Query psy5809
Match_columns 160
No_of_seqs 188 out of 1257
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fyj_A Low-density lipoprotein 99.9 3.1E-24 1.1E-28 146.9 8.2 76 48-141 4-81 (82)
2 2fcw_B LDL receptor, low-densi 99.9 2.2E-24 7.7E-29 147.0 3.6 76 48-141 2-79 (80)
3 1n7d_A LDL receptor, low-densi 99.8 1.9E-19 6.7E-24 162.7 9.1 87 38-142 76-165 (699)
4 1n7d_A LDL receptor, low-densi 99.8 1.8E-18 6E-23 156.5 9.4 89 38-144 154-253 (699)
5 3m0c_C LDL receptor, low-densi 99.7 1.4E-19 4.9E-24 166.1 0.0 101 26-143 31-143 (791)
6 3m0c_C LDL receptor, low-densi 99.7 5.8E-19 2E-23 162.1 0.0 87 37-141 93-182 (791)
7 2xrc_A Human complement factor 99.5 3.6E-15 1.2E-19 132.3 5.4 73 51-143 206-278 (565)
8 2gtl_O Extracellular hemoglobi 99.4 8.1E-15 2.8E-19 116.1 -3.0 92 38-144 45-175 (215)
9 1ajj_A LR5, low-density lipopr 99.3 5.8E-13 2E-17 77.7 3.6 36 49-85 2-37 (37)
10 1cr8_A Protein (LOW density li 99.3 1.1E-12 3.8E-17 78.6 4.6 39 48-86 3-41 (42)
11 2jm4_A Relaxin receptor 1; LDL 99.3 2E-12 6.7E-17 77.8 4.3 39 47-85 5-43 (43)
12 2kny_A LRP-1, linker, APO-E; l 99.3 5E-13 1.7E-17 90.7 1.8 63 48-126 8-75 (80)
13 1cr8_A Protein (LOW density li 99.3 2.5E-12 8.5E-17 77.0 4.3 40 96-142 2-41 (42)
14 2i1p_A Low-density lipoprotein 99.3 9.6E-13 3.3E-17 81.0 2.5 43 44-86 2-44 (48)
15 3a7q_B Low-density lipoprotein 99.3 2.3E-12 8E-17 77.9 3.7 37 48-85 7-43 (44)
16 1ajj_A LR5, low-density lipopr 99.3 2.1E-12 7E-17 75.3 3.1 36 98-141 2-37 (37)
17 1d2l_A Lipoprotein receptor re 99.3 3.2E-12 1.1E-16 77.7 4.1 37 48-85 5-41 (45)
18 3dpr_E LDL-receptor class A 3; 99.3 1.7E-12 5.9E-17 76.5 2.8 37 49-85 1-38 (39)
19 2jm4_A Relaxin receptor 1; LDL 99.3 4E-12 1.4E-16 76.5 4.2 38 96-141 5-43 (43)
20 2m0p_A Low-density lipoprotein 99.2 1.7E-12 5.8E-17 81.2 2.0 39 47-86 5-43 (52)
21 1k7b_A Subgroup A ROUS sarcoma 99.2 2.6E-12 8.7E-17 78.7 2.6 37 48-85 6-47 (47)
22 3a7q_B Low-density lipoprotein 99.2 4E-12 1.4E-16 76.8 3.4 38 96-141 6-43 (44)
23 3dpr_E LDL-receptor class A 3; 99.2 5E-12 1.7E-16 74.5 3.3 33 103-141 4-38 (39)
24 1d2l_A Lipoprotein receptor re 99.2 7.5E-12 2.6E-16 76.0 4.1 38 96-141 4-41 (45)
25 1k7b_A Subgroup A ROUS sarcoma 99.2 3.5E-12 1.2E-16 78.1 2.4 43 96-141 5-47 (47)
26 2fcw_B LDL receptor, low-densi 99.2 2.8E-12 9.5E-17 86.9 1.5 57 28-85 12-79 (80)
27 2m0p_A Low-density lipoprotein 99.2 3.4E-12 1.2E-16 79.8 1.4 40 95-142 4-43 (52)
28 2knx_A Prolow-density lipoprot 99.2 1.2E-11 4.1E-16 76.7 3.7 37 48-85 6-43 (50)
29 2fyj_A Low-density lipoprotein 99.2 3E-11 1E-15 82.1 4.6 39 96-142 3-42 (82)
30 1j8e_A Low-density lipoprotein 99.1 1.1E-11 3.9E-16 74.8 2.1 36 48-84 4-39 (44)
31 1jrf_A TVA LDL-A module, subgr 99.1 4.7E-12 1.6E-16 77.5 0.3 44 96-142 3-46 (47)
32 2knx_A Prolow-density lipoprot 99.1 1.8E-11 6.3E-16 75.9 2.8 39 96-141 5-43 (50)
33 2i1p_A Low-density lipoprotein 99.1 1.1E-11 3.9E-16 76.1 1.8 40 96-143 5-45 (48)
34 1jrf_A TVA LDL-A module, subgr 99.1 6.5E-12 2.2E-16 76.8 0.2 38 48-85 4-45 (47)
35 2gtl_O Extracellular hemoglobi 99.1 4E-12 1.4E-16 100.6 -2.1 58 68-143 36-94 (215)
36 1j8e_A Low-density lipoprotein 99.1 2.9E-11 1E-15 73.0 1.8 37 96-140 3-39 (44)
37 2kny_A LRP-1, linker, APO-E; l 99.0 2.8E-10 9.4E-15 77.1 3.9 49 96-151 7-58 (80)
38 2gtl_M Hemoglobin linker chain 98.8 3.6E-09 1.2E-13 83.8 4.3 39 48-86 53-94 (217)
39 3ojy_A Complement component C8 98.8 9.7E-09 3.3E-13 91.2 7.2 85 43-144 18-104 (554)
40 2gtl_N Extracellular hemoglobi 98.8 4.1E-09 1.4E-13 83.2 3.9 39 48-86 52-93 (220)
41 3ojy_B Complement component C8 98.7 1.4E-08 4.8E-13 89.8 6.9 83 43-143 20-104 (537)
42 2xrc_A Human complement factor 98.6 6.8E-09 2.3E-13 92.0 2.3 66 53-142 175-240 (565)
43 2gtl_M Hemoglobin linker chain 98.6 1.6E-08 5.4E-13 80.1 2.9 41 96-143 52-95 (217)
44 2gtl_N Extracellular hemoglobi 98.6 2.8E-08 9.4E-13 78.5 3.5 41 96-143 51-94 (220)
45 3ojy_B Complement component C8 98.4 1.3E-07 4.3E-12 83.7 4.7 34 52-86 69-103 (537)
46 3ojy_A Complement component C8 98.3 4.4E-07 1.5E-11 80.6 4.3 36 49-86 66-102 (554)
47 3t5o_A Complement component C6 97.9 2.1E-05 7.1E-10 73.3 6.7 61 73-143 94-155 (913)
48 3t5o_A Complement component C6 97.5 4E-05 1.4E-09 71.4 3.0 34 52-86 121-154 (913)
49 1spp_B Major seminal plasma gl 70.5 4.2 0.00014 27.6 3.6 28 12-39 85-112 (116)
50 1spp_A Major seminal plasma gl 69.7 5 0.00017 26.9 3.8 26 12-37 81-106 (109)
51 2wno_A Tumor necrosis factor-i 66.3 5.7 0.00019 28.3 3.7 29 12-40 94-122 (149)
52 1sfp_A ASFP; spermadhesin, bov 64.7 6 0.00021 26.6 3.4 26 12-37 86-111 (114)
53 1nzi_A Complement C1S componen 55.2 9.4 0.00032 26.9 3.1 29 11-39 87-117 (159)
54 4aqb_A Mannan-binding lectin s 41.6 21 0.00073 28.6 3.6 27 11-37 252-278 (361)
55 4gz9_A Neuropilin-1, A5 protei 41.2 22 0.00075 31.0 3.8 30 11-40 221-250 (577)
56 1szb_A Mannose binding lectin- 39.9 22 0.00076 25.4 3.1 28 11-38 94-123 (170)
57 2qqm_A Neuropilin-1; VEGF rece 29.5 46 0.0016 27.7 3.8 28 12-39 104-131 (450)
58 3dem_A Complement factor MAsp- 28.3 42 0.0014 25.8 3.1 29 11-39 91-121 (278)
59 2qqo_A Neuropilin-2; VEGF rece 27.9 48 0.0016 27.7 3.7 29 11-39 100-128 (460)
60 4aqb_A Mannan-binding lectin s 27.7 41 0.0014 26.9 3.1 28 12-39 92-121 (361)
61 1nt0_A MAsp2, mannose-binding 26.3 44 0.0015 26.0 2.9 28 12-39 91-120 (286)
62 4gz9_A Neuropilin-1, A5 protei 20.1 82 0.0028 27.3 3.7 27 12-38 98-124 (577)
No 1
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.90 E-value=3.1e-24 Score=146.88 Aligned_cols=76 Identities=39% Similarity=0.924 Sum_probs=69.6
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCC-CCCCCCCCCCCCCCCCCC-CCCCCccCCCCCCCCCCeEEeCcccc
