Query psy581
Match_columns 343
No_of_seqs 159 out of 1833
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:34:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534|consensus 100.0 1.6E-45 3.4E-50 337.0 27.0 246 39-343 40-286 (286)
2 PTZ00319 NADH-cytochrome B5 re 100.0 5.9E-41 1.3E-45 315.1 29.1 268 39-343 22-300 (300)
3 PLN02252 nitrate reductase [NA 100.0 7.2E-41 1.6E-45 350.3 30.3 263 41-343 625-888 (888)
4 cd06183 cyt_b5_reduct_like Cyt 100.0 1.9E-37 4.2E-42 280.8 25.0 233 53-343 1-234 (234)
5 PTZ00274 cytochrome b5 reducta 100.0 1.2E-36 2.5E-41 287.8 27.7 251 47-343 49-325 (325)
6 cd06188 NADH_quinone_reductase 100.0 2.8E-37 6E-42 288.3 22.0 241 47-342 6-280 (283)
7 PRK11872 antC anthranilate dio 100.0 1.2E-36 2.5E-41 291.0 26.1 230 46-342 102-332 (340)
8 cd06217 FNR_iron_sulfur_bindin 100.0 2.5E-36 5.5E-41 273.9 26.3 229 50-342 1-232 (235)
9 cd06215 FNR_iron_sulfur_bindin 100.0 2.4E-36 5.1E-41 273.4 25.6 226 53-342 1-228 (231)
10 cd06211 phenol_2-monooxygenase 100.0 3.1E-36 6.6E-41 274.3 24.7 230 47-342 3-235 (238)
11 cd06210 MMO_FAD_NAD_binding Me 100.0 3E-36 6.6E-41 273.8 24.4 227 51-342 2-232 (236)
12 cd06184 flavohem_like_fad_nad_ 100.0 9.4E-36 2E-40 272.4 26.6 230 48-342 4-240 (247)
13 cd06209 BenDO_FAD_NAD Benzoate 100.0 9.1E-36 2E-40 269.4 24.9 222 51-342 2-224 (228)
14 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 9.6E-36 2.1E-40 286.1 26.4 233 50-342 1-238 (352)
15 cd06189 flavin_oxioreductase N 100.0 6E-36 1.3E-40 269.9 23.0 220 53-342 1-221 (224)
16 cd06216 FNR_iron_sulfur_bindin 100.0 2.7E-35 5.9E-40 268.8 27.4 224 48-342 15-240 (243)
17 PRK10684 HCP oxidoreductase, N 100.0 1.3E-35 2.8E-40 283.1 25.5 229 46-342 5-234 (332)
18 cd06191 FNR_iron_sulfur_bindin 100.0 3.4E-35 7.5E-40 266.1 25.2 224 54-342 2-228 (231)
19 cd06213 oxygenase_e_transfer_s 100.0 2.9E-35 6.3E-40 265.9 23.9 220 52-342 2-224 (227)
20 COG1018 Hmp Flavodoxin reducta 100.0 5.4E-35 1.2E-39 268.8 25.9 224 48-342 3-227 (266)
21 cd06214 PA_degradation_oxidore 100.0 4.7E-35 1E-39 266.6 25.0 232 50-342 1-237 (241)
22 cd06195 FNR1 Ferredoxin-NADP+ 100.0 3E-35 6.6E-40 268.2 23.7 224 54-342 1-238 (241)
23 PRK13289 bifunctional nitric o 100.0 4.7E-35 1E-39 285.8 25.7 230 48-342 152-389 (399)
24 PRK07609 CDP-6-deoxy-delta-3,4 100.0 4.8E-35 1E-39 279.9 24.6 228 47-342 99-329 (339)
25 cd06212 monooxygenase_like The 100.0 7.5E-35 1.6E-39 264.0 24.6 224 52-342 2-228 (232)
26 PRK08051 fre FMN reductase; Va 100.0 5.8E-35 1.3E-39 265.0 23.6 223 50-342 2-226 (232)
27 cd00322 FNR_like Ferredoxin re 100.0 5.3E-35 1.2E-39 262.5 23.1 220 57-342 2-222 (223)
28 PRK08345 cytochrome-c3 hydroge 100.0 1.2E-34 2.5E-39 271.3 24.3 229 46-342 1-243 (289)
29 cd06196 FNR_like_1 Ferredoxin 100.0 1.6E-34 3.5E-39 259.4 22.9 214 52-342 2-217 (218)
30 cd06187 O2ase_reductase_like T 100.0 1.6E-34 3.4E-39 260.3 22.9 220 55-342 1-221 (224)
31 PRK10926 ferredoxin-NADP reduc 100.0 6.9E-34 1.5E-38 260.5 26.7 225 49-338 3-234 (248)
32 PRK05464 Na(+)-translocating N 100.0 2.4E-34 5.3E-39 281.4 25.2 242 47-342 130-404 (409)
33 PTZ00306 NADH-dependent fumara 100.0 3.2E-34 7E-39 310.9 27.9 251 39-342 903-1160(1167)
34 cd06190 T4MO_e_transfer_like T 100.0 3.2E-34 6.8E-39 259.9 22.8 221 55-342 1-228 (232)
35 cd06194 FNR_N-term_Iron_sulfur 100.0 7.8E-34 1.7E-38 255.6 22.4 217 55-342 1-218 (222)
36 TIGR01941 nqrF NADH:ubiquinone 100.0 5.7E-34 1.2E-38 278.4 22.5 242 47-342 126-400 (405)
37 cd06221 sulfite_reductase_like 100.0 1.2E-33 2.6E-38 259.6 22.3 220 55-342 1-221 (253)
38 PLN03116 ferredoxin--NADP+ red 100.0 8.1E-33 1.8E-37 260.9 24.7 237 30-285 4-267 (307)
39 PRK05713 hypothetical protein; 100.0 4.8E-33 1E-37 263.2 22.8 215 50-342 91-305 (312)
40 PRK08221 anaerobic sulfite red 100.0 7.7E-33 1.7E-37 255.6 22.3 217 50-342 7-223 (263)
41 cd06198 FNR_like_3 NAD(P) bind 100.0 1.6E-32 3.6E-37 246.1 21.1 206 61-342 5-212 (216)
42 cd06208 CYPOR_like_FNR These f 100.0 4.4E-32 9.6E-37 253.6 22.8 232 45-332 3-260 (286)
43 TIGR02911 sulfite_red_B sulfit 100.0 5E-32 1.1E-36 249.9 22.4 217 50-342 5-221 (261)
44 PLN03115 ferredoxin--NADP(+) r 100.0 8.5E-32 1.8E-36 257.7 23.2 224 42-285 82-327 (367)
45 cd06185 PDR_like Phthalate dio 100.0 2.7E-31 5.8E-36 237.2 20.0 205 56-342 1-207 (211)
46 COG0543 UbiB 2-polyprenylpheno 100.0 9.2E-31 2E-35 240.1 22.4 211 52-338 9-219 (252)
47 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.5E-30 3.2E-35 238.2 20.1 206 55-338 1-207 (246)
48 cd06219 DHOD_e_trans_like1 FAD 100.0 3.7E-30 8E-35 235.8 20.5 205 53-337 1-206 (248)
49 cd06201 SiR_like2 Cytochrome p 100.0 5.5E-30 1.2E-34 239.6 21.2 196 47-285 42-253 (289)
50 PRK06222 ferredoxin-NADP(+) re 100.0 5.6E-30 1.2E-34 238.7 20.3 204 53-336 2-206 (281)
51 cd06192 DHOD_e_trans_like FAD/ 100.0 1.2E-29 2.6E-34 231.7 21.1 207 55-341 1-207 (243)
52 PRK05802 hypothetical protein; 100.0 2.2E-29 4.8E-34 238.2 23.2 216 46-332 60-275 (320)
53 PRK00054 dihydroorotate dehydr 100.0 1.8E-29 3.8E-34 231.6 21.2 203 49-335 3-205 (250)
54 TIGR03224 benzo_boxA benzoyl-C 100.0 2E-29 4.2E-34 246.2 21.4 222 36-285 128-371 (411)
55 COG4097 Predicted ferric reduc 100.0 1.9E-29 4E-34 233.1 18.0 216 49-341 214-431 (438)
56 cd06200 SiR_like1 Cytochrome p 100.0 5.1E-29 1.1E-33 227.9 19.1 188 64-285 17-210 (245)
57 cd06220 DHOD_e_trans_like2 FAD 100.0 1E-28 2.2E-33 224.3 20.8 196 54-342 2-197 (233)
58 cd06193 siderophore_interactin 100.0 2.7E-29 5.9E-34 228.3 16.6 209 55-342 1-230 (235)
59 COG2871 NqrF Na+-transporting 100.0 2.9E-29 6.2E-34 224.2 15.0 238 49-341 133-404 (410)
60 cd06197 FNR_like_2 FAD/NAD(P) 100.0 1E-28 2.2E-33 222.4 17.6 154 57-235 2-179 (220)
61 cd06182 CYPOR_like NADPH cytoc 100.0 2E-28 4.3E-33 226.6 18.8 211 63-333 15-237 (267)
62 PRK12778 putative bifunctional 99.9 2.9E-26 6.2E-31 240.3 21.4 204 53-336 2-206 (752)
63 PRK12779 putative bifunctional 99.9 1.7E-25 3.6E-30 237.4 24.3 218 49-337 647-873 (944)
64 cd06186 NOX_Duox_like_FAD_NADP 99.9 9.1E-25 2E-29 194.8 18.9 147 57-233 3-162 (210)
65 PRK12775 putative trifunctiona 99.9 3.4E-24 7.3E-29 229.2 22.0 202 53-335 2-205 (1006)
66 PLN02292 ferric-chelate reduct 99.9 2.7E-23 5.9E-28 212.3 23.9 200 51-285 325-545 (702)
67 cd06207 CyPoR_like NADPH cytoc 99.9 7E-24 1.5E-28 205.9 15.9 186 96-335 161-354 (382)
68 cd06199 SiR Cytochrome p450- l 99.9 1.6E-23 3.6E-28 201.7 12.8 181 79-285 130-315 (360)
69 TIGR01931 cysJ sulfite reducta 99.9 2.8E-22 6.2E-27 204.3 21.9 166 98-285 382-553 (597)
70 cd06206 bifunctional_CYPOR The 99.9 1.4E-22 3.1E-27 196.9 14.0 198 80-337 146-354 (384)
71 cd06204 CYPOR NADPH cytochrome 99.9 8.5E-22 1.8E-26 193.1 16.1 169 96-285 175-371 (416)
72 cd06203 methionine_synthase_re 99.9 4.4E-22 9.5E-27 194.2 13.3 165 96-285 171-353 (398)
73 cd06202 Nitric_oxide_synthase 99.9 3.8E-21 8.3E-26 187.9 16.3 166 97-285 175-358 (406)
74 PRK10953 cysJ sulfite reductas 99.9 2.7E-21 5.9E-26 196.5 14.6 181 79-285 370-555 (600)
75 PLN02631 ferric-chelate reduct 99.9 2.9E-20 6.4E-25 189.8 20.1 168 52-252 309-491 (699)
76 PLN02844 oxidoreductase/ferric 99.9 7.2E-20 1.6E-24 187.8 22.9 194 55-285 316-534 (722)
77 PRK06214 sulfite reductase; Pr 99.8 2.8E-20 6E-25 185.7 17.5 166 98-285 315-485 (530)
78 KOG3378|consensus 99.8 1.1E-20 2.3E-25 168.3 8.2 222 48-342 147-377 (385)
79 PF00970 FAD_binding_6: Oxidor 99.8 1.8E-19 4E-24 141.6 13.3 98 52-158 1-98 (99)
80 COG0369 CysJ Sulfite reductase 99.8 7.6E-19 1.7E-23 176.6 16.4 167 97-285 371-543 (587)
81 PF00175 NAD_binding_1: Oxidor 99.8 1.9E-18 4.2E-23 137.8 7.8 98 186-285 1-100 (109)
82 KOG1158|consensus 99.7 2.5E-16 5.3E-21 158.6 14.1 171 96-285 419-600 (645)
83 KOG0039|consensus 99.7 9E-16 1.9E-20 157.5 17.0 167 51-249 355-551 (646)
84 KOG1159|consensus 99.6 1.9E-14 4.2E-19 137.7 11.4 161 98-285 367-530 (574)
85 COG2375 ViuB Siderophore-inter 99.5 1.3E-12 2.9E-17 118.5 18.9 214 48-342 15-253 (265)
86 PRK06567 putative bifunctional 99.5 5.8E-13 1.2E-17 139.6 15.2 132 49-217 789-923 (1028)
87 PF08030 NAD_binding_6: Ferric 99.3 3E-12 6.6E-17 108.6 6.0 71 181-251 1-77 (156)
88 PF08021 FAD_binding_9: Sidero 99.0 1.4E-09 3E-14 88.1 8.1 93 54-155 1-115 (117)
89 PF08022 FAD_binding_8: FAD-bi 99.0 8E-11 1.7E-15 93.6 -0.6 89 53-155 4-102 (105)
90 PF04954 SIP: Siderophore-inte 96.1 0.023 4.9E-07 46.0 6.9 110 182-342 2-112 (119)
91 PF00667 FAD_binding_1: FAD bi 80.5 1.3 2.9E-05 39.5 2.7 44 46-91 4-52 (219)
92 PRK02290 3-dehydroquinate synt 68.4 42 0.00091 32.2 9.3 88 47-156 164-263 (344)
93 PF01959 DHQS: 3-dehydroquinat 67.3 41 0.0009 32.4 9.1 88 47-156 174-273 (354)
94 PF00667 FAD_binding_1: FAD bi 58.8 23 0.0005 31.5 5.6 22 133-154 57-80 (219)
95 PF02662 FlpD: Methyl-viologen 57.9 26 0.00056 28.4 5.2 80 232-342 19-98 (124)
96 COG1465 Predicted alternative 57.6 45 0.00098 31.2 7.2 90 50-155 199-294 (376)
97 KOG1611|consensus 56.5 38 0.00082 30.7 6.3 54 185-246 6-60 (249)
98 PRK00036 primosomal replicatio 51.5 22 0.00049 28.1 3.7 35 112-155 43-77 (107)
99 PF10694 DUF2500: Protein of u 48.0 25 0.00055 27.8 3.6 24 39-62 25-48 (110)
100 PF01102 Glycophorin_A: Glycop 46.9 12 0.00025 30.4 1.5 19 2-20 63-81 (122)
101 PRK12446 undecaprenyldiphospho 45.5 33 0.00072 32.9 4.7 25 182-206 2-28 (352)
102 PF05545 FixQ: Cbb3-type cytoc 44.0 22 0.00048 23.6 2.3 24 8-31 12-35 (49)
103 PRK09783 copper/silver efflux 38.7 2.5E+02 0.0054 27.6 9.7 45 47-93 274-321 (409)
104 PRK00226 greA transcription el 37.3 66 0.0014 27.0 4.8 63 80-156 85-147 (157)
105 PF01272 GreA_GreB: Transcript 36.2 51 0.0011 24.0 3.4 59 81-156 6-67 (77)
106 PRK06214 sulfite reductase; Pr 32.8 76 0.0017 32.5 5.2 49 45-95 163-216 (530)
107 PF04478 Mid2: Mid2 like cell 29.0 21 0.00046 30.0 0.4 9 6-14 55-63 (154)
108 PRK05753 nucleoside diphosphat 28.9 1.2E+02 0.0025 25.0 4.8 58 82-156 56-116 (137)
109 KOG1159|consensus 28.5 39 0.00084 34.0 2.1 64 42-107 188-256 (574)
110 PF00677 Lum_binding: Lumazine 28.4 2.5E+02 0.0054 20.9 6.5 78 51-151 6-83 (85)
111 PF11325 DUF3127: Domain of un 27.9 1.5E+02 0.0033 22.3 4.8 41 63-103 35-76 (84)
112 PRK01885 greB transcription el 26.3 1.9E+02 0.0042 24.4 5.8 58 81-156 86-146 (157)
113 cd06430 GT8_like_2 GT8_like_2 26.2 4.2E+02 0.009 25.1 8.5 58 183-242 2-59 (304)
114 COG0782 Uncharacterized conser 25.7 1.7E+02 0.0037 24.5 5.3 62 80-155 78-139 (151)
115 TIGR01462 greA transcription e 25.6 1.5E+02 0.0033 24.6 5.0 62 81-156 81-142 (151)
116 PF12669 P12: Virus attachment 25.5 53 0.0011 22.9 1.8 18 9-26 4-21 (58)
117 TIGR00999 8a0102 Membrane Fusi 25.0 4E+02 0.0086 23.8 8.1 45 48-94 152-199 (265)
118 COG4736 CcoQ Cbb3-type cytochr 24.8 70 0.0015 22.5 2.3 21 8-28 12-32 (60)
119 PRK05089 cytochrome C oxidase 23.7 4.4E+02 0.0095 23.1 7.5 78 61-150 60-148 (188)
120 PRK10953 cysJ sulfite reductas 22.7 2.3E+02 0.005 29.5 6.6 49 46-96 233-286 (600)
121 cd06204 CYPOR NADPH cytochrome 22.7 2.5E+02 0.0053 27.7 6.6 45 50-96 5-53 (416)
122 KOG1478|consensus 22.6 5.4E+02 0.012 24.1 8.1 61 182-248 3-67 (341)
123 PRK14535 cysS cysteinyl-tRNA s 22.5 71 0.0015 33.7 2.8 55 214-285 202-256 (699)
124 PRK05892 nucleoside diphosphat 21.8 2.2E+02 0.0047 24.1 5.2 62 81-156 83-146 (158)
125 cd04482 RPA2_OBF_like RPA2_OBF 21.0 2.5E+02 0.0054 21.2 5.0 24 132-155 38-61 (91)
126 COG0215 CysS Cysteinyl-tRNA sy 20.4 93 0.002 31.2 3.0 11 275-285 20-30 (464)
127 PF08877 MepB: MepB protein; 20.1 4.5E+02 0.0097 21.4 6.4 51 60-119 13-63 (123)
128 TIGR03500 FliO_TIGR flagellar 20.1 3E+02 0.0066 19.3 5.0 24 51-74 29-52 (69)
No 1
>KOG0534|consensus
Probab=100.00 E-value=1.6e-45 Score=336.97 Aligned_cols=246 Identities=57% Similarity=0.987 Sum_probs=229.7
Q ss_pred cccccccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEE
Q psy581 39 KELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 118 (343)
Q Consensus 39 ~~~~~~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~V 118 (343)
...+...+|..++++++++++.+++++..++|.++...+.+.+..|||+.+.++.++....|+|||.+.+.+.|+++|.|
T Consensus 40 ~~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~V 119 (286)
T KOG0534|consen 40 TGKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVV 119 (286)
T ss_pred cCcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEE
Confidence 45577889989999999999999999999999999888889999999999999999999999999999998889999999
Q ss_pred EEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHH
Q psy581 119 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQ 198 (343)
Q Consensus 119 k~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~s 198 (343)
|.| .+|.||+||+++++||+|+++||.|++ .+++ ...+++.|||||||||||+|
T Consensus 120 K~Y---------~~G~mS~~l~~LkiGd~ve~rGP~G~~--------~~~~---------~~~~~l~miAgGtGItPmlq 173 (286)
T KOG0534|consen 120 KVY---------PKGKMSQHLDSLKIGDTVEFRGPIGEF--------KYDP---------QKAKHLGMIAGGTGITPMLQ 173 (286)
T ss_pred Eec---------cCCcccHHHhcCCCCCEEEEecCccce--------EecC---------CCcceEEEEecccchhhHHH
Confidence 999 889999999999999999999999954 4443 13689999999999999999
Q ss_pred HHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCC-C
Q psy581 199 LVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSP-D 277 (343)
Q Consensus 199 ll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~ 277 (343)
++++++.++.+.++++++|+|++.+|+++++||+.++.++|++|.++++++.+...|.+..|++++++|.+++..+.+ .
T Consensus 174 ii~~il~~~~d~tki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~~l~~~~~~~ 253 (286)
T KOG0534|consen 174 LIRAILKDPEDTTKISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKEHLPPPKEGE 253 (286)
T ss_pred HHHHHhcCCCCCcEEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHhhCCCCCCCC
Confidence 999999988678899999999999999999999999999999999999999999999999999999999999988766 6
Q ss_pred cEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 278 NLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 278 ~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
+.+++||| |+|++.++..+|+++||++++||+|
T Consensus 254 ~~~liCGP---------------------------------p~m~~~~~~~~le~Lg~~~~~vf~f 286 (286)
T KOG0534|consen 254 TLVLICGP---------------------------------PPMINGAAQGNLEKLGYNEDQVFVF 286 (286)
T ss_pred eEEEEECC---------------------------------HHHHhHHHHHHHHhcCCChHhEEeC
Confidence 99999999 9999978999999999999999986
No 2
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=5.9e-41 Score=315.11 Aligned_cols=268 Identities=49% Similarity=0.920 Sum_probs=218.8
Q ss_pred cccccccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe----eeeeeceeccCCCCCCeE
Q psy581 39 KELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE----FVARAYTPVTSDEHHGYM 114 (343)
Q Consensus 39 ~~~~~~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~----~~~R~yTi~s~~~~~~~l 114 (343)
.++...+++..++.++|++++.+++++..|+|+++.+.....|+||||+.|.++.++. ...|+|||++.+.+.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i 101 (300)
T PTZ00319 22 RSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYV 101 (300)
T ss_pred cCCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEE
Confidence 4456789999999999999999999999999998665555789999999999976432 578999999998877899
Q ss_pred EEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchH
Q psy581 115 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGIT 194 (343)
Q Consensus 115 ~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIa 194 (343)
+|+||.+....++.++.+|.+|+||+++++||.|.|+||+|.+.+.+++.+.++. +... -.....++++|||||||||
T Consensus 102 ~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~-~~~~-~~~~~~~~illIAgGtGIa 179 (300)
T PTZ00319 102 DFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHK-GKGG-LKTMHVDAFAMIAGGTGIT 179 (300)
T ss_pred EEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeecc-cccc-ccccccceEEEEecCcccC
Confidence 9999987555666677789999999999999999999999987777665555433 1000 0011246899999999999
Q ss_pred hHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecC-CCCCCcccccccCHHHHHhhcCC
Q psy581 195 PMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDR-PEDGWKYSTGFVSAEMIAEHLFP 273 (343)
Q Consensus 195 p~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~l~~~~~~ 273 (343)
|+++|++++..+..+..+++++|++|+.++++|.++|.++. .++ ++++++++++ +...|.+..|++++..+++.++.
T Consensus 180 P~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~ 257 (300)
T PTZ00319 180 PMLQIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDP-RFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPV 257 (300)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCC-CEEEEEEECCCCCCCcccccceeCHHHHHhhcCC
Confidence 99999999887543346899999999999999999999954 555 5999998886 34567778899999877776553
Q ss_pred CC------CCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 274 PS------PDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 274 ~~------~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
.. .+..+|+||| ++|++.+++..|+++|++.++||+|
T Consensus 258 ~~~~~~~~~~~~vyiCGp---------------------------------~~mv~~~~~~~L~~~G~~~~~i~~~ 300 (300)
T PTZ00319 258 PDPQNSGIKKVMALMCGP---------------------------------PPMLQMAVKPNLEKIGYTADNMFTF 300 (300)
T ss_pred ccccccccCCeEEEEECC---------------------------------HHHHHHHHHHHHHHcCCCHHHEEEC
Confidence 22 3578999999 9999966788999999999999987
No 3
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=7.2e-41 Score=350.27 Aligned_cols=263 Identities=52% Similarity=0.980 Sum_probs=235.1
Q ss_pred cccccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEE
Q psy581 41 LKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKV 120 (343)
Q Consensus 41 ~~~~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~ 120 (343)
....++|..+++++|++++.++++++.|+|+++.....+.++||||+.|.+..+++...|+|||++.+.+.+.++|+||+
T Consensus 625 ~~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~ 704 (888)
T PLN02252 625 RPVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKV 704 (888)
T ss_pred cccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEE
Confidence 35678999999999999999999999999998877666789999999999987787889999999998877999999999
Q ss_pred EeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHH
Q psy581 121 YFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV 200 (343)
Q Consensus 121 ~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll 200 (343)
|+++.++.++.+|.+|++|+++++|++|.|+||+|.+.|.+.|.|.++.. ....++++||||||||||++++|
T Consensus 705 ~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~-------~~~~~~vvmIAGGsGITPi~sil 777 (888)
T PLN02252 705 YFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGK-------PKFAKKLAMLAGGTGITPMYQVI 777 (888)
T ss_pred EeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccc-------cccCceEEEEecceehhHHHHHH
Confidence 98888888988999999999999999999999999999999999988751 12357999999999999999999
Q ss_pred HHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC-CCCcccccccCHHHHHhhcCCCCCCcE
Q psy581 201 RHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE-DGWKYSTGFVSAEMIAEHLFPPSPDNL 279 (343)
Q Consensus 201 ~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~l~~~~~~~~~~~~ 279 (343)
++++.++.+.++++|+|++|+.++++|++||+++++++|++|+++++++++. ++|.+..|+++++.+++.+.....+..
