 (160)
Q Consensus 51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~--~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~ 128 (160)
...++|..++.||...+.|||..||.+++||. +|.. ..|.. .++.| ..+.|++..++|||.
T Consensus 220 ~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~---------~~~~~--~e~~~------~~~~~~~~~~~~~g~ 282 (877)
T KOG1215|consen 220 IEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSD---------ATCEA--PEIEC------ADGDCSDRQKLCDGD 282 (877)
T ss_pred eeEEEecCCCcEEeehhccCCCcccccCCcCceeEeec---------cccCC--cceee------cCCCCccceEEecCc
Confidence 46789988679999999999999999999994 5654 45666 78999 889999999999999
Q ss_pred CCCCCCCCCCCCCCCCc
Q psy5809 129 DDCGDFSDEVNCVLARK 145 (160)
Q Consensus 129 ~DC~DgsDE~~C~~~~~ 145 (160)
.||+||+||.+|.....
T Consensus 283 ~d~pdg~de~~~~~~~~ 299 (877)
T KOG1215|consen 283 LDCPDGLDEDYCKKKLY 299 (877)
T ss_pred cCCCCccccccccccee
Confidence 99999999998875443
No 10
>KOG2397|consensus
Probab=97.36 E-value=0.00021 Score=62.97 Aligned_cols=75 Identities=31% Similarity=0.405 Sum_probs=61.4
Q ss_pred CCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCC
Q psy5809 51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDD 130 (160)
Q Consensus 51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~D 130 (160)
...|.|.++.+=|+..++-|..-||.||+||..= ..|+. +.|+|.++ +-...-|+.+.|=||+-|
T Consensus 42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt-----------sACpn--gkF~C~N~--G~~p~~i~ssrV~DGICD 106 (480)
T KOG2397|consen 42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT-----------SACPN--GKFYCVNQ--GHQPKYIPSSRVNDGICD 106 (480)
T ss_pred ccceeeccCCcccCHHHhccccccCCCCCCCCcc-----------ccCCC--Cceeeeec--CCCceeeechhccCcccc
Confidence 3589999999999999999999999999999431 45777 89999321 122357999999999999
Q ss_pred CCCCCCCCCC
Q psy5809 131 CGDFSDEVNC 140 (160)
Q Consensus 131 C~DgsDE~~C 140 (160)
|-|||||..=
T Consensus 107 CCDgSDE~~S 116 (480)
T KOG2397|consen 107 CCDGSDEYLS 116 (480)
T ss_pred cccCCCCccC
Confidence 9999999754
No 11
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=96.37 E-value=0.0036 Score=48.86 Aligned_cols=43 Identities=33% Similarity=0.565 Sum_probs=37.1
Q ss_pred CCCCCCcCCCCCCCCcEEeCCCC---eEeeCccccCCccc---CCCCCCC
Q psy5809 38 DPYHASHCIGKCPVGEFLCIGSC---VCIPQEWKCDGDLD---CYAGEDE 81 (160)
Q Consensus 38 d~~de~~C~~~C~~~~f~C~~g~---~CI~~~~~CDg~~D---C~dgsDE 81 (160)
||+||..= ..|+.+.|.|.|.+ .-||..+|=||+-| |=|||||
T Consensus 62 DGSDEPGT-sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 62 DGSDEPGT-SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CCCCcccc-ccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 88888542 23878899999875 78999999999999 9999999
No 12
>KOG3509|consensus
Probab=94.15 E-value=0.073 Score=51.08 Aligned_cols=80 Identities=31% Similarity=0.662 Sum_probs=65.6
Q ss_pred CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCC
Q psy5809 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE 128 (160)
Q Consensus 49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~ 128 (160)
+.+.++.|.++ ++....|.||....+..++++.+|... .....|.+ ..+.| ...-++.+++..|||.