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE-VKCVPEKECPAVRPVACP-QSDSPKMCDKGFCPPLFKCLKKSWLC 125 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE-~~C~~~~~c~~~~~~~C~-~~~~~f~C~~~~~~~~g~CI~~~~~C 125 (160)
.|.+.+|+|.+| +||+..|+|||+.||.||||| .+|.. ..|. . .+|+| .+|+||+..|+|
T Consensus 4 ~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~---------~~C~~~--~~f~C------~~g~CI~~~~~C 65 (82)
T 2fyj_A 4 TCPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAY---------PTCFPL--TQFTC------NNGRCININWRC 65 (82)
T ss_dssp SSCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCC---------SSSCSS--SEEEC------TTSCEEETTCBS
T ss_pred CCCCCceEeCCC-CEEeccccCCCcccCCCcccccccccc---------ccCCCC--CceEC------CCCCeEcHHHcc
Confidence 488999999998 999999999999999999999 88974 4574 4 79999 789999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q psy5809 126 DGEDDCGDFSDEVNCV 141 (160)
Q Consensus 126 DG~~DC~DgsDE~~C~ 141 (160)
||+.||.|||||.+|.
T Consensus 66 DG~~DC~DgSDE~~C~ 81 (82)
T 2fyj_A 66 DNDNDCGDNSDEAGCS 81 (82)
T ss_dssp SSSBCCSSSSSCSCCC
T ss_pred CCCCcCCCCccccCCC
Confidence 9999999999999995
No 2
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.89 E-value=2.2e-24 Score=147.04 Aligned_cols=76 Identities=37% Similarity=0.878 Sum_probs=69.1
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDG 127 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG 127 (160)
.|++.+|+|.+| +||+..|+|||+.||.|||||.+|.. ..|.. .+|+| .+++||+..|+|||
T Consensus 2 ~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~---------~~C~~--~~f~C------~~g~Ci~~~~~CDg 63 (80)
T 2fcw_B 2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NSSTCIPQLWACDN 63 (80)
T ss_dssp CCCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHH---------HHCCT--TEEEC------TTSCEEEGGGTTSS
T ss_pred CCCCCccCCCCC-CEEeeecccCCcccCCCccccccccc---------ccCCc--eeeEC------CCCCEEecccccCC
Confidence 378899999998 99999999999999999999999863 35887 89999 78999999999999
Q ss_pred CCCCCCCCCC--CCCC
Q psy5809 128 EDDCGDFSDE--VNCV 141 (160)
Q Consensus 128 ~~DC~DgsDE--~~C~ 141 (160)
+.||.||||| .+|.
T Consensus 64 ~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 64 DPDCEDGSDEWPQRCR 79 (80)
T ss_dssp SCCSTTCGGGCGGGC-
T ss_pred CcCCCCCCCcCcccCC
Confidence 9999999999 6774
No 3
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.79 E-value=1.9e-19 Score=162.73 Aligned_cols=87 Identities=33% Similarity=0.769 Sum_probs=76.8
Q ss_pred CCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCC
Q psy5809 38 DPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLF 116 (160)
Q Consensus 38 d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g 116 (160)
|++||.+|.. .|.+.+|+|.++ +||+..|+|||+.||.|||||.+|.. ..|.+ .+|+| .++
T Consensus 76 dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~---------~~C~~--~~f~C------~~~ 137 (699)
T 1n7d_A 76 NGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NSS 137 (699)
T ss_dssp CCCTTTSCSSCCCCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCC---------CCCCS--SCCCC------SSS
T ss_pred CCcccCcccccccccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCc---------cccCc--cccCC------CCC
Confidence 8899999974 599999999998 99999999999999999999999975 56988 99999 889
Q ss_pred eEEeCccccCCCCCCCCCCCC--CCCCC
Q psy5809 117 KCLKKSWLCDGEDDCGDFSDE--VNCVL 142 (160)
Q Consensus 117 ~CI~~~~~CDG~~DC~DgsDE--~~C~~ 142 (160)
+||+..|+|||+.||.||||| .+|..
T Consensus 138 ~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~ 165 (699)
T 1n7d_A 138 TCIPQLWACDNDPDCEDGSDEWPQRCRG 165 (699)
T ss_dssp CCCCTTSTTCSSCCSSSSSSSSCSSSSC
T ss_pred cccchhcccCCCCcCCCCcccccccCCC
Confidence 999999999999999999999 89964
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.75 E-value=1.8e-18 Score=156.49 Aligned_cols=89 Identities=38% Similarity=0.805 Sum_probs=81.3
Q ss_pred CCCCC--CcCCC---------CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q psy5809 38 DPYHA--SHCIG---------KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106 (160)
Q Consensus 38 d~~de--~~C~~---------~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~ 106 (160)
|++|| .+|.. .|.+.+|+|.+| +||+..|+|||+.||.||+||.+|.. ..|.. ++|+
T Consensus 154 dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~---------~~C~~--~~f~ 221 (699)
T 1n7d_A 154 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCAV---------ATCRP--DEFQ 221 (699)
T ss_dssp SSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS-CCCSTTCTTSSSCCSTTSCSSCSCCC---------CCCCS--SEEE
T ss_pred CCcccccccCCCcccccCCCCCCCCcceecCCC-ceEechhccCCCCCCCCCcccccCCC---------cccCC--CcEe
Confidence 89999 88853 599999999998 99999999999999999999999974 46888 8999
Q ss_pred CCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCCC
Q psy5809 107 CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLAR 144 (160)
Q Consensus 107 C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~~ 144 (160)
| .+++||+.+|+|||..||.|+|||.+|....
T Consensus 222 C------~~g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~ 253 (699)
T 1n7d_A 222 C------SDGNCIHGSRQCDREYDCKDMSDEVGCVNVT 253 (699)
T ss_dssp S------SSSCEEETTCCSSSCCCSSSSCSSSSTTCCC
T ss_pred c------CCCceeeeecccCCCCCCCCCCccCCCCCCC
Confidence 9 7899999999999999999999999996543
No 5
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.74 E-value=1.4e-19 Score=166.14 Aligned_cols=101 Identities=39% Similarity=0.876 Sum_probs=0.0
Q ss_pred CCCceEEEEEec--------CCCCCCc--CCC-CCCCCcEEeCCC-CeEeeCccccCCcccCCCCCCCCCCCCCCCCCCC
Q psy5809 26 ENSDFCIIFLFL--------DPYHASH--CIG-KCPVGEFLCIGS-CVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAV 93 (160)
Q Consensus 26 ~~~g~~~~~~~~--------d~~de~~--C~~-~C~~~~f~C~~g-~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~ 93 (160)
...|.+|....+ |++||.. |.. .|.+.+|+|.++ ++|||..|+|||+.||.||+||.+|..