T Consensus 778 r~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~~l~~~~~~~~ 857 (888)
T PLN02252 778 QAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLREHLPEGGDETL 857 (888)
T ss_pred HHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHHhcccCCCCeE
Confidence 9998764345789999999999999999999999999977899999998764 678889999999888887755445688
Q ss_pred EEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 280 VLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 280 i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
+|+||| ++|++.+++..|+++|+++++|+.|
T Consensus 858 vyiCGP---------------------------------p~Mi~~av~~~L~~~G~~~~~I~~f 888 (888)
T PLN02252 858 ALMCGP---------------------------------PPMIEFACQPNLEKMGYDKDSILVF 888 (888)
T ss_pred EEEeCC---------------------------------HHHHHHHHHHHHHHcCCCHHHEEEC
Confidence 999999 9999966889999999999999987
No 4
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1.9e-37 Score=280.78 Aligned_cols=233 Identities=56% Similarity=0.996 Sum_probs=199.0
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|++++.+++++..++|+.++......++||||+.|.++.++....|+|||++.+.+.+.++|+||.+ ++
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~---------~~ 71 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIY---------PG 71 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEEC---------CC
Confidence 478999999999999999987754457899999999999877777899999999887778899999986 57
Q ss_pred CccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCcc
Q psy581 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK 212 (343)
Q Consensus 133 G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~ 212 (343)
|.+|+||+++++|++|.++||+| .|.+.. + ...++++||||||||||++++++++........+
T Consensus 72 G~~s~~l~~~~~G~~v~i~gP~G--------~~~~~~-~-------~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~ 135 (234)
T cd06183 72 GKMSQYLHSLKPGDTVEIRGPFG--------KFEYKP-N-------GKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTK 135 (234)
T ss_pred CcchhHHhcCCCCCEEEEECCcc--------ceeecC-C-------CCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcE
Confidence 99999999999999999999999 666544 1 0127899999999999999999999865323578
Q ss_pred EEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCC-CCCCcEEEEeCCCccccc
Q psy581 213 MSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFP-PSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 213 v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~~i~vCGp~~~~~~ 291 (343)
++++|++|+.+++++.++|+++...++.+++++++++++.+.|.+..|+++++.+...+.. ...+..+|+|||
T Consensus 136 i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp------ 209 (234)
T cd06183 136 ISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGP------ 209 (234)
T ss_pred EEEEEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHhCCCCCCCCeEEEEECC------
Confidence 9999999999999999999999988655799998888877777788899998777666543 235678999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
++|++.++++.|+++|+++++|+.|
T Consensus 210 ---------------------------~~~~~~~~~~~l~~~G~~~~~i~~~ 234 (234)
T cd06183 210 ---------------------------PPMIEGAVKGLLKELGYKKDNVFKF 234 (234)
T ss_pred ---------------------------HHHHHHHHHHHHHHcCCCHHHEEeC
Confidence 9999955678899999999999987
No 5
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.2e-36 Score=287.84 Aligned_cols=251 Identities=32% Similarity=0.597 Sum_probs=198.4
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEee---CCeeeeeeceeccCCCCCCeEEEEEEEEee
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATI---NDEFVARAYTPVTSDEHHGYMDLVVKVYFK 123 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~---~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~ 123 (343)
...|++++|++++.++++++.|+|+++.. ..+.+.||||+.+.++. ++....|+|||++.+.+.+.++|+||++
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~-~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~-- 125 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSE-EEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRK-- 125 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcc-cccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEc--
Confidence 67899999999999999999999998653 34789999999987753 2346789999999998778999999987
Q ss_pred cCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 124 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 124 ~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
++|.+|.||+++++||+|.|+||.| .|.+.. ...++++||||||||||+++|++++
T Consensus 126 -------~~G~~S~~L~~lk~Gd~v~v~GP~f--------~~~~~~---------~~~~~lvlIAGGsGITP~lsmlr~~ 181 (325)
T PTZ00274 126 -------KDGLMTNHLFGMHVGDKLLFRSVTF--------KIQYRP---------NRWKHVGMIAGGTGFTPMLQIIRHS 181 (325)
T ss_pred -------CCCcccHHHhcCCCCCEEEEeCCee--------ecccCC---------CCCceEEEEeCCcchhHHHHHHHHH
Confidence 7899999999999999999999988 443332 1247899999999999999999998
Q ss_pred HhCC-----CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC--CCCCcccccccCHHHHHhhcCCCC-
Q psy581 204 TKDP-----TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP--EDGWKYSTGFVSAEMIAEHLFPPS- 275 (343)
Q Consensus 204 ~~~~-----~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~l~~~~~~~~- 275 (343)
+..+ ....+++|+|++|+.++++|.++|++|++.++++|+++++++++ .+.|.+..|+++++.+.+.+....
T Consensus 182 l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~ 261 (325)
T PTZ00274 182 LTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEE 261 (325)
T ss_pred HhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCcc
Confidence 7643 12358999999999999999999999999998779999999864 355777889999977676654322
Q ss_pred CCcEEEEeCCCccccccccCCCCcccceeeeeccccccc------cCC-------C--CcchhhhhhhhHhhCCCCCCce
Q psy581 276 PDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKI------HEG-------P--PPMINFACKPNLDKLGYSEKLR 340 (343)
Q Consensus 276 ~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~-------~--~~~~~~~~~~~L~~~g~~~~~i 340 (343)
....+|+|||+. .++...+.+. ++| | ..+++ ..++|+++|++.+.|
T Consensus 262 ~~~~vylCGPp~-----------------Mm~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 322 (325)
T PTZ00274 262 KKKIIMLCGPDQ-----------------LLNHVAGTPMGTMSSMSSGMNIQPMAPDLNNLVS--LGGILGELGYDNDDV 322 (325)
T ss_pred CCcEEEEeCCHH-----------------HHHHhcCCCccccccccccccccccccccccccc--ccchHHHhCCChhhe
Confidence 346899999922 2222222111 233 1 12333 467999999999999
Q ss_pred EeC
Q psy581 341 FSY 343 (343)
Q Consensus 341 ~~~ 343 (343)
|+|
T Consensus 323 ~~~ 325 (325)
T PTZ00274 323 YRF 325 (325)
T ss_pred ecC
Confidence 987
No 6
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=2.8e-37 Score=288.28 Aligned_cols=241 Identities=26% Similarity=0.438 Sum_probs=195.6
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-----------------------------Cee
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-----------------------------DEF 97 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-----------------------------g~~ 97 (343)
|...++++|++++.++++++.|+|++++.. ...|+||||+.|.++.. +..
T Consensus 6 ~~~~~~~~v~~~~~~~~d~~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (283)
T cd06188 6 GAKKWECTVISNDNVATFIKELVLKLPSGE-EIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEP 84 (283)
T ss_pred ccceEEEEEEEcccccchhhheEEecCCCc-eeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCc
Confidence 356778999999999999999999987643 25799999999998753 233
Q ss_pred eeeeceeccCCCCCCeEEEEEEEEeecC-CCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCC
Q psy581 98 VARAYTPVTSDEHHGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 176 (343)
Q Consensus 98 ~~R~yTi~s~~~~~~~l~~~Vk~~~~~~-~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~ 176 (343)
..|+|||++.+.+.+.++|+||.+..+. .++. ++|.+|+||+++++|++|.|+||+| .|.+..
T Consensus 85 ~~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~-~~G~~S~~L~~l~~Gd~v~i~gP~G--------~f~l~~------- 148 (283)
T cd06188 85 VSRAYSLANYPAEEGELKLNVRIATPPPGNSDI-PPGIGSSYIFNLKPGDKVTASGPFG--------EFFIKD------- 148 (283)
T ss_pred cccccCcCCCCCCCCeEEEEEEEeccCCccCCC-CCceehhHHhcCCCCCEEEEECccc--------cccccC-------
Confidence 5699999999877789999999742110 0011 3689999999999999999999999 555543
Q ss_pred CCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC--CC
Q psy581 177 TNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DG 254 (343)
Q Consensus 177 ~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~--~~ 254 (343)
..++++||||||||||+++|+++++.......+++|+|++|+.++++|.++|+++.+++++ ++++++++++. +.
T Consensus 149 ---~~~~~vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~ 224 (283)
T cd06188 149 ---TDREMVFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPN-FKYHPVLSEPQPEDN 224 (283)
T ss_pred ---CCCcEEEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCC-eEEEEEECCCCccCC
Confidence 2578999999999999999999987654234689999999999999999999999998885 99988887654 56
Q ss_pred CcccccccCHHHHHhhcCC--CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh
Q psy581 255 WKYSTGFVSAEMIAEHLFP--PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK 332 (343)
Q Consensus 255 ~~~~~g~~~~~~l~~~~~~--~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (343)
|.+..|++++..+...+.. ...+..+|+||| ++|++ ++..+|++
T Consensus 225 ~~~~~G~v~~~~~~~~~~~~~~~~~~~vyiCGP---------------------------------~~m~~-~~~~~l~~ 270 (283)
T cd06188 225 WDGYTGFIHQVLLENYLKKHPAPEDIEFYLCGP---------------------------------PPMNS-AVIKMLDD 270 (283)
T ss_pred CCCcceeecHHHHHHHhccCCCCCCeEEEEECC---------------------------------HHHHH-HHHHHHHH
Confidence 7778899988665554321 124578999999 99999 88899999
Q ss_pred CCCCCCceEe
Q psy581 333 LGYSEKLRFS 342 (343)
Q Consensus 333 ~g~~~~~i~~ 342 (343)
+|+++++|++
T Consensus 271 ~Gv~~~~i~~ 280 (283)
T cd06188 271 LGVPRENIAF 280 (283)
T ss_pred cCCCHHHeec
Confidence 9999999985
No 7
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.2e-36 Score=291.03 Aligned_cols=230 Identities=20% Similarity=0.362 Sum_probs=196.9
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
.+..+.+++|++++.++++++.|+|+.+.......|+||||+.|.++. ....|+|||++.+.+.+.++|+||.+
T Consensus 102 ~~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySias~p~~~~~l~~~ik~~---- 175 (340)
T PRK11872 102 GDTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPG--TDDWRSYSFANRPNATNQLQFLIRLL---- 175 (340)
T ss_pred cccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCC--CCceeecccCCCCCCCCeEEEEEEEC----
Confidence 355778899999999999999999998754445789999999999863 33579999999987778999999987
Q ss_pred CCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 126 HPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
++|.+|+||+ ++++|++|.|+||+| .|.++. ..++++||||||||||++++++++.
T Consensus 176 -----~~G~~s~~L~~~l~~G~~v~i~gP~G--------~f~l~~----------~~~~~vliagGtGiaP~~s~l~~~~ 232 (340)
T PRK11872 176 -----PDGVMSNYLRERCQVGDEILFEAPLG--------AFYLRE----------VERPLVFVAGGTGLSAFLGMLDELA 232 (340)
T ss_pred -----CCCcchhhHhhCCCCCCEEEEEcCcc--------eeEeCC----------CCCcEEEEeCCcCccHHHHHHHHHH
Confidence 7889999995 699999999999999 565544 2478999999999999999999988
Q ss_pred hCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeC
Q psy581 205 KDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCG 284 (343)
Q Consensus 205 ~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCG 284 (343)
... ...+++|+|++|+.++++|.++|++|++++++ |+++.++++++++|.+..|++.+......+. .....+|+||
T Consensus 233 ~~~-~~~~v~l~~g~r~~~dl~~~~el~~~~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~l~--~~~~~vy~CG 308 (340)
T PRK11872 233 EQG-CSPPVHLYYGVRHAADLCELQRLAAYAERLPN-FRYHPVVSKASADWQGKRGYIHEHFDKAQLR--DQAFDMYLCG 308 (340)
T ss_pred HcC-CCCcEEEEEecCChHHhccHHHHHHHHHHCCC-cEEEEEEeCCCCcCCCceeeccHHHHHhhcC--cCCCEEEEeC
Confidence 754 44689999999999999999999999999985 9999998887777888889998754444332 2346799999
Q ss_pred CCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 285 PPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 285 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
| |+|++ ++...|+++|+++++||+
T Consensus 309 p---------------------------------~~mv~-~~~~~L~~~Gv~~~~i~~ 332 (340)
T PRK11872 309 P---------------------------------PPMVE-AVKQWLDEQALENYRLYY 332 (340)
T ss_pred C---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 9 99999 888999999999999985
No 8
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=2.5e-36 Score=273.89 Aligned_cols=229 Identities=28% Similarity=0.505 Sum_probs=195.1
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEee-CCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~-~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
|.+++|++++.+++++++++|+.++.. ...|+||||+.|.++. ++....|+|||++.+.+.+.++|+||.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~------- 72 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV------- 72 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC-cCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEc-------
Confidence 567999999999999999999988754 4689999999999973 4455679999999988778999999986
Q ss_pred CCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
.+|.+|.||+ .+++||.|.|.||+| .|.+.. ...++++|||||+||||++++++++....
T Consensus 73 --~~G~~s~~l~~~l~~Gd~v~i~gP~G--------~~~~~~---------~~~~~~vliagG~Giap~~~~~~~~~~~~ 133 (235)
T cd06217 73 --PGGEVSPYLHDEVKVGDLLEVRGPIG--------TFTWNP---------LHGDPVVLLAGGSGIVPLMSMIRYRRDLG 133 (235)
T ss_pred --CCCcchHHHHhcCCCCCEEEEeCCce--------eeEeCC---------CCCceEEEEecCcCccHHHHHHHHHHhcC
Confidence 6789999997 489999999999999 565543 02578999999999999999999998764
Q ss_pred CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC-CCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCC
Q psy581 208 TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP-EDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~ 286 (343)
...+++++|++|+.+++++.++|.++.+++++ ++++.+++++ .+.+.+..|+++...+.+.... ..+..+|+|||
T Consensus 134 -~~~~i~l~~~~r~~~~~~~~~el~~~~~~~~~-~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp- 209 (235)
T cd06217 134 -WPVPFRLLYSARTAEDVIFRDELEQLARRHPN-LHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGP- 209 (235)
T ss_pred -CCceEEEEEecCCHHHhhHHHHHHHHHHHCCC-eEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECC-
Confidence 45789999999999999999999999988774 9988888876 4556677899998766665332 35679999999
Q ss_pred ccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 287 RKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++.+.|+++|+++++|+.
T Consensus 210 --------------------------------~~m~~-~v~~~l~~~Gv~~~~i~~ 232 (235)
T cd06217 210 --------------------------------PAFVE-AATRLLLELGVPRDRIRT 232 (235)
T ss_pred --------------------------------HHHHH-HHHHHHHHcCCCHHHEee
Confidence 99999 889999999999999975
No 9
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.4e-36 Score=273.41 Aligned_cols=226 Identities=31% Similarity=0.563 Sum_probs=194.3
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
.+|+++++++++++.|+|+.+... ...|+||||+.|.++.++....|+|||++.+.+.+.++|+||.+ .+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~ 70 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGS-LFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRV---------PG 70 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCC-cCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEc---------CC
Confidence 378999999999999999988754 36799999999999877777789999999988778899999986 67
Q ss_pred Cccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|+||+ ++++|++|.|+||+| .|.+.. ...++++||||||||||++++++++.... ...
T Consensus 71 G~~s~~l~~~~~~G~~v~i~gP~G--------~f~~~~---------~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~ 132 (231)
T cd06215 71 GLVSNWLHDNLKVGDELWASGPAG--------EFTLID---------HPADKLLLLSAGSGITPMMSMARWLLDTR-PDA 132 (231)
T ss_pred CcchHHHHhcCCCCCEEEEEcCcc--------eeEeCC---------CCCCcEEEEecCcCcchHHHHHHHHHhcC-CCC
Confidence 99999995 799999999999999 666544 12578999999999999999999988754 456
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCC-CcccccccCHHHHHhhcCCCCCCcEEEEeCCCcccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDG-WKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTV 290 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~ 290 (343)
+++++|++|+.+++++.++|.++.+++++ ++++++++++... |.+..|+++.+.+.+.+.. ..+..+|+|||
T Consensus 133 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp----- 205 (231)
T cd06215 133 DIVFIHSARSPADIIFADELEELARRHPN-FRLHLILEQPAPGAWGGYRGRLNAELLALLVPD-LKERTVFVCGP----- 205 (231)
T ss_pred cEEEEEecCChhhhhHHHHHHHHHHHCCC-eEEEEEEccCCCCcccccCCcCCHHHHHHhcCC-ccCCeEEEECC-----
Confidence 89999999999999999999999998874 9998888876553 6778899988777665543 24568999999
Q ss_pred ccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 291 KNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ .+++.|+++|++.++|++
T Consensus 206 ----------------------------~~m~~-~~~~~l~~~gv~~~~i~~ 228 (231)
T cd06215 206 ----------------------------AGFMK-AVKSLLAELGFPMSRFHQ 228 (231)
T ss_pred ----------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999985
No 10
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=3.1e-36 Score=274.31 Aligned_cols=230 Identities=24% Similarity=0.455 Sum_probs=193.5
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCC
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH 126 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~ 126 (343)
|...+.++|++++.++++++.|+|+.+.... ..|+||||+.|.++.. ...|+|||++.+.+.+.++|+||.+
T Consensus 3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~-~~~~pGQ~v~l~~~~~--~~~r~ySi~s~~~~~~~l~l~i~~~----- 74 (238)
T cd06211 3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPEE-IEFQAGQYVNLQAPGY--EGTRAFSIASSPSDAGEIELHIRLV----- 74 (238)
T ss_pred CceEEeEEEEEEEecCCCEEEEEEEcCCCCc-CccCCCCeEEEEcCCC--CCccccccCCCCCCCCEEEEEEEEC-----
Confidence 5567789999999999999999999876532 4799999999998633 3579999999987778999999986
Q ss_pred CCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 127 PKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 127 ~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
++|.+|+||+ .+++|++|.|+||+| .|.+.. ...++++|||||+||||++++++++..
T Consensus 75 ----~~G~~s~~l~~~l~~G~~v~i~gP~G--------~~~~~~---------~~~~~~v~iagG~GiaP~~~~l~~~~~ 133 (238)
T cd06211 75 ----PGGIATTYVHKQLKEGDELEISGPYG--------DFFVRD---------SDQRPIIFIAGGSGLSSPRSMILDLLE 133 (238)
T ss_pred ----CCCcchhhHhhcCCCCCEEEEECCcc--------ceEecC---------CCCCCEEEEeCCcCHHHHHHHHHHHHh
Confidence 6899999996 799999999999999 555543 124789999999999999999999987
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC--CCCcccccccCHHHHHhhcCCCCCCcEEEEe
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DGWKYSTGFVSAEMIAEHLFPPSPDNLVLMC 283 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vC 283 (343)
.+ ...+++++|++|+.+++++.++|+++.+.+++ ++++.+++++. +.|.+..|++++ .+.+.+.....+..+|+|
T Consensus 134 ~~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyvC 210 (238)
T cd06211 134 RG-DTRKITLFFGARTRAELYYLDEFEALEKDHPN-FKYVPALSREPPESNWKGFTGFVHD-AAKKHFKNDFRGHKAYLC 210 (238)
T ss_pred cC-CCCcEEEEEecCChhhhccHHHHHHHHHhCCC-eEEEEEECCCCCCcCcccccCcHHH-HHHHhcccccccCEEEEE
Confidence 65 34689999999999999999999999988885 99888888643 456667888875 566655423356789999
Q ss_pred CCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 284 GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 284 Gp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
|| ++|++ ++..+|.++|+++++||+
T Consensus 211 Gp---------------------------------~~m~~-~~~~~L~~~Gv~~~~i~~ 235 (238)
T cd06211 211 GP---------------------------------PPMID-ACIKTLMQGRLFERDIYY 235 (238)
T ss_pred CC---------------------------------HHHHH-HHHHHHHHcCCCHHHccc
Confidence 99 99999 888999999999999985
No 11
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=3e-36 Score=273.77 Aligned_cols=227 Identities=22% Similarity=0.435 Sum_probs=191.5
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCC---CccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSA---EHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHP 127 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~---~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~ 127 (343)
++++|+++++++++++.++|+.+.. .....|+||||+.|.++. ....|+|||++.+.+.+.++|+||.+
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~~~~~l~~~i~~~------ 73 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPG--TDTRRSYSLANTPNWDGRLEFLIRLL------ 73 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCC--CccceecccCCCCCCCCEEEEEEEEc------
Confidence 4689999999999999999998765 234789999999999873 33689999999987678999999986
Q ss_pred CCCCCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC
Q psy581 128 KFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 206 (343)
Q Consensus 128 ~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~ 206 (343)
++|.+|+||++ +++|++|.|+||+| .|.++. ...++++||||||||||++++++++...
T Consensus 74 ---~~G~~s~~l~~~~~~Gd~v~i~gP~G--------~f~l~~---------~~~~~~vliagGtGiaP~~~~l~~~~~~ 133 (236)
T cd06210 74 ---PGGAFSTYLETRAKVGQRLNLRGPLG--------AFGLRE---------NGLRPRWFVAGGTGLAPLLSMLRRMAEW 133 (236)
T ss_pred ---CCCccchhhhhCcCCCCEEEEecCcc--------eeeecC---------CCCccEEEEccCcchhHHHHHHHHHHhc
Confidence 67999999976 99999999999999 666554 1247899999999999999999998765
Q ss_pred CCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCC
Q psy581 207 PTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286 (343)
Q Consensus 207 ~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~ 286 (343)
. ...+++++|++|+.+++++.++|+++.+.+++ ++++++++++.++|.+..|++... +.+.+........+|+|||
T Consensus 134 ~-~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~-l~~~l~~~~~~~~vyicGp- 209 (236)
T cd06210 134 G-EPQEARLFFGVNTEAELFYLDELKRLADSLPN-LTVRICVWRPGGEWEGYRGTVVDA-LREDLASSDAKPDIYLCGP- 209 (236)
T ss_pred C-CCceEEEEEecCCHHHhhhHHHHHHHHHhCCC-eEEEEEEcCCCCCcCCccCcHHHH-HHHhhcccCCCcEEEEeCC-
Confidence 4 34689999999999999999999999999885 999999887766677777888663 4544433334568999999
Q ss_pred ccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 287 RKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ .++..|++.|+++++|+.
T Consensus 210 --------------------------------~~m~~-~~~~~l~~~G~~~~~i~~ 232 (236)
T cd06210 210 --------------------------------PGMVD-AAFAAAREAGVPDEQVYL 232 (236)
T ss_pred --------------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999875
No 12
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=9.4e-36 Score=272.42 Aligned_cols=230 Identities=27% Similarity=0.431 Sum_probs=194.9
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC--eeeeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g--~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
+.++.++|++++++++++.+|+|+.+.......|+||||+.|.++.++ ....|+|||++.+.+ +.++|+||.+
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~---- 78 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKRE---- 78 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEc----
Confidence 468899999999999999999999876544467999999999997655 468899999998865 4899999975
Q ss_pred CCCCCCCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 126 HPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
++|.+|+||++ +++|++|.|+||+| .|.++. ...++++||||||||||++++++++.
T Consensus 79 -----~~G~~s~~l~~~~~~Gd~v~i~gP~G--------~~~~~~---------~~~~~llliagGtGiaP~~~~l~~~~ 136 (247)
T cd06184 79 -----PGGLVSNYLHDNVKVGDVLEVSAPAG--------DFVLDE---------ASDRPLVLISAGVGITPMLSMLEALA 136 (247)
T ss_pred -----CCCcchHHHHhcCCCCCEEEEEcCCC--------ceECCC---------CCCCcEEEEeccccHhHHHHHHHHHH
Confidence 67999999986 99999999999999 565543 12578999999999999999999998
Q ss_pred hCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCC----cccccccCHHHHHhhcCCCCCCcEE
Q psy581 205 KDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGW----KYSTGFVSAEMIAEHLFPPSPDNLV 280 (343)
Q Consensus 205 ~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~l~~~~~~~~~~~~i 280 (343)
... ...+++++|++|+.++++|.++|.++.+.++ +++++++++++.+.+ .+..|++..+.+.+... ..+..+
T Consensus 137 ~~~-~~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~v 212 (247)
T cd06184 137 AEG-PGRPVTFIHAARNSAVHAFRDELEELAARLP-NLKLHVFYSEPEAGDREEDYDHAGRIDLALLRELLL--PADADF 212 (247)
T ss_pred hcC-CCCcEEEEEEcCchhhHHHHHHHHHHHhhCC-CeEEEEEECCCCcccccccccccCccCHHHHhhccC--CCCCEE
Confidence 753 4578999999999999999999999988877 499998888765432 45678988766665332 356899
Q ss_pred EEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 281 LMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 281 ~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
|+||| ++|++ ++..+|.++|+++++|++
T Consensus 213 ~icGp---------------------------------~~m~~-~v~~~l~~~G~~~~~i~~ 240 (247)
T cd06184 213 YLCGP---------------------------------VPFMQ-AVREGLKALGVPAERIHY 240 (247)
T ss_pred EEECC---------------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 99999 888999999999999985
No 13
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=9.1e-36 Score=269.36 Aligned_cols=222 Identities=27% Similarity=0.505 Sum_probs=187.6
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
.+++|++++.++++++.|+|+.+.. ....|+||||+.|.++. ....|+|||++.+.+ +.++|+||.+
T Consensus 2 ~~~~V~~~~~~t~~~~~l~l~~~~~-~~~~~~pGQ~v~l~~~~--~~~~r~ysi~s~~~~-~~i~~~i~~~--------- 68 (228)
T cd06209 2 FEATVTEVERLSDSTIGLTLELDEA-GALAFLPGQYVNLQVPG--TDETRSYSFSSAPGD-PRLEFLIRLL--------- 68 (228)
T ss_pred eeEEEEEEEEcCCCeEEEEEEcCCC-CcCccCCCCEEEEEeCC--CCcccccccccCCCC-CeEEEEEEEc---------
Confidence 3689999999999999999998774 33689999999999863 335799999998877 8999999986
Q ss_pred CCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC
Q psy581 131 DGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 209 (343)
Q Consensus 131 ~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~ 209 (343)
++|.+|+||++ +++|++|.|+||+| .|.+.. ..++++||||||||||++++++++.... .
