RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5809
(160 letters)
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 42.5 bits (100), Expect = 4e-07
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 47 GKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
G C EF C +CIP W+CDGD DC DE C
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 37.9 bits (88), Expect = 2e-05
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 104 PKMCDKGF--CPPLFKCLKKSWLCDGEDDCGDFSDEVNC 140
P C C C+ W CDG+ DC D SDE +C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 39.0 bits (91), Expect = 6e-06
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C G+F C CIPQ W+CDG +DC G DE C
Sbjct: 5 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41
Score = 37.1 bits (86), Expect = 3e-05
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ + W CDG+ DC + SDE C
Sbjct: 18 RCIPQFWRCDGQVDCDNGSDEQGC 41
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 38.7 bits (90), Expect = 8e-06
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C + E C S CIP W+CDG+ DC +GEDE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 36.4 bits (84), Expect = 7e-05
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDGE+DC DE NC
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENC 37
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 41
Score = 38.6 bits (90), Expect = 1e-05
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVL 142
+C+ K ++CDG +DC + DE +C L
Sbjct: 16 QCISKLFVCDGHNDCRNGEDEKDCTL 41
Score = 37.1 bits (86), Expect = 3e-05
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C E C CI + + CDG DC GEDE C
Sbjct: 3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT 40
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.5 bits (90), Expect = 1e-05
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ S CD E DC D SDEV CV
Sbjct: 14 NCIHGSRQCDREYDCKDMSDEVGCV 38
Score = 38.1 bits (89), Expect = 2e-05
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C EF C CI +CD + DC DEV CV
Sbjct: 3 CRPDEFQC-SDGNCIHGSRQCDREYDCKDMSDEVGCV 38
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 37.4 bits (87), Expect = 3e-05
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C EF C CI +++ CD D DC G DE C
Sbjct: 3 CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDEASC 37
Score = 37.4 bits (87), Expect = 3e-05
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
KC+ + ++CD + DC D SDE +C
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEASC 37
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 37.1 bits (86), Expect = 4e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCVLARK 145
+C+ + W CDG++DCGD+SDE + +
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 37.1 bits (86), Expect = 4e-05
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C +F C S CIP+ W CDGD DC DE
Sbjct: 5 CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHA 39
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 37.2 bits (86), Expect = 4e-05
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 49 CPVGEFLC----IGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
CP G+F C C PQ+W CDG DC G DE C
Sbjct: 2 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41
Score = 36.8 bits (85), Expect = 5e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C + WLCDG DC D DE C
Sbjct: 18 ECYPQDWLCDGHPDCDDGRDEWGC 41
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 36.6 bits (85), Expect = 5e-05
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
C EF C S CI W+CDG DC DE C
Sbjct: 2 CSAFEFHC-LSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 35.9 bits (83), Expect = 8e-05
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ SW CDG DC D SDE NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDEENC 36
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 36.3 bits (84), Expect = 8e-05
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 42 ASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
S +C EF C CI +W CDG +C G DE +
Sbjct: 1 GSAVGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQET 43
Score = 35.2 bits (81), Expect = 2e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
KC+ W+CDG +C D SDE
Sbjct: 19 KCISYKWVCDGSAECQDGSDESQET 43
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 35.5 bits (82), Expect = 1e-04
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 48 KCPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
+C GEF C + CI + WKCDGD DC DE +
Sbjct: 5 QCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 35.2 bits (81), Expect = 2e-04
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+++ W CDG++DC D SDE +
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAPAL 41
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 35.2 bits (81), Expect = 2e-04
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 49 CPVGEFLC-IGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C F C CI CDG DC+ DE V
Sbjct: 2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39
Score = 32.5 bits (74), Expect = 0.002
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+ +CDG DC + DE V
Sbjct: 15 ECISDLLVCDGHKDCHNAHDEDPDV 39
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 35.1 bits (81), Expect = 2e-04
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C F C S CIPQ W CD D DC G DE
Sbjct: 3 CGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQR 38
Score = 34.0 bits (78), Expect = 4e-04
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
C+ + W CD + DC D SDE
Sbjct: 14 TCIPQLWACDNDPDCEDGSDEWPQR 38
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 34.8 bits (80), Expect = 2e-04
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 49 CPVGEFLCI-GSCVCIPQEWKCDGDLDCYAGEDEVKCV 85
C E C CI CDG+ DC G DE
Sbjct: 3 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40
Score = 32.5 bits (74), Expect = 0.002
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNCV 141
+C+ CDGE DC D SDE
Sbjct: 16 ECIHDLLFCDGEKDCRDGSDEDPET 40
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 33.6 bits (77), Expect = 6e-04
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 117 KCLKKSWLCDGEDDCGDFSDEVNC 140
+C+ +C+ DC D+SDE
Sbjct: 18 ECITLDKVCNMARDCRDWSDEPIK 41
Score = 32.1 bits (73), Expect = 0.003
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 49 CPVGEFLCIGSCVCIPQEWKCDGDLDCYAGEDEVKC 84
+F C S CI + C+ DC DE
Sbjct: 7 EGPNKFKC-HSGECITLDKVCNMARDCRDWSDEPIK 41
>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
faecium, VAT(D) [TaxId: 1352]}
Length = 203
Score = 29.0 bits (64), Expect = 0.19
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 8/111 (7%)
Query: 17 YTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCPVGEFLCIGSCVCIPQEWKCDGDLDCY 76
Y+ + E D I+ YH K +G+F IG V I
Sbjct: 35 YSYYDSKNGETFDKQIL------YHYPILNDKLKIGKFCSIGPGVTIIMNGANHRMDGST 88
Query: 77 AGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFCPPLFKCLKKSWLCDG 127
+ EK P + + P + + + + + DG
Sbjct: 89 YPFNLFGNGWEKHMPKLDQL--PIKGDTIIGNDVWIGKDVVIMPGVKIGDG 137
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 24.3 bits (52), Expect = 4.1
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 71 GDLDCYAGEDEVKCVPEKECPAVRPVACPQSDSPKMCDKGFC 112
G + +E+ K V V S + KM ++GF
Sbjct: 7 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFA 48
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 321
Score = 24.0 bits (52), Expect = 9.6
Identities = 6/36 (16%), Positives = 9/36 (25%), Gaps = 4/36 (11%)
Query: 15 STYTNFSKNGNENSDFCIIFLFLDPYHASHCIGKCP 50
T +K+ E + F L C
Sbjct: 123 CTLNMINKDFEEYPEHRTNFFLL----LQAVNSHCF 154
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.483
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 640,050
Number of extensions: 31877
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 66
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)