RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5809
(160 letters)
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 67.7 bits (166), Expect = 4e-16
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
CP +F C S CIP W CD D DC DE C P + C+
Sbjct: 5 CPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTC-------FPLTQFT--CN 54
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
G +C+ +W CD ++DCGD SDE C
Sbjct: 55 NG------RCININWRCDNDNDCGDNSDEAGC 80
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 61.9 bits (151), Expect = 8e-14
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C EF C CI +++ CD D DC G DE C P C + C+
Sbjct: 3 CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASC-PVLTCG----------PASFQCN 50
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C+ + W CD + DC D SDE
Sbjct: 51 SS------TCIPQLWACDNDPDCEDGSDEWPQ 76
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 64.1 bits (155), Expect = 8e-13
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
+C EF C CI +W CDG +C G DE + V C D
Sbjct: 20 VGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCL-------SVTCKSGD-- 69
Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C +C+ + W CDG+ DC + SDE C
Sbjct: 70 FSCGGRVN----RCIPQFWRCDGQVDCDNGSDEQGC 101
Score = 57.9 bits (139), Expect = 9e-11
Identities = 36/94 (38%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106
C F C S CIPQ W CD D DC G DE R + Q DS
Sbjct: 143 LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC-------RGLYVFQGDSSPC 194
Query: 107 CDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
F +C+ SW CDG DC D SDE NC
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 228
Score = 57.2 bits (137), Expect = 2e-10
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C G+F C G CIPQ W+CDG +DC G DE C P K C
Sbjct: 65 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC-PPKTCS---------------- 107
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
F KC+ + ++CD + DC D SDE +C
Sbjct: 108 QDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 140
Score = 53.3 bits (127), Expect = 5e-09
Identities = 25/92 (27%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C EF C CI +CD + DC DEV CV C C
Sbjct: 233 CRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG------- 284
Query: 109 KGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ +C+ DC D+SDE
Sbjct: 285 --------ECITLDKVCNMARDCRDWSDEPIK 308
Score = 52.1 bits (124), Expect = 1e-08
Identities = 32/102 (31%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 39 PYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC 98
Y C EF C S CI W+CDG DC DE C C
Sbjct: 184 LYVFQGDSSPCSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC-AVATCRP------ 235
Query: 99 PQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
F C+ S CD E DC D SDEV C
Sbjct: 236 ----------DEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
Score = 51.8 bits (123), Expect = 1e-08
Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 1/103 (0%)
Query: 38 DPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVA 97
D + +F C S CI + C+ DC DE
Sbjct: 263 DEVGCVNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 321
Query: 98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C + P L C+ D+C D
Sbjct: 322 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 364
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 62.5 bits (151), Expect = 2e-12
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
+C EF C CI +W CDG +C G DE + +C
Sbjct: 5 RCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSC--------- 54
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+ +C+ + W CDG+ DC + SDE C
Sbjct: 55 ----GGRVNRCIPQFWRCDGQVDCDNGSDEQGC 83
Score = 56.0 bits (134), Expect = 6e-10
Identities = 36/96 (37%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSP 104
+ C F C S CIPQ W CD D DC G DE R + Q DS
Sbjct: 123 PVLTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC-------RGLYVFQGDSS 174
Query: 105 KMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
F +C+ SW CDG DC D SDE NC
Sbjct: 175 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 210
Score = 55.2 bits (132), Expect = 9e-10
Identities = 34/93 (36%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 49 CPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C G+F C G CIPQ W+CDG +DC G DE C P K C
Sbjct: 47 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC-PPKTCS---------------- 89
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
F KC+ + ++CD + DC D SDE +C
Sbjct: 90 QDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 122
Score = 54.8 bits (131), Expect = 1e-09
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 16/97 (16%)
Query: 44 HCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDS 103
+ C EF C CI +CD + DC DEV CV C C
Sbjct: 210 CAVATCRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSG-- 266
Query: 104 PKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ +C+ DC D+SDE
Sbjct: 267 -------------ECITLDKVCNMARDCRDWSDEPIK 290
Score = 52.5 bits (125), Expect = 8e-09
Identities = 31/103 (30%), Positives = 34/103 (33%), Gaps = 18/103 (17%)
Query: 39 PYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVAC 98
Y C EF C+ CI W+CDG DC DE C
Sbjct: 166 LYVFQGDSSPCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC-------------- 210
Query: 99 PQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCV 141
F C+ S CD E DC D SDEV CV
Sbjct: 211 ---AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 250
Score = 47.9 bits (113), Expect = 3e-07
Identities = 18/112 (16%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Query: 38 DPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVA 97
D + +F C S CI + C+ DC DE
Sbjct: 245 DEVGCVNVTLCEGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 303
Query: 98 CPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDT 149
C + P L C+ D+C D + +
Sbjct: 304 CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 355
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 51.5 bits (123), Expect = 2e-08
Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 18/80 (22%)