T Consensus 69 ~~G~~s~~l~~~l~~G~~v~v~gP~G--------~~~~~~----------~~~~~vlia~GtGIaP~~~ll~~~~~~~-~ 129 (228)
T cd06209 69 PGGAMSSYLRDRAQPGDRLTLTGPLG--------SFYLRE----------VKRPLLMLAGGTGLAPFLSMLDVLAEDG-S 129 (228)
T ss_pred CCCcchhhHHhccCCCCEEEEECCcc--------cceecC----------CCCeEEEEEcccCHhHHHHHHHHHHhcC-C
Confidence 68999999976 99999999999999 554443 2478999999999999999999988765 4
Q ss_pred CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccc
Q psy581 210 NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKT 289 (343)
Q Consensus 210 ~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~ 289 (343)
..+++++|++|+.+++++.++++++.+++++ ++++.+++++.. |.+..|++........+. ..+..+|+|||
T Consensus 130 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~s~~~~-~~~~~g~v~~~~~~~~~~--~~~~~v~icGp---- 201 (228)
T cd06209 130 AHPVHLVYGVTRDADLVELDRLEALAERLPG-FSFRTVVADPDS-WHPRKGYVTDHLEAEDLN--DGDVDVYLCGP---- 201 (228)
T ss_pred CCcEEEEEecCCHHHhccHHHHHHHHHhCCC-eEEEEEEcCCCc-cCCCcCCccHHHHHhhcc--CCCcEEEEeCC----
Confidence 5689999999999999999999999998885 999888887544 666778887743333232 24578999999
Q ss_pred cccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 290 VKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ +++..|.++|+++++|++
T Consensus 202 -----------------------------~~m~~-~~~~~l~~~G~~~~~i~~ 224 (228)
T cd06209 202 -----------------------------PPMVD-AVRSWLDEQGIEPANFYY 224 (228)
T ss_pred -----------------------------HHHHH-HHHHHHHHcCCCHHHEee
Confidence 99999 888999999999999985
No 14
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=100.00 E-value=9.6e-36 Score=286.15 Aligned_cols=233 Identities=24% Similarity=0.414 Sum_probs=188.8
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCC-ccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAE-HVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~-~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
++.++|++++.++++++.|+|+.+... ....|+||||+.|.++.++....|+|||++.+. .+.++|+||.+
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~------- 72 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKI------- 72 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEe-------
Confidence 467899999999999999999987542 346799999999999877767789999999875 47899999987
Q ss_pred CCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
.+|.+|.||+ ++++||+|.|.||+| .|.++. + ....++++|||||+||||+++|+++++...
T Consensus 73 --~~G~~S~~l~~~l~~Gd~v~v~gP~G--------~f~~~~-~------~~~~~~~lliagG~GItP~~s~l~~~~~~~ 135 (352)
T TIGR02160 73 --PGGLFSTWANDEIRPGDTLEVMAPQG--------LFTPDL-S------TPHAGHYVAVAAGSGITPMLSIAETVLAAE 135 (352)
T ss_pred --CCCcchHHHHhcCCCCCEEEEeCCce--------eeecCC-C------ccccccEEEEeccccHhHHHHHHHHHHhcC
Confidence 6799999995 899999999999999 565543 0 012478999999999999999999987654
Q ss_pred CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcC---CCCCCcEEEEeC
Q psy581 208 TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLF---PPSPDNLVLMCG 284 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---~~~~~~~i~vCG 284 (343)
...+++|+|++|+.++++|.++|++|.+.++++++++.+++++.+.+.+..|+++...+.+.+. .......+|+||
T Consensus 136 -~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCG 214 (352)
T TIGR02160 136 -PRSTFTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCG 214 (352)
T ss_pred -CCceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEEC
Confidence 3578999999999999999999999998888779999888877666666678887655554432 123457899999
Q ss_pred CCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 285 PPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 285 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
| ++|++ ++++.|.++|+++++|+.
T Consensus 215 p---------------------------------~~m~~-~v~~~L~~~Gv~~~~i~~ 238 (352)
T TIGR02160 215 P---------------------------------QAMVD-DAEQALTGLGVPAGRVHL 238 (352)
T ss_pred C---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 9 77777 666677777777776664
No 15
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=6e-36 Score=269.93 Aligned_cols=220 Identities=27% Similarity=0.485 Sum_probs=187.6
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|+++++++++++.|+|+.+. ...|.||||+.|.++.. ..|+|||++.+.+.+.++|+||.+ .+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~---~~~~~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~---------~~ 65 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPA---PLDFLAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAV---------PG 65 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCC---CcccCCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEec---------CC
Confidence 4789999999999999999875 37899999999998632 379999999987678999999986 67
Q ss_pred Cccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|++|. .+++|++|.|+||+| .|.+.. ...++++|||||+||||++++++++.... ...
T Consensus 66 G~~s~~l~~~l~~G~~v~i~gP~G--------~~~~~~---------~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~ 127 (224)
T cd06189 66 GSFSDYVFEELKENGLVRIEGPLG--------DFFLRE---------DSDRPLILIAGGTGFAPIKSILEHLLAQG-SKR 127 (224)
T ss_pred CccHHHHHHhccCCCEEEEecCCc--------cEEecc---------CCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCC
Confidence 99999996 599999999999999 555543 12578999999999999999999998764 457
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+++++|++|+.+++++.++|+++.+++++ ++++.+++++.++|.+..|++++..++.. .. ..+..+|+|||
T Consensus 128 ~v~l~~~~r~~~~~~~~~~l~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~~~~-~~-~~~~~v~vCGp------ 198 (224)
T cd06189 128 PIHLYWGARTEEDLYLDELLEAWAEAHPN-FTYVPVLSEPEEGWQGRTGLVHEAVLEDF-PD-LSDFDVYACGS------ 198 (224)
T ss_pred CEEEEEecCChhhccCHHHHHHHHHhCCC-eEEEEEeCCCCcCCccccccHHHHHHhhc-cC-ccccEEEEECC------
Confidence 89999999999999999999999988875 99988888877777778888877544433 22 34678999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ .++.+|.++|+++++||+
T Consensus 199 ---------------------------~~m~~-~~~~~l~~~G~~~~~i~~ 221 (224)
T cd06189 199 ---------------------------PEMVY-AARDDFVEKGLPEENFFS 221 (224)
T ss_pred ---------------------------HHHHH-HHHHHHHHcCCCHHHccc
Confidence 99999 889999999999999985
No 16
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=2.7e-35 Score=268.80 Aligned_cols=224 Identities=23% Similarity=0.398 Sum_probs=192.3
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCC-CCCeEEEEEEEEeecCC
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVH 126 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~ 126 (343)
...+.++|++++.+++++++|+|+.+.. ...|+||||+.|.++.++....|+|||++.+. +.+.++|+||.+
T Consensus 15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~----- 87 (243)
T cd06216 15 ARELRARVVAVRPETADMVTLTLRPNRG--WPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ----- 87 (243)
T ss_pred cceeEEEEEEEEEcCCCcEEEEEecCCC--CCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc-----
Confidence 4567899999999999999999997654 46799999999999878877899999999887 568999999986
Q ss_pred CCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 127 PKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 127 ~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
++|.+|.||+ .+++|++|.|+||+| .|.++. ...++++|||||+||||++++++++..
T Consensus 88 ----~~G~~s~~l~~~~~~Gd~v~i~gP~G--------~f~l~~---------~~~~~~v~iagG~Giap~~s~l~~~~~ 146 (243)
T cd06216 88 ----PDGLVSNWLVNHLAPGDVVELSQPQG--------DFVLPD---------PLPPRLLLIAAGSGITPVMSMLRTLLA 146 (243)
T ss_pred ----CCCcchhHHHhcCCCCCEEEEECCce--------eeecCC---------CCCCCEEEEecCccHhHHHHHHHHHHh
Confidence 6799999997 599999999999999 666654 125789999999999999999999987
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCC
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp 285 (343)
.. ...++.++|++|+.+++++.++|+++.+++++ ++++++.+++ +..|++..+.+.+...+ ..+..+|+|||
T Consensus 147 ~~-~~~~i~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~-----~~~g~~~~~~l~~~~~~-~~~~~vyvcGp 218 (243)
T cd06216 147 RG-PTADVVLLYYARTREDVIFADELRALAAQHPN-LRLHLLYTRE-----ELDGRLSAAHLDAVVPD-LADRQVYACGP 218 (243)
T ss_pred cC-CCCCEEEEEEcCChhhhHHHHHHHHHHHhCCC-eEEEEEEcCC-----ccCCCCCHHHHHHhccC-cccCeEEEECC
Confidence 64 45789999999999999999999999888775 8888877764 35688888777766543 34579999999
Q ss_pred CccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 286 PRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 286 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++...|+++|++ ++|++
T Consensus 219 ---------------------------------~~m~~-~~~~~l~~~Gv~-~~i~~ 240 (243)
T cd06216 219 ---------------------------------PGFLD-AAEELLEAAGLA-DRLHT 240 (243)
T ss_pred ---------------------------------HHHHH-HHHHHHHHCCCc-cceee
Confidence 99999 888999999999 99985
No 17
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=1.3e-35 Score=283.09 Aligned_cols=229 Identities=20% Similarity=0.356 Sum_probs=186.7
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
++..++.++|++++.++++++.|+|+.++ ...|+||||+.|.++. +....|+|||++.+.+.+.++|+||.+
T Consensus 5 ~~~~~~~~~V~~i~~~t~~v~~l~l~~~~---~~~f~pGQfv~l~~~~-~~~~~R~ySias~p~~~~~l~i~Vk~~---- 76 (332)
T PRK10684 5 TPQCPNRMQVHSIVQETPDVWTISLICHD---FYPYRAGQYALVSIRN-SAETLRAYTLSSTPGVSEFITLTVRRI---- 76 (332)
T ss_pred CCCCceeEEEEEEEccCCCeEEEEEcCCC---CCCcCCCCEEEEEecC-CCEeeeeecccCCCCCCCcEEEEEEEc----
Confidence 44456689999999999999999998654 3679999999999874 334679999999987778899999986
Q ss_pred CCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 126 HPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
++|.+|+||+ ++++||+|.++||+| .|.++. ...++++|||||+||||+++|++++.
T Consensus 77 -----~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~l~~---------~~~~~~vliAgG~GItP~~sml~~~~ 134 (332)
T PRK10684 77 -----DDGVGSQWLTRDVKRGDYLWLSDAMG--------EFTCDD---------KAEDKYLLLAAGCGVTPIMSMRRWLL 134 (332)
T ss_pred -----CCCcchhHHHhcCCCCCEEEEeCCcc--------ccccCC---------CCCCcEEEEecCcCcchHHHHHHHHH
Confidence 7899999995 799999999999999 565543 12468999999999999999999987
Q ss_pred hCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeC
Q psy581 205 KDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCG 284 (343)
Q Consensus 205 ~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCG 284 (343)
... ...+++|+|++|+.++++|.+||.+|.+++++ ++++++.++.. ...+..|+++.+.+.+.+... .+..+|+||
T Consensus 135 ~~~-~~~~v~l~y~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~~~~~-~~~~~~grl~~~~l~~~~~~~-~~~~vyiCG 210 (332)
T PRK10684 135 KNR-PQADVQVIFNVRTPQDVIFADEWRQLKQRYPQ-LNLTLVAENNA-TEGFIAGRLTRELLQQAVPDL-ASRTVMTCG 210 (332)
T ss_pred hcC-CCCCEEEEEeCCChHHhhhHHHHHHHHHHCCC-eEEEEEeccCC-CCCccccccCHHHHHHhcccc-cCCEEEEEC
Confidence 654 34789999999999999999999999999885 88877765432 223367999987777655432 457899999
Q ss_pred CCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 285 PPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 285 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
| ++||+ ++..+|+++|+++++|++
T Consensus 211 P---------------------------------~~m~~-~v~~~l~~~Gv~~~~i~~ 234 (332)
T PRK10684 211 P---------------------------------APYMD-WVEQEVKALGVTADRFFK 234 (332)
T ss_pred C---------------------------------HHHHH-HHHHHHHHcCCCHHHeEe
Confidence 9 77777 667777777777777764
No 18
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=3.4e-35 Score=266.09 Aligned_cols=224 Identities=23% Similarity=0.412 Sum_probs=187.1
Q ss_pred EEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCC
Q psy581 54 KLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 54 ~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
+|++++.+++++++|+|+.+... ...|+||||+.|.++.++....|+|||++.+. .+.++|+||.+ ++|
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~---------~~G 70 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPL-QYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRV---------PGG 70 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCC-CCCCCCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEEC---------CCC
Confidence 68999999999999999976543 35789999999999877777889999999876 58899999986 679
Q ss_pred ccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCcc
Q psy581 134 KMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTK 212 (343)
Q Consensus 134 ~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~ 212 (343)
.+|+||+ ++++|++|.|+||+| .|.+.+ ...++++||||||||||++++++++.... ...+
T Consensus 71 ~~s~~l~~~~~~Gd~v~i~gP~G--------~f~l~~---------~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~ 132 (231)
T cd06191 71 RVSNYLREHIQPGMTVEVMGPQG--------HFVYQP---------QPPGRYLLVAAGSGITPLMAMIRATLQTA-PESD 132 (231)
T ss_pred ccchHHHhcCCCCCEEEEeCCcc--------ceEeCC---------CCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCC
Confidence 9999997 799999999999999 666654 12478999999999999999999987654 4578
Q ss_pred EEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC--CCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcccc
Q psy581 213 MSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTV 290 (343)
Q Consensus 213 v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~ 290 (343)
++++|++|+.++++|.++|+++.++++ +++++++++++. +.|.+..|++..+......+ ...+..+|+|||
T Consensus 133 v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~vyicGp----- 205 (231)
T cd06191 133 FTLIHSARTPADMIFAQELRELADKPQ-RLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIP-DRLEREAFICGP----- 205 (231)
T ss_pred EEEEEecCCHHHHhHHHHHHHHHHhCC-CeEEEEEECCCCCCccccCCcccccHHHHHHhCc-cccCCeEEEECC-----
Confidence 999999999999999999999988777 499998888643 34555667776544443332 233578999999
Q ss_pred ccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 291 KNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++...|.++|+++++|++
T Consensus 206 ----------------------------~~mv~-~~~~~l~~~G~~~~~i~~ 228 (231)
T cd06191 206 ----------------------------AGMMD-AVETALKELGMPPERIHT 228 (231)
T ss_pred ----------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999985
No 19
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=2.9e-35 Score=265.95 Aligned_cols=220 Identities=25% Similarity=0.456 Sum_probs=185.2
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD 131 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~ 131 (343)
+++|++++.+++++++++|+.+. ...|+||||+.|.++... ..|+|||++.+.+.+.++|+||.+ +
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~---~~~~~pGQ~~~l~~~~~~--~~r~ysi~s~~~~~~~l~~~vk~~---------~ 67 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDR---PIAYKAGQYAELTLPGLP--AARSYSFANAPQGDGQLSFHIRKV---------P 67 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCC---CCCcCCCCEEEEEeCCCC--cccccccCCCCCCCCEEEEEEEEC---------C
Confidence 57899999999999999998764 267999999999986433 689999999987778999999986 6
Q ss_pred CCccchhh-hcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCC
Q psy581 132 GGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDN 210 (343)
Q Consensus 132 ~G~~S~~L-~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~ 210 (343)
+|.+|+|| ..+++||+|.|+||+| .|.+.. ..++++|||||+||||++++++++.... ..
T Consensus 68 ~G~~s~~l~~~l~~G~~v~i~gP~G--------~~~~~~----------~~~~~lliagG~GiaP~~~~~~~~~~~~-~~ 128 (227)
T cd06213 68 GGAFSGWLFGADRTGERLTVRGPFG--------DFWLRP----------GDAPILCIAGGSGLAPILAILEQARAAG-TK 128 (227)
T ss_pred CCcchHHHHhcCCCCCEEEEeCCCc--------ceEeCC----------CCCcEEEEecccchhHHHHHHHHHHhcC-CC
Confidence 79999999 5699999999999999 665544 2478999999999999999999998765 45
Q ss_pred ccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC--CCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 211 TKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 211 ~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
.+++++|++|+.+++++.++|.+++..++.+++++.+++++. ..|.+..|++.+ .+.+.. ..+..+|+|||
T Consensus 129 ~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~-~l~~~~---~~~~~v~~CGp--- 201 (227)
T cd06213 129 RDVTLLFGARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTE-HIAEVL---LAATEAYLCGP--- 201 (227)
T ss_pred CcEEEEEeeCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHH-HHHhhc---cCCCEEEEECC---
Confidence 689999999999999999999999987655799888887653 335566677765 345444 24578999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ +++..|.++|+++++|++
T Consensus 202 ------------------------------~~~~~-~~~~~l~~~G~~~~~i~~ 224 (227)
T cd06213 202 ------------------------------PAMID-AAIAVLRALGIAREHIHA 224 (227)
T ss_pred ------------------------------HHHHH-HHHHHHHHcCCCHHHEec
Confidence 99999 889999999999999985
No 20
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=5.4e-35 Score=268.81 Aligned_cols=224 Identities=25% Similarity=0.400 Sum_probs=187.1
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCC
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHP 127 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~ 127 (343)
..+++.+|+++++++++++.|+|+.++.... .|+||||+.|.++.++....|.||++|.|.++..+.|.||+.
T Consensus 3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~-~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~------ 75 (266)
T COG1018 3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLRL-DFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKRE------ 75 (266)
T ss_pred CceEEEEEEEEEEecCceEEEEEEcCCCCcc-ccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEe------
Confidence 4688999999999999999999999887543 799999999999988889999999999998878999999986
Q ss_pred CCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC
Q psy581 128 KFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 206 (343)
Q Consensus 128 ~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~ 206 (343)
.+|.+|+||+ ++++||+|.|.+|.| .|.++.. ...+++|||||+||||++||++.+...
T Consensus 76 ---~~G~~S~~Lh~~lk~Gd~l~v~~P~G--------~F~l~~~---------~~~~~llla~G~GITP~lSml~~~~~~ 135 (266)
T COG1018 76 ---DGGGGSNWLHDHLKVGDTLEVSAPAG--------DFVLDDL---------PERKLLLLAGGIGITPFLSMLRTLLDR 135 (266)
T ss_pred ---CCCcccHHHHhcCCCCCEEEEecCCC--------CccCCCC---------CCCcEEEEeccccHhHHHHHHHHHHHh
Confidence 5699999997 999999999999999 6766651 234799999999999999999998876
Q ss_pred CCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCC
Q psy581 207 PTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286 (343)
Q Consensus 207 ~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~ 286 (343)
+ . .++.++|++|+.+++.|.+| +.+.+++++...+....+ +....|+++...+....++ .. ..+|+|||
T Consensus 136 ~-~-~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~-----~~~~~g~~~~~~l~~~~~~-~~-r~~y~CGp- 204 (266)
T COG1018 136 G-P-ADVVLVHAARTPADLAFRDE-LELAAELPNALLLGLYTE-----RGKLQGRIDVSRLLSAAPD-GG-REVYLCGP- 204 (266)
T ss_pred C-C-CCEEEEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEe-----cCCccccccHHHHhccCCC-CC-CEEEEECC-
Confidence 6 4 78999999999999999999 999999997666666654 1225678887666544332 22 89999999
Q ss_pred ccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 287 RKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
.+||+ +++..|.++|++.++|+.
T Consensus 205 --------------------------------~~fm~-av~~~l~~~g~~~~~vh~ 227 (266)
T COG1018 205 --------------------------------GPFMQ-AVRLALEALGVPDDRVHL 227 (266)
T ss_pred --------------------------------HHHHH-HHHHHHHHcCCChhcEEE
Confidence 66776 666666666777666653
No 21
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=4.7e-35 Score=266.65 Aligned_cols=232 Identities=25% Similarity=0.468 Sum_probs=194.6
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCc-cCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEH-VLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~-~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
++.++|++++.++++++.|+|+.+.... ...|+||||+.|.++..+....|+||+++.+.+ +.++|+|+.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~-~~l~~~i~~~------- 72 (241)
T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGD-DELRITVKRV------- 72 (241)
T ss_pred CceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCC-CcEEEEEEEc-------
Confidence 4678999999999999999999876432 257999999999998667678899999998765 4899999986
Q ss_pred CCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
.+|.+|.||. ++++|+++.|.||+| .|.+.+.+ ..++++|||+||||||++++++++....
T Consensus 73 --~~G~~s~~l~~~~~~G~~v~i~gP~G--------~~~~~~~~--------~~~~~llia~GtGiap~~~~~~~~~~~~ 134 (241)
T cd06214 73 --PGGRFSNWANDELKAGDTLEVMPPAG--------RFTLPPLP--------GARHYVLFAAGSGITPVLSILKTALARE 134 (241)
T ss_pred --CCCccchhHHhccCCCCEEEEeCCcc--------ccccCCCC--------CCCcEEEEecccChhhHHHHHHHHHhcC
Confidence 6799999996 899999999999999 55554400 2578999999999999999999988764
Q ss_pred CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcC---CCCCCcEEEEeC
Q psy581 208 TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLF---PPSPDNLVLMCG 284 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---~~~~~~~i~vCG 284 (343)
...+++++|++|+.+++++.+++.++.+.+++++++..++++++..|.+..|++.++.+.+.+. ....+..+|+||
T Consensus 135 -~~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icG 213 (241)
T cd06214 135 -PASRVTLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCG 213 (241)
T ss_pred -CCCcEEEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhcccccCcEEEEEC
Confidence 3578999999999999999999999998888779988888876666666789998766654432 123468999999
Q ss_pred CCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 285 PPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 285 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
| +.|++ .+..+|++.|++.++|+.
T Consensus 214 p---------------------------------~~mv~-~v~~~l~~~G~~~~~i~~ 237 (241)
T cd06214 214 P---------------------------------EPMMD-AVEAALLELGVPAERIHR 237 (241)
T ss_pred C---------------------------------HHHHH-HHHHHHHHcCCCHHHeec
Confidence 9 99999 888999999999999975
No 22
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=3e-35 Score=268.17 Aligned_cols=224 Identities=22% Similarity=0.332 Sum_probs=185.6
Q ss_pred EEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-CeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 54 KLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 54 ~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
+|++++.+++++++|+|+.+. ...|+||||+.|+++.+ +....|+|||++.+.+ +.++|+|+.+ ++
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~---------~~ 67 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDI---PFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILV---------PD 67 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCC---CCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEe---------cC
Confidence 478999999999999998765 37799999999999876 6778899999998866 8899999986 78
Q ss_pred CccchhhhcCCCCCeEEEe-cCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~~l~~G~~V~v~-GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|+||+++++|++|.+. ||+| .|.++.. ...++++||||||||||++++++++.... ...
T Consensus 68 G~~s~~l~~l~~Gd~v~v~~gP~G--------~f~~~~~--------~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~ 130 (241)
T cd06195 68 GPLTPRLFKLKPGDTIYVGKKPTG--------FLTLDEV--------PPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFD 130 (241)
T ss_pred CCCchHHhcCCCCCEEEECcCCCC--------ceeecCC--------CCCceEEEEeeccchhhHHHHHHHHHhhC-CCC
Confidence 9999999999999999999 9999 6665540 02578999999999999999999987543 457
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHH----HhhcCC--CCCCcEEEEeCC
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMI----AEHLFP--PSPDNLVLMCGP 285 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l----~~~~~~--~~~~~~i~vCGp 285 (343)
+++++|++|+.+++++.++|.++.++++.+|+++++++++.+.| +..|+++.... .+.+.. ......+|+|||
T Consensus 131 ~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp 209 (241)
T cd06195 131 KIVLVHGVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGN 209 (241)
T ss_pred cEEEEEccCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCC
Confidence 89999999999999999999999887443699998888776655 45677765322 222211 124678999999
Q ss_pred CccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCC------CceEe
Q psy581 286 PRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSE------KLRFS 342 (343)
Q Consensus 286 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~------~~i~~ 342 (343)
++|++ .+...|+++|+++ .+|+.
T Consensus 210 ---------------------------------~~m~~-~~~~~l~~~G~~~~~~~~~~~~~~ 238 (241)
T cd06195 210 ---------------------------------PQMID-DTQELLKEKGFSKNHRRKPGNITV 238 (241)
T ss_pred ---------------------------------HHHHH-HHHHHHHHcCCCccccCCCceEEE
Confidence 99999 8899999999999 88874
No 23
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=100.00 E-value=4.7e-35 Score=285.85 Aligned_cols=230 Identities=25% Similarity=0.399 Sum_probs=192.2
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCee--eeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~--~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
..+++++|++++.++++++.|+|++++......|+||||+.|.++.++.. ..|+|||++.|.+ +.++|+||.+
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~~-~~l~~~Vk~~---- 226 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPNG-KYYRISVKRE---- 226 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCCC-CeEEEEEEEC----
Confidence 56788999999999999999999987654446899999999999766533 3599999998764 6899999986
Q ss_pred CCCCCCCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 126 HPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
++|.+|.||++ +++||+|.|+||+| .|.++. ...++++||||||||||++++++++.
T Consensus 227 -----~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~l~~---------~~~~~~vlIagGtGIaP~~s~l~~~~ 284 (399)
T PRK13289 227 -----AGGKVSNYLHDHVNVGDVLELAAPAG--------DFFLDV---------ASDTPVVLISGGVGITPMLSMLETLA 284 (399)
T ss_pred -----CCCeehHHHhhcCCCCCEEEEEcCcc--------ccccCC---------CCCCcEEEEecCccHHHHHHHHHHHH
Confidence 67999999975 99999999999999 666553 12578999999999999999999987
Q ss_pred hCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCC-CC----cccccccCHHHHHhhcCCCCCCcE
Q psy581 205 KDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPED-GW----KYSTGFVSAEMIAEHLFPPSPDNL 279 (343)
Q Consensus 205 ~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~-~~----~~~~g~~~~~~l~~~~~~~~~~~~ 279 (343)
... ...+++++|++|+.++++|.++|+++.+++++ ++++.+++++.. ++ ....|+++.+.+.+.+.. .+..