T Consensus 32 ~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~~~--~~~~c-----~~~~~~~~~~~~~~g~ 98 (964)
T KOG3509|consen 32 CSPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAK-----PSASDCKP--TETQC-----RDRLRCNPQSFQCDGT 98 (964)
T ss_pred CCcchhccCCc-cccCchhhhccccccCCCCCcCCcccc-----ccccccCC--ccccc-----ccchhcCCccccccCC
Confidence 77899999999 999999999999999999988777642 22345666 77888 3445788899999999
Q ss_pred CCCCCCCCCCCCC
Q psy5809 129 DDCGDFSDEVNCV 141 (160)
Q Consensus 129 ~DC~DgsDE~~C~ 141 (160)
+||.++++|..+-
T Consensus 99 ~~~~~~~~~~~~~ 111 (964)
T KOG3509|consen 99 NDCKDGSDEVGCK 111 (964)
T ss_pred CCCCccchhcccc
Confidence 9999999998653
No 13
>KOG2397|consensus
Probab=87.44 E-value=0.65 Score=41.45 Aligned_cols=46 Identities=35% Similarity=0.631 Sum_probs=37.7
Q ss_pred cCCCCCCcCCCCCCCCcEEeCCCC---eEeeCccccCCcccCCCCCCCCC
Q psy5809 37 LDPYHASHCIGKCPVGEFLCIGSC---VCIPQEWKCDGDLDCYAGEDEVK 83 (160)
Q Consensus 37 ~d~~de~~C~~~C~~~~f~C~~g~---~CI~~~~~CDg~~DC~dgsDE~~ 83 (160)
.||+||..= ..|+.+.|.|.|.+ .-|+.+.+=||+-||-|||||..
T Consensus 67 ~DGsDEPGt-sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 67 LDGSDEPGT-SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred CCCCCCCcc-ccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 378777321 23999999999754 79999999999999999999974
No 14
>KOG3509|consensus
Probab=69.64 E-value=3 Score=40.41 Aligned_cols=66 Identities=24% Similarity=0.509 Sum_probs=56.3
Q ss_pred eEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809 61 VCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140 (160)
Q Consensus 61 ~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C 140 (160)
.|....+.|++..|+.+.+|+.++.. ....+.+ ++++| .++++....+.||...++..++++.+|
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~p--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPA-------IGSACSP--NEFKC------NNPRCVQPEALLDADSTCGPNSTPSGC 66 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCcc-------ccccCCc--chhcc------CCccccCchhhhccccccCCCCCcCCc
Confidence 56778889999999999999988753 2355777 89999 889999999999999999999988877
Q ss_pred C
Q psy5809 141 V 141 (160)
Q Consensus 141 ~ 141 (160)
.
T Consensus 67 ~ 67 (964)
T KOG3509|consen 67 N 67 (964)
T ss_pred c
Confidence 4
No 15
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=32.50 E-value=73 Score=23.85 Aligned_cols=56 Identities=21% Similarity=0.561 Sum_probs=29.9
Q ss_pred CCCCcEEeCCCCeEeeCccccCCcccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCc
Q psy5809 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYA-GEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKS 122 (160)
Q Consensus 49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~d-gsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~ 122 (160)
|......|...+..-+...-|.+ .|-| ++|..+|..- ...|+. ++.-| .|.|+...
T Consensus 53 C~~~~~iC~~~~~~~~~~~CC~~--~Cvdv~~d~~nCG~C-------g~~C~~--g~~cC-------~G~Cvd~~ 109 (136)
T PF04885_consen 53 CNKDPWICSAKGKCSPGPTCCNN--KCVDVSSDRNNCGAC-------GNKCPY--GQTCC-------GGQCVDLN 109 (136)
T ss_pred cCCCchhhcCCCCCCCCCcccCC--cCCccCCCccccHhh-------cCCCCC--Cceec-------CCEeECCC
Confidence 44455555554322233233433 5665 5688887641 245776 55444 67787765
No 16
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=30.02 E-value=57 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=17.1
Q ss_pred eCCeEEEEecCCCCCCCceEEEE
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIF 34 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~ 34 (160)
.+.++++|+++......||.+.|
T Consensus 80 ~n~~~i~f~s~~~~~~~GF~~~y 102 (102)
T smart00042 80 SNSLTVTFVSDSSVQKRGFSARY 102 (102)
T ss_pred CCEEEEEEEeCCCCCCCCeEEEC
Confidence 36778888888766678887754
Done!