Query: 62 CIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKK 121
C + + G D + A D C G
Sbjct: 178 CTFTKRRTMGYQDFADVVCYTQK------------ADSPMDDFFQCVNGKYISQ------ 219
Query: 122 SWLCDGEDDCGDFSDEVNCV 141
CDG +DCGD SDE+ C
Sbjct: 220 MKACDGINDCGDQSDELCCK 239
Score = 51.5 bits (123), Expect = 2e-08
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 19/93 (20%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
P+ +F + I Q CDG DC DE+ C
Sbjct: 202 DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCK-------------------ACQ 242
Query: 108 DKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
KGF C+ + C+GE DC DEV C
Sbjct: 243 GKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Score = 31.4 bits (71), Expect = 0.12
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C F C S VCIP +++C+G++DC GEDEV C +
Sbjct: 240 ACQGKGFHC-KSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERR 298
Query: 108 DKGFCPPLFKC 118
P C
Sbjct: 299 RIKSLLPKLSC 309
Score = 28.0 bits (62), Expect = 1.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 107 CDKGFCPPLFKCLKKSWLCDGEDDC 131
CDK FC P +C++ + +C C
Sbjct: 25 CDKVFCQPWQRCIEGTCVCKLPYQC 49
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 46.2 bits (110), Expect = 4e-08
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C F C G+ VC+P+ W CDGD DC G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 38.1 bits (89), Expect = 5e-05
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
CP C+ + WLCDG+ DC D +DE
Sbjct: 14 CPGTHVCVPERWLCDGDKDCADGADESIA 42
>1cr8_A Protein (LOW density lipoprotein receptor related protein);
ligand binding, calcium binding, LDLR, LRP, lipid
binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 45.7 bits (109), Expect = 6e-08
Identities = 17/36 (47%), Positives = 19/36 (52%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C EF C +CIP W+CDGD DC DE C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 39.6 bits (93), Expect = 1e-05
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 104 PKMCDKG--FCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
P C C C+ W CDG+ DC D SDE +C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 44.7 bits (106), Expect = 2e-07
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
KC +G F C C+PQ C+G DC DE C
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.3 bits (92), Expect = 2e-05
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 107 CDKGF--CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
C G+ C + KCL + C+G DDCG+ +DE NC
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 42.7 bits (101), Expect = 8e-07
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86
+ C +F C CI ++CDG DC DE C
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 37.7 bits (88), Expect = 6e-05
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
C+ + CDG DC D SDE C
Sbjct: 19 SCINSRYRCDGVYDCRDNSDEAGC 42
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 42.3 bits (100), Expect = 9e-07
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C + E C S CIP W+CDG+ DC +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 36.9 bits (86), Expect = 9e-05
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDGE+DC DE NC
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 42.5 bits (100), Expect = 1e-06
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 47 GKCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
G CP G+F C C PQ+W CDG DC G DE C
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 37.9 bits (88), Expect = 6e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C + WLCDG DC D DE C
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDEWGC 46
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding
module, COMP repeat, calcium, cell membrane, coated
PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 42.9 bits (101), Expect = 2e-06
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVP 86
C F C G+ VC+P+ W CDGD DC G DE
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46
Score = 36.0 bits (83), Expect = 6e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 112 CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
CP C+ + WLCDG+ DC D +DE
Sbjct: 16 CPGTHVCVPERWLCDGDKDCADGADESIA 44
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800
and PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 41.7 bits (98), Expect = 2e-06
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 48 KCPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
+CP G+F C C PQ+W CDG DC G DE C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 38.2 bits (89), Expect = 4e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C + WLCDG DC D DE C
Sbjct: 21 ECYPQDWLCDGHPDCDDGRDEWGC 44
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 40.7 bits (96), Expect = 4e-06
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ W CD +DDC D SDE +C
Sbjct: 19 RCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 39.6 bits (93), Expect = 1e-05
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 42 ASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
S +C +F C + CIP W+CD D DC DE C
Sbjct: 1 GSGPAKECEKDQFQC-RNERCIPSVWRCDEDDDCLDHSDEDDC 42
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 40.4 bits (95), Expect = 7e-06
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ + W CDG++DCGD+SDE +
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHA 39
Score = 38.0 bits (89), Expect = 5e-05
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C +F C S CIP+ W CDGD DC DE
Sbjct: 5 CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHA 39
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 40.4 bits (95), Expect = 7e-06
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+++ W CDG++DC D SDE +
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 39.6 bits (93), Expect = 1e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
+C GEF C + CI + WKCDGD DC DE +
Sbjct: 2 SPPQCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPAL 41
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 39.5 bits (93), Expect = 1e-05
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDG DC D SDE NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDEENC 36
Score = 39.5 bits (93), Expect = 1e-05
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C EF C S CI W+CDG DC DE C
Sbjct: 2 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC 36
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 37.7 bits (86), Expect = 8e-04
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 19/85 (22%)
Query: 59 SCVCIPQE--WKCDGDL-DCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPL 115
S + + C GD+ D + CV + +C C
Sbjct: 32 SLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQC----------------GQDFQCKET 75
Query: 116 FKCLKKSWLCDGEDDCGDFSDEVNC 140
+CLK+ +C+G+ DC D SDE +C
Sbjct: 76 GRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 35.7 bits (81), Expect = 0.004
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 38 DPYHASHCIGKCPVGE-FLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPV 96
++ C+ + G+ F C + C+ + C+GD DC G DE C +
Sbjct: 53 SCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAI------ 106
Query: 97 ACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDE 137
+ C + P + + ++D D
Sbjct: 107 -------DEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDA 140
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 37.2 bits (85), Expect = 0.001
Identities = 16/77 (20%), Positives = 20/77 (25%), Gaps = 13/77 (16%)
Query: 48 KCPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKM 106
C E C CI CDG+ DC G DE P C + +
Sbjct: 53 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE------------DPETCSLNITHVG 100
Query: 107 CDKGFCPPLFKCLKKSW 123
C +
Sbjct: 101 SSYTGLATWTSCEDLNP 117
Score = 32.6 bits (73), Expect = 0.037
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 117 KCLKKSWLCDGEDDCGDFSDE 137
+C+ CDGE DC D SDE
Sbjct: 67 ECIHDLLFCDGEKDCRDGSDE 87
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 36.7 bits (84), Expect = 0.001
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVLARKFNDT 149
+C+ K ++CDG +DC + DE +C L K D
Sbjct: 68 QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDK 100
Score = 32.5 bits (73), Expect = 0.039
Identities = 19/96 (19%), Positives = 24/96 (25%), Gaps = 31/96 (32%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMC 107
C E C CI + + CDG DC GEDE C
Sbjct: 55 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPT------------------- 95
Query: 108 DKGFCPPLFKCLKKSWLCDGEDD-CGDFSDEVNCVL 142
++ D D C E +
Sbjct: 96 ----------KAGDKFIGDVCFDHCTKRRPEHMTLA 121
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 36.0 bits (82), Expect = 0.002
Identities = 17/102 (16%), Positives = 20/102 (19%), Gaps = 9/102 (8%)
Query: 48 KCPVGEFLCIG-SCVCIPQEWKCDGDLDCYAGEDE--------VKCVPEKECPAVRPVAC 98
C F C G CI CDG DC+ DE V C
Sbjct: 52 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGC 111
Query: 99 PQSDSPKMCDKGFCPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
+ K + N
Sbjct: 112 LAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENV 153
Score = 30.6 bits (68), Expect = 0.16
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+ +CDG DC + DE V
Sbjct: 66 ECISDLLVCDGHKDCHNAHDEDPDV 90
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 30.9 bits (69), Expect = 0.17
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 16/83 (19%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCD 108
C V C C I +C ED C EC +
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA----------------E 49
Query: 109 KGFCPPLFKCLKKSWLCDGEDDC 131
+G+C + ++ C E
Sbjct: 50 EGYCSQGCTNSEGAFQCWCEAGY 72
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 29.1 bits (64), Expect = 0.76
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 59 SCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKC 118
S + Q G C+P K C C F +C
Sbjct: 84 SVLRPSQ---FGGQPCTAPLVAFQPCIPSKLCK----------IEEADCKNKFRCDSGRC 130
Query: 119 LKKSWLCDGEDDCGDFSDEVNC 140
+ + C+GE+DCGD SDE +C
Sbjct: 131 IARKLECNGENDCGDNSDERDC 152
Score = 26.4 bits (57), Expect = 5.2
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 45 CIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSD 102
I + S CI ++ +C+G+ DC DE C K + P
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPSVQ 170
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 28.7 bits (63), Expect = 0.80
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 16/72 (22%)
Query: 69 CDGDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDGE 128
C+ ++ CV + C S C+ C +C+ + LC+G+
Sbjct: 46 CNFSD-----KEVEDCVTNRPCR-----------SQVRCEGFVCAQTGRCVNRRLLCNGD 89
Query: 129 DDCGDFSDEVNC 140
+DCGD SDE NC
Sbjct: 90 NDCGDQSDEANC 101
Score = 27.5 bits (60), Expect = 2.1
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 40 YHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCVPEKECPAVRPVACP 99
C + F+C + C+ + C+GD DC DE C +
Sbjct: 57 VTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYW 116
Query: 100 QSD 102
Sbjct: 117 GIG 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 4.9
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 32/109 (29%)
Query: 72 DLDCYAGEDEVKCV-PEKECPAVRPVACPQSDSP------KMCDKG------FCPPLFKC 118
+ DC +D K + ++E + + + S + K F + +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKF---VEEV 86
Query: 119 LKK--SWLC--------DGEDDCGDFSDEVNCVLARKFNDTKLSAEDFI 157
L+ +L + ++ + R +ND ++ A+ +
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNV 131
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 25.6 bits (55), Expect = 7.2
Identities = 6/65 (9%), Positives = 12/65 (18%), Gaps = 4/65 (6%)
Query: 24 GNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCI----GSCVCIPQEWKCDGDLDCYAGE 79
I + + + + + + C GD G
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203
Query: 80 DEVKC 84
D
Sbjct: 204 DVRDA 208
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.483
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,415,023
Number of extensions: 136548
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 133
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)