T Consensus 31 C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~------- 103 (791)
T 3m0c_C 31 CQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPP------- 103 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCCccC-------
Confidence 345677766443 8999987 643 499999999982 399999999999999999999999975
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809 94 RPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143 (160)
Q Consensus 94 ~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~ 143 (160)
..|.. ++|+| .+|+||+..|+|||+.||.|||||.+|...
T Consensus 104 --~~C~~--~~f~C------~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~ 143 (791)
T 3m0c_C 104 --KTCSQ--DEFRC------HDGKCISRQFVCDSDRDCLDGSDEASCPVL 143 (791)
T ss_dssp --------------------------------------------------
T ss_pred --ccccC--CeEEC------CCCCEECHHHcCCCcccCCCCccccccccc
Confidence 46888 99999 889999999999999999999999999643
No 6
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.71 E-value=5.8e-19 Score=162.14 Aligned_cols=87 Identities=33% Similarity=0.766 Sum_probs=0.0
Q ss_pred cCCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q psy5809 37 LDPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPL 115 (160)
Q Consensus 37 ~d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~ 115 (160)
.|++||.+|.. .|.+.+|+|.+| +||+..|+|||+.||.||+||.+|.. ..|.. .+|+| .+
T Consensus 93 ~dgsDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~---------~~C~~--~~f~C------~~ 154 (791)
T 3m0c_C 93 DNGSDEQGCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPV---------LTCGP--ASFQC------NS 154 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcccCCccCccccCCeEECCCC-CEECHHHcCCCcccCCCCcccccccc---------ccccc--ceecc------CC
Confidence 38999999975 599999999998 99999999999999999999999975 46988 99999 88
Q ss_pred CeEEeCccccCCCCCCCCCCCCC--CCC
Q psy5809 116 FKCLKKSWLCDGEDDCGDFSDEV--NCV 141 (160)
Q Consensus 116 g~CI~~~~~CDG~~DC~DgsDE~--~C~ 141 (160)
++||+..|+|||..||.|||||. +|.
T Consensus 155 ~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~ 182 (791)
T 3m0c_C 155 STCIPQLWACDNDPDCEDGSDEWPQRCR 182 (791)
T ss_dssp ----------------------------
T ss_pred CccccccccCCCCCcCCCCCCcccccCC
Confidence 99999999999999999999997 674
No 7
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.54 E-value=3.6e-15 Score=132.27 Aligned_cols=73 Identities=33% Similarity=0.571 Sum_probs=64.7
Q ss_pred CCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCC
Q psy5809 51 VGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDD 130 (160)
Q Consensus 51 ~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~D 130 (160)
..+|+|.++ .||+..|+|||+.||.|++||.+|.. |+. .+|+| ..+.||+..++|||..|
T Consensus 206 ~~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~-----------c~~--~~~~C------~~~~C~~~~~~cdG~~d 265 (565)
T 2xrc_A 206 DDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKA-----------CQG--KGFHC------KSGVCIPSQYQCNGEVD 265 (565)
T ss_dssp ---CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSS-----------CSS--SCEEE------TTTEEECGGGTTSSSCC
T ss_pred cCeeECCCC-CccCHHHcCCCcccCCCCcccccccc-----------cCC--Cceec------CCCcccCccccCCCccc
Confidence 345999988 99999999999999999999999963 888 89999 88899999999999999
Q ss_pred CCCCCCCCCCCCC
Q psy5809 131 CGDFSDEVNCVLA 143 (160)
Q Consensus 131 C~DgsDE~~C~~~ 143 (160)
|.||+||.+|...
T Consensus 266 C~~gsDE~~C~~~ 278 (565)
T 2xrc_A 266 CITGEDEVGCAGF 278 (565)
T ss_dssp SSSCTTSSSCC--
T ss_pred CCCCccccCcCCc
Confidence 9999999999753
No 8
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.39 E-value=8.1e-15 Score=116.07 Aligned_cols=92 Identities=25% Similarity=0.355 Sum_probs=68.7
Q ss_pred CCCCCCcCCCCCCCCcEEe--CCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC-------
Q psy5809 38 DPYHASHCIGKCPVGEFLC--IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD------- 108 (160)
Q Consensus 38 d~~de~~C~~~C~~~~f~C--~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~------- 108 (160)
+++||.+|. .|++.+|+| .+| +|||..|+|||..||.|||||.+|.. ..|.. .+|+|.
T Consensus 45 d~sDE~~C~-~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~---------~~C~~--~~F~c~~~~~~C~ 111 (215)
T 2gtl_O 45 HRVEELEDP-SCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTL---------PTKAG--DKFIGDVCFDHCT 111 (215)
T ss_dssp HHHHHHSCC-SSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCC---------SSCTT--CEEEEEEEEESSC
T ss_pred cchhhccCC-CCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCC---------CCcCC--CceeeeECCCccc
Confidence 678899994 599999999 566 99999999999999999999999975 23433 344331
Q ss_pred CC-----------------CCCCC--CeEEe-----------CccccCCCCCCCCCCCCCCCCCCC
Q psy5809 109 KG-----------------FCPPL--FKCLK-----------KSWLCDGEDDCGDFSDEVNCVLAR 144 (160)
Q Consensus 109 ~~-----------------~~~~~--g~CI~-----------~~~~CDG~~DC~DgsDE~~C~~~~ 144 (160)
.+ +|... ..||. .+|.|||+.| ++++|+.|.++.
T Consensus 112 ~~~~~~~c~~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~pp~ 175 (215)
T 2gtl_O 112 KRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHPPE 175 (215)
T ss_dssp SSCCSEEEEEEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECCSS
T ss_pred CCCCCCceeeeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceeeecCCC
Confidence 00 01121 24777 8899999999 699999886544
No 9
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.34 E-value=5.8e-13 Score=77.66 Aligned_cols=36 Identities=42% Similarity=1.043 Sum_probs=33.9
Q ss_pred CCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 49 C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
|.+.+|+|.+| +||+..|+|||+.||.|||||.+|.
T Consensus 2 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 2 CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCCCceEcCCC-CeechhhccCCCCCCCCCccccCCC
Confidence 77899999998 9999999999999999999999884
No 10
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.33 E-value=1.1e-12 Score=78.57 Aligned_cols=39 Identities=44% Similarity=1.020 Sum_probs=35.0
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
.|...+|+|.+.++||+..|+|||+.||.|||||.+|..
T Consensus 3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~ 41 (42)
T 1cr8_A 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence 488899999864499999999999999999999999863
No 11
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=77.83 Aligned_cols=39 Identities=38% Similarity=0.735 Sum_probs=35.0
Q ss_pred CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
..|+..+|+|.++++||+..|+|||+.||.|||||.+|.
T Consensus 5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 348889999999339999999999999999999999884
No 12
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.30 E-value=5e-13 Score=90.71 Aligned_cols=63 Identities=32% Similarity=0.570 Sum_probs=50.7
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC--CeEEeCc
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVK---CVPEKECPAVRPVACPQSDSPKMCDKGFCPPL--FKCLKKS 122 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~---C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~--g~CI~~~ 122 (160)
.|++.+|+|.+.+.|||..|+|||+.||.|||||.. |.. ...|.. .+|+| .+ +.||+..
T Consensus 8 ~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~--------~~~C~~--~~f~c------~~~~~~ci~~~ 71 (80)
T 2kny_A 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLY--------NSTGSG--SGSGS------TEELRVRLASH 71 (80)
T ss_dssp CCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSS--------SSTTTT--CSSCH------HHHHHHHTTTT
T ss_pred CCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCC--------CcccCc--ccchh------hhHHHHHHHHH
Confidence 488999999854499999999999999999999985 542 156888 89999 55 5777776
Q ss_pred cccC
Q psy5809 123 WLCD 126 (160)
Q Consensus 123 ~~CD 126 (160)
+...
T Consensus 72 ~~gL 75 (80)
T 2kny_A 72 LRKL 75 (80)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 5543
No 13
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.29 E-value=2.5e-12 Score=76.99 Aligned_cols=40 Identities=35% Similarity=0.656 Sum_probs=34.9
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL 142 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~ 142 (160)
..|.. ++|+| ..+++||+..|+|||+.||.|||||.+|..
T Consensus 2 ~~C~~--~~F~C-----~~~g~CI~~~~~CDg~~DC~DgSDE~~C~~ 41 (42)
T 1cr8_A 2 GGCHT--DEFQC-----RLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41 (42)
T ss_dssp CCSST--TCEEC-----TTTCCEECGGGSSSSSCCSSSSTTTTTCCC
T ss_pred CCCCC--CceEe-----CCCCeEcChhhcCCCCcCCCCCCcccCCCC
Confidence 35777 89999 236899999999999999999999999963
No 14
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.29 E-value=9.6e-13 Score=80.99 Aligned_cols=43 Identities=30% Similarity=0.771 Sum_probs=38.5
Q ss_pred cCCCCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 44 HCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 44 ~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
+|...|.+.+|+|.++.+||+..|+|||+.||.|||||.+|..
T Consensus 2 ~C~~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~ 44 (48)
T 2i1p_A 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44 (48)
T ss_dssp CSCCCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred CCCCCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence 3555688999999988689999999999999999999999974
No 15
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=77.87 Aligned_cols=37 Identities=41% Similarity=0.991 Sum_probs=33.8
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
.|...+|+|.++ +||+..|+|||+.||.|||||.+|.
T Consensus 7 ~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 7 ECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp -CCTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCceEcCCC-CEeChhhccCCCCCCCCCccccCCC
Confidence 488899999998 9999999999999999999999885
No 16
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.27 E-value=2.1e-12 Score=75.31 Aligned_cols=36 Identities=44% Similarity=0.906 Sum_probs=33.2
Q ss_pred CCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 98 C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
|.. ++|+| .+|+||+..|+|||+.||.|||||.+|+
T Consensus 2 C~~--~~f~C------~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 2 CSA--FEFHC------LSGECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp CCT--TCEEC------TTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CCC--CceEc------CCCCeechhhccCCCCCCCCCccccCCC
Confidence 555 89999 7899999999999999999999999984
No 17
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.27 E-value=3.2e-12 Score=77.66 Aligned_cols=37 Identities=49% Similarity=1.118 Sum_probs=34.5
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
.|.+.+|+|.++ +||+..|+|||+.||.|||||..|.
T Consensus 5 ~C~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c~ 41 (45)
T 1d2l_A 5 QCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPAL 41 (45)
T ss_dssp BTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred cCCCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCCc
Confidence 488899999998 9999999999999999999999874
No 18
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.27 E-value=1.7e-12 Score=76.53 Aligned_cols=37 Identities=49% Similarity=1.114 Sum_probs=33.6
Q ss_pred CCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 49 CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 49 C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
|++.+|+|.+ .++|||..|+|||+.||.|||||.+|.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 5688999998 249999999999999999999999985
No 19
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=76.45 Aligned_cols=38 Identities=42% Similarity=0.776 Sum_probs=34.5
Q ss_pred CCCCCCCCCccCCCCCCCCC-CeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPL-FKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~-g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
..|+. ++|+| .+ ++||++.|+|||+.||.|||||.+|.
T Consensus 5 ~~C~~--~~f~C------~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (43)
T 2jm4_A 5 VKCSL--GYFPC------GNITKCLPQLLHCNGVDDCGNQADEDNCG 43 (43)
T ss_dssp CSCCT--TEEEC------SSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred CCCCC--CeeEC------CCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence 56877 89999 66 89999999999999999999999984
No 20
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-12 Score=81.18 Aligned_cols=39 Identities=36% Similarity=0.864 Sum_probs=36.0
Q ss_pred CCCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 47 ~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
..|++.+|+|.+| +||+..|+|||+.||.|||||.+|..
T Consensus 5 ~~C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~~~ 43 (52)
T 2m0p_A 5 ASCLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNCNS 43 (52)
T ss_dssp CSSCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred CCCCCCceECCCC-CEEecCccCCCCCCCCCCCccccchh
Confidence 4588999999998 99999999999999999999999864
No 21
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.24 E-value=2.6e-12 Score=78.68 Aligned_cols=37 Identities=49% Similarity=1.143 Sum_probs=33.8
Q ss_pred CCCCCcEEeC-----CCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCI-----GSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 48 ~C~~~~f~C~-----~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
.|.+.+|+|. ++ +||+..|+|||+.||.|||||.+|.
T Consensus 6 ~C~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp CCSTTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCCC
Confidence 4889999998 55 9999999999999999999999873
No 22
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=76.84 Aligned_cols=38 Identities=37% Similarity=0.848 Sum_probs=33.5
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
..|.. .+|+| .+++||+..|+|||+.||.|||||.+|.
T Consensus 6 ~~C~~--~~f~C------~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 6 KECEK--DQFQC------RNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp --CCT--TEEEC------TTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCC--CceEc------CCCCEeChhhccCCCCCCCCCccccCCC
Confidence 46877 89999 7899999999999999999999999985
No 23
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.23 E-value=5e-12 Score=74.52 Aligned_cols=33 Identities=42% Similarity=0.896 Sum_probs=30.8
Q ss_pred CCccCCCCCCCCC--CeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 103 SPKMCDKGFCPPL--FKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 103 ~~f~C~~~~~~~~--g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
.+|+| .+ ++||+.+|+|||+.||.|||||.+|+
T Consensus 4 ~~f~C------~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 4 HEISC------GAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp TTCCC------SSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred Cceec------CCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 89999 54 89999999999999999999999996
No 24
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.23 E-value=7.5e-12 Score=76.03 Aligned_cols=38 Identities=34% Similarity=0.839 Sum_probs=35.0
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
..|.. ++|+| .+|+||++.|+|||+.||.|||||.+|.
T Consensus 4 ~~C~~--~~F~C------~~g~CI~~~~~CDG~~DC~DgSDE~~c~ 41 (45)
T 1d2l_A 4 PQCQP--GEFAC------ANSRCIQERWKCDGDNDCLDNSDEAPAL 41 (45)
T ss_dssp CBTTB--TCEEE------TTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred CcCCC--CceEc------CCCCeEehhhccCCCCCCCCCCCCCCCc
Confidence 46877 89999 8899999999999999999999999874
No 25
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=99.22 E-value=3.5e-12 Score=78.07 Aligned_cols=43 Identities=35% Similarity=0.744 Sum_probs=33.8
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
..|.. .+|+|.... ..+++||+..|+|||+.||.|||||.+|+
T Consensus 5 ~~C~~--~~F~C~~~~-~~~g~CIp~~~~CDG~~DC~DgSDE~~C~ 47 (47)
T 1k7b_A 5 GSCPP--GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGCG 47 (47)
T ss_dssp -CCST--TEECCSSCT-TSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred CCCCC--CceEcCCCC-CCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence 45877 899991000 01789999999999999999999999884
No 26
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.20 E-value=2.8e-12 Score=86.94 Aligned_cols=57 Identities=40% Similarity=0.839 Sum_probs=47.6
Q ss_pred CceEEEEEec--------CCCCCCcCCC-CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCC--CCCC
Q psy5809 28 SDFCIIFLFL--------DPYHASHCIG-KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDE--VKCV 85 (160)
Q Consensus 28 ~g~~~~~~~~--------d~~de~~C~~-~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE--~~C~ 85 (160)
.|.+|....+ |++||.+|.. .|.+.+|+|.++ +||+..|+|||+.||.||||| .+|.
T Consensus 12 ~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 12 DGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCR 79 (80)
T ss_dssp TSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred CCCEEeeecccCCcccCCCcccccccccccCCceeeECCCC-CEEecccccCCCcCCCCCCCcCcccCC
Confidence 3566665443 8999999864 488999999998 999999999999999999999 6664
No 27
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=3.4e-12 Score=79.82 Aligned_cols=40 Identities=43% Similarity=1.027 Sum_probs=36.4
Q ss_pred CCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809 95 PVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL 142 (160)
Q Consensus 95 ~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~ 142 (160)
+..|+. ++|+| .+|+||++.|+|||..||.|||||.+|..
T Consensus 4 p~~C~~--~~F~C------~nG~CIp~~~~CDG~~DC~DgSDE~~~~~ 43 (52)
T 2m0p_A 4 PASCLD--TQYTC------DNHQCISKNWVCDTDNDCGDGSDEKNCNS 43 (52)
T ss_dssp CCSSCS--SEEEC------TTCCEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred CCCCCC--CceEC------CCCCEEecCccCCCCCCCCCCCccccchh
Confidence 466888 99999 88999999999999999999999998854
No 28
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=76.72 Aligned_cols=37 Identities=43% Similarity=1.014 Sum_probs=33.9
Q ss_pred CCCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 48 ~C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
.|.+.+|+|. ++ +||+..|+|||+.||.|||||.+|.
T Consensus 6 ~C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 6 TCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp TTCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCcccccc
Confidence 4888999996 66 9999999999999999999999874
No 29
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.15 E-value=3e-11 Score=82.13 Aligned_cols=39 Identities=44% Similarity=0.974 Sum_probs=35.4
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCC-CCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE-VNCVL 142 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE-~~C~~ 142 (160)
..|.. ++|+| .+|+||++.|+|||+.||.||||| .+|..
T Consensus 3 ~~C~~--~~f~C------~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~ 42 (82)
T 2fyj_A 3 RTCPP--NQFSC------ASGRCIPISWTCDLDDDCGDRSDESASCAY 42 (82)
T ss_dssp SSSCT--TEEET------TSSCEEETTSSSSCSSSSCSTTTTTSSCCC
T ss_pred CCCCC--CceEe------CCCCEEeccccCCCcccCCCcccccccccc
Confidence 45877 99999 789999999999999999999999 88864
No 30
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.15 E-value=1.1e-11 Score=74.82 Aligned_cols=36 Identities=42% Similarity=0.976 Sum_probs=33.6
Q ss_pred CCCCCcEEeCCCCeEeeCccccCCcccCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84 (160)
Q Consensus 48 ~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C 84 (160)
.|++.+|+|.++ +||+..|+|||+.||.|||||..|
T Consensus 4 ~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 4 SCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCceEeCCC-CeEecCcccCCCCCCCCCCCCCCc
Confidence 488999999998 999999999999999999999864
No 31
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.14 E-value=4.7e-12 Score=77.47 Aligned_cols=44 Identities=34% Similarity=0.722 Sum_probs=34.5
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVL 142 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~ 142 (160)
..|.. .+|+|.... ..+++|||..|+|||+.||.|||||.+|..
T Consensus 3 ~~C~~--~~F~C~~~~-~~~~~CIp~~~~CDG~~DC~DgSDE~~C~~ 46 (47)
T 1jrf_A 3 SRCPP--GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46 (47)
T ss_dssp CCCCC--CCSCSSSCS-CCCTTTSGGGGSSSSSCCSSSSCTTHHHHC
T ss_pred CCCCC--CeeECCCCC-CCCCeEcCHhhcCCCCcCCCCCcccccCCC
Confidence 35777 899991000 016899999999999999999999998853
No 32
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=75.89 Aligned_cols=39 Identities=38% Similarity=0.865 Sum_probs=34.4
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~ 141 (160)
..|.. .+|+| ..+++||+..|+|||+.||.|||||.+|.
T Consensus 5 ~~C~~--~~F~C-----~~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 5 KTCGP--SSFSC-----PGTHVCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp CTTCT--TEEEE-----TTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCC--CcEEc-----CCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence 56877 89999 33889999999999999999999999863
No 33
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=99.14 E-value=1.1e-11 Score=76.14 Aligned_cols=40 Identities=33% Similarity=0.690 Sum_probs=35.5
Q ss_pred CCCCCCCCCccCCCCCCCCCC-eEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLF-KCLKKSWLCDGEDDCGDFSDEVNCVLA 143 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g-~CI~~~~~CDG~~DC~DgsDE~~C~~~ 143 (160)
..|.. .+|+| .++ +||+..|+|||+.||.|||||.+|...
T Consensus 5 ~~C~~--~~F~C------~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~~ 45 (48)
T 2i1p_A 5 LNCTS--AQFKC------ADGSSCINSRYRCDGVYDCRDNSDEAGCPTR 45 (48)
T ss_dssp CCCCS--SSEEC------SSSSCEECGGGSSSSSCCSSSSHHHHSSCSS
T ss_pred CCCCC--CeeEC------CCCCEeCCHhhcCCCCCCCCCCcccccCCCC
Confidence 35777 89999 777 899999999999999999999999653
No 34
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=99.12 E-value=6.5e-12 Score=76.83 Aligned_cols=38 Identities=47% Similarity=1.118 Sum_probs=34.0
Q ss_pred CCCCCcEEeCC----CCeEeeCccccCCcccCCCCCCCCCCC
Q psy5809 48 KCPVGEFLCIG----SCVCIPQEWKCDGDLDCYAGEDEVKCV 85 (160)
Q Consensus 48 ~C~~~~f~C~~----g~~CI~~~~~CDg~~DC~dgsDE~~C~ 85 (160)
.|.+.+|+|.+ .++|||..|+|||+.||.|||||.+|.
T Consensus 4 ~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 48899999984 339999999999999999999999875
No 35
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.09 E-value=4e-12 Score=100.60 Aligned_cols=58 Identities=24% Similarity=0.529 Sum_probs=49.7
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCC-CCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809 68 KCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCP-PLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143 (160)
Q Consensus 68 ~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~-~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~ 143 (160)
+.-...+|.+++||.+|. .|+. ++|+| . .+|+|||+.|+|||..||.|||||.+|+..
T Consensus 36 ~~~~~~~c~d~sDE~~C~-----------~C~~--~~F~C-----~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~ 94 (215)
T 2gtl_O 36 RIRKAGSLRHRVEELEDP-----------SCDE--HEHQC-----GGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94 (215)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------SSCT--TEEEC-----CSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCS
T ss_pred hhcccccCCcchhhccCC-----------CCCC--cceee-----CCCCCcCccccccCCCCCcCCCcccccCCCCC
Confidence 344456899999999995 3888 99999 3 478999999999999999999999999654
No 36
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=99.08 E-value=2.9e-11 Score=72.99 Aligned_cols=37 Identities=38% Similarity=1.025 Sum_probs=33.7
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C 140 (160)
..|+. ++|+| .+++||+..|+|||+.||.|||||.+|
T Consensus 3 ~~C~~--~~F~C------~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 3 HSCSS--TQFKC------NSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSSCT--TEEEC------TTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCC--CceEe------CCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 45777 89999 789999999999999999999999875
No 37
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-10 Score=77.08 Aligned_cols=49 Identities=33% Similarity=0.732 Sum_probs=37.8
Q ss_pred CCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCC---CCCCCcCCCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVN---CVLARKFNDTKL 151 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~---C~~~~~~~~~~~ 151 (160)
..|+. ++|+| .++++|||..|+|||+.||.|||||.+ |..........+
T Consensus 7 ~~C~~--~~f~C-----~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f 58 (80)
T 2kny_A 7 KTCGP--SSFSC-----PGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGS 58 (80)
T ss_dssp CCCSS--SEEEC-----TTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSS
T ss_pred CCCCC--Cceec-----CCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccc
Confidence 46888 89999 337899999999999999999999984 653333333333
No 38
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.78 E-value=3.6e-09 Score=83.75 Aligned_cols=39 Identities=38% Similarity=0.704 Sum_probs=34.4
Q ss_pred CCCCCcEEeCC-CCeEeeCccccCCcccCCCCCCCC--CCCC
Q psy5809 48 KCPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEV--KCVP 86 (160)
Q Consensus 48 ~C~~~~f~C~~-g~~CI~~~~~CDg~~DC~dgsDE~--~C~~ 86 (160)
.|++.+|+|.+ .+.||+..|+|||..||.|||||. +|..
T Consensus 53 ~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 53 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence 48899999975 349999999999999999999997 6753
No 39
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.77 E-value=9.7e-09 Score=91.18 Aligned_cols=85 Identities=29% Similarity=0.630 Sum_probs=61.3
Q ss_pred CcCCCCCCCCcEEeCCCCeEeeCccccCCcccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCeEEe
Q psy5809 43 SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAG-EDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPP-LFKCLK 120 (160)
Q Consensus 43 ~~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~dg-sDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~-~g~CI~ 120 (160)
..|. +|...++|- +.|....+..|.. |... .|+..|.+...|. .+..|. ++|+| . +|+||+
T Consensus 18 s~C~-~C~~~~~R~----R~v~~p~q~gG~~-C~~~l~d~~~C~~~~~c~--~~~~c~---~~f~C------~~~g~Ci~ 80 (554)
T 3ojy_A 18 TDCF-PCQDKKYRH----RSLLQPNKFGGTI-CSGDIWDQASCSSSTTCV--RQAQCG---QDFQC------KETGRCLK 80 (554)
T ss_dssp CCCC-TTTCEEEEE----CCEEECBCSSCCC-CCSCSEEEEECCCCCCC----CCCCS---SSEEC------SSSCCEEC
T ss_pred CCCC-CCCCccEee----EeeccccccCCCC-CCCccccccCCCCCCCCc--ccCCCC---CcCcc------CCCCEEcc
Confidence 4454 466555554 5566666666654 7764 6778897655552 234573 69999 7 899999
Q ss_pred CccccCCCCCCCCCCCCCCCCCCC
Q psy5809 121 KSWLCDGEDDCGDFSDEVNCVLAR 144 (160)
Q Consensus 121 ~~~~CDG~~DC~DgsDE~~C~~~~ 144 (160)
+.|+|||..||.|+|||.+|....
T Consensus 81 ~~~~Cdg~~dC~d~sDE~~C~~~~ 104 (554)
T 3ojy_A 81 RHLVCNGDQDCLDGSDEDDCEDVR 104 (554)
T ss_dssp GGGTTSSSCCSSSCTTSSSCCSCC
T ss_pred cccccCCcccCCCccccccCCCCC
Confidence 999999999999999999997543
No 40
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.76 E-value=4.1e-09 Score=83.24 Aligned_cols=39 Identities=33% Similarity=0.660 Sum_probs=34.0
Q ss_pred CCCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCC--CCCC
Q psy5809 48 KCPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEV--KCVP 86 (160)
Q Consensus 48 ~C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~--~C~~ 86 (160)
.|++.+|+|. +.+.||+..|+|||..||.|||||. +|..
T Consensus 52 ~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~ 93 (220)
T 2gtl_N 52 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93 (220)
T ss_dssp SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCG
T ss_pred CCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCC
Confidence 4888999995 2349999999999999999999996 8875
No 41
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.73 E-value=1.4e-08 Score=89.81 Aligned_cols=83 Identities=29% Similarity=0.717 Sum_probs=58.5
Q ss_pred CcCCCCCCCCcEEeCCCCeEeeCccccCCcccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCeEEe
Q psy5809 43 SHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCY-AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPP-LFKCLK 120 (160)
Q Consensus 43 ~~C~~~C~~~~f~C~~g~~CI~~~~~CDg~~DC~-dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~-~g~CI~ 120 (160)
..|. +|...++|- +.|....+..|. .|+ ...|+..|.+...|. .+..| .+|+| . +|+||+
T Consensus 20 s~C~-~C~~~~~R~----R~v~~p~q~gG~-~C~~~l~d~~~C~~~~~C~--~~~~c----~~f~C------~~~g~Ci~ 81 (537)
T 3ojy_B 20 TTCD-PCQKKRYRY----AYLLQPSQFHGE-PCNFSDKEVEDCVTNRPCR--SQVRC----EGFVC------AQTGRCVN 81 (537)
T ss_dssp CCCB-TTTTEEEEE----CCEEECEETTCC-CCCSCSEEEEECCCCCCCC--CCSCC----SSEEC------TTTCCEEC
T ss_pred CCCC-CCCCceEee----eeeccccccCCC-cCccchhhhccCCCccccc--cCCCC----CccCc------CCCCcEee
Confidence 3454 365555543 455555555544 455 457888887654552 23446 48999 7 899999
Q ss_pred CccccCCCCCCCCCCCCCCCCCC
Q psy5809 121 KSWLCDGEDDCGDFSDEVNCVLA 143 (160)
Q Consensus 121 ~~~~CDG~~DC~DgsDE~~C~~~ 143 (160)
..|+|||..||.|+|||.+|...
T Consensus 82 ~~~~Cdg~~dC~d~sdE~~c~~~ 104 (537)
T 3ojy_B 82 RRLLCNGDNDCGDQSDEANCRRI 104 (537)
T ss_dssp GGGTTSSSCCSSSSCTTSSCSSC
T ss_pred ccccCCCCCCCCCccccccCCCC
Confidence 99999999999999999999754
No 42
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=98.65 E-value=6.8e-09 Score=91.97 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=48.5
Q ss_pred cEEeCCCCeEeeCccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCC
Q psy5809 53 EFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCG 132 (160)
Q Consensus 53 ~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~ 132 (160)
-+.|..+ .++...+.||+..+|.+.+++ | |.. .+|+| .++.||+..++|||+.||.
T Consensus 175 l~~C~~~-~~~~~~h~~DagV~C~~~~~~--c-------------~~~--~~~~C------~~~~ci~~~~~Cdg~~dC~ 230 (565)
T 2xrc_A 175 LAECTFT-KRRTMGYQDFADVVCYTQKAD--S-------------PMD--DFFQC------VNGKYISQMKACDGINDCG 230 (565)
T ss_dssp GGGSEEE-CCCCCSSCCCCEEEBCCC--------------------------CBC------TTSCBCCTTSTTSSSCCSS
T ss_pred hhhcccC-cccccccccCCceeccccccC--C-------------CCc--CeeEC------CCCCccCHHHcCCCcccCC
Confidence 3456555 567777889999999876543 2 222 67999 8899999999999999999
Q ss_pred CCCCCCCCCC
Q psy5809 133 DFSDEVNCVL 142 (160)
Q Consensus 133 DgsDE~~C~~ 142 (160)
|+|||.+|..
T Consensus 231 d~sDE~~C~~ 240 (565)
T 2xrc_A 231 DQSDELCCKA 240 (565)
T ss_dssp SSSSSSSBSS
T ss_pred CCcccccccc
Confidence 9999999853
No 43
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.60 E-value=1.6e-08 Score=80.05 Aligned_cols=41 Identities=37% Similarity=0.763 Sum_probs=35.3
Q ss_pred CCCCCCCCCccCCCCCCCC-CCeEEeCccccCCCCCCCCCCCCC--CCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCPP-LFKCLKKSWLCDGEDDCGDFSDEV--NCVLA 143 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~~-~g~CI~~~~~CDG~~DC~DgsDE~--~C~~~ 143 (160)
..|+. .+|+| .+ +|.||+..|+|||..||.|||||. +|...
T Consensus 52 ~~C~~--~~F~C-----~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~ 95 (217)
T 2gtl_M 52 HHCDE--HESEC-----RGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLN 95 (217)
T ss_dssp CCCCT--TEEEC-----SSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCG
T ss_pred CCCCC--Cceec-----CCCCCcEechhhccCCCCCCCCCCccccCcCCCC
Confidence 45887 89999 32 589999999999999999999998 78654
No 44
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.57 E-value=2.8e-08 Score=78.52 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=35.1
Q ss_pred CCCCCCCCCccCCCCCCC-CCCeEEeCccccCCCCCCCCCCCCC--CCCCC
Q psy5809 96 VACPQSDSPKMCDKGFCP-PLFKCLKKSWLCDGEDDCGDFSDEV--NCVLA 143 (160)
Q Consensus 96 ~~C~~~~~~f~C~~~~~~-~~g~CI~~~~~CDG~~DC~DgsDE~--~C~~~ 143 (160)
..|.. .+|+| . .+|.||+..|+|||..||.|||||. +|...
T Consensus 51 ~~C~~--~eFqC-----~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~ 94 (220)
T 2gtl_N 51 THCEK--RTFQC-----GGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTS 94 (220)
T ss_dssp CSSCT--TEEEC-----CSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGG
T ss_pred CCCCC--CccCc-----CCCCCcEeCcceecCCCCCCCCCCccCcccCCCC
Confidence 45777 89999 2 2589999999999999999999997 88655
No 45
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=83.71 Aligned_cols=34 Identities=32% Similarity=0.773 Sum_probs=32.3
Q ss_pred CcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 52 GEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 52 ~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
.+|+|. +| +||+..|+|||..||.|+|||.+|..
T Consensus 69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~c~~ 103 (537)
T 3ojy_B 69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEANCRR 103 (537)
T ss_dssp SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSSCSS
T ss_pred CccCcCCCC-cEeeccccCCCCCCCCCccccccCCC
Confidence 799999 77 99999999999999999999999975
No 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.28 E-value=4.4e-07 Score=80.55 Aligned_cols=36 Identities=36% Similarity=0.905 Sum_probs=33.4
Q ss_pred CCCCcEEeC-CCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 49 C~~~~f~C~-~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
|+ .+|+|. +| +||+..|+|||..||.|+|||.+|..
T Consensus 66 c~-~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~ 102 (554)
T 3ojy_A 66 CG-QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCED 102 (554)
T ss_dssp CS-SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCS
T ss_pred CC-CcCccCCCC-EEcccccccCCcccCCCccccccCCC
Confidence 63 799999 77 99999999999999999999999975
No 47
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.85 E-value=2.1e-05 Score=73.31 Aligned_cols=61 Identities=31% Similarity=0.649 Sum_probs=42.9
Q ss_pred ccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCeEEeCccccCCCCCCCCCCCCCCCCCC
Q psy5809 73 LDCY-AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLA 143 (160)
Q Consensus 73 ~DC~-dgsDE~~C~~~~~c~~~~~~~C~~~~~~f~C~~~~~~~~g~CI~~~~~CDG~~DC~DgsDE~~C~~~ 143 (160)
..|. ...++..|.....|+.. ...|. +.|+| .+|+||++.|+|||..||.|+|||.+|...
T Consensus 94 ~~C~g~~~e~~~C~~~~~Cp~~-~~~C~---~~F~C------~~g~ci~~~~~c~g~~dC~d~sde~~C~~~ 155 (913)
T 3t5o_A 94 QPCTAPLVAFQPCIPSKLCKIE-EADCK---NKFRC------DSGRCIARKLECNGENDCGDNSDERDCGRT 155 (913)
T ss_dssp CCCCSCSBCCEECCCSSSSCCC-CCCCS---SEEEC------TTSCEEEGGGSSSSSCCSSSSGGGTTCSSC
T ss_pred CCCCCCcccccccCCccCCCcc-ccCcc---ccccc------CCCceEccceecCCcccCCCccccccCCCC
Confidence 3455 33444557643233221 12453 57999 789999999999999999999999999853
No 48
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.50 E-value=4e-05 Score=71.41 Aligned_cols=34 Identities=32% Similarity=0.770 Sum_probs=32.1
Q ss_pred CcEEeCCCCeEeeCccccCCcccCCCCCCCCCCCC
Q psy5809 52 GEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86 (160)
Q Consensus 52 ~~f~C~~g~~CI~~~~~CDg~~DC~dgsDE~~C~~ 86 (160)
.+|+|.+| +||+..|+|||..||.|+|||.+|..
T Consensus 121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C~~ 154 (913)
T 3t5o_A 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDCGR 154 (913)
T ss_dssp SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred cccccCCC-ceEccceecCCcccCCCccccccCCC
Confidence 57999998 99999999999999999999999975
No 49
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=70.54 E-value=4.2 Score=27.59 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.2
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEecCC
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFLDP 39 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~d~ 39 (160)
++.+++.|+++.+....||.+.|.++..
T Consensus 85 ~n~l~v~F~Sd~~~~~~GF~~~y~~~~~ 112 (116)
T 1spp_B 85 ANTMTIKYNRISGNSSSPFLIYFYGSSP 112 (116)
T ss_dssp SSEEEEEEEESSCSCCCCCEEEEEEECC
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeCC
Confidence 5678999999999999999999987643
No 50
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=69.72 E-value=5 Score=26.90 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=23.6
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEec
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFL 37 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~ 37 (160)
++.+++.|+++.+....||.+.|.+.
T Consensus 81 ~n~l~v~F~Sd~~~~~~GF~~~y~~~ 106 (109)
T 1spp_A 81 SSGMTVKYKRDSGHPASPYEIIFLRD 106 (109)
T ss_dssp CTTCEEEEEECTTCCCCCCEEEEEEE
T ss_pred CCEEEEEEEeCCCCCCCCEEEEEEEe
Confidence 78899999999999999999999764
No 51
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=66.28 E-value=5.7 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.6
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEecCCC
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFLDPY 40 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~d~~ 40 (160)
++.++++|+++......||.+.|.+++..
T Consensus 94 ~n~l~v~F~Sd~~~~~~GF~a~y~~~~~~ 122 (149)
T 2wno_A 94 GNVMTLKFLSDASVTAGGFQIKYVAMDPV 122 (149)
T ss_dssp SSEEEEEEECCSSCCCCEEEEEEEEECC-
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECCC
Confidence 56689999999999999999999987553
No 52
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=64.69 E-value=6 Score=26.62 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=22.8
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEec
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFL 37 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~ 37 (160)
++.+++.|+++.+....||.+.|...
T Consensus 86 ~n~l~v~F~Sd~~~~~~GF~~~y~~~ 111 (114)
T 1sfp_A 86 GSIMTVKYIREPEHPASFYEVLYFQD 111 (114)
T ss_dssp SSEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred CCeEEEEEEECCCCCCCCEEEEEEEE
Confidence 57789999999999999999999764
No 53
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=55.16 E-value=9.4 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=23.2
Q ss_pred eeCCeEEEEecCCCCCC--CceEEEEEecCC
Q psy5809 11 VSDKSTYTNFSKNGNEN--SDFCIIFLFLDP 39 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~--~g~~~~~~~~d~ 39 (160)
.++.++++|+++.+... .||.+.|..++.
T Consensus 87 ~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~d~ 117 (159)
T 1nzi_A 87 PYNKLQVIFKSDFSNEERFTGFAAYYVATDI 117 (159)
T ss_dssp SSSEEEEEEEECSCCTTCCCEEEEEEEEEEC
T ss_pred cCCeEEEEEEecCccCcccccceeeeecccC
Confidence 35678899999977765 999999987653
No 54
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=41.63 E-value=21 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.6
Q ss_pred eeCCeEEEEecCCCCCCCceEEEEEec
Q psy5809 11 VSDKSTYTNFSKNGNENSDFCIIFLFL 37 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~~g~~~~~~~~ 37 (160)
.++.++++|+++.+....||.+.|.+.
T Consensus 252 ~~n~~~i~F~SD~~~~~~GF~~~y~~~ 278 (361)
T 4aqb_A 252 QSHSVLILFHSDNSGENRGWRLSYRAA 278 (361)
T ss_dssp SCSEEEEEEECCSCCCCCBCEEEEEEE
T ss_pred cCCeEEEEEEeCCCCCccceEEEEEEc
Confidence 356788999999999999999999875
No 55
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=41.18 E-value=22 Score=30.98 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=25.7
Q ss_pred eeCCeEEEEecCCCCCCCceEEEEEecCCC
Q psy5809 11 VSDKSTYTNFSKNGNENSDFCIIFLFLDPY 40 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~~g~~~~~~~~d~~ 40 (160)
.++.+.++|++|.+....||.+.|.+++..
T Consensus 221 ~~n~l~i~F~SD~s~~~~GF~a~y~~v~~~ 250 (577)
T 4gz9_A 221 SSGVLSMVFYTDSAIAKEGFSANYSVLQSS 250 (577)
T ss_dssp CSSEEEEEEECCSSCCCCEEEEEEEECCCC
T ss_pred eCCEEEEEEEECCCCCCceEEEEEEEEccc
Confidence 356788999999999999999999988653
No 56
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=39.85 E-value=22 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=22.6
Q ss_pred eeCCeEEEEecCCCCCC--CceEEEEEecC
Q psy5809 11 VSDKSTYTNFSKNGNEN--SDFCIIFLFLD 38 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~--~g~~~~~~~~d 38 (160)
.++.++++|+++.+... .||.+.|...+
T Consensus 94 ~~n~l~v~F~Sd~~~~~~~~Gf~~~~~~~d 123 (170)
T 1szb_A 94 LGSSLDITFRSDYSNEKPFTGFEAFYAAED 123 (170)
T ss_dssp SSSEEEEEEECCSCCSSCCCEEEEEEEEEE
T ss_pred eCCeEEEEEeccccccCcCcCceeeeeccc
Confidence 35678899999987775 99999987654
No 57
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=29.50 E-value=46 Score=27.72 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=24.4
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEecCC
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFLDP 39 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~d~ 39 (160)
++.+++.|+++.+....||.+.|.++..
T Consensus 104 ~n~l~v~F~Sd~~~~~~GF~~~y~~~~~ 131 (450)
T 2qqm_A 104 SGILSMVFYTDSAIAKEGFSANYSVLQS 131 (450)
T ss_dssp SSEEEEEEECCSSCCCCEEEEEEEECCC
T ss_pred CCEEEEEEEeCCccccCCeEEEEecccc
Confidence 4668899999999999999999998754
No 58
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=28.26 E-value=42 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=23.1
Q ss_pred eeCCeEEEEecCCCCCC--CceEEEEEecCC
Q psy5809 11 VSDKSTYTNFSKNGNEN--SDFCIIFLFLDP 39 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~--~g~~~~~~~~d~ 39 (160)
.++.+++.|+++.+... .||.+.|.+++.
T Consensus 91 ~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~~~ 121 (278)
T 3dem_A 91 PGSFMSITFRSDFSNEERFTGFDAHYMAVDV 121 (278)
T ss_dssp SSSEEEEEEEECSCCCSCCCEEEEEEEEEEC
T ss_pred cCCeEEEEEecCcccccccceeEEEEEEecc
Confidence 35678899999977664 799999988754
No 59
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=27.93 E-value=48 Score=27.71 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=24.9
Q ss_pred eeCCeEEEEecCCCCCCCceEEEEEecCC
Q psy5809 11 VSDKSTYTNFSKNGNENSDFCIIFLFLDP 39 (160)
Q Consensus 11 ~~~~~~~~~~s~~~~~~~g~~~~~~~~d~ 39 (160)
.++.+++.|+++.+....||.+.|..++.
T Consensus 100 ~~n~l~v~F~Sd~~~~~~GF~~~y~~~~~ 128 (460)
T 2qqo_A 100 STGILSLTFHTDMAVAKDGFSARYYLVHQ 128 (460)
T ss_dssp CSSEEEEEEECCSSCCCCEEEEEEEEECC
T ss_pred eCCEEEEEEeccceeecCcEEEEEEEEec
Confidence 35678899999999999999999988754
No 60
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=27.74 E-value=41 Score=26.88 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.2
Q ss_pred eCCeEEEEecCCCCCC--CceEEEEEecCC
Q psy5809 12 SDKSTYTNFSKNGNEN--SDFCIIFLFLDP 39 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~--~g~~~~~~~~d~ 39 (160)
++.++++|++|.+... .||.+.|.+++.
T Consensus 92 ~n~l~v~F~SD~s~~~~~~GF~a~y~~~~~ 121 (361)
T 4aqb_A 92 GSFMSITFRSDFSNEERFTGFDAHYMAVDV 121 (361)
T ss_dssp SSEEEEEEEECSCCCSCCCEEEEEEEEEEC
T ss_pred CCEeEEEEEeCCcccccccccccceeeccc
Confidence 3567899999977766 599999988743
No 61
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=26.32 E-value=44 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=20.8
Q ss_pred eCCeEEEEecCCCCCC--CceEEEEEecCC
Q psy5809 12 SDKSTYTNFSKNGNEN--SDFCIIFLFLDP 39 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~--~g~~~~~~~~d~ 39 (160)
++.+++.|+++.+... .||.+.|.+++.
T Consensus 91 ~n~l~v~F~Sd~s~~~~~~GF~a~y~~~~~ 120 (286)
T 1nt0_A 91 GPSLKVTFHSDYSNEKPFTGFEAFYAAEDV 120 (286)
T ss_dssp SSEEEEEEECCC----CCCEEEEEEEEEEC
T ss_pred CCEEEEEEEeCCcCCcCcccEEEEEEeccC
Confidence 5788999999987765 999999998743
No 62
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=20.11 E-value=82 Score=27.28 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.4
Q ss_pred eCCeEEEEecCCCCCCCceEEEEEecC
Q psy5809 12 SDKSTYTNFSKNGNENSDFCIIFLFLD 38 (160)
Q Consensus 12 ~~~~~~~~~s~~~~~~~g~~~~~~~~d 38 (160)
++.+++.|+++......||.+.|..++
T Consensus 98 ~n~l~v~F~SD~s~~~~GF~a~y~~~~ 124 (577)
T 4gz9_A 98 GPFLFIKFVSDYETHGAGFSIRYEIFK 124 (577)
T ss_dssp SSEEEEEEECCSSCCCCBCEEEEEECC
T ss_pred CCeEEEEEEECCCCCCCCeEEEEEEee
Confidence 456889999999999999999998764
Done!