T Consensus 285 ~~~-~~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~--~~~~ 360 (399)
T PRK13289 285 AQQ-PKRPVHFIHAARNGGVHAFRDEVEALAARHPN-LKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPD--PDAD 360 (399)
T ss_pred hcC-CCCCEEEEEEeCChhhchHHHHHHHHHHhCCC-cEEEEEECCCccccccCCcccccCcccHHHHHhhCCC--CCCE
Confidence 654 45799999999999999999999999998884 999888886543 11 123589988777666532 3678
Q ss_pred EEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 280 VLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 280 i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
+|+||| ++|++ ++...|.+.|++.++|++
T Consensus 361 vyiCGp---------------------------------~~m~~-~v~~~L~~~Gv~~~~I~~ 389 (399)
T PRK13289 361 FYFCGP---------------------------------VPFMQ-FVAKQLLELGVPEERIHY 389 (399)
T ss_pred EEEECC---------------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 999999 99999 888999999999999985
No 24
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=4.8e-35 Score=279.92 Aligned_cols=228 Identities=22% Similarity=0.415 Sum_probs=192.3
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCC
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH 126 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~ 126 (343)
|...++++|++++.++++++.|+|+.+.. ....|+||||+.|.++. + ..|+|||++.+.+.+.++|+||.+
T Consensus 99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~-~~~~~~pGQfv~l~~~~-~--~~R~ySias~p~~~~~l~~~ik~~----- 169 (339)
T PRK07609 99 PVKKLPCRVASLERVAGDVMRLKLRLPAT-ERLQYLAGQYIEFILKD-G--KRRSYSIANAPHSGGPLELHIRHM----- 169 (339)
T ss_pred cceEEEEEEEEEEcCCCcEEEEEEEcCCC-CCCccCCCCeEEEECCC-C--ceeeeecCCCCCCCCEEEEEEEec-----
Confidence 45677899999999999999999998753 24789999999999863 3 479999999987778999999986
Q ss_pred CCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 127 PKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 127 ~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
++|.+|+||+ ++++|++|.++||+| .|.++. ...++++||||||||||+++|++++..
T Consensus 170 ----~~G~~s~~l~~~l~~G~~v~v~gP~G--------~~~~~~---------~~~~~ivlIagGtGiaP~~s~l~~~~~ 228 (339)
T PRK07609 170 ----PGGVFTDHVFGALKERDILRIEGPLG--------TFFLRE---------DSDKPIVLLASGTGFAPIKSIVEHLRA 228 (339)
T ss_pred ----CCCccHHHHHHhccCCCEEEEEcCce--------eEEecC---------CCCCCEEEEecCcChhHHHHHHHHHHh
Confidence 7899999995 799999999999999 565543 135789999999999999999999987
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC--CCCCcccccccCHHHHHhhcCCCCCCcEEEEe
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP--EDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMC 283 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vC 283 (343)
.. ...+++|+|++|+.+++++.+++++|.+++++ |+++.+++++ ++.|.+..|++++..++.. .. ..+..+|+|
T Consensus 229 ~~-~~~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~-~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~-~~-~~~~~vy~C 304 (339)
T PRK07609 229 KG-IQRPVTLYWGARRPEDLYLSALAEQWAEELPN-FRYVPVVSDALDDDAWTGRTGFVHQAVLEDF-PD-LSGHQVYAC 304 (339)
T ss_pred cC-CCCcEEEEEecCChHHhccHHHHHHHHHhCCC-eEEEEEecCCCCCCCccCccCcHHHHHHhhc-cc-ccCCEEEEE
Confidence 54 45689999999999999999999999988885 9998888863 4567777899887554443 22 245789999
Q ss_pred CCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 284 GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 284 Gp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
|| ++|++ ++...|.++|++.++||+
T Consensus 305 Gp---------------------------------~~m~~-~~~~~l~~~G~~~~~i~~ 329 (339)
T PRK07609 305 GS---------------------------------PVMVY-AARDDFVAAGLPAEEFFA 329 (339)
T ss_pred CC---------------------------------HHHHH-HHHHHHHHcCCCHHHeEE
Confidence 99 99999 888999999999999985
No 25
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=7.5e-35 Score=264.02 Aligned_cols=224 Identities=25% Similarity=0.548 Sum_probs=187.9
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD 131 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~ 131 (343)
+++|++++.+++++++++|+.+... ...|+||||+.|.++..+ ..|+|||++.+.+.+.++|+||.+ +
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~l~l~vk~~---------~ 69 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE-PIKFFAGQYVDITVPGTE--ETRSFSMANTPADPGRLEFIIKKY---------P 69 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC-cCCcCCCCeEEEEcCCCC--cccccccCCCCCCCCEEEEEEEEC---------C
Confidence 5789999999999999999976643 367999999999987443 689999999987778999999986 6
Q ss_pred CCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCC
Q psy581 132 GGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDN 210 (343)
Q Consensus 132 ~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~ 210 (343)
+|.+|.||++ +++|++|.+.||+| .|.+.. ...++++|||||+||||++++++++...+ ..
T Consensus 70 ~G~~s~~l~~~l~~G~~v~i~gP~G--------~~~~~~---------~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~ 131 (232)
T cd06212 70 GGLFSSFLDDGLAVGDPVTVTGPYG--------TCTLRE---------SRDRPIVLIGGGSGMAPLLSLLRDMAASG-SD 131 (232)
T ss_pred CCchhhHHhhcCCCCCEEEEEcCcc--------cceecC---------CCCCcEEEEecCcchhHHHHHHHHHHhcC-CC
Confidence 7999999975 99999999999999 555443 12578999999999999999999998765 45
Q ss_pred ccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCC--CCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 211 TKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 211 ~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
.+++++|++|+.+++++.++|.++.+.++ +++++.+++++. +.|.+..|++++ .+.+.+.. ..+..+|+|||
T Consensus 132 ~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~~~v~~CGp--- 205 (232)
T cd06212 132 RPVRFFYGARTARDLFYLEEIAALGEKIP-DFTFIPALSESPDDEGWSGETGLVTE-VVQRNEAT-LAGCDVYLCGP--- 205 (232)
T ss_pred CcEEEEEeccchHHhccHHHHHHHHHhCC-CEEEEEEECCCCCCCCCcCCcccHHH-HHHhhccC-ccCCEEEEECC---
Confidence 68999999999999999999999998877 498888887653 446666788865 45544433 24578999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++...|+++|++.++|+.
T Consensus 206 ------------------------------~~~~~-~v~~~l~~~G~~~~~i~~ 228 (232)
T cd06212 206 ------------------------------PPMID-AALPVLEMSGVPPDQIFY 228 (232)
T ss_pred ------------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999985
No 26
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=5.8e-35 Score=265.05 Aligned_cols=223 Identities=20% Similarity=0.308 Sum_probs=186.1
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~ 129 (343)
.++++|++++.++++++.|+|+.++. ..|+||||+.|.++.. ..|+|||++.+.+.+.++|+|+..
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~---~~r~ySias~p~~~~~l~~~v~~~-------- 67 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAP---FSFRAGQYLMVVMGEK---DKRPFSIASTPREKGFIELHIGAS-------- 67 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCC---CccCCCCEEEEEcCCC---cceeecccCCCCCCCcEEEEEEEc--------
Confidence 56899999999999999999987543 6899999999998643 469999999987668899999975
Q ss_pred CCCCccchhh-hcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC
Q psy581 130 PDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 208 (343)
Q Consensus 130 ~~~G~~S~~L-~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~ 208 (343)
..|..+.++ .++++|++|.|.||+| .|.+.. ...++++|||||+||||++++++++...+
T Consensus 68 -~~~~~~~~~~~~l~~G~~v~v~gP~G--------~~~~~~---------~~~~~~vliagG~GiaP~~~~l~~~~~~~- 128 (232)
T PRK08051 68 -ELNLYAMAVMERILKDGEIEVDIPHG--------DAWLRE---------ESERPLLLIAGGTGFSYARSILLTALAQG- 128 (232)
T ss_pred -CCCcchHHHHHHcCCCCEEEEEcCCC--------ceEccC---------CCCCcEEEEecCcCcchHHHHHHHHHHhC-
Confidence 456666666 7899999999999999 454433 12478999999999999999999998764
Q ss_pred CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 209 DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 209 ~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
...+++++|++|+.++++|.++|.++++++++ ++++.+++++++.|.+..|++.+..++.. .. ..+..+|+|||
T Consensus 129 ~~~~v~l~~g~r~~~~~~~~~el~~l~~~~~~-~~~~~~~~~~~~~~~~~~g~v~~~l~~~~-~~-~~~~~vyicGp--- 202 (232)
T PRK08051 129 PNRPITLYWGGREEDHLYDLDELEALALKHPN-LHFVPVVEQPEEGWQGKTGTVLTAVMQDF-GS-LAEYDIYIAGR--- 202 (232)
T ss_pred CCCcEEEEEEeccHHHhhhhHHHHHHHHHCCC-cEEEEEeCCCCCCcccceeeehHHHHhhc-cC-cccCEEEEECC---
Confidence 45789999999999999999999999998874 99998888877777777888887544333 22 24568999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhH-hhCCCCCCceEe
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNL-DKLGYSEKLRFS 342 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~g~~~~~i~~ 342 (343)
++|++ ++.+.| .+.|++++||+.
T Consensus 203 ------------------------------~~m~~-~v~~~l~~~~G~~~~~i~~ 226 (232)
T PRK08051 203 ------------------------------FEMAK-IARELFCRERGAREEHLFG 226 (232)
T ss_pred ------------------------------HHHHH-HHHHHHHHHcCCCHHHeec
Confidence 99999 888999 999999999975
No 27
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=5.3e-35 Score=262.46 Aligned_cols=220 Identities=30% Similarity=0.554 Sum_probs=183.9
Q ss_pred EEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccc
Q psy581 57 EKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMS 136 (343)
Q Consensus 57 ~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S 136 (343)
.++.++++++.++|+.++ ...|+||||+.|.++.++....|+|||++.+.+.+.++|+||.+ ++|.+|
T Consensus 2 ~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~---------~~G~~s 69 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPN---GFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV---------PGGPFS 69 (223)
T ss_pred ceEEecCCeEEEEEecCC---CCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEe---------CCCchh
Confidence 467889999999999876 47899999999999876677899999999987778999999986 679999
Q ss_pred hhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEE
Q psy581 137 QFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLI 216 (343)
Q Consensus 137 ~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li 216 (343)
+||+++++|++|.|+||+| .|.+.. ...++++||||||||||++++++++.... ...+++++
T Consensus 70 ~~l~~~~~G~~v~i~gP~G--------~~~~~~---------~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~ 131 (223)
T cd00322 70 AWLHDLKPGDEVEVSGPGG--------DFFLPL---------EESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLL 131 (223)
T ss_pred hHHhcCCCCCEEEEECCCc--------ccccCc---------ccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEE
Confidence 9999999999999999999 443222 13678999999999999999999998764 45789999
Q ss_pred EecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCH-HHHHhhcCCCCCCcEEEEeCCCccccccccC
Q psy581 217 FANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA-EMIAEHLFPPSPDNLVLMCGPPRKTVKNNLK 295 (343)
Q Consensus 217 ~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~ 295 (343)
|++|+.+++++.++|+++.+.++ ++++++++++....+.+..+++.. ..+..... ...+..+|+|||
T Consensus 132 ~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~yvCGp---------- 199 (223)
T cd00322 132 YGARTPADLLFLDELEELAKEGP-NFRLVLALSRESEAKLGPGGRIDREAEILALLP-DDSGALVYICGP---------- 199 (223)
T ss_pred EecCCHHHhhHHHHHHHHHHhCC-CeEEEEEecCCCCCCCcccceeeHHHHHHhhcc-cccCCEEEEECC----------
Confidence 99999999999999999998776 499999988877666555555542 22333222 345789999999
Q ss_pred CCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 296 PEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ .++..|.++|+++++|+.
T Consensus 200 -----------------------~~m~~-~~~~~L~~~gv~~~~i~~ 222 (223)
T cd00322 200 -----------------------PAMAK-AVREALVSLGVPEERIHT 222 (223)
T ss_pred -----------------------HHHHH-HHHHHHHHcCCCHHHccc
Confidence 99999 889999999999999874
No 28
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.2e-34 Score=271.26 Aligned_cols=229 Identities=20% Similarity=0.392 Sum_probs=182.3
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEECCCC--CccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEee
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSA--EHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 123 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~--~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~ 123 (343)
+|..+++++|++++++++++..++|+...+ .....|+||||+.|.++..+ .|+||+++.+.+.+.++|+||.
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~--- 74 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRR--- 74 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEe---
Confidence 577889999999999999977777765332 33467999999999987544 3799999998777899999995
Q ss_pred cCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 124 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 124 ~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
.|.+|+||+++++|++|.|+||+|. .|.++. ...++++||||||||||+++|++++
T Consensus 75 --------~G~~S~~L~~l~~Gd~v~v~gP~G~-------~f~~~~---------~~~~~~llIAgGtGIaP~~s~l~~~ 130 (289)
T PRK08345 75 --------AGRVTTVIHRLKEGDIVGVRGPYGN-------GFPVDE---------MEGMDLLLIAGGLGMAPLRSVLLYA 130 (289)
T ss_pred --------CChHHHHHHhCCCCCEEEEeCCCCC-------CCCccc---------ccCceEEEEecccchhHHHHHHHHH
Confidence 5899999999999999999999994 254432 1246899999999999999999998
Q ss_pred HhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcc------------cccccCHHHHHhhc
Q psy581 204 TKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKY------------STGFVSAEMIAEHL 271 (343)
Q Consensus 204 ~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~~~l~~~~ 271 (343)
+.......+++++|++|+.++++|.+||++|+++++ +|+++.++++++ .|.. ..|++.+ .+.+..
T Consensus 131 l~~~~~~~~v~l~~~~r~~~d~~~~deL~~l~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~-~~~~~~ 207 (289)
T PRK08345 131 MDNRWKYGNITLIYGAKYYEDLLFYDELIKDLAEAE-NVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTD-LFREAN 207 (289)
T ss_pred HhcCCCCCcEEEEEecCCHHHhhHHHHHHHHHhcCC-CEEEEEEecCCC-CCcCccccccccccccccCchhh-hhhhcC
Confidence 765423478999999999999999999999988777 499988888643 2211 2355544 233322
Q ss_pred CCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 272 FPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 272 ~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
. +..+..+|+||| ++|++ ++.+.|.++|+++++||.
T Consensus 208 ~-~~~~~~vyiCGP---------------------------------~~m~~-~v~~~L~~~Gv~~~~i~~ 243 (289)
T PRK08345 208 T-DPKNTYAAICGP---------------------------------PVMYK-FVFKELINRGYRPERIYV 243 (289)
T ss_pred C-CccccEEEEECC---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 2 234578999999 99999 888999999999999985
No 29
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.6e-34 Score=259.39 Aligned_cols=214 Identities=27% Similarity=0.467 Sum_probs=178.7
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC-eeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g-~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
+++|++++.++++++.|+|+.++. ..|+||||+.|.++.++ ....|+|||++.+.+ +.++|+||.+
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~--------- 68 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG---YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSY--------- 68 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc---CCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEc---------
Confidence 578999999999999999998764 67999999999987654 357899999998865 8999999986
Q ss_pred C-CCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC
Q psy581 131 D-GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 209 (343)
Q Consensus 131 ~-~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~ 209 (343)
+ +|.+|++|+++++|++|.++||+| .|.+ .++++||||||||||++++++++...+ .
T Consensus 69 ~~~g~~s~~l~~l~~G~~v~i~gP~G--------~~~~-------------~~~~vlia~GtGiaP~~s~l~~~~~~~-~ 126 (218)
T cd06196 69 PDHDGVTEQLGRLQPGDTLLIEDPWG--------AIEY-------------KGPGVFIAGGAGITPFIAILRDLAAKG-K 126 (218)
T ss_pred CCCCcHhHHHHhCCCCCEEEEECCcc--------ceEe-------------cCceEEEecCCCcChHHHHHHHHHhCC-C
Confidence 4 378999999999999999999999 4432 246899999999999999999998754 4
Q ss_pred CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccc
Q psy581 210 NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKT 289 (343)
Q Consensus 210 ~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~ 289 (343)
..+++|+|++|+.+++++.++|++|. ++++..+++++... .+..|+++++.+++.+.. ....+|+|||
T Consensus 127 ~~~v~l~~~~r~~~~~~~~~el~~l~-----~~~~~~~~s~~~~~-~~~~g~~~~~~l~~~~~~--~~~~vyiCGp---- 194 (218)
T cd06196 127 LEGNTLIFANKTEKDIILKDELEKML-----GLKFINVVTDEKDP-GYAHGRIDKAFLKQHVTD--FNQHFYVCGP---- 194 (218)
T ss_pred CceEEEEEecCCHHHHhhHHHHHHhh-----cceEEEEEcCCCCC-CeeeeEECHHHHHHhcCC--CCCEEEEECC----
Confidence 56899999999999999999999984 25666666654322 336799988777766432 3468999999
Q ss_pred cccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 290 VKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++..+|.++|+++++|++
T Consensus 195 -----------------------------~~m~~-~~~~~l~~~G~~~~~i~~ 217 (218)
T cd06196 195 -----------------------------PPMEE-AINGALKELGVPEDSIVF 217 (218)
T ss_pred -----------------------------HHHHH-HHHHHHHHcCCCHHHEec
Confidence 99999 888999999999999975
No 30
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=1.6e-34 Score=260.29 Aligned_cols=220 Identities=26% Similarity=0.435 Sum_probs=184.9
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCc
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK 134 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~ 134 (343)
|+++++++++++.++|+.++. ..|+||||+.|.++..+ ...|+|||++.+.+.+.++|+||.+ .+|.
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~---~~~~pGq~i~l~~~~~~-~~~r~ysi~s~~~~~~~~~~~i~~~---------~~G~ 67 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP---LPFWAGQYVNVTVPGRP-RTWRAYSPANPPNEDGEIEFHVRAV---------PGGR 67 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC---CCcCCCceEEEEcCCCC-CcceeccccCCCCCCCEEEEEEEeC---------CCCc
Confidence 578899999999999998765 67999999999987433 3679999999988778999999985 5799
Q ss_pred cchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 135 MSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 135 ~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
+|+||++ +++|++|.|+||+| .|.+.. ...++++|||||+||||++++++++.... ...++
T Consensus 68 ~s~~l~~~l~~G~~v~i~gP~G--------~~~~~~---------~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v 129 (224)
T cd06187 68 VSNALHDELKVGDRVRLSGPYG--------TFYLRR---------DHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPV 129 (224)
T ss_pred chHHHhhcCccCCEEEEeCCcc--------ceEecC---------CCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCE
Confidence 9999976 99999999999999 555544 12578999999999999999999998754 45789
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+++|++|+.+++++.++|.++..++++ ++++++.+++...|.+..|++.+. +.+... +..+..+|+|||
T Consensus 130 ~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~~~~~v~vcGp-------- 198 (224)
T cd06187 130 HLFFGARTERDLYDLEGLLALAARHPW-LRVVPVVSHEEGAWTGRRGLVTDV-VGRDGP-DWADHDIYICGP-------- 198 (224)
T ss_pred EEEEecCChhhhcChHHHHHHHHhCCC-eEEEEEeCCCCCccCCCcccHHHH-HHHhcc-ccccCEEEEECC--------
Confidence 999999999999999999999988875 888888877655566677888764 443332 235688999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ .+.+.|+++|+++++|++
T Consensus 199 -------------------------~~~~~-~v~~~l~~~G~~~~~i~~ 221 (224)
T cd06187 199 -------------------------PAMVD-ATVDALLARGAPPERIHF 221 (224)
T ss_pred -------------------------HHHHH-HHHHHHHHcCCCHHHeec
Confidence 99999 888999999999999985
No 31
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=6.9e-34 Score=260.49 Aligned_cols=225 Identities=20% Similarity=0.253 Sum_probs=179.6
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
.|++++|+++++++++++.|+|+.+. ..|+||||+.|.++.++....|+|||++.+.+ +.++|+||.+
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~------- 70 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV----DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTV------- 70 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC----CCCCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEe-------
Confidence 58899999999999999999998652 36899999999997667667899999998865 5899999987
Q ss_pred CCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC
Q psy581 129 FPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 208 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~ 208 (343)
++|.+|+||+++++||+|.|+||.+. .|.++. . ...++++||||||||||+++|++++....
T Consensus 71 --~~G~~S~~L~~l~~Gd~v~i~gp~~g-------~f~l~~-~-------~~~~~~vlIagGtGItP~~s~l~~~~~~~- 132 (248)
T PRK10926 71 --PEGKLSPRLAALKPGDEVQVVSEAAG-------FFVLDE-V-------PDCETLWMLATGTAIGPYLSILQEGKDLE- 132 (248)
T ss_pred --CCCCcChHHHhCCCCCEEEEecCCCc-------ceEccC-C-------CCCCeEEEEEeeeeHHHHHHHHHhhHhhC-
Confidence 78999999999999999999998742 555543 0 02378999999999999999999986543
Q ss_pred CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHH----HHhhcC--CCCCCcEEEE
Q psy581 209 DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM----IAEHLF--PPSPDNLVLM 282 (343)
Q Consensus 209 ~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----l~~~~~--~~~~~~~i~v 282 (343)
...+++++|++|+.++++|.++|++|+++++.+++++.+++++.. +.+..|++++.. +.+.+. ...++..+|+
T Consensus 133 ~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~ 211 (248)
T PRK10926 133 RFKNLVLVHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVML 211 (248)
T ss_pred CCCcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEE
Confidence 356899999999999999999999999988756999988887432 333568876421 111111 1134678999
Q ss_pred eCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh-CCCCCC
Q psy581 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK-LGYSEK 338 (343)
Q Consensus 283 CGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~g~~~~ 338 (343)
||| ++|++ ++...|.+ .|+++.
T Consensus 212 CGp---------------------------------~~Mv~-~~~~~l~~~~~~~~~ 234 (248)
T PRK10926 212 CGN---------------------------------PQMVR-DTQQLLKETRQMTKH 234 (248)
T ss_pred ECC---------------------------------HHHHH-HHHHHHHHhcCcccc
Confidence 999 99999 77788854 677654
No 32
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=2.4e-34 Score=281.39 Aligned_cols=242 Identities=26% Similarity=0.405 Sum_probs=194.5
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-----------------------------Cee
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-----------------------------DEF 97 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-----------------------------g~~ 97 (343)
+...++++|++++.++++++.|+|+.++.. ...|+||||+.|+++.. +..
T Consensus 130 ~~~~~~~~V~~~~~ls~~i~~l~l~~~~~~-~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (409)
T PRK05464 130 GVKKWECTVISNDNVATFIKELVLKIPEGE-EVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEP 208 (409)
T ss_pred cceEEEEEEEEcccCCchhheEEEecCCCC-cccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCc
Confidence 445568999999999999999999987532 25799999999998631 235
Q ss_pred eeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCC
Q psy581 98 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 177 (343)
Q Consensus 98 ~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~ 177 (343)
..|+|||++.|.+.+.++|+||.+.+....+..++|.+|.||+++++||+|.|+||+| .|.+..
T Consensus 209 ~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G--------~f~~~~-------- 272 (409)
T PRK05464 209 VIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGPFG--------EFFAKD-------- 272 (409)
T ss_pred eeeeeccCCCCCCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEcccc--------CcEecC--------
Confidence 6799999999887789999999742221111225799999999999999999999999 554443
Q ss_pred CCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC--CCCC
Q psy581 178 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP--EDGW 255 (343)
Q Consensus 178 ~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~ 255 (343)
..++++||||||||||+++++++++.......+++++|++|+.++++|.++|+++..++++ ++++++++++ .+.|
T Consensus 273 --~~~~ivlIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~ 349 (409)
T PRK05464 273 --TDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPN-FKWHVALSDPLPEDNW 349 (409)
T ss_pred --CCceEEEEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCC-eEEEEEEcCCCCCCCC
Confidence 2578999999999999999999877653234689999999999999999999999998885 9988888754 3456
Q ss_pred cccccccCHHHHHhhcC--CCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhC
Q psy581 256 KYSTGFVSAEMIAEHLF--PPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKL 333 (343)
Q Consensus 256 ~~~~g~~~~~~l~~~~~--~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 333 (343)
.+..|+++.....+.+. ....+..+|+||| ++|++ ++...|+++
T Consensus 350 ~g~~G~v~~~l~~~~l~~~~~~~~~~vyiCGP---------------------------------~~m~~-av~~~L~~~ 395 (409)
T PRK05464 350 TGYTGFIHNVLYENYLKDHEAPEDCEYYMCGP---------------------------------PMMNA-AVIKMLKDL 395 (409)
T ss_pred CCccceeCHHHHHhhhhhcCCCCCeEEEEECC---------------------------------HHHHH-HHHHHHHHc
Confidence 66789998755444332 1234578999999 99999 888999999
Q ss_pred CCCCCceEe
Q psy581 334 GYSEKLRFS 342 (343)
Q Consensus 334 g~~~~~i~~ 342 (343)
|++.++|+.
T Consensus 396 Gv~~~~I~~ 404 (409)
T PRK05464 396 GVEDENILL 404 (409)
T ss_pred CCCHHHEEE
Confidence 999999985
No 33
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=3.2e-34 Score=310.85 Aligned_cols=251 Identities=29% Similarity=0.562 Sum_probs=214.3
Q ss_pred cccccccCCCceEeEEEEEEE---EeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEE
Q psy581 39 KELKTLVDPDVKVPLKLKEKI---EINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 115 (343)
Q Consensus 39 ~~~~~~~~p~~~~~~~v~~~~---~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~ 115 (343)
+..+..+++..|++++|++++ +.+++++.++|+++.....+.|.||||+.|.++.++....|+|||++.|.+.+.++
T Consensus 903 ~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~ 982 (1167)
T PTZ00306 903 QKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVIS 982 (1167)
T ss_pred hccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEE
Confidence 344678999999999999998 56999999999998765557899999999998777777889999999998778999
Q ss_pred EEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceee--cCCCceeeccCCCCCCCCCCCcceEEEEEcCcch
Q psy581 116 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY--LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGI 193 (343)
Q Consensus 116 ~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~--~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGI 193 (343)
|+||. ++|.+|+||+++++||+|+|+||+|.+.+ +..+.|.++. ...++++||||||||
T Consensus 983 l~Vr~----------~~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~---------~~~~~ivlIAGGtGI 1043 (1167)
T PTZ00306 983 ILARG----------DKGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRG---------HVIRKLALIAGGTGV 1043 (1167)
T ss_pred EEEEc----------CCChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeecc---------CCCceEEEEECCccH
Confidence 99985 57999999999999999999999884322 1233465544 135789999999999
Q ss_pred HhHHHHHHHHHhCC--CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhc
Q psy581 194 TPMLQLVRHITKDP--TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHL 271 (343)
Q Consensus 194 ap~~sll~~~~~~~--~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 271 (343)
||+++|+++++.++ ....+++|+|++|+.++++|+++|++|.++++++|+++++++++.++|....|+++...+++.+
T Consensus 1044 tP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~~l 1123 (1167)
T PTZ00306 1044 APMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQSAL 1123 (1167)
T ss_pred hHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHHhc
Confidence 99999999988754 1246899999999999999999999999999888999999998777787788999987788776
Q ss_pred CCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 272 FPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 272 ~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
+.+..+..+|+||| ++|++ ++...|+++|+++++|++
T Consensus 1124 ~~~~~~~~vyiCGP---------------------------------~~mv~-~v~~~L~~~G~~~~~I~~ 1160 (1167)
T PTZ00306 1124 QPPSKDLLVAICGP---------------------------------PVMQR-AVKADLLALGYNMELVRT 1160 (1167)
T ss_pred CCCCCCeEEEEeCC---------------------------------HHHHH-HHHHHHHHcCCCHHHeEE
Confidence 65556678999999 99999 889999999999999986
No 34
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=3.2e-34 Score=259.86 Aligned_cols=221 Identities=26% Similarity=0.418 Sum_probs=181.7
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCc
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK 134 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~ 134 (343)
|++++.++++++.|+|+.+.. ..|+||||+.|+++..+ ..|+|||++.+.+.+.++|+||.+ .+|.
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~--~~r~ySi~s~~~~~~~~~~~vk~~---------~~G~ 66 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP---ADFLPGQYALLALPGVE--GARAYSMANLANASGEWEFIIKRK---------PGGA 66 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc---cccCCCCEEEEECCCCC--cccCccCCcCCCCCCEEEEEEEEc---------CCCc
Confidence 467899999999999998754 57999999999987433 679999999887778999999986 6799
Q ss_pred cchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC-CCCcc
Q psy581 135 MSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTK 212 (343)
Q Consensus 135 ~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~-~~~~~ 212 (343)
+|+||++ +++|++|.|+||+| .+.+.. ...++++|||||+||||++++++++.... ....+
T Consensus 67 ~s~~l~~~~~~g~~v~v~gP~G--------~~~~~~---------~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~ 129 (232)
T cd06190 67 ASNALFDNLEPGDELELDGPYG--------LAYLRP---------DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRP 129 (232)
T ss_pred chHHHhhcCCCCCEEEEECCcc--------cceecC---------CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCe
Confidence 9999975 79999999999999 444432 12478999999999999999999998652 13578
Q ss_pred EEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCC----CCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 213 MSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPED----GWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 213 v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
++++|++|+.+++++.++|.++.+.++ +++++++++++.. .|.+..|++++ .+.+.+.....+..+|+|||
T Consensus 130 v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGp--- 204 (232)
T cd06190 130 VDLFYGGRTPSDLCALDELSALVALGA-RLRVTPAVSDAGSGSAAGWDGPTGFVHE-VVEATLGDRLAEFEFYFAGP--- 204 (232)
T ss_pred EEEEEeecCHHHHhhHHHHHHHHHhCC-CEEEEEEeCCCCCCcCCCccCCcCcHHH-HHHhhccCCccccEEEEECC---
Confidence 999999999999999999999998766 5998888876543 36667788875 56665544345689999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCC-CCCceEe
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGY-SEKLRFS 342 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~-~~~~i~~ 342 (343)
++|++ .+...|.+.|+ ++++|++
T Consensus 205 ------------------------------~~m~~-~v~~~l~~~g~~~~~~i~~ 228 (232)
T cd06190 205 ------------------------------PPMVD-AVQRMLMIEGVVPFDQIHF 228 (232)
T ss_pred ------------------------------HHHHH-HHHHHHHHhCCCChHheee
Confidence 99999 88889988875 4888875
No 35
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=7.8e-34 Score=255.63 Aligned_cols=217 Identities=23% Similarity=0.369 Sum_probs=174.9
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCc
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK 134 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~ 134 (343)
|++++.++++++.++|+.++. ..|+||||+.|+++. ...|+|||++.+.+.+.++|+||.+ .+|.
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~---~~~~pGQ~v~l~~~~---~~~r~ySi~s~~~~~~~~~~~i~~~---------~~G~ 65 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP---LPYLPGQYVNLRRAG---GLARSYSPTSLPDGDNELEFHIRRK---------PNGA 65 (222)
T ss_pred CceeeecCCCEEEEEEecCCC---CCcCCCCEEEEEcCC---CCceeeecCCCCCCCCEEEEEEEec---------cCCc
Confidence 568899999999999998653 679999999999863 2469999999987768899999986 6799
Q ss_pred cchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 135 MSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 135 ~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
+|+||++ +++|+.|.|.||+|. +.+.. ....++++|||||+||||++++++++.... ...++
T Consensus 66 ~s~~l~~~~~~G~~v~i~gP~G~--------~~~~~--------~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v 128 (222)
T cd06194 66 FSGWLGEEARPGHALRLQGPFGQ--------AFYRP--------EYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEI 128 (222)
T ss_pred cchHHHhccCCCCEEEEecCcCC--------eeccC--------CCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccE
Confidence 9999976 799999999999994 43321 013578999999999999999999987654 45789
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+++|++|+.+++++.++|++|++++++ ++++.+++++...+.. ++... +.+.+........+|+|||
T Consensus 129 ~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~vyicGp-------- 195 (222)
T cd06194 129 RLVHGARDPDDLYLHPALLWLAREHPN-FRYIPCVSEGSQGDPR--VRAGR--IAAHLPPLTRDDVVYLCGA-------- 195 (222)
T ss_pred EEEEecCChhhccCHHHHHHHHHHCCC-eEEEEEEccCCCCCcc--cccch--hhhhhccccCCCEEEEeCC--------
Confidence 999999999999999999999988885 9988888775443211 11111 2222222335689999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ +++..|.++|+++++|+.
T Consensus 196 -------------------------~~m~~-~~~~~L~~~Gv~~~~i~~ 218 (222)
T cd06194 196 -------------------------PSMVN-AVRRRAFLAGAPMKRIYA 218 (222)
T ss_pred -------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999985
No 36
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=100.00 E-value=5.7e-34 Score=278.45 Aligned_cols=242 Identities=24% Similarity=0.403 Sum_probs=193.1
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-----------------------------Cee
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-----------------------------DEF 97 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-----------------------------g~~ 97 (343)
+...++++|++++.++++++.++|++++.. ...|+||||+.|+++.. +..
T Consensus 126 ~~~~~~~~v~~~~~~s~~i~~l~l~~~~~~-~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (405)
T TIGR01941 126 GVKKWECEVISNDNVATFIKELVLKLPDGE-SVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEE 204 (405)
T ss_pred ccceeeeEEEEcccccchhheEEEecCCCc-eeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCc
Confidence 445668999999999999999999987542 35799999999998632 224
Q ss_pred eeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCC
Q psy581 98 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 177 (343)
Q Consensus 98 ~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~ 177 (343)
..|+|||++.|.+.+.++|+||...+...-...++|.+|.||+++++||+|.|+||+| .|.+.+
T Consensus 205 ~~R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G--------~f~l~~-------- 268 (405)
T TIGR01941 205 TVRAYSMANYPAEKGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGPFG--------EFFAKD-------- 268 (405)
T ss_pred cceeecCCCCCCCCCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEeccC--------CCeecC--------
Confidence 6799999999988789999999742111100125799999999999999999999999 555543
Q ss_pred CCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC--CCCC
Q psy581 178 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP--EDGW 255 (343)
Q Consensus 178 ~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~ 255 (343)
..++++||||||||||+++|+++++.......+++++|++|+.++++|.++|+++.+++++ ++++++++++ .+.|
T Consensus 269 --~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~ 345 (405)
T TIGR01941 269 --TDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPN-FVWHVALSDPQPEDNW 345 (405)
T ss_pred --CCCCEEEEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCC-eEEEEEeCCCCccCCC
Confidence 2478999999999999999999876543235689999999999999999999999998885 9998888754 3457
Q ss_pred cccccccCHHHHHhhcC--CCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhC
Q psy581 256 KYSTGFVSAEMIAEHLF--PPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKL 333 (343)
Q Consensus 256 ~~~~g~~~~~~l~~~~~--~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 333 (343)
.+..|+++.....+.+. ....+..+|+||| ++|++ ++..+|.++
T Consensus 346 ~g~~G~v~~~l~~~~l~~~~~~~~~~vylCGP---------------------------------~~m~~-av~~~L~~~ 391 (405)
T TIGR01941 346 TGYTGFIHNVLYENYLKDHDAPEDCEFYMCGP---------------------------------PMMNA-AVIKMLEDL 391 (405)
T ss_pred CCccceeCHHHHHhhhcccCCCCCeEEEEeCC---------------------------------HHHHH-HHHHHHHHc
Confidence 77888988754433332 1224578999999 99999 888999999
Q ss_pred CCCCCceEe
Q psy581 334 GYSEKLRFS 342 (343)
Q Consensus 334 g~~~~~i~~ 342 (343)
|++.++|+.
T Consensus 392 Gv~~~~I~~ 400 (405)
T TIGR01941 392 GVERENILL 400 (405)
T ss_pred CCCHHHEEE
Confidence 999999985
No 37
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=1.2e-33 Score=259.61 Aligned_cols=220 Identities=26% Similarity=0.530 Sum_probs=182.5
Q ss_pred EEEEEEeCCCEEEEEEECCCCC-ccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCC
Q psy581 55 LKEKIEINHDTRCFRFELPSAE-HVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~-~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
|++++.+++++..++|+++.+. ....|+||||+.|.++..+ .|+||+++.+.+.+.++|+||. .|
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~-----------~G 66 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRR-----------VG 66 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEe-----------CC
Confidence 5688999999999999876643 2478999999999987555 3899999998767899999995 48
Q ss_pred ccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 134 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 134 ~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
.+|+||+++++|++|.++||+|. .|.++. ...+++||||+|+||||+++|++++.......+++
T Consensus 67 ~~S~~L~~l~~G~~v~i~gP~G~-------~f~~~~---------~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i 130 (253)
T cd06221 67 RVTEALHELKPGDTVGLRGPFGN-------GFPVEE---------MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKV 130 (253)
T ss_pred hhhHHHHcCCCCCEEEEECCcCC-------Cccccc---------ccCCeEEEEccccchhHHHHHHHHHHhccccCCcE
Confidence 89999999999999999999994 254432 12578999999999999999999998753234789
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+|+|++|+.+++++.++|+++..+ + +++++++++++.+.|.+..|++.+ .+.+.... ..+..+|+|||
T Consensus 131 ~Li~~~r~~~~~~~~~~L~~l~~~-~-~~~~~~~~s~~~~~~~~~~g~v~~-~l~~~~~~-~~~~~vyicGp-------- 198 (253)
T cd06221 131 TLLYGARTPEDLLFKEELKEWAKR-S-DVEVILTVDRAEEGWTGNVGLVTD-LLPELTLD-PDNTVAIVCGP-------- 198 (253)
T ss_pred EEEEecCChHHcchHHHHHHHHhc-C-CeEEEEEeCCCCCCccCCccccch-hHHhcCCC-cCCcEEEEECC--------
Confidence 999999999999999999999987 5 489988888777666667788876 44444322 25678999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++.++|.+.|+++++||.
T Consensus 199 -------------------------~~mv~-~~~~~L~~~Gv~~~~i~~ 221 (253)
T cd06221 199 -------------------------PIMMR-FVAKELLKLGVPEEQIWV 221 (253)
T ss_pred -------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 99999 888999999999999885
No 38
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=100.00 E-value=8.1e-33 Score=260.91 Aligned_cols=237 Identities=19% Similarity=0.218 Sum_probs=178.9
Q ss_pred ccccccccccccccccCCCceEeEEEEEEEEeC-----CCEEEEEEECCCCCccCCCCCCCEEEEEEee-----CCe-ee
Q psy581 30 KDKASRSSKKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGLPIGQHLSLSATI-----NDE-FV 98 (343)
Q Consensus 30 ~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~i~-----~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~-----~g~-~~ 98 (343)
|+....+.+.++..+..+...++++|++++.++ ++++.|+|+.+.. +.|.||||+.|.++. ++. ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~~f~aGQy~~l~~~~~~~~~~g~~~~ 80 (307)
T PLN03116 4 KPLELEDAKEPPLNLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGTNPKKPGAPHN 80 (307)
T ss_pred ccCChhhccCCceeeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---CceecCceEeeeCCCCChhhcCCcCC
Confidence 344445666777777778888999999999999 8999999997643 789999999998652 122 24
Q ss_pred eeeceeccCCCCC----CeEEEEEEEEeecCC---C-CCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccC
Q psy581 99 ARAYTPVTSDEHH----GYMDLVVKVYFKNVH---P-KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 170 (343)
Q Consensus 99 ~R~yTi~s~~~~~----~~l~~~Vk~~~~~~~---~-~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~ 170 (343)
.|+|||+|.|.+. ..++|+||+..+.+. . ...++|.+|+||+++++||+|.|+||+| .|.+.+
T Consensus 81 ~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G--------~f~~~~- 151 (307)
T PLN03116 81 VRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSG--------KVMLLP- 151 (307)
T ss_pred ceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecC--------CceeCC-
Confidence 7999999988432 379999997532111 0 1114799999998899999999999999 554422
Q ss_pred CCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC----CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEE
Q psy581 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWY 246 (343)
Q Consensus 171 ~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~----~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~ 246 (343)
+ ....++++||||||||||+++|+++++.... ...+++|+|++|+.++++|.+||++|++.++++|+++.
T Consensus 152 ~------~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~ 225 (307)
T PLN03116 152 E------EDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDY 225 (307)
T ss_pred C------CCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEE
Confidence 0 0124689999999999999999998865331 13579999999999999999999999999886699999
Q ss_pred EecCCCCCCcccccccCHHHHHhhc----CCCCCCcEEEEeCC
Q psy581 247 TVDRPEDGWKYSTGFVSAEMIAEHL----FPPSPDNLVLMCGP 285 (343)
Q Consensus 247 ~~~~~~~~~~~~~g~~~~~~l~~~~----~~~~~~~~i~vCGp 285 (343)
+++++...|.+..|+++. .+.+.. .....+..+|+|||
T Consensus 226 ~~sr~~~~~~g~~g~v~~-~l~~~~~~~~~~~~~~~~vYiCGp 267 (307)
T PLN03116 226 ALSREQKNKKGGKMYVQD-KIEEYSDEIFKLLDNGAHIYFCGL 267 (307)
T ss_pred EEccCCcccCCCccchhh-HHHHHHHHHHhhhcCCcEEEEeCC
Confidence 998876666555667665 333221 11124578999999
No 39
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-33 Score=263.18 Aligned_cols=215 Identities=20% Similarity=0.335 Sum_probs=176.7
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~ 129 (343)
..+++|++++.++++++.|+|+.+. ...|+||||+.|+++ + ...|+|||++.|.+.+.++|+||.+
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~---~~~~~~GQfv~l~~~--~-~~~R~ySias~p~~~~~l~~~I~~~-------- 156 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPER---PLRYRAGQHLVLWTA--G-GVARPYSLASLPGEDPFLEFHIDCS-------- 156 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCC---cCCcCCCCEEEEecC--C-CcccccccCcCCCCCCeEEEEEEEc--------
Confidence 4679999999999999999998653 368999999999875 2 2579999999987778999999976
Q ss_pred CCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC
Q psy581 130 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 209 (343)
Q Consensus 130 ~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~ 209 (343)
++|.+|+||+++++|++|.+.+|.|. .|.++. + ...+++|||||||||||+++|++++.+.+ .
T Consensus 157 -~~G~~s~~l~~l~~Gd~v~l~~p~gg-------~~~~~~-~-------~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~ 219 (312)
T PRK05713 157 -RPGAFCDAARQLQVGDLLRLGELRGG-------ALHYDP-D-------WQERPLWLLAAGTGLAPLWGILREALRQG-H 219 (312)
T ss_pred -CCCccchhhhcCCCCCEEEEccCCCC-------ceEecC-C-------CCCCcEEEEecCcChhHHHHHHHHHHhcC-C
Confidence 78999999999999999999999983 344443 0 02478999999999999999999988765 4
Q ss_pred CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccc
Q psy581 210 NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKT 289 (343)
Q Consensus 210 ~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~ 289 (343)
..+++|+|++|+.++++|.++|++|++++++ |+++++.++. +.+ .+.+. ........+|+|||
T Consensus 220 ~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~-~~~~~~~~~~----------~~~-~l~~~-~~~~~~~~vyiCGp---- 282 (312)
T PRK05713 220 QGPIRLLHLARDSAGHYLAEPLAALAGRHPQ-LSVELVTAAQ----------LPA-ALAEL-RLVSRQTMALLCGS---- 282 (312)
T ss_pred CCcEEEEEEcCchHHhhhHHHHHHHHHHCCC-cEEEEEECcc----------hhh-hhhhc-cCCCCCeEEEEeCC----
Confidence 5689999999999999999999999998885 8888766531 222 23222 11224578999999
Q ss_pred cccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 290 VKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++.+.|.++|++.++||+
T Consensus 283 -----------------------------~~mv~-~~~~~L~~~Gv~~~~i~~ 305 (312)
T PRK05713 283 -----------------------------PASVE-RFARRLYLAGLPRNQLLA 305 (312)
T ss_pred -----------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 99999 888999999999999985
No 40
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=7.7e-33 Score=255.64 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=177.3
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~ 129 (343)
..+++|+++++++++++.|+|+.+ ..|+||||+.|.++..+ .|+||+++.+ .+.++|+||.
T Consensus 7 ~~~~~v~~i~~~t~~~~~~~l~~~-----~~~~pGQfi~l~~~~~~---~~pySi~~~~--~~~~~~~Ik~--------- 67 (263)
T PRK08221 7 PAAYKILDITKHTDIEYTFRVEVD-----GPVKPGQFFEVSLPKVG---EAPISVSDYG--DGYIDLTIRR--------- 67 (263)
T ss_pred CccEEEEEEeccCCcEEEEEecCC-----CCCCCCceEEEEeCCCC---cceeeccCCC--CCEEEEEEEe---------
Confidence 456999999999999999999864 36899999999987544 3899998864 4789999995
Q ss_pred CCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC
Q psy581 130 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 209 (343)
Q Consensus 130 ~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~ 209 (343)
.|.+|+||+++++|++|.|+||+|. .|.++. ...++++||||||||||++++++++......
T Consensus 68 --~G~~S~~L~~l~~Gd~v~v~gP~G~-------~f~~~~---------~~~~~~llIAgGtGItP~~sil~~~~~~~~~ 129 (263)
T PRK08221 68 --VGKVTDEIFNLKEGDKLFLRGPYGN-------GFPVDT---------YKGKELIVVAGGTGVAPVKGLMRYFYENPQE 129 (263)
T ss_pred --CCchhhHHHhCCCCCEEEEECCCCC-------CcccCc---------cCCccEEEEcccccHHHHHHHHHHHHhCccc
Confidence 4899999999999999999999994 365543 1247899999999999999999998765433
Q ss_pred CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccc
Q psy581 210 NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKT 289 (343)
Q Consensus 210 ~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~ 289 (343)
..+++|+|++|+.+++++.++|++|.+++ .+++++++..+.|.+..|++.+. +.+.......+..+|+|||
T Consensus 130 ~~~v~L~~g~r~~~~l~~~~el~~~~~~~----~~~~~~~~~~~~~~~~~G~v~~~-l~~~~~~~~~~~~vylCGp---- 200 (263)
T PRK08221 130 IKSLDLILGFKNPDDILFKEDLKRWREKI----NLILTLDEGEEGYRGNVGLVTKY-IPELTLKDIDNMQVIVVGP---- 200 (263)
T ss_pred CceEEEEEecCCHHHhhHHHHHHHHhhcC----cEEEEecCCCCCCccCccccChh-hHhccCCCcCCeEEEEECC----
Confidence 46899999999999999999999998754 34555666666677788999864 4433112235678999999
Q ss_pred cccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 290 VKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
|+|++ ++...|+++|++.++|+.
T Consensus 201 -----------------------------~~mv~-~~~~~L~~~Gv~~~~i~~ 223 (263)
T PRK08221 201 -----------------------------PIMMK-FTVLEFLKRGIKEENIWV 223 (263)
T ss_pred -----------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 99999 788899999999999985
No 41
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.6e-32 Score=246.07 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=166.9
Q ss_pred eCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhh
Q psy581 61 INHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE 140 (343)
Q Consensus 61 i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~ 140 (343)
.+.+++.|+|+++... ..|+||||+.|.++.++....|+|||++.+.+.+.++|+||. .|.+|++|.
T Consensus 5 ~~~~~~~i~l~~~~~~--~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~-----------~G~~t~~l~ 71 (216)
T cd06198 5 EVRPTTTLTLEPRGPA--LGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKA-----------LGDYTRRLA 71 (216)
T ss_pred EecceEEEEEeeCCCC--CCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEe-----------CChHHHHHH
Confidence 4566888999876543 679999999999986666788999999998777899999996 488999997
Q ss_pred -cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEec
Q psy581 141 -NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 219 (343)
Q Consensus 141 -~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~ 219 (343)
++++|++|.|+||+| .|.++. ..++++|||||+||||++++++++.... ...+++++|++
T Consensus 72 ~~l~~G~~v~i~gP~G--------~~~~~~----------~~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~ 132 (216)
T cd06198 72 ERLKPGTRVTVEGPYG--------RFTFDD----------RRARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCV 132 (216)
T ss_pred HhCCCCCEEEEECCCC--------CCcccc----------cCceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEE
Confidence 899999999999999 565554 2578999999999999999999988764 35789999999
Q ss_pred CCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHH-HhhcCCCCCCcEEEEeCCCccccccccCCCC
Q psy581 220 QSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMI-AEHLFPPSPDNLVLMCGPPRKTVKNNLKPED 298 (343)
Q Consensus 220 r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~ 298 (343)
|+.++++|.++|.++..++ +++++++.++. ..+ .....+ .+... ...+..+|+|||
T Consensus 133 r~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~-~~~------~~~~~~~~~~~~-~~~~~~vyicGp------------- 189 (216)
T cd06198 133 RDPEDAVFLDELRALAAAA--GVVLHVIDSPS-DGR------LTLEQLVRALVP-DLADADVWFCGP------------- 189 (216)
T ss_pred CCHHHhhhHHHHHHHHHhc--CeEEEEEeCCC-Ccc------cchhhhhhhcCC-CcCCCeEEEECc-------------
Confidence 9999999999999998876 47777655432 221 222112 12222 235679999999
Q ss_pred cccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 299 KKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ +++..|.++|++.++|++
T Consensus 190 --------------------~~m~~-~v~~~l~~~Gv~~~~I~~ 212 (216)
T cd06198 190 --------------------PGMAD-ALEKGLRALGVPARRFHY 212 (216)
T ss_pred --------------------HHHHH-HHHHHHHHcCCChHhcch
Confidence 99999 888999999999999975
No 42
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=4.4e-32 Score=253.57 Aligned_cols=232 Identities=22% Similarity=0.302 Sum_probs=177.3
Q ss_pred cCCCceEeEEEEEEEEeC-----CCEEEEEEECCCCCccCCCCCCCEEEEEEee----CC-eeeeeeceeccCCCC----
Q psy581 45 VDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGLPIGQHLSLSATI----ND-EFVARAYTPVTSDEH---- 110 (343)
Q Consensus 45 ~~p~~~~~~~v~~~~~i~-----~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~----~g-~~~~R~yTi~s~~~~---- 110 (343)
.-++..+.++|++++.++ ++++.++|+.+. .+.|+||||+.|.++. .+ ....|+|||++.+.+
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~ 79 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGG---KLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGD 79 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeCCC---cccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCC
Confidence 446677889999999999 699999998743 3789999999998652 12 134799999998743
Q ss_pred CCeEEEEEEEEeecC-CCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEc
Q psy581 111 HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAG 189 (343)
Q Consensus 111 ~~~l~~~Vk~~~~~~-~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~ 189 (343)
.+.++|+||...... ..+....|.+|.||+++++|++|.|.||+|. |.+.+ + ...++++||||
T Consensus 80 ~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--------~~~~~-~-------~~~~~~vlIag 143 (286)
T cd06208 80 GKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGK--------TMLLP-E-------DPNATLIMIAT 143 (286)
T ss_pred CCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCC--------cccCC-C-------CCCCCEEEEec
Confidence 478999999861100 0001112899999999999999999999994 43322 0 02468999999
Q ss_pred CcchHhHHHHHHHHHhCC----CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHH
Q psy581 190 GTGITPMLQLVRHITKDP----TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAE 265 (343)
Q Consensus 190 GtGIap~~sll~~~~~~~----~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 265 (343)
||||||++++++++.... ....+++|+|++|+.++++|.++|+++.++++++++++++++++.+.|.+..|+++..
T Consensus 144 GtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~ 223 (286)
T cd06208 144 GTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDR 223 (286)
T ss_pred CccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhH
Confidence 999999999999987541 1346899999999999999999999999988867999999988776666667777652
Q ss_pred HHHh-------hcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh
Q psy581 266 MIAE-------HLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK 332 (343)
Q Consensus 266 ~l~~-------~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (343)
+.+ .+. ..+..+|+||| ++|++ .+..+|.+
T Consensus 224 -i~~~~~~l~~~l~--~~~~~vYiCGp---------------------------------~~m~~-~v~~~L~~ 260 (286)
T cd06208 224 -IAEYAEEIWNLLD--KDNTHVYICGL---------------------------------KGMEP-GVDDALTS 260 (286)
T ss_pred -HHHhHHHHHHHHh--cCCcEEEEeCC---------------------------------chHHH-HHHHHHHH
Confidence 222 121 23568999999 99999 77777765
No 43
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=100.00 E-value=5e-32 Score=249.92 Aligned_cols=217 Identities=24% Similarity=0.391 Sum_probs=174.9
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~ 129 (343)
.++++|+++.+++++++.|+++.+ ..|+||||+.|.++..+ .|+||+++. +.+.++|+||.
T Consensus 5 ~~~~~v~~~~~~t~~~~~~~~~~~-----~~~~pGQ~v~l~~~~~~---~~pySi~~~--~~~~l~~~Vk~--------- 65 (261)
T TIGR02911 5 PFKSEILEIIKHTDIEYTFRMSYD-----GPVKPGQFFEVSLPKYG---EAPISVSGI--GEGYIDLTIRR--------- 65 (261)
T ss_pred CceEEEEEEeeccCCEEEEEcCCC-----CCCCCCcEEEEEecCCC---ccceecCCC--CCCeEEEEEEe---------
Confidence 346899999999999999999653 46899999999997544 489999874 34789999995
Q ss_pred CCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC
Q psy581 130 PDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD 209 (343)
Q Consensus 130 ~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~ 209 (343)
.|.+|.+|+++++||+|.|+||+|. .|.++. ...++++||||||||||++++++++.++...
T Consensus 66 --~G~~S~~L~~l~~Gd~v~i~gP~G~-------~f~~~~---------~~~~~~llIAgGtGIaP~~sil~~l~~~~~~ 127 (261)
T TIGR02911 66 --VGKVTDEVFTLKEGDNLFLRGPYGN-------GFDVDN---------YKHKELVVVAGGTGVAPVKGVVEYFVKNPKE 127 (261)
T ss_pred --CchhhHHHHcCCCCCEEEEecCCCC-------CcccCc---------cCCceEEEEecccCcHHHHHHHHHHHhCccc
Confidence 4899999999999999999999994 265543 1257899999999999999999998765423
Q ss_pred CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccc
Q psy581 210 NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKT 289 (343)
Q Consensus 210 ~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~ 289 (343)
..+++|+|++|+.+++++.++|++|..++ ++ +.+++++.++|....|++... +.+....+..+..+|+|||
T Consensus 128 ~~~v~L~~~~r~~~~~~~~~eL~~l~~~~--~~--~~~~~~~~~~~~~~~g~v~~~-l~~~~~~~~~~~~v~lCGp---- 198 (261)
T TIGR02911 128 IKSLNLILGFKTPDDILFKEDIAEWKGNI--NL--TLTLDEAEEDYKGNIGLVTKY-IPELTLKDIEEVQAIVVGP---- 198 (261)
T ss_pred CceEEEEEecCCHHHhhHHHHHHHHHhcC--cE--EEEEcCCCCCCcCCeeccCHh-HHhccCCCccceEEEEECC----
Confidence 46899999999999999999999998753 24 444555555666678888864 3332222234578999999
Q ss_pred cccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 290 VKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ +++..|.++|+++++|+.
T Consensus 199 -----------------------------~~mv~-~~~~~L~~~Gv~~~~i~~ 221 (261)
T TIGR02911 199 -----------------------------PIMMK-FTVQELLKKGIKEENIWV 221 (261)
T ss_pred -----------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 99999 788899999999999986
No 44
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=100.00 E-value=8.5e-32 Score=257.65 Aligned_cols=224 Identities=22% Similarity=0.308 Sum_probs=172.5
Q ss_pred ccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEee---CCee-eeeeceeccCCC---
Q psy581 42 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATI---NDEF-VARAYTPVTSDE--- 109 (343)
Q Consensus 42 ~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~---~g~~-~~R~yTi~s~~~--- 109 (343)
.....|...+.++|++++.++. +++.|+|+.+. .+.|.||||+.|.++. +|.. ..|+|||+|.+.
T Consensus 82 ~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~---~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~ 158 (367)
T PLN03115 82 VNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG---EIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDF 158 (367)
T ss_pred eEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC---CCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccC
Confidence 4467788889999999999987 89999997654 3789999999998753 2332 579999999873
Q ss_pred -CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEE
Q psy581 110 -HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIA 188 (343)
Q Consensus 110 -~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA 188 (343)
+.+.++|+||+..+..+......|.+|.||+++++||+|.|.||+|. .|.++. + ..++++|||
T Consensus 159 ~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~-------~fllp~-~--------~~~~iImIA 222 (367)
T PLN03115 159 GDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGK-------EMLMPK-D--------PNATIIMLA 222 (367)
T ss_pred CCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCC-------ceeCCc-C--------CCCCEEEEe
Confidence 24689999996433221122246999999999999999999999995 233332 1 246899999
Q ss_pred cCcchHhHHHHHHHHHhCCC----CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCH
Q psy581 189 GGTGITPMLQLVRHITKDPT----DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA 264 (343)
Q Consensus 189 ~GtGIap~~sll~~~~~~~~----~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 264 (343)
|||||||++++++++..... ...+++|+|++|+.++++|.+||+++.+.++++|+++++++++++.|.+..|+++.
T Consensus 223 gGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd 302 (367)
T PLN03115 223 TGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQT 302 (367)
T ss_pred CCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehh
Confidence 99999999999998753321 13579999999999999999999999999886799999999988777777778765
Q ss_pred HHHHhh---cC--CCCCCcEEEEeCC
Q psy581 265 EMIAEH---LF--PPSPDNLVLMCGP 285 (343)
Q Consensus 265 ~~l~~~---~~--~~~~~~~i~vCGp 285 (343)
.+.+. +. -...+..+|+|||
T Consensus 303 -~i~e~~e~l~~~l~~~~~~vYiCGp 327 (367)
T PLN03115 303 -RMAEYAEELWELLKKDNTYVYMCGL 327 (367)
T ss_pred -HHHHHHHHHHhhcccCCeEEEEeCC
Confidence 33321 10 0124679999999
No 45
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.98 E-value=2.7e-31 Score=237.18 Aligned_cols=205 Identities=23% Similarity=0.406 Sum_probs=164.5
Q ss_pred EEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCC-c
Q psy581 56 KEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG-K 134 (343)
Q Consensus 56 ~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G-~ 134 (343)
++++.+++++++++|+.+.......|+||||+.|+++. ...|+|||++.+.+.+.++|+||.+ .+| .
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~---------~~g~~ 68 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLRE---------PASRG 68 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEec---------cCCCc
Confidence 36789999999999999876554589999999999864 3579999999987778999999986 444 4
Q ss_pred cchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 135 MSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 135 ~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
+|.||. .+++|++|.++||+| .|.+.+ ..++++|||+|+||||++++++++.... .++
T Consensus 69 ~s~~l~~~~~~Gd~v~i~gP~g--------~f~~~~----------~~~~~v~ia~GtGiap~~~il~~~~~~~---~~v 127 (211)
T cd06185 69 GSRYMHELLRVGDELEVSAPRN--------LFPLDE----------AARRHLLIAGGIGITPILSMARALAARG---ADF 127 (211)
T ss_pred hHHHHHhcCCCCCEEEEcCCcc--------CCcCCC----------CCCcEEEEeccchHhHHHHHHHHHHhCC---CCE
Confidence 899995 689999999999999 665544 2578999999999999999999987643 589
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+++|++|+.+++++.++|+++. .+ ++++++ ++. .++.... +.+........+|+|||
T Consensus 128 ~l~~~~r~~~~~~~~~~l~~~~--~~-~~~~~~--~~~-------~~~~~~~---~~~~~~~~~~~vyicGp-------- 184 (211)
T cd06185 128 ELHYAGRSREDAAFLDELAALP--GD-RVHLHF--DDE-------GGRLDLA---ALLAAPPAGTHVYVCGP-------- 184 (211)
T ss_pred EEEEEeCCCcchhHHHHHhhhc--CC-cEEEEE--CCC-------CCccCHH---HHhccCCCCCEEEEECC--------
Confidence 9999999999999999999887 22 466553 321 1233322 22222234579999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
+.|++ ++...|.++|++.++|++
T Consensus 185 -------------------------~~m~~-~~~~~l~~~gv~~~~i~~ 207 (211)
T cd06185 185 -------------------------EGMMD-AVRAAAAALGWPEARLHF 207 (211)
T ss_pred -------------------------HHHHH-HHHHHHHHcCCChhheEe
Confidence 99999 888999999999999985
No 46
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.98 E-value=9.2e-31 Score=240.07 Aligned_cols=211 Identities=34% Similarity=0.591 Sum_probs=182.4
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD 131 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~ 131 (343)
.++|++++.++++++.++|+.+... +.++||||+.|+++. ...||||+++.+.+.+.++|.|+.+ .
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~--~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~---------~ 74 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA--LTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVY---------E 74 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc--cccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEE---------e
Confidence 5999999999999999999988765 789999999999985 5789999999998889899999987 7
Q ss_pred CCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 132 GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 132 ~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
.|.+|.+++.+++||.|.++||+|+ .|..+. ..+++++||||||+||++++++++..++ ...
T Consensus 75 ~G~~T~~i~~~k~gd~i~v~GP~G~-------~~~~~~----------~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~ 136 (252)
T COG0543 75 VGKVTKYIFGLKEGDKIRVRGPLGN-------GFLREK----------IGKPVLLIAGGTGIAPLYAIAKELKEKG-DAN 136 (252)
T ss_pred CChHHHHHhhccCCCEEEEEcCCCC-------Cccccc----------cCCcEEEEecccCHhHHHHHHHHHHhcC-CCc
Confidence 8999999999999999999999996 444443 2455999999999999999999998876 678
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+|+++|++|+.+++++.++++++..+ +++++++ ++|.+..|.++.+.+.+.+.. +...+|+|||
T Consensus 137 ~V~~~~G~~~~~dl~~~~el~~~~~~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp------ 200 (252)
T COG0543 137 KVTLLYGARTAKDLLLLDELEELAEK-----EVHPVTD---DGWKGRKGFVTTDVLKELLDL--EVDDVYICGP------ 200 (252)
T ss_pred eEEEEEeccChhhcccHHHHHHhhcC-----cEEEEEC---CCCCccCcceeHHHHhhhccc--cCCEEEEECC------
Confidence 99999999999999999999999764 3555555 667778999977777776643 5689999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEK 338 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~ 338 (343)
|.|++ ++.+.+.+.|+...
T Consensus 201 ---------------------------~~M~~-~v~~~~~~~g~~~~ 219 (252)
T COG0543 201 ---------------------------PAMVK-AVREKLKEYGVPIS 219 (252)
T ss_pred ---------------------------HHHHH-HHHHHHHhcCCchh
Confidence 99999 88899999987443
No 47
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.97 E-value=1.5e-30 Score=238.17 Aligned_cols=206 Identities=27% Similarity=0.472 Sum_probs=165.9
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEee-CCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCC
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~-~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
|++++.+++++++|+|+.+.. ...|+||||+.|.++. .+....|+||+++.+.+.+.++|+||. .|
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~-----------~G 67 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI--AAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKV-----------VG 67 (246)
T ss_pred CcceeEecCCeEEEEEeCcch--hccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEE-----------EC
Confidence 568899999999999998763 4689999999999986 334678999999988767899999996 37
Q ss_pred ccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 134 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 134 ~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
.+|+||+++++|++|.|.||+|. .|.++. ..++++||||||||||++++++++.... .++
T Consensus 68 ~~s~~l~~l~~Gd~v~i~gP~G~-------~~~~~~----------~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v 127 (246)
T cd06218 68 KGTRLLSELKAGDELDVLGPLGN-------GFDLPD----------DDGKVLLVGGGIGIAPLLFLAKQLAERG---IKV 127 (246)
T ss_pred cchHHHhcCCCCCEEEEEecCCC-------CcCCCC----------CCCcEEEEecccCHHHHHHHHHHHHhcC---Cce
Confidence 88999999999999999999994 354443 3578999999999999999999987643 689
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+++|++|+.++++|.++|++|... ++++ ++ ..|....|++.+ .+.+.... ..+..+|+|||
T Consensus 128 ~l~~~~r~~~d~~~~~eL~~l~~~------~~~~-~~--~~~~~~~g~v~~-~l~~~~~~-~~~~~vyiCGp-------- 188 (246)
T cd06218 128 TVLLGFRSADDLFLVEEFEALGAE------VYVA-TD--DGSAGTKGFVTD-LLKELLAE-ARPDVVYACGP-------- 188 (246)
T ss_pred EEEEEccchhhhhhHHHHHhhCCc------EEEE-cC--CCCCCcceehHH-HHHHHhhc-cCCCEEEEECC--------
Confidence 999999999999999999988421 2322 22 223445677776 45555432 25689999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCC
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEK 338 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~ 338 (343)
++|++ +++..|+++|++..
T Consensus 189 -------------------------~~mv~-~~~~~L~~~Gv~~~ 207 (246)
T cd06218 189 -------------------------EPMLK-AVAELAAERGVPCQ 207 (246)
T ss_pred -------------------------HHHHH-HHHHHHHhcCCCEE
Confidence 99999 88889999998743
No 48
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.97 E-value=3.7e-30 Score=235.83 Aligned_cols=205 Identities=23% Similarity=0.372 Sum_probs=163.7
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|+++++++++++.|+|+.++. ...|+||||+.|+++..+ ..|+|||++.+.+.+.++|+||. .
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~--~~~~~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~-----------~ 65 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLI--AKKAKPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQV-----------V 65 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhh--hccCCCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEe-----------C
Confidence 47899999999999999998653 357899999999986444 46899999988777899999995 5
Q ss_pred CccchhhhcCCCCCeE-EEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLENMKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~~l~~G~~V-~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|.+|.++++|+++ .++||+|. |.... ..++++|||||+||||++++++++.+.+ .
T Consensus 66 G~~t~~l~~l~~G~~v~~i~gP~G~--------~~~~~----------~~~~~lliagG~GiaP~~~~l~~~~~~~---~ 124 (248)
T cd06219 66 GKSTRELATLEEGDKIHDVVGPLGK--------PSEIE----------NYGTVVFVGGGVGIAPIYPIAKALKEAG---N 124 (248)
T ss_pred CchHHHHHhcCCCCEeeeeecCCCC--------CeecC----------CCCeEEEEeCcccHHHHHHHHHHHHHcC---C
Confidence 8899999999999999 69999994 33222 2468999999999999999999987654 5
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+++++|++|+.++++|.+||+++..+ + ++. ++ +.|.+..|++.+ .+.+.+........+|+|||
T Consensus 125 ~v~l~~~~r~~~~~~~~~el~~l~~~----~--~~~-~~--~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGP------ 188 (248)
T cd06219 125 RVITIIGARTKDLVILEDEFRAVSDE----L--IIT-TD--DGSYGEKGFVTD-PLKELIESGEKVDLVIAIGP------ 188 (248)
T ss_pred eEEEEEEcCCHHHhhhHHHHHhhcCe----E--EEE-eC--CCCCCccccchH-HHHHHHhccCCccEEEEECC------
Confidence 89999999999999999999998643 2 222 22 234445677765 45555533334568999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSE 337 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 337 (343)
++|++ ++.+.|.++|++.
T Consensus 189 ---------------------------~~m~~-~~~~~l~~~Gv~~ 206 (248)
T cd06219 189 ---------------------------PIMMK-AVSELTRPYGIPT 206 (248)
T ss_pred ---------------------------HHHHH-HHHHHHHHcCCCE
Confidence 99999 7788999899873
No 49
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.97 E-value=5.5e-30 Score=239.65 Aligned_cols=196 Identities=22% Similarity=0.388 Sum_probs=155.1
Q ss_pred CCceEeEEEEEEEEeC----CCEEEEEEECCCC----CccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEE
Q psy581 47 PDVKVPLKLKEKIEIN----HDTRCFRFELPSA----EHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 118 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~----~~~~~l~l~~~~~----~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~V 118 (343)
...+.+++|++++.++ ++++.|+|++++. .....|.||||+.|..+ +....|+|||++.+. .+.++|+|
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~--g~~~~R~YSias~p~-~g~l~l~V 118 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPP--GSDVPRFYSLASSSS-DGFLEICV 118 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecC--CCCCCceEecCCCCC-CCeEEEEE
Confidence 4468889999999999 6999999998762 12477999999999753 545679999999884 48899999
Q ss_pred EEEeecCCCCCCCCCccchhhhcCCCCCeEEEec-CccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHH
Q psy581 119 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSG-PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML 197 (343)
Q Consensus 119 k~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~G-P~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~ 197 (343)
|.+ ++|.+|.||+++++|++|.+.+ |.| .|.++. ..++++||||||||||++
T Consensus 119 k~~---------~~G~~S~~L~~l~~Gd~v~v~~~~~g--------~F~~~~----------~~~~lvlIAgGtGIaP~~ 171 (289)
T cd06201 119 RKH---------PGGLCSGYLHGLKPGDTIKAFIRPNP--------SFRPAK----------GAAPVILIGAGTGIAPLA 171 (289)
T ss_pred EeC---------CCccchhhHhhCCCcCEEEEEeccCC--------CccCCC----------CCCCEEEEecCcCHHHHH
Confidence 986 7899999999999999999985 677 676543 357899999999999999
Q ss_pred HHHHHHHhCCCCCccEEEEEecCCch-hhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCH------HHHHhh
Q psy581 198 QLVRHITKDPTDNTKMSLIFANQSEK-DILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA------EMIAEH 270 (343)
Q Consensus 198 sll~~~~~~~~~~~~v~li~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~l~~~ 270 (343)
+|+++... ..+++|+|++|+.+ +++|.++|+++.+++++ ++++.+.+++.. .|+++. +.+.+.
T Consensus 172 s~l~~~~~----~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~-~~~~~~~s~~~~-----~g~v~~~l~~~~~~l~~~ 241 (289)
T cd06201 172 GFIRANAA----RRPMHLYWGGRDPASDFLYEDELDQYLADGRL-TQLHTAFSRTPD-----GAYVQDRLRADAERLRRL 241 (289)
T ss_pred HHHHhhhc----cCCEEEEEEecCcccchHHHHHHHHHHHcCCC-ceEEEEECCCCC-----cccchhHHHHhHHHHHHH
Confidence 99998532 35899999999984 89999999999988874 778777776432 233332 122222
Q ss_pred cCCCCCCcEEEEeCC
Q psy581 271 LFPPSPDNLVLMCGP 285 (343)
Q Consensus 271 ~~~~~~~~~i~vCGp 285 (343)
+. ++..+|+|||
T Consensus 242 ~~---~~~~vyiCGp 253 (289)
T cd06201 242 IE---DGAQIMVCGS 253 (289)
T ss_pred HH---CCcEEEEECC
Confidence 22 3578999999
No 50
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.97 E-value=5.6e-30 Score=238.74 Aligned_cols=204 Identities=23% Similarity=0.356 Sum_probs=163.5
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|+++++++++++.++|+.++. ...++||||+.|+++..+ ..|+|||++.+.+.+.++|+||. .
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~--~~~~~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~-----------~ 66 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRV--AKKAKPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQA-----------V 66 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchh--hccCCCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEe-----------C
Confidence 57999999999999999987643 256899999999986444 36899999987777899999996 5
Q ss_pred CccchhhhcCCCCCeE-EEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLENMKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~~l~~G~~V-~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|++|+++++||+| .|+||+|+ .|.. + ..+++++||||+||||++++++++...+ .
T Consensus 67 G~~T~~L~~l~~Gd~v~~i~GP~G~-------~~~~-~----------~~~~~llIaGGiGiaPl~~l~~~l~~~~---~ 125 (281)
T PRK06222 67 GKSTRKLAELKEGDSILDVVGPLGK-------PSEI-E----------KFGTVVCVGGGVGIAPVYPIAKALKEAG---N 125 (281)
T ss_pred CcHHHHHhcCCCCCEEeeEEcCCCC-------Cccc-C----------CCCeEEEEeCcCcHHHHHHHHHHHHHCC---C
Confidence 9999999999999999 79999995 2322 2 2468999999999999999999987654 4
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+++++|++|+.+++++.++|+++..+ + ++. ++ ++|.+..|++++ .+.+.+........+|+|||
T Consensus 126 ~v~l~~g~r~~~d~~~~~el~~~~~~----~--~v~-~~--d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP------ 189 (281)
T PRK06222 126 KVITIIGARNKDLLILEDEMKAVSDE----L--YVT-TD--DGSYGRKGFVTD-VLKELLESGKKVDRVVAIGP------ 189 (281)
T ss_pred eEEEEEecCCHHHhhcHHHHHhhCCe----E--EEE-cC--CCCcCcccchHH-HHHHHhhcCCCCcEEEEECC------
Confidence 89999999999999999999887542 2 222 22 345556788876 55555443222468999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
++|++ ++.+.|.+.|++
T Consensus 190 ---------------------------~~M~~-~v~~~l~~~gv~ 206 (281)
T PRK06222 190 ---------------------------VIMMK-FVAELTKPYGIK 206 (281)
T ss_pred ---------------------------HHHHH-HHHHHHHhcCCC
Confidence 99999 778899988985
No 51
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.97 E-value=1.2e-29 Score=231.68 Aligned_cols=207 Identities=20% Similarity=0.302 Sum_probs=161.5
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCc
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK 134 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~ 134 (343)
|++++.+++++++|+|+.++. ...|+||||+.|.++..+....|+|||++.+.+.+.++|+||. .|.
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~-----------~G~ 67 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA--ARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEI-----------RGP 67 (243)
T ss_pred CceEEEecCCEEEEEEEccch--hhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEE-----------cCc
Confidence 468899999999999998653 3679999999999875555678999999998777899999995 488
Q ss_pred cchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEE
Q psy581 135 MSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMS 214 (343)
Q Consensus 135 ~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~ 214 (343)
+|+||.++++|++|.|+||+|+ +.... ...++++||||||||||++++++++..++ .+++
T Consensus 68 ~t~~l~~~~~G~~l~i~gP~G~--------~~~~~---------~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~ 127 (243)
T cd06192 68 KTKLIAELKPGEKLDVMGPLGN--------GFEGP---------KKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVT 127 (243)
T ss_pred hHHHHHhCCCCCEEEEEccCCC--------CCccC---------CCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEE
Confidence 9999999999999999999994 32222 02578999999999999999999988653 6899
Q ss_pred EEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcccccccc
Q psy581 215 LIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNL 294 (343)
Q Consensus 215 li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l 294 (343)
++|++|+.+++++.++|+++. ...++ + ++ ++|....|++... . ...+ ......+|+|||
T Consensus 128 l~~~~r~~~d~~~~~el~~~~-----~~~~~-~-~~--~~~~~~~g~v~~~-~-~~~~-~~~~~~v~icGp--------- 186 (243)
T cd06192 128 VLAGAKKAKEEFLDEYFELPA-----DVEIW-T-TD--DGELGLEGKVTDS-D-KPIP-LEDVDRIIVAGS--------- 186 (243)
T ss_pred EEEecCcHHHHHHHHHHHhhc-----CeEEE-E-ec--CCCCccceeechh-h-hhhh-cccCCEEEEECC---------
Confidence 999999999999999998872 12222 2 22 2344466777653 1 1122 123468999999
Q ss_pred CCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceE
Q psy581 295 KPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRF 341 (343)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~ 341 (343)
++|++ +++..|+++| +..+++
T Consensus 187 ------------------------~~mv~-~~~~~l~~~g-~~~~~~ 207 (243)
T cd06192 187 ------------------------DIMMK-AVVEALDEWL-QLIKAS 207 (243)
T ss_pred ------------------------HHHHH-HHHHHHHhhc-CCceEE
Confidence 99999 7788888887 554544
No 52
>PRK05802 hypothetical protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=238.23 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=164.8
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
.+..+++++|++++.++++++.|+|+.|+......++||||+.|+++..+....|||||++.+.+.+.++|+||.
T Consensus 60 ~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~----- 134 (320)
T PRK05802 60 EGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEI----- 134 (320)
T ss_pred CccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEe-----
Confidence 345678899999999999999999998764322457999999999876566678999999998777999999995
Q ss_pred CCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 126 HPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
.|.+|++|+++++|++|.|+||+|+ |.|.+... +....+++++||||+||||++++++++.+
T Consensus 135 ------~G~~T~~L~~l~~Gd~l~v~GP~Gn------G~F~l~~~------~~~~~~~~llIaGGiGIaPl~~l~~~l~~ 196 (320)
T PRK05802 135 ------RGVKTKKIAKLNKGDEILLRGPYWN------GILGLKNI------KSTKNGKSLVIARGIGQAPGVPVIKKLYS 196 (320)
T ss_pred ------cChhHHHHhcCCCCCEEEEeCCCCc------CcCCcccc------cccCCCeEEEEEeEEeHHHHHHHHHHHHH
Confidence 5999999999999999999999973 34544320 01124689999999999999999999987
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCC
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp 285 (343)
++ .+++++|++|+.+++++.++|+++..+ +.+..++++...++. ..|.+ .+.+.. .+...+|+|||
T Consensus 197 ~~---~~v~li~g~r~~~~~~~~~el~~~~~~----~~~~~~~ddG~~~~~-~~g~v-----~~~l~~-~~~~~vy~CGP 262 (320)
T PRK05802 197 NG---NKIIVIIDKGPFKNNFIKEYLELYNIE----IIELNLLDDGELSEE-GKDIL-----KEIIKK-EDINLIHCGGS 262 (320)
T ss_pred cC---CcEEEEEeCCCHHHHHHHHHHHHhhCc----eEEEEecccCCCCcc-ccchH-----HHHhcC-CCCCEEEEECC
Confidence 65 489999999999999999999988654 222322232111111 12333 333332 23468999999
Q ss_pred CccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh
Q psy581 286 PRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK 332 (343)
Q Consensus 286 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 332 (343)
+.|++ ++.+.|.+
T Consensus 263 ---------------------------------~~M~k-~v~~~l~~ 275 (320)
T PRK05802 263 ---------------------------------DILHY-KIIEYLDK 275 (320)
T ss_pred ---------------------------------HHHHH-HHHHHHhh
Confidence 99999 77788877
No 53
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.97 E-value=1.8e-29 Score=231.60 Aligned_cols=203 Identities=19% Similarity=0.379 Sum_probs=164.7
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
+++.++|+++++++++++.|+|+.+ ....|+||||+.|.++..+....|+||+++.+ .+.++|+||.
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~---~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~-------- 69 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGE---KVFDMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRK-------- 69 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCc---cccCCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEE--------
Confidence 4678999999999999999999954 34789999999999986655678999999987 4789999995
Q ss_pred CCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC
Q psy581 129 FPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 208 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~ 208 (343)
.|.+|++|+++++|++|.|.||+|. .|.++. ..+++++||||+||||++++++++....
T Consensus 70 ---~G~~t~~l~~l~~G~~v~i~gP~G~-------~f~l~~----------~~~~~vlIagG~GiaP~~s~l~~~~~~~- 128 (250)
T PRK00054 70 ---VGEGTKKLSKLKEGDELDIRGPLGN-------GFDLEE----------IGGKVLLVGGGIGVAPLYELAKELKKKG- 128 (250)
T ss_pred ---cChHHHHHhcCCCCCEEEEEcccCC-------CCCCCC----------CCCeEEEEeccccHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999994 365543 3578999999999999999999987654
Q ss_pred CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 209 DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 209 ~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
.+++++|++|+.++++|.++|+++. ++ ++..+ +.|.+..|++.+ .+.+.. .....+|+|||
T Consensus 129 --~~v~l~~~~r~~~d~~~~~el~~~~-----~~--~~~~~---~~~~~~~g~v~~-~l~~~~---~~~~~vyvCGp--- 189 (250)
T PRK00054 129 --VEVTTVLGARTKDEVIFEEEFAKVG-----DV--YVTTD---DGSYGFKGFVTD-VLDELD---SEYDAIYSCGP--- 189 (250)
T ss_pred --CcEEEEEEcCCHHHhhhHHHHHhcC-----CE--EEEec---CCCCCcccchhH-hHhhhc---cCCCEEEEeCC---
Confidence 5799999999999999999999842 12 22222 233445677776 344332 23458999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCC
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGY 335 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~ 335 (343)
+.|++ ++.+.|.++|+
T Consensus 190 ------------------------------~~m~~-~v~~~l~~~Gv 205 (250)
T PRK00054 190 ------------------------------EIMMK-KVVEILKEKKV 205 (250)
T ss_pred ------------------------------HHHHH-HHHHHHHHcCC
Confidence 99999 88888988888
No 54
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.97 E-value=2e-29 Score=246.20 Aligned_cols=222 Identities=19% Similarity=0.317 Sum_probs=166.5
Q ss_pred ccccccccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEee---CCe-eeeeeceecc
Q psy581 36 SSKKELKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATI---NDE-FVARAYTPVT 106 (343)
Q Consensus 36 ~~~~~~~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~---~g~-~~~R~yTi~s 106 (343)
|..++...+..+...++++|++++.+++ +++.|+|+.++. ...|.||||+.|.++. .+. ...|+|||++
T Consensus 128 ~~~~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~--~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas 205 (411)
T TIGR03224 128 SAAHPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSH--PFPVLEGQSIGILPPGTDASGKPHYARMYSVAS 205 (411)
T ss_pred cccCCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCC--cCCccCCcEEEEecCCcCcCCCcCcceeeeecC
Confidence 4456677888999999999999999955 999999987653 3779999999998763 222 3679999999
Q ss_pred CCCCC----CeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcc
Q psy581 107 SDEHH----GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVT 182 (343)
Q Consensus 107 ~~~~~----~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~ 182 (343)
.+.+. +.++|+||++.. .+...+..|.+|+||+++++||+|.|+||+|. .|.++. ...+
T Consensus 206 ~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~-------~f~lp~---------~~~~ 268 (411)
T TIGR03224 206 PRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGDKVQVIGPFGS-------TFLMPN---------HPES 268 (411)
T ss_pred CCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcCEEEEEeccCC-------cccCCC---------CCCC
Confidence 86321 479999998631 11122336999999999999999999999995 355543 0246
Q ss_pred eEEEEEcCcchHhHHHHHHHHHhC--CCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCccccc
Q psy581 183 QLSMIAGGTGITPMLQLVRHITKD--PTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTG 260 (343)
Q Consensus 183 ~vv~iA~GtGIap~~sll~~~~~~--~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 260 (343)
+++||||||||||+++|++++... .....+++|+|++|+.++++|.++|.+|.+.+. ++++++++...+ ..|
T Consensus 269 ~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~~---~~~~~~sr~~~~---~~g 342 (411)
T TIGR03224 269 SIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDFI---DINFAFSRTPEQ---PKR 342 (411)
T ss_pred CEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcCc---eEEEEeccCCcc---Ccc
Confidence 899999999999999999998642 113578999999999999999999999987754 455566654332 346
Q ss_pred ccCHHHHHh-------hcCCCCCCcEEEEeCC
Q psy581 261 FVSAEMIAE-------HLFPPSPDNLVLMCGP 285 (343)
Q Consensus 261 ~~~~~~l~~-------~~~~~~~~~~i~vCGp 285 (343)
++++ .+.+ .+. ..+..+|+|||
T Consensus 343 ~V~d-~l~~~~~~v~~ll~--~~~~~vYiCGp 371 (411)
T TIGR03224 343 YVQD-AIRERAADVAALLK--DPNTYIYICGL 371 (411)
T ss_pred cHhh-HHHHhHHHHHHHHh--cCCcEEEEECC
Confidence 6654 2222 222 13578999999
No 55
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.9e-29 Score=233.06 Aligned_cols=216 Identities=23% Similarity=0.351 Sum_probs=178.3
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC-eeeeeeceeccCCCCCCeEEEEEEEEeecCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHP 127 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g-~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~ 127 (343)
..|.++|+..+..+.++..++.....+ ..+++|||..+.+++.+ ++.+|||||+++... ..+.|.||.
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~~---~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~-sel~FsIK~------- 282 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQGP---WLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG-SELRFSIKA------- 282 (438)
T ss_pred cccceEEechhhcCcchheeecccCCc---ccccCCceEEEEeccccccCCCCCeeeeeCCCC-ceEEEEehh-------
Confidence 467889999999999988887776544 44899999999998744 678999999998654 589999995
Q ss_pred CCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC
Q psy581 128 KFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 206 (343)
Q Consensus 128 ~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~ 206 (343)
-|++|+-|+ ++++|++++|+|||| .|.+.. .-...|+||||+||||++|+++++...
T Consensus 283 ----LGD~Tk~l~dnLk~G~k~~vdGPYG--------~F~~~~----------g~~~QVWIAGGIGITPFis~l~~l~~~ 340 (438)
T COG4097 283 ----LGDFTKTLKDNLKVGTKLEVDGPYG--------KFDFER----------GLNTQVWIAGGIGITPFISMLFTLAER 340 (438)
T ss_pred ----hhhhhHHHHHhccCCceEEEecCcc--------eeeccc----------CCcccEEEecCcCcchHHHHHHhhccc
Confidence 699999995 699999999999999 566554 223499999999999999999998774
Q ss_pred CCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCC
Q psy581 207 PTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286 (343)
Q Consensus 207 ~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~ 286 (343)
. ..++|+++|++|+.++..|.+||+++.++.|+ +.+|+.-++ ..|.++++.++.. ++.+....+|+|||
T Consensus 341 ~-s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~-~~lHiiDSs-------~~g~l~~e~ler~-~~~~~~~sv~fCGP- 409 (438)
T COG4097 341 K-SDPPVHLFYCSRNWEEALYAEELRALAQKLPN-VVLHIIDSS-------KDGYLDQEDLERY-PDRPRTRSVFFCGP- 409 (438)
T ss_pred c-cCCceEEEEEecCCchhHHHHHHHHHHhcCCC-eEEEEecCC-------CCCccCHHHhhcc-ccccCcceEEEEcC-
Confidence 3 45799999999999999999999999998885 777773222 5688888888776 34445568999999
Q ss_pred ccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceE
Q psy581 287 RKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRF 341 (343)
Q Consensus 287 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~ 341 (343)
++|+| .++..|++.+++-.+++
T Consensus 410 --------------------------------~~m~d-sL~r~l~~~~~~i~~~h 431 (438)
T COG4097 410 --------------------------------IKMMD-SLRRDLKKQNVPITNFH 431 (438)
T ss_pred --------------------------------HHHHH-HHHHHHHHcCCCHHHHH
Confidence 99999 88899999988865543
No 56
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.96 E-value=5.1e-29 Score=227.88 Aligned_cols=188 Identities=18% Similarity=0.252 Sum_probs=139.1
Q ss_pred CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhc-C
Q psy581 64 DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-M 142 (343)
Q Consensus 64 ~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~-l 142 (343)
+++.|+|+.++ ....|+||||+.|.++. ....|+|||+|.|.+ +.++|+||.+... ....|.+|.||++ +
T Consensus 17 ~v~~l~l~~~~--~~~~f~pGQ~v~l~~~~--~~~~R~YSIas~p~~-~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~ 87 (245)
T cd06200 17 PLWRLRLTPPD--AGAQWQAGDIAEIGPRH--PLPHREYSIASLPAD-GALELLVRQVRHA----DGGLGLGSGWLTRHA 87 (245)
T ss_pred ceEEEEEecCC--CCCCccCCcEEEecCCC--CCCCcceEeccCCCC-CEEEEEEEEeccC----CCCCeeechhhhhCC
Confidence 48888898764 24789999999999753 346799999999854 7899999986100 0012789999965 6
Q ss_pred CCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCc
Q psy581 143 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222 (343)
Q Consensus 143 ~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~ 222 (343)
++|++|.|.||.|. .|.++. ..++++||||||||||+++|++++.... ..+++++|++|+.
T Consensus 88 ~~Gd~v~i~gp~gg-------~F~~~~----------~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~ 148 (245)
T cd06200 88 PIGASVALRLRENP-------GFHLPD----------DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQA 148 (245)
T ss_pred CCCCEEEEEecCCC-------cccCCC----------CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCc
Confidence 89999999998763 565543 2478999999999999999999987654 3578999999998
Q ss_pred -hhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCC----CCCCcEEEEeCC
Q psy581 223 -KDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFP----PSPDNLVLMCGP 285 (343)
Q Consensus 223 -~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~~~~i~vCGp 285 (343)
.+++|.+||++|.+++++ +++++++++++.. .|++.. .+.+.... ...+..+|+|||
T Consensus 149 ~~d~~~~~el~~~~~~~~~-~~~~~~~s~~~~~----~~~v~~-~l~~~~~~~~~~~~~~~~vy~CGp 210 (245)
T cd06200 149 AHDFFCREELEAWQAAGHL-ARLDLAFSRDQAQ----KRYVQD-RLRAAADELRAWVAEGAAIYVCGS 210 (245)
T ss_pred cccHhHHHHHHHHHHCCCc-ceEEEEEccCCCC----CcchHH-HHHHhHHHHHHHHHCCcEEEEECC
Confidence 489999999999988774 7777777764432 344433 22211100 013578999999
No 57
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.96 E-value=1e-28 Score=224.26 Aligned_cols=196 Identities=22% Similarity=0.389 Sum_probs=155.9
Q ss_pred EEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCC
Q psy581 54 KLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 54 ~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
+|+++++++++++.++|+.+ ..|+||||+.|.++..+ .|+||+++.+ +.++|+||. .|
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~-----~~~~pGQ~v~l~~~~~~---~~~~Si~s~~---~~l~~~v~~-----------~G 59 (233)
T cd06220 2 TIKEVIDETPTVKTFVFDWD-----FDFKPGQFVMVWVPGVD---EIPMSLSYID---GPNSITVKK-----------VG 59 (233)
T ss_pred EEEEEEEEcCCEEEEEEecC-----CCCCCCceEEEEeCCCC---cceeEEecCC---CeEEEEEEe-----------cC
Confidence 68999999999999999864 47899999999986433 4899999987 789999996 48
Q ss_pred ccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccE
Q psy581 134 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKM 213 (343)
Q Consensus 134 ~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v 213 (343)
.+|+||+++++||+|.+.||+|. .|.++ .++++|||||+||||++++++++... +++
T Consensus 60 ~~s~~L~~l~~Gd~v~i~gP~G~-------~f~~~------------~~~~vliAgGtGitP~~sil~~~~~~----~~i 116 (233)
T cd06220 60 EATSALHDLKEGDKLGIRGPYGN-------GFELV------------GGKVLLIGGGIGIAPLAPLAERLKKA----ADV 116 (233)
T ss_pred hHHHHHHhcCCCCEEEEECcCCC-------CccCC------------CCeEEEEecCcChHHHHHHHHHHHhc----CCE
Confidence 99999999999999999999994 25332 36899999999999999999998764 589
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccc
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNN 293 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~ 293 (343)
+++|++|+.+++++.++|+++ . ++ +++.++ .|....|++.+ .+.+.. ......+|+|||
T Consensus 117 ~l~~~~r~~~d~~~~~eL~~~----~-~~--~~~~~~---~~~~~~g~~~~-~l~~~~--~~~~~~vyicGp-------- 175 (233)
T cd06220 117 TVLLGARTKEELLFLDRLRKS----D-EL--IVTTDD---GSYGFKGFVTD-LLKELD--LEEYDAIYVCGP-------- 175 (233)
T ss_pred EEEEecCChHHChhHHHHhhC----C-cE--EEEEeC---CCCcccceehH-HHhhhc--ccCCCEEEEECC--------
Confidence 999999999999999999872 1 23 223222 34445677776 455443 223468999999
Q ss_pred cCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 294 LKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++.+.|++.|+ +.+|+.
T Consensus 176 -------------------------~~m~~-~~~~~L~~~g~-~~~i~~ 197 (233)
T cd06220 176 -------------------------EIMMY-KVLEILDERGV-RAQFSL 197 (233)
T ss_pred -------------------------HHHHH-HHHHHHHhcCC-cEEEEe
Confidence 88888 77788888888 566553
No 58
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.96 E-value=2.7e-29 Score=228.29 Aligned_cols=209 Identities=15% Similarity=0.215 Sum_probs=160.9
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC-------------------eeeeeeceeccCCCCCCeEE
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND-------------------EFVARAYTPVTSDEHHGYMD 115 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g-------------------~~~~R~yTi~s~~~~~~~l~ 115 (343)
|++++++++++++|+|+.+.......+.||||+.|.++.++ ....|+||+++.+.+.+.++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 57899999999999999876533467899999999997653 46789999999887778999
Q ss_pred EEEEEEeecCCCCCCCC-CccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchH
Q psy581 116 LVVKVYFKNVHPKFPDG-GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGIT 194 (343)
Q Consensus 116 ~~Vk~~~~~~~~~~~~~-G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIa 194 (343)
|.|+.+ .+ |.+|+||+++++||+|.+.||+| .|.++. ..+++||||||||||
T Consensus 81 ~~v~~~---------~~~G~~s~~l~~l~~Gd~v~v~gP~G--------~~~~~~----------~~~~~vlia~GtGi~ 133 (235)
T cd06193 81 IDFVLH---------GDEGPASRWAASAQPGDTLGIAGPGG--------SFLPPP----------DADWYLLAGDETALP 133 (235)
T ss_pred EEEEeC---------CCCCchHHHHhhCCCCCEEEEECCCC--------CCCCCC----------CcceEEEEeccchHH
Confidence 999875 55 89999999999999999999999 554433 357899999999999
Q ss_pred hHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCC
Q psy581 195 PMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPP 274 (343)
Q Consensus 195 p~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 274 (343)
|+++|++++... .+++++|++++.+++...+++ + +++++++.+++.. .+..... +.......
T Consensus 134 p~~~il~~~~~~----~~~~~~~~~~~~~d~~~l~~~-------~-~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~ 195 (235)
T cd06193 134 AIAAILEELPAD----ARGTALIEVPDAADEQPLPAP-------A-GVEVTWLHRGGAE-----AGELALL-AVRALAPP 195 (235)
T ss_pred HHHHHHHhCCCC----CeEEEEEEECCHHHccccCCC-------C-CcEEEEEeCCCCC-----cchhHHH-HHhcccCC
Confidence 999999986542 589999999998765443321 1 4667666554332 1111111 12222223
Q ss_pred CCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh-CCCCCCceEe
Q psy581 275 SPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK-LGYSEKLRFS 342 (343)
Q Consensus 275 ~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~g~~~~~i~~ 342 (343)
.....+|+||| ++|++ +++..|.+ .|+++++|++
T Consensus 196 ~~~~~vyicGp---------------------------------~~mv~-~v~~~l~~~~g~~~~~i~~ 230 (235)
T cd06193 196 AGDGYVWIAGE---------------------------------AGAVR-ALRRHLREERGVPRAQVYA 230 (235)
T ss_pred CCCeEEEEEcc---------------------------------HHHHH-HHHHHHHHccCCCHHHEEE
Confidence 34679999999 99999 88888865 6999999986
No 59
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.96 E-value=2.9e-29 Score=224.20 Aligned_cols=238 Identities=25% Similarity=0.452 Sum_probs=199.3
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEee-----------------------------CCeeee
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATI-----------------------------NDEFVA 99 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~-----------------------------~g~~~~ 99 (343)
+..+++|++....+.-+..+.+..|+.. ...|+||-|++++++. ..+-..
T Consensus 133 kkWectViSNdN~ATFIKEL~laip~g~-~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~ 211 (410)
T COG2871 133 KKWECTVISNDNKATFIKELKLAIPEGE-EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPII 211 (410)
T ss_pred cceeEEEEeCCchhhhhhhheeeCCCCC-ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHH
Confidence 3456888888888888888999988764 4889999999999862 012366
Q ss_pred eeceeccCCCCCCeEEEEEEEEee-cCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCC
Q psy581 100 RAYTPVTSDEHHGYMDLVVKVYFK-NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTN 178 (343)
Q Consensus 100 R~yTi~s~~~~~~~l~~~Vk~~~~-~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~ 178 (343)
|.||+++-|++.+.+.|-||+-.+ ..+|..| .|.+|.|+-+|++||+|.|+||+| +|-..+
T Consensus 212 rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~P-pG~mSSyi~sLKpGDKvtisGPfG--------EfFaKd--------- 273 (410)
T COG2871 212 RAYSMASYPEEKGIIKLNVRIATPPPRNPDAP-PGQMSSYIWSLKPGDKVTISGPFG--------EFFAKD--------- 273 (410)
T ss_pred HHhhhhcChhhcCeEEEEEEeccCCCCCCCCC-ccceeeeEEeecCCCeEEEeccch--------hhhhcc---------
Confidence 999999999999999999998754 3344444 599999999999999999999999 443333
Q ss_pred CCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCC--CCCCc
Q psy581 179 LKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRP--EDGWK 256 (343)
Q Consensus 179 ~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~~ 256 (343)
..+++|||.||.|.+|+++.+-..+.+-.+.+++++.|++|+..+.+|.++++++++++|+ |++|.+++++ .++|+
T Consensus 274 -tdaemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pN-F~wH~aLSdplpEDnW~ 351 (410)
T COG2871 274 -TDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPN-FHWHLALSDPLPEDNWD 351 (410)
T ss_pred -CCCceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCC-cEEEEEecCCCCcCCcc
Confidence 4688999999999999999998887665567899999999999999999999999999995 9999999986 57899
Q ss_pred ccccccCHHHHHhhcCC--CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCC
Q psy581 257 YSTGFVSAEMIAEHLFP--PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLG 334 (343)
Q Consensus 257 ~~~g~~~~~~l~~~~~~--~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g 334 (343)
..+|.+........+.+ ..+++.+|+||| |-|.. ++.++|+.+|
T Consensus 352 g~TgFihnv~~en~Lk~h~aPEDceyYmCGP---------------------------------p~mNa-svikmL~dlG 397 (410)
T COG2871 352 GYTGFIHNVLYENYLKDHEAPEDCEYYMCGP---------------------------------PLMNA-SVIKMLKDLG 397 (410)
T ss_pred cchhHHHHHHHhhhhhcCCCchheeEEeeCc---------------------------------chhhH-HHHHHHHhcC
Confidence 99999987655544432 347899999999 88877 8899999999
Q ss_pred CCCCceE
Q psy581 335 YSEKLRF 341 (343)
Q Consensus 335 ~~~~~i~ 341 (343)
+.+++|.
T Consensus 398 VE~enIl 404 (410)
T COG2871 398 VERENIL 404 (410)
T ss_pred cccccee
Confidence 9999985
No 60
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=1e-28 Score=222.37 Aligned_cols=154 Identities=24% Similarity=0.387 Sum_probs=125.0
Q ss_pred EEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC----------------CeeeeeeceeccCCCCC---CeEEEE
Q psy581 57 EKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN----------------DEFVARAYTPVTSDEHH---GYMDLV 117 (343)
Q Consensus 57 ~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~----------------g~~~~R~yTi~s~~~~~---~~l~~~ 117 (343)
+++.+++++++|+|+.+.......|+||||+.|.++.. ++...|+|||+|.+.+. +.++|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 57889999999999998765568899999999998642 22457999999998653 789999
Q ss_pred EEEEeecCCCCCCCCCccchhhhcCC--C---CCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcc
Q psy581 118 VKVYFKNVHPKFPDGGKMSQFLENMK--V---GEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 192 (343)
Q Consensus 118 Vk~~~~~~~~~~~~~G~~S~~L~~l~--~---G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtG 192 (343)
||. .|.+|+||.++. . |+.|.++||+| .|.++. ......++++|||||+|
T Consensus 82 vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G--------~f~~~~------~~~~~~~~illIagG~G 136 (220)
T cd06197 82 VRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGG--------EFTLSL------PGEGAERKMVWIAGGVG 136 (220)
T ss_pred EEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCC--------cccCCc------ccccCCceEEEEecccc
Confidence 996 499999997643 3 99999999999 565442 00013578999999999
Q ss_pred hHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHH
Q psy581 193 ITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAA 235 (343)
Q Consensus 193 Iap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~ 235 (343)
|||++++++++........+++|+|++|+.+++++.+||.++.
T Consensus 137 ItP~~sil~~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~ 179 (220)
T cd06197 137 ITPFLAMLRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFP 179 (220)
T ss_pred hhhHHHHHHHHHhcccCCCcEEEEEEecchhhHHHHHHHHhcc
Confidence 9999999999886532357899999999999999999997754
No 61
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.96 E-value=2e-28 Score=226.61 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=158.2
Q ss_pred CCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhc
Q psy581 63 HDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN 141 (343)
Q Consensus 63 ~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~ 141 (343)
++++.|+|+.++ .....|+||||+.|.++ +....|+|||++.|++ .+.++|+||....+........|.+|.+|++
T Consensus 15 ~~v~~l~l~~~~-~~~~~~~pGQ~v~l~~~--~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~ 91 (267)
T cd06182 15 RSTRHLEFDLSG-NSVLKYQPGDHLGVIPP--NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAG 91 (267)
T ss_pred CceEEEEEecCC-CCcCccCCCCEEEEecC--CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhh
Confidence 358888998774 13478999999999875 3446899999998864 5899999997522110001123899999999
Q ss_pred CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC---CCCCccEEEEEe
Q psy581 142 MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFA 218 (343)
Q Consensus 142 l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~---~~~~~~v~li~~ 218 (343)
+++|+.|.+.||+|. .|.++. + ..+++|||||||||||+++++++++.. .....+++++|+
T Consensus 92 lk~Gd~v~v~~p~G~-------~f~l~~-~--------~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g 155 (267)
T cd06182 92 LQLGAKVTVFIRPAP-------SFRLPK-D--------PTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFG 155 (267)
T ss_pred CCCCCEEEEEEecCC-------cccCCC-C--------CCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEe
Confidence 999999999999994 465554 1 257899999999999999999998862 223568999999
Q ss_pred cCCc-hhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHH------HHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 219 NQSE-KDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAE------MIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 219 ~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+|+. ++++|.++|.++.+.++ ++++++++++.... ..|+++.. .+.+.+. ++..+|+|||
T Consensus 156 ~r~~~~d~~~~del~~~~~~~~-~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~---~~~~vyvCGp------ 222 (267)
T cd06182 156 CRNFASDYLYREELQEALKDGA-LTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN---EGAHIYVCGD------ 222 (267)
T ss_pred CCCCcccccHHHHHHHHHhCCC-cceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh---cCCEEEEECC------
Confidence 9999 99999999999988665 58898888875432 23444331 1222232 3458999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCc-chhhhhhhhHhhC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPP-MINFACKPNLDKL 333 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~ 333 (343)
+. |++ ++..+|.++
T Consensus 223 ---------------------------~~~m~~-~v~~~L~~~ 237 (267)
T cd06182 223 ---------------------------AKSMAK-DVEDALVKI 237 (267)
T ss_pred ---------------------------cccchH-HHHHHHHHH
Confidence 99 999 777888765
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=2.9e-26 Score=240.30 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=165.0
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|+++++++++++.|+|+.+.. ...++||||+.|+++..+ ..|||||++.+.+.+.++|+||. .
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~--~~~~~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~-----------v 66 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLI--AKSRKPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQE-----------V 66 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCch--hccCCCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEE-----------c
Confidence 57999999999999999987643 257899999999987555 36899999998878999999996 4
Q ss_pred CccchhhhcCCCCCeE-EEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCc
Q psy581 133 GKMSQFLENMKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 211 (343)
Q Consensus 133 G~~S~~L~~l~~G~~V-~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~ 211 (343)
|.+|++|+++++||.| .|+||+|+ +.... ..++++|||||+||||++++++++...+ .
T Consensus 67 G~~T~~L~~l~~Gd~v~~v~GP~G~--------~~~~~----------~~~~~llvaGG~GiaPl~~l~~~l~~~~---~ 125 (752)
T PRK12778 67 GLSTTKLCELNEGDYITDVVGPLGN--------PSEIE----------NYGTVVCAGGGVGVAPMLPIVKALKAAG---N 125 (752)
T ss_pred CchHHHHhcCCCCCEeCeEeCCCCC--------CccCC----------CCCeEEEEECCEeHHHHHHHHHHHHHCC---C
Confidence 9999999999999999 79999995 32222 1368999999999999999999988765 5
Q ss_pred cEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccc
Q psy581 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291 (343)
Q Consensus 212 ~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~ 291 (343)
+++++|++|+.+++++.++|.++..+ + .++. +++|.+..|++++ .+.+.+........+|+|||
T Consensus 126 ~v~l~~g~r~~~~l~~~~el~~~~~~----~--~~~t---~dg~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP------ 189 (752)
T PRK12778 126 RVITILGGRSKELIILEDEMRESSDE----V--IIMT---DDGSYGRKGLVTD-GLEEVIKRETKVDKVFAIGP------ 189 (752)
T ss_pred eEEEEeccCCHHHhhhHHHHHhhcCe----E--EEEE---CCCCCCCcccHHH-HHHHHhhcCCCCCEEEEECC------
Confidence 89999999999999999999987543 2 2222 2345567788876 45555433223457999999
Q ss_pred cccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 292 NNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 292 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
++|++ ++..+|++.|++
T Consensus 190 ---------------------------~~M~~-~v~~~l~~~gv~ 206 (752)
T PRK12778 190 ---------------------------AIMMK-FVCLLTKKYGIP 206 (752)
T ss_pred ---------------------------HHHHH-HHHHHHHHcCCC
Confidence 99999 788899988986
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.94 E-value=1.7e-25 Score=237.43 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=171.3
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
.+.+++|++++.++++++.|+|+.+.. ...++||||+.|.+..++. .||||+++.+.+.+.++|+||.
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~--~~~~~PGQFv~L~~~~~ge--~rP~SIas~~~~~g~i~l~Vk~-------- 714 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMV--ARSAQAGQFVRVLPWEKGE--LIPLTLADWDAEKGTIDLVVQG-------- 714 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCc--cccCCCCceEEEEeCCCCC--EEeEEccCCCCCCCEEEEEEEe--------
Confidence 578899999999999999999987653 3578999999999865553 5899999988777899999996
Q ss_pred CCCCCccchhhhcCCCCCeEE-EecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLENMKVGEPIN-VSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~-v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
.|.+|.+|+++++|+.|. |.||+|+ .|.++. ....++++|||||+||||++++++++...+
T Consensus 715 ---vG~~T~~L~~lk~Gd~l~~I~GPlG~-------~f~~~~--------~~~~~~vllIAGGiGIAPl~sl~r~l~~~g 776 (944)
T PRK12779 715 ---MGTSSLEINRMAIGDAFSGIAGPLGR-------ASELHR--------YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG 776 (944)
T ss_pred ---eccHHHHHhcCCCcCEEeeeecCCCC-------CcCCcc--------ccCCCcEEEEEccEeHHHHHHHHHHHHHCC
Confidence 488898899999999995 9999995 233321 001368999999999999999999987654
Q ss_pred CCCccEEEEEecCCchhhhhHHH---HHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCC---C--CCcE
Q psy581 208 TDNTKMSLIFANQSEKDILLREE---LEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPP---S--PDNL 279 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~e---l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~---~--~~~~ 279 (343)
.+++++|++|+.+++++.++ |++|++.+++.++++++.+ +++.+..|+++.. +.+.+... . ....
T Consensus 777 ---~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~ttd---dgs~G~~G~Vt~~-l~~ll~~~~~~~~~~~~~ 849 (944)
T PRK12779 777 ---NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTTN---DGSFGVKGFVTGP-LEEMLKANQQGKGRTIAE 849 (944)
T ss_pred ---CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEec---CCCCCCccccChH-HHHHHHhcccccccCCcE
Confidence 58999999999999888765 5667777776667665532 3455567888863 44333211 1 1357
Q ss_pred EEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCC
Q psy581 280 VLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSE 337 (343)
Q Consensus 280 i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 337 (343)
+|+||| ++||+ ++..+|++.|++.
T Consensus 850 Vy~CGP---------------------------------~~Mmk-av~~~l~~~Gv~~ 873 (944)
T PRK12779 850 VIAIGP---------------------------------PLMMR-AVSDLTKPYGVKT 873 (944)
T ss_pred EEEECC---------------------------------HHHHH-HHHHHHHHcCCCe
Confidence 999999 99999 8888999999986
No 64
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.93 E-value=9.1e-25 Score=194.83 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=119.5
Q ss_pred EEEEeC-CCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-CeeeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCC
Q psy581 57 EKIEIN-HDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-DEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 57 ~~~~i~-~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-g~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
..+.++ +++..++|+.+. ...|.||||+.|+++.. +.++.|+|||++.+.+ .+.++|+||.. +|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~---~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G 69 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPK---PFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KG 69 (210)
T ss_pred EEEEecCCCEEEEEEecCC---CCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CC
Confidence 345556 899999998764 36899999999999876 6678999999999876 58999999973 57
Q ss_pred ccchhhhcCC------CCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 134 KMSQFLENMK------VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 134 ~~S~~L~~l~------~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
.+++.+..+. .|++|.|+||+| .+..+. ...++++|||||+||||++++++++....
T Consensus 70 ~~t~~~~~~~~~~~~~~~~~v~v~GP~G--------~~~~~~---------~~~~~~vliagG~GItp~~s~l~~l~~~~ 132 (210)
T cd06186 70 FTTRLLRKALKSPGGGVSLKVLVEGPYG--------SSSEDL---------LSYDNVLLVAGGSGITFVLPILRDLLRRS 132 (210)
T ss_pred hHHHHHHHHHhCcCCCceeEEEEECCCC--------CCccCh---------hhCCeEEEEeccccHhhhHHHHHHHHhhh
Confidence 7777777776 899999999999 343111 13689999999999999999999988653
Q ss_pred C---CCccEEEEEecCCchh-hhhHHHHHH
Q psy581 208 T---DNTKMSLIFANQSEKD-ILLREELEE 233 (343)
Q Consensus 208 ~---~~~~v~li~~~r~~~~-~~~~~el~~ 233 (343)
. ...+++++|++|+.++ .+|.++|.+
T Consensus 133 ~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~ 162 (210)
T cd06186 133 SKTSRTRRVKLVWVVRDREDLEWFLDELRA 162 (210)
T ss_pred hccCCccEEEEEEEECCHHHhHHHHHHHHh
Confidence 1 2578999999999998 478898875
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=229.25 Aligned_cols=202 Identities=21% Similarity=0.360 Sum_probs=162.2
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG 132 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~ 132 (343)
++|+++++++++++.++|..|... ..++||||+.|+++..+ ..||||+++.+.+.+.++|.|+. .
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a--~~~~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~-----------v 66 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVA--ASAEPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQA-----------L 66 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcc--cCCCCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEe-----------c
Confidence 579999999999999999887643 67899999999986544 36899999988777899999996 5
Q ss_pred Cccchhh-hcCCCCCeE-EEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCC
Q psy581 133 GKMSQFL-ENMKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDN 210 (343)
Q Consensus 133 G~~S~~L-~~l~~G~~V-~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~ 210 (343)
|.+|+|| .++++||.| .+.||+|. .|.+.. .++++|||||+||||++++++++...+
T Consensus 67 G~~T~~L~~~lk~Gd~l~~v~GPlG~-------~~~~~~-----------~~~vllVaGGiGIAPl~s~~r~l~~~g--- 125 (1006)
T PRK12775 67 GKTTREMMTKFKAGDTFEDFVGPLGL-------PQHIDK-----------AGHVVLVGGGLGVAPVYPQLRAFKEAG--- 125 (1006)
T ss_pred CcHHHHHHhcCCCCCEEeeeecCCCC-------CCCCCC-----------CCeEEEEEEhHHHHHHHHHHHHHHhCC---
Confidence 8999998 689999999 79999994 232222 468999999999999999999987765
Q ss_pred ccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcccc
Q psy581 211 TKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTV 290 (343)
Q Consensus 211 ~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~ 290 (343)
.+++++|++|+.+++++.++|.++.. ++ +++.+ +++.+..|++++ .+.+.+.. .....+|+|||
T Consensus 126 ~~v~li~g~R~~~~l~~~del~~~~~----~~--~v~td---dgs~G~~G~vt~-~l~~~l~~-~~~d~vy~CGP----- 189 (1006)
T PRK12775 126 ARTTGIIGFRNKDLVFWEDKFGKYCD----DL--IVCTD---DGSYGKPGFVTA-ALKEVCEK-DKPDLVVAIGP----- 189 (1006)
T ss_pred CcEEEEEeCCChHHcccHHHHHhhcC----cE--EEEEC---CCCCCCCCChHH-HHHHHhcc-CCCCEEEEECC-----
Confidence 57999999999999999999987643 23 22222 335556788876 45555432 22457999999
Q ss_pred ccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCC
Q psy581 291 KNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGY 335 (343)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~ 335 (343)
+.||+ ++..++++.|+
T Consensus 190 ----------------------------~~Mm~-av~~~~~~~gi 205 (1006)
T PRK12775 190 ----------------------------LPMMN-ACVETTRPFGV 205 (1006)
T ss_pred ----------------------------HHHHH-HHHHHHHHCCC
Confidence 99999 77889999998
No 66
>PLN02292 ferric-chelate reductase
Probab=99.92 E-value=2.7e-23 Score=212.26 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=153.1
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCC-CCCeEEEEEEEEeecCCCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~~ 129 (343)
..+++++++.+++++.+++++.+.. ..++||||+.+.++..+.++.|||||++.+. +++.++|+||.
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~--------- 392 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM---LMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS--------- 392 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc---------
Confidence 4678999999999999999987643 5789999999999866678899999999874 56889999995
Q ss_pred CCCCccchhhh-cCCCCC-----eEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 130 PDGGKMSQFLE-NMKVGE-----PINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 130 ~~~G~~S~~L~-~l~~G~-----~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
.|.+|++|. .++.|| +|.++||||. +..+. ...+++++||||+||||++++++++
T Consensus 393 --~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~--------~~~~~---------~~~~~vvlIAGGiGITP~lsil~~L 453 (702)
T PLN02292 393 --QGKWSTKLYHMLSSSDQIDRLAVSVEGPYGP--------ASTDF---------LRHESLVMVSGGSGITPFISIIRDL 453 (702)
T ss_pred --CCchhHHHHHhCCCCCccccceEEEECCccC--------Ccccc---------ccCCcEEEEEeccCHHHHHHHHHHH
Confidence 588999995 578888 4689999994 32221 1357899999999999999999999
Q ss_pred HhCCCC----CccEEEEEecCCchhhhhHHHHHH-------HHHhCCCcEEEEEEecCCCCCC-cccccccCHHHHHhhc
Q psy581 204 TKDPTD----NTKMSLIFANQSEKDILLREELEE-------AAAKNPDQFKLWYTVDRPEDGW-KYSTGFVSAEMIAEHL 271 (343)
Q Consensus 204 ~~~~~~----~~~v~li~~~r~~~~~~~~~el~~-------l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~l~~~~ 271 (343)
.++... .++++++|++|+.+|+.+.+++.. ++++++ +++.++++++.+.. .+..| +.+++++..
T Consensus 454 ~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~~--~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~ 529 (702)
T PLN02292 454 IYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFID--IQIKAFVTREKEAGVKESTG--NMNIIKTLW 529 (702)
T ss_pred HhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcCC--ceEEEEEeCCCCCCCccccc--chhhhhhhc
Confidence 764311 268999999999999988765543 233443 55555555543321 33445 667787776
Q ss_pred CCCC--CCcEEEEeCC
Q psy581 272 FPPS--PDNLVLMCGP 285 (343)
Q Consensus 272 ~~~~--~~~~i~vCGp 285 (343)
+.+. +...+.+|||
T Consensus 530 ~~p~~~~~~~~~~~Gp 545 (702)
T PLN02292 530 FKPNLSDQPISPILGP 545 (702)
T ss_pred CCCCCCCCceEEEeCC
Confidence 6655 7899999999
No 67
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.91 E-value=7e-24 Score=205.89 Aligned_cols=186 Identities=19% Similarity=0.266 Sum_probs=141.7
Q ss_pred eeeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCC
Q psy581 96 EFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 174 (343)
Q Consensus 96 ~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~ 174 (343)
....|+|||+|+|.. ++.++|+|+++.+.........|.+|+||+++++|++|.+.+|.| .|.++. +
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g--------~F~lp~-~--- 228 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKS--------SFKLPK-D--- 228 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECC--------cccCCC-C---
Confidence 467899999999864 589999999875544333445799999999999999999999999 677664 1
Q ss_pred CCCCCCcceEEEEEcCcchHhHHHHHHHHHhC---CCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcEEEEEEecC
Q psy581 175 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQFKLWYTVDR 250 (343)
Q Consensus 175 ~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~---~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~ 250 (343)
...+++|||+||||||+++++++.... .....++.|+|++|+. .+++|.+||+++.++.+ .++++++.++
T Consensus 229 -----~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~~a~Sr 302 (382)
T cd06207 229 -----PKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGV-LTTLGTAFSR 302 (382)
T ss_pred -----CCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCC-CceEEEEecC
Confidence 247899999999999999999987532 2245789999999999 89999999999998766 3788888887
Q ss_pred CCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCc-chhhhhh
Q psy581 251 PEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPP-MINFACK 327 (343)
Q Consensus 251 ~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 327 (343)
++....|.+.++.+ +.+.+.+. .....+|+||| +. |++ .+.
T Consensus 303 d~~~~~yVq~~l~~~~~~~~~~l~--~~~~~vYvCG~---------------------------------~~~M~~-~V~ 346 (382)
T cd06207 303 DQPKKVYVQDLIRENSDLVYQLLE--EGAGVIYVCGS---------------------------------TWKMPP-DVQ 346 (382)
T ss_pred CCCCceEhHHHHHHCHHHHHHHHh--cCCCEEEEECC---------------------------------cccccH-HHH
Confidence 65433333443322 22333332 22358999999 87 998 777
Q ss_pred hhHhhCCC
Q psy581 328 PNLDKLGY 335 (343)
Q Consensus 328 ~~L~~~g~ 335 (343)
..|.+++.
T Consensus 347 ~~L~~~~~ 354 (382)
T cd06207 347 EAFEEILK 354 (382)
T ss_pred HHHHHHHH
Confidence 77766544
No 68
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.90 E-value=1.6e-23 Score=201.67 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=134.7
Q ss_pred CCCCCCCEEEEEEeeCCeeeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhc-CCCCCeEEEecCccc
Q psy581 79 LGLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGR 156 (343)
Q Consensus 79 ~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~ 156 (343)
..+.+||++.+..+ ...|+|||+|.|.. ++.++|+|++..+..+. ..+.|.+|.||++ +++|++|.+.+|.|.
T Consensus 130 ~~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~-~~~~G~~S~~L~~~~~~Gd~v~v~~~~~~ 204 (360)
T cd06199 130 ARLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHG-RERKGVASTFLADRLKEGDTVPVFVQPNP 204 (360)
T ss_pred CCCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCC-CccceehhHHHHhcCCCCCEEEEEEecCC
Confidence 56789999988743 36799999999864 57899999875433222 2346999999986 469999999985552
Q ss_pred eeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCc-hhhhhHHHHHHHH
Q psy581 157 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE-KDILLREELEEAA 235 (343)
Q Consensus 157 ~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~-~~~~~~~el~~l~ 235 (343)
.|.++. + ...+++|||+||||||+++++++..... ..++++++|++|+. .|++|.+||+++.
T Consensus 205 -------~F~lp~-~--------~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y~~el~~~~ 267 (360)
T cd06199 205 -------HFRLPE-D--------PDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLYQDELQQWL 267 (360)
T ss_pred -------CcCCCC-C--------CCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhHHHHHHHHH
Confidence 677765 1 2478999999999999999999976543 35789999999997 7999999999998
Q ss_pred HhCCCcEEEEEEecCCCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 236 AKNPDQFKLWYTVDRPEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
+.+. .++++.+++++.....|.++++.+ ..+.+.+ ..+..+|+|||
T Consensus 268 ~~~~-~~~~~~a~Sr~~~~~~yVq~~l~~~~~~~~~~~---~~~~~vYvCG~ 315 (360)
T cd06199 268 KDGV-LTRLDTAFSRDQAEKVYVQDRMREQGAELWAWL---EEGAHFYVCGD 315 (360)
T ss_pred HcCC-CeEEEEEEccCCCCCccHHHHHHHhHHHHHHHH---hCCCEEEEECC
Confidence 8766 488888888865433333333322 1122222 13578999999
No 69
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.90 E-value=2.8e-22 Score=204.28 Aligned_cols=166 Identities=22% Similarity=0.289 Sum_probs=121.9
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCC
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP 175 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~ 175 (343)
..|+|||+|+|.+ ++.++|+|++..+..+ ...+.|.+|.||.+ +++|++|.|.+|.|. .|.++. +
T Consensus 382 ~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~-------~F~lp~-~---- 448 (597)
T TIGR01931 382 TPRLYSISSSQSEVGDEVHLTVGVVRYQAH-GRARLGGASGFLAERLKEGDTVPVYIEPND-------NFRLPE-D---- 448 (597)
T ss_pred CCceeeeccCcccCCCEEEEEEEEEEecCC-CCccccchhHHHHhhCCCCCEEEEEEeeCC-------cccCCC-C----
Confidence 4699999999853 5789999987644322 23357999999976 999999999986653 687765 1
Q ss_pred CCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCC-chhhhhHHHHHHHHHhCCCcEEEEEEecCCCCC
Q psy581 176 PTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQS-EKDILLREELEEAAAKNPDQFKLWYTVDRPEDG 254 (343)
Q Consensus 176 ~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~-~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 254 (343)
...+++|||+||||||++++++++.... ...+++|+|++|+ .+|++|.+||+++.++... .++..+++++...
T Consensus 449 ----~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l-~~l~~afSRd~~~ 522 (597)
T TIGR01931 449 ----PDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVL-TKMDLAFSRDQAE 522 (597)
T ss_pred ----CCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCC-ceeEEEEecCCCC
Confidence 2468999999999999999999987654 4578999999999 7799999999999887653 5677777774332
Q ss_pred CcccccccCHH--HHHhhcCCCCCCcEEEEeC-C
Q psy581 255 WKYSTGFVSAE--MIAEHLFPPSPDNLVLMCG-P 285 (343)
Q Consensus 255 ~~~~~g~~~~~--~l~~~~~~~~~~~~i~vCG-p 285 (343)
..|.+.++.+. .+.+.+. .+..+|+|| |
T Consensus 523 k~yVqd~l~e~~~~~~~~l~---~~a~vYvCG~~ 553 (597)
T TIGR01931 523 KIYVQHRIREQGAELWQWLQ---EGAHIYVCGDA 553 (597)
T ss_pred CccHHHHHHHhHHHHHHHHh---CCcEEEEECCC
Confidence 22333333221 1112221 358899999 7
No 70
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.89 E-value=1.4e-22 Score=196.90 Aligned_cols=198 Identities=24% Similarity=0.316 Sum_probs=143.1
Q ss_pred CCCCCCEEEEEEeeCCeeeeeeceeccCCCC-CCeEEEEEEEEeecCC-CCCCCCCccchhhhcCCCCCeEEE--ecCcc
Q psy581 80 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVH-PKFPDGGKMSQFLENMKVGEPINV--SGPRG 155 (343)
Q Consensus 80 ~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~-~~~~~~G~~S~~L~~l~~G~~V~v--~GP~G 155 (343)
....||++.+.. ....|+|||+|++.. ++.++|+|++..+... .+....|.+|.||+++++|++|.+ ++|.|
T Consensus 146 ~~~~~~~l~~~p----~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g 221 (384)
T cd06206 146 ALPLATFLAMLP----PMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS 221 (384)
T ss_pred CCCHHHHHHhCc----ccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence 345788777763 246799999999854 5778888887643221 112347999999999999999985 58888
Q ss_pred ceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC---CCCCccEEEEEecCCc-hhhhhHHHH
Q psy581 156 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQSE-KDILLREEL 231 (343)
Q Consensus 156 ~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~---~~~~~~v~li~~~r~~-~~~~~~~el 231 (343)
.|.++. + ..++++|||+||||||+++++++.... +....+++|+|++|+. ++++|.+||
T Consensus 222 --------~F~l~~-~--------~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el 284 (384)
T cd06206 222 --------AFRPPS-D--------PSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDEL 284 (384)
T ss_pred --------ccCCCC-C--------CCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHH
Confidence 676654 1 257899999999999999999987532 2234689999999999 799999999
Q ss_pred HHHHHhCCCcEEEEEEecCCCCC-CcccccccCH--HHHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeec
Q psy581 232 EEAAAKNPDQFKLWYTVDRPEDG-WKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSE 308 (343)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~ 308 (343)
+++.+. + ++++++++++++.+ ..|.++++.+ +.+.+.+ ..+..+|+|||
T Consensus 285 ~~~~~~-~-~~~l~~a~Sr~~~~~~~yVq~~i~~~~~~~~~~~---~~~~~vyiCGp----------------------- 336 (384)
T cd06206 285 EEWEAA-G-VVSVRRAYSRPPGGGCRYVQDRLWAEREEVWELW---EQGARVYVCGD----------------------- 336 (384)
T ss_pred HHHHHC-C-CeEEEEEecccCCCCCEechhhHHhhHHHHHHHH---HCCcEEEEECC-----------------------
Confidence 999874 4 58999998876543 2233333322 1122222 24688999999
Q ss_pred cccccccCCCCcchhhhhhhhHhhCCCCC
Q psy581 309 FNKMKIHEGPPPMINFACKPNLDKLGYSE 337 (343)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 337 (343)
++|++ .+.+.|.+++...
T Consensus 337 ----------~~M~~-~v~~~L~~i~~~~ 354 (384)
T cd06206 337 ----------GRMAP-GVREVLKRIYAEK 354 (384)
T ss_pred ----------CchHH-HHHHHHHHHHHHh
Confidence 99998 7778887665543
No 71
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.88 E-value=8.5e-22 Score=193.11 Aligned_cols=169 Identities=20% Similarity=0.269 Sum_probs=126.7
Q ss_pred eeeeeeceeccCCC-CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCC---------------------CCCeEEEecC
Q psy581 96 EFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK---------------------VGEPINVSGP 153 (343)
Q Consensus 96 ~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~---------------------~G~~V~v~GP 153 (343)
....|.|||+|++. +++.++|+|++..+.........|.+|.||+++. +|+.|.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 36789999999985 4578999999875443222334599999998766 7999999999
Q ss_pred ccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC---CCCCccEEEEEecCCc-hhhhhHH
Q psy581 154 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQSE-KDILLRE 229 (343)
Q Consensus 154 ~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~---~~~~~~v~li~~~r~~-~~~~~~~ 229 (343)
.| .|.++. + ...+++|||+||||||+++++++.... +....+++|+|++|+. .+++|.+
T Consensus 255 ~g--------~F~lp~-~--------~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~ 317 (416)
T cd06204 255 RS--------NFRLPT-K--------PSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKD 317 (416)
T ss_pred cC--------CCCCCC-C--------CCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHH
Confidence 99 676664 1 247899999999999999999986421 2124689999999998 7999999
Q ss_pred HHHHHHHhCCCcEEEEEEecCCCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 230 ELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 230 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
||++|.+.++ ++++++++++++....|.++++.+ +.+.+.+. .+..+|+|||
T Consensus 318 el~~~~~~~~-~~~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~---~~~~vYvCGp 371 (416)
T cd06204 318 ELEEYAKLGG-LLELVTAFSREQPKKVYVQHRLAEHAEQVWELIN---EGAYIYVCGD 371 (416)
T ss_pred HHHHHHHcCC-ceEEEEEECcCCCCCcchHHHHHHhHHHHHHHHH---cCCEEEEECC
Confidence 9999988765 488988888765433444555532 12222222 3578999999
No 72
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.87 E-value=4.4e-22 Score=194.16 Aligned_cols=165 Identities=21% Similarity=0.305 Sum_probs=124.1
Q ss_pred eeeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhcCC-----CCCeEEEec-CccceeecCCCceeec
Q psy581 96 EFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK-----VGEPINVSG-PRGRLAYLGNGEFHIR 168 (343)
Q Consensus 96 ~~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~-----~G~~V~v~G-P~G~~~~~~~~~f~l~ 168 (343)
....|+|||+|+|.. ++.++|+|+++... ..|.+|.||+++. +|++|.+.+ |.| .|.++
T Consensus 171 ~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~------~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g--------~F~lp 236 (398)
T cd06203 171 RLQPRPYSIASSPLEGPGKLRFIFSVVEFP------AKGLCTSWLESLCLSASSHGVKVPFYLRSSS--------RFRLP 236 (398)
T ss_pred cCCCcceeecCCcccCCCeEEEEEEEEEec------CCChhhHHHHHhhhhhcCCCCEEEEEEecCC--------CcCCC
Confidence 357899999999865 58899999986111 1599999999887 999999999 566 67776
Q ss_pred cCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC-----CCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcE
Q psy581 169 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-----PTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQF 242 (343)
Q Consensus 169 ~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~-----~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~ 242 (343)
. + ....+++|||+||||||+++++++.... ....+++.|+|++|+. .|++|.+||+++.+.++. +
T Consensus 237 ~-~-------~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~-~ 307 (398)
T cd06203 237 P-D-------DLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGIL-T 307 (398)
T ss_pred C-c-------CCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCC-c
Confidence 5 1 0146899999999999999999987641 2235789999999999 799999999999987763 7
Q ss_pred EEEEEecCCCCCCcccccccCHHHHHhhcCC-----CCCCcEEEEeