BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy581
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/301 (49%), Positives = 192/301 (63%), Gaps = 34/301 (11%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
TL +PD+K PL+L +K +NHDTR FRF LPS EH+LGLP+GQH+ LSA I+ V R Y
Sbjct: 6 TLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHILGLPVGQHIYLSARIDGNLVIRPY 65
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TPV+SD+ G++DLV+KVYFK+ HPKFP GGKMSQ+LE+MK+G+ I GP G L Y G
Sbjct: 66 TPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGK 125
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G+F IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ+E
Sbjct: 126 GKFAIRP-DKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 184
Query: 223 KDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLM 282
KDI ++ +FKLWYTVDR + W YS GFV+ EMI +HL PP + LVLM
Sbjct: 185 KDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLM 244
Query: 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342
C GPPPMI +AC PNL+++G+ ++ F+
Sbjct: 245 C---------------------------------GPPPMIQYACLPNLERVGHPKERCFA 271
Query: 343 Y 343
+
Sbjct: 272 F 272
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/301 (49%), Positives = 190/301 (63%), Gaps = 34/301 (11%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
TL +PD+K PL+L +K ++HDTR FRF LPS +H+LGLPIGQH+ LS I+ V R Y
Sbjct: 8 TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTRIDGNLVIRPY 67
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TPV+SD+ G++DLVVKVYFK HPKFP GGKMSQ+LENM +G+ I GP G L Y G
Sbjct: 68 TPVSSDDDKGFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGK 127
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G+F IRA KK P V + MIAGGTGITPMLQ++R + KDP D+T L+FANQSE
Sbjct: 128 GKFAIRA-DKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSE 186
Query: 223 KDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLM 282
KDI ++ +FKLWYTVD+ D W YS GFV+ EMI +HL PP + L+LM
Sbjct: 187 KDILLRPELEELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPGEETLILM 246
Query: 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342
C GPPPMI FAC PNL+++G+ ++ F+
Sbjct: 247 C---------------------------------GPPPMIQFACLPNLERVGHPKERCFT 273
Query: 343 Y 343
+
Sbjct: 274 F 274
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/301 (49%), Positives = 189/301 (62%), Gaps = 34/301 (11%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
TL +PD+K PL+L +K ++HDTR FRF LPS +H+LGLPIGQH+ LS I+ V R Y
Sbjct: 8 TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHILGLPIGQHIYLSTRIDGNLVIRPY 67
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TPV+SD+ G++DLVVKVYFK HPKFP GGKM Q+LENM +G+ I GP G L Y G
Sbjct: 68 TPVSSDDDKGFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVYQGK 127
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G+F IRA KK P V + MIAGGTGITPMLQ++R + KDP D+T L+FANQSE
Sbjct: 128 GKFAIRA-DKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQSE 186
Query: 223 KDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLM 282
KDI ++ +FKLWYTVD+ D W YS GFV+ EMI +HL PP + L+LM
Sbjct: 187 KDILLRPELEELRNEHSSRFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPPPGEETLILM 246
Query: 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342
C GPPPMI FAC PNL+++G+ ++ F+
Sbjct: 247 C---------------------------------GPPPMIQFACLPNLERVGHPKERCFT 273
Query: 343 Y 343
+
Sbjct: 274 F 274
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 146/301 (48%), Positives = 187/301 (62%), Gaps = 34/301 (11%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
TL PD+K PL+L ++ I+HDTR FRF LPS +H+LGLP+GQH+ LSA I+ V R Y
Sbjct: 9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPY 68
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TP++SD+ G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G L Y G
Sbjct: 69 TPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGK 128
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G+F IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ+E
Sbjct: 129 GKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 187
Query: 223 KDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLM 282
KDI K+ +FKLWYT+DR + W Y GFV+ EMI +HL PP + LVLM
Sbjct: 188 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 247
Query: 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342
C GPPPMI +AC PNLD +G+ + F
Sbjct: 248 C---------------------------------GPPPMIQYACLPNLDHVGHPTERCFV 274
Query: 343 Y 343
+
Sbjct: 275 F 275
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 168/297 (56%), Gaps = 44/297 (14%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
L +P ++ +L K E++ D R FRF LPS + VLGLPIG+H+ + ATI + RAY
Sbjct: 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAY 64
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TP + + G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G
Sbjct: 65 TPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGR 124
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQS 221
G F I + +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN++
Sbjct: 125 GSFVINGKQR-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRT 177
Query: 222 EKDIXXXXXXXXXXXKNPDQFKLWYTVD---RPEDGWKYSTGFVSAEMIAEHLFPPSPDN 278
E DI + PD+ K+WY +D RPE+GWKYS GFV+ ++ EH+ D
Sbjct: 178 EDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDT 237
Query: 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGY 335
L L C GPPPMI FA PNL+K+ Y
Sbjct: 238 LALAC---------------------------------GPPPMIQFAISPNLEKMKY 261
>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 224 bits (570), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 167/297 (56%), Gaps = 44/297 (14%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
L +P ++ +L K E++ D R FRF LPS + VLGLPIG+H+ + ATI + RAY
Sbjct: 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAY 64
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
TP + + G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G
Sbjct: 65 TPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGR 124
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQS 221
G F I + +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN++
Sbjct: 125 GSFVINGKQR-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRT 177
Query: 222 EKDIXXXXXXXXXXXKNPDQFKLWYTVD---RPEDGWKYSTGFVSAEMIAEHLFPPSPDN 278
E DI + PD+ K+WY +D RPE+GWKYS GFV+ ++ EH+ D
Sbjct: 178 EDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDT 237
Query: 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGY 335
L L GPPPMI FA PNL+K+ Y
Sbjct: 238 LALA---------------------------------SGPPPMIQFAISPNLEKMKY 261
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 145/242 (59%), Gaps = 27/242 (11%)
Query: 45 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTP 104
++P+ L+EK INH+TR FRF L E V+GLPIGQH+S+ AT++ + + R YTP
Sbjct: 6 LNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTP 65
Query: 105 VTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGE 164
V+SD+ GY DL++KVY K G+MSQ+++++ G+ + V GP+G+ Y N
Sbjct: 66 VSSDDEKGYFDLIIKVYEK---------GQMSQYIDHLNPGDFLQVRGPKGQFDYKPN-- 114
Query: 165 FHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKD 224
V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN +E D
Sbjct: 115 ---------------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDD 159
Query: 225 IXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCG 284
I K + FK++Y ++ P GW GFVSA+MI +H PPS D V+MCG
Sbjct: 160 ILLRTELDDMAKKYSN-FKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVMMCG 218
Query: 285 PP 286
PP
Sbjct: 219 PP 220
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 33/204 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDR----PEDGWKYSTGFV 262
L+F + +I K PD F+L Y + R P+ G Y V
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRV 241
Query: 263 SAEMIAEHLFPPSPDNLVLMCGPP 286
+ + +CGPP
Sbjct: 242 AEHADQLWQLIKNQKTHTYICGPP 265
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 33/203 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDR----PEDGWKYSTGFV 262
L+F + +I K PD F+L Y + R P+ G Y V
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRV 241
Query: 263 SAEMIAEHLFPPSPDNLVLMCGP 285
+ + +CGP
Sbjct: 242 AEHADQLWQLIKNQKTHTYICGP 264
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 33/203 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDR----PEDGWKYSTGFV 262
L+F + +I K PD F+L Y + R P+ G Y V
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRV 241
Query: 263 SAEMIAEHLFPPSPDNLVLMCGP 285
+ + +CGP
Sbjct: 242 AEHADELWQLIKNQKTHTYICGP 264
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 133 GKMSQFLENMKVG-EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 191
G S +L N+ VG + + ++GP G+ L P + T + M+A GT
Sbjct: 217 GVCSTYLCNLPVGTDDVKITGPVGKEMLL---------------PDDEDAT-VVMLATGT 260
Query: 192 GITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYT 247
GI P + + K+ ++ K LIF +I +NPD F+L Y
Sbjct: 261 GIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYA 320
Query: 248 VDRPE---DGWK-YSTGFVSAEMIAEHLFP--PSPDNLVLMCG 284
+ R + DG K Y VS A+ LF P+ V MCG
Sbjct: 321 ISREQKTADGGKVYVQSRVSE--YADELFEMIQKPNTHVYMCG 361
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+AGGTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLAGGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 83/204 (40%), Gaps = 32/204 (15%)
Query: 84 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-M 142
GQ + L+ D V+R+Y+P G ++ +++V P+G + S +L N
Sbjct: 47 GQFMDLTIPGTD--VSRSYSPANLPNPEGRLEFLIRV--------LPEG-RFSDYLRNDA 95
Query: 143 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 202
+VG+ ++V GP G G + +AGGTG+ P++ +VR
Sbjct: 96 RVGQVLSVKGPLGVFGLKERG-----------------MAPRYFVAGGTGLAPVVSMVRQ 138
Query: 203 ITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFV 262
+ ++ T + + F +E ++ ++ + V P W+ G
Sbjct: 139 M-QEWTAPNETRIYFGVNTEPEL-FYIDELKSLERSMRNLTVKACVWHPSGDWEGEQG-S 195
Query: 263 SAEMIAEHLFPPSPDNLVLMCGPP 286
+ + E L + + +CGPP
Sbjct: 196 PIDALREDLESSDANPDIYLCGPP 219
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 133 GKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 191
GKMS++L K G+ ++ +GP G F++R V + + M+AGGT
Sbjct: 179 GKMSEYLSVQAKAGDKMSFTGPFG--------SFYLRDVKRP----------VLMLAGGT 220
Query: 192 GITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWY---TV 248
GI P L +++ + + +++ + L+F + D+ K P W+ TV
Sbjct: 221 GIAPFLSMLQVLEQKGSEH-PVRLVFGVTQDCDLVALEQLDALQQKLP-----WFEYRTV 274
Query: 249 DRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP--RKTVKNNLKPEDKKEMKTLF 306
+ G+V+ + + L D V +CGP + V++ L + + LF
Sbjct: 275 VAHAESQHERKGYVTGHIEYDWLNGGEVD--VYLCGPVPMVEAVRSWLDTQGIQPANFLF 332
Query: 307 SEFN 310
+F+
Sbjct: 333 EKFS 336
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 74/203 (36%), Gaps = 33/203 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDR----PEDGWKYSTGFV 262
L+F + +I K PD F+L Y + R P+ G Y V
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRV 240
Query: 263 SAEMIAEHLFPPSPDNLVLMCGP 285
+ + +CGP
Sbjct: 241 AEHADQLWQLIKNQKTHTYICGP 263
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 28/154 (18%)
Query: 133 GKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 191
G +S +L N +KVG+ + + P G Y V ++ P + +I+ G
Sbjct: 83 GLVSHYLHNNVKVGDSVKLYAPAGDFFY----------VERERP--------VVLISAGV 124
Query: 192 GITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRP 251
G TPM ++ + K + + ++ ++A S K+ + ++WY +
Sbjct: 125 GATPMQAILHTLAKQ--NKSGVTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESA 182
Query: 252 EDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285
+D + EM L P D +CGP
Sbjct: 183 DD-------VLQGEMQLAELILPIEDGDFYLCGP 209
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKKMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPL 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 181
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 182 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 240
Query: 267 IAEH 270
+AEH
Sbjct: 241 VAEH 244
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 180
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 181 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 239
Query: 267 IAEH 270
+AEH
Sbjct: 240 VAEH 243
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 100 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 154
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 155 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK-- 212
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKDAERAANPE 172
Query: 213 ------MSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266
L+F + +I K PD F+L Y + R + + ++ +
Sbjct: 173 YQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQ-DR 231
Query: 267 IAEH 270
+AEH
Sbjct: 232 VAEH 235
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 133 GKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 191
G +S L +++ VG+ + ++ P G FHI +K T + +I+GG
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAK---------TPIVLISGGV 276
Query: 192 GITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRP 251
G+TPM+ +++ + P N + + +N D F ++Y P
Sbjct: 277 GLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLF-VFYDQPLP 335
Query: 252 ED--GWKYST-GFVSAEMIAEHLFPPSPDNLVLMCGP 285
ED G Y G V + I + + P D + CGP
Sbjct: 336 EDVQGRDYDYPGLVDVKQIEKSILLPDADYYI--CGP 370
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 133 GKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 191
G +S L +++ VG+ + ++ P G FHI +K T + +I+GG
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAK---------TPIVLISGGV 276
Query: 192 GITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVDRP 251
G+TPM+ +++ + P N + + +N D F ++Y P
Sbjct: 277 GLTPMVSMLKVALQAPPRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLF-VFYDQPLP 335
Query: 252 ED--GWKYST-GFVSAEMIAEHLFPPSPDNLVLMCGP 285
ED G Y G V + I + + P D + CGP
Sbjct: 336 EDVQGRDYDYPGLVDVKQIEKSILLPDADYYI--CGP 370
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHG 112
LK+ K +I D F P + G +L+++ R Y+ +
Sbjct: 11 LKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSR---RTYSLCNDSQERN 67
Query: 113 YMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 172
+ VK ++ + + GG +S F+++ G+ + VS PR EF
Sbjct: 68 RYVIAVK---RDSNGR---GGSIS-FIDDTSEGDAVEVSLPRN--------EF------- 105
Query: 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203
P + + ++AGG GITPML + R +
Sbjct: 106 ---PLDKRAKSFILVAGGIGITPMLSMARQL 133
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 70 FELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129
F L VL GQ L I+ E V RAY+ V S ++ +V V + N +
Sbjct: 30 FSLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVVYTNDAGEV 89
Query: 130 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 189
G K+S L +K G+ + V G F + V + L M+A
Sbjct: 90 VKG-KLSPRLAALKPGDEVQVVSE-------AAGFFVLDEVPHCET--------LWMLAT 133
Query: 190 GTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVD 249
GT I P L ++R + KD + L+ A + D+ + + ++ V
Sbjct: 134 GTAIGPYLSILR-LGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVS 192
Query: 250 RPEDGWKYSTGFV-----SAEMIAEHLFPPSPDNL-VLMCGPPR 287
R E TG + S E+ + P + + V++CG P+
Sbjct: 193 R-ETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQ 235
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 127 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 186
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 187 IAGGTGITPMLQLVR 201
IA GTGI+P + ++
Sbjct: 176 IATGTGISPYISFLK 190
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 127 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 186
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 187 IAGGTGITPMLQLVR 201
IA GTGI+P + ++
Sbjct: 176 IATGTGISPYISFLK 190
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 127 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 186
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 187 IAGGTGITPMLQLVR 201
IA GTGI+P + ++
Sbjct: 176 IATGTGISPYISFLK 190
>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
Escherichia Coli
Length = 232
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 186 MIAGGTGITPMLQ-LVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKL 244
+IAGGTG + L+ + ++P N +++ + + E+ + K+P ++
Sbjct: 107 LIAGGTGFSYARSILLTALARNP--NRDITIYWGGREEQHLYDLCELEALSLKHPG-LQV 163
Query: 245 WYTVDRPEDGWKYSTGFVSAEMIAEH 270
V++PE GW+ TG V ++ +H
Sbjct: 164 VPVVEQPEAGWRGRTGTVLTAVLQDH 189
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 132 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 176
Query: 193 ITPMLQLVRHITKDPTDNTK---MSLIFANQSEKD 224
+ P +R + + N + ++ +F + D
Sbjct: 177 VAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD 211
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 127 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 171
Query: 193 ITPMLQLVRHITKDPTDNTK---MSLIFANQSEKD 224
+ P +R + + N + ++ +F + D
Sbjct: 172 VAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD 206
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 127 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 171
Query: 193 ITPMLQLVRHITKDPTDNTK---MSLIFANQSEKD 224
+ P +R + + N + ++ +F + D
Sbjct: 172 VAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSD 206
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 33/239 (13%)
Query: 70 FELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129
F L VL GQ L I+ E V RAY+ V S ++ ++ Y V
Sbjct: 20 FSLTVHAPVLPFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPD-----LEFYLVTV---- 70
Query: 130 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 189
PDG K+S L +K G+ + V G F + V + L M+A
Sbjct: 71 PDG-KLSPRLAALKPGDEVQVVSE-------AAGFFVLDEVPHCE--------TLWMLAT 114
Query: 190 GTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTVD 249
GT I P L ++R + KD + L+ A + D+ + + ++ V
Sbjct: 115 GTAIGPYLSILR-LGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVS 173
Query: 250 RPEDGWKYSTGFV-----SAEMIAEHLFPPSPD-NLVLMCGPPRKTVKNNLKPEDKKEM 302
R E TG + S E+ + P + + + V++CG P+ ++ ++M
Sbjct: 174 R-ETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQM 231
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 80 GLPI--GQHLSLSA----TINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 133
LPI GQ+++++ N R Y+ ++ +G L V + FP G
Sbjct: 181 SLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNG---LRFAVKMEAARENFP-AG 236
Query: 134 KMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
+S++L ++ KVG+ I +S P G A N E + + + P L +++ G G
Sbjct: 237 LVSEYLHKDAKVGDEIKLSAPAGDFAI--NKEL----IHQNEVP-------LVLLSSGVG 283
Query: 193 ITPMLQLVRHITK 205
+TP+L ++ K
Sbjct: 284 VTPLLAMLEEQVK 296
>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FNC|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
pdb|1FND|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase
At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'-
Phospho-5'-Amp Bound States
Length = 314
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 24/160 (15%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL ++K G + ++GP G+ + KDP + M+ GTG
Sbjct: 130 GVCSNFLCDLKPGAEVKLTGPVGK-----------EMLMPKDPNATI-----IMLGTGTG 173
Query: 193 ITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTV 248
I P + + + D+ K + L + + K PD F+L + V
Sbjct: 174 IAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAV 233
Query: 249 DRPEDGWKYSTGFVSAEMI--AEHLFP--PSPDNLVLMCG 284
R + K ++ M A L+ + V MCG
Sbjct: 234 SREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG 273
>pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
pdb|3JYU|B Chain B, Crystal Structure Of The N-Terminal Domains Of The
Ubiquitin Specific Peptidase 4 (Usp4)
Length = 231
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 245 WYTVD-RPEDGWKYSTGFVSAEM--IAEH-LFPPSPDNLVLMCGPPRKTVKNNLKPE 297
WY +D R WK GF S + + EH LFP DN L P +T+K +L E
Sbjct: 36 WYLIDSRWFKQWKKYVGFDSWDXYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDE 92
>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of
Ferredoxin-Nadp+ Reductase: Structure-Function
Relationship As Studied By Site-Directed Mutagenesis And
X- Ray Crystallography
Length = 314
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL ++K G + ++GP G+ + KDP + M+ GTG
Sbjct: 130 GVCSNFLCDLKPGAEVKLTGPVGK-----------EMLMPKDPNATI-----IMLGTGTG 173
Query: 193 ITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTV 248
I P + + + D+ K + L + + K PD F+L + V
Sbjct: 174 IAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAV 233
Query: 249 DRPEDGWKYSTGFVSAEM 266
R + K ++ M
Sbjct: 234 SREQTNEKGEKMYIQTRM 251
>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312l
Length = 314
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL ++K G + ++GP G+ + KDP + M+ GTG
Sbjct: 130 GVCSNFLCDLKPGAEVKLTGPVGK-----------EMLMPKDPNATI-----IMLGTGTG 173
Query: 193 ITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTV 248
I P + + + D+ K + L + + K PD F+L + V
Sbjct: 174 IAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAV 233
Query: 249 DRPEDGWKYSTGFVSAEM 266
R + K ++ M
Sbjct: 234 SREQTNEKGEKMYIQTRM 251
>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312a
Length = 314
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL ++K G + ++GP G+ + KDP + M+ GTG
Sbjct: 130 GVCSNFLCDLKPGAEVKLTGPVGK-----------EMLMPKDPNATI-----IMLGTGTG 173
Query: 193 ITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTV 248
I P + + + D+ K + L + + K PD F+L + V
Sbjct: 174 IAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAV 233
Query: 249 DRPEDGWKYSTGFVSAEM 266
R + K ++ M
Sbjct: 234 SREQTNEKGEKMYIQTRM 251
>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase)
Mutant E312q
Length = 314
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
G S FL ++K G + ++GP G+ + KDP + M+ GTG
Sbjct: 130 GVCSNFLCDLKPGAEVKLTGPVGK-----------EMLMPKDPNATI-----IMLGTGTG 173
Query: 193 ITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDIXXXXXXXXXXXKNPDQFKLWYTV 248
I P + + + D+ K + L + + K PD F+L + V
Sbjct: 174 IAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAV 233
Query: 249 DRPEDGWKYSTGFVSAEM 266
R + K ++ M
Sbjct: 234 SREQTNEKGEKMYIQTRM 251
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 141 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
N+ VG G + G + HI +S + PT +MI GGTG
Sbjct: 111 NLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTG 162
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 141 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192
N+ VG G + G + HI +S + PT +MI GGTG
Sbjct: 111 NLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTG 162
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 99 ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA 158
R T V +DE + + + + + ++ F++N+K GEP VSG G++A
Sbjct: 255 VRETTVVLTDEQGDRGSRYLYFFLERYRDSYLE--ELKTFIKNVKSGEPPAVSGEDGKMA 312
Query: 159 YL 160
L
Sbjct: 313 LL 314
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,866,134
Number of Sequences: 62578
Number of extensions: 408738
Number of successful extensions: 913
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 65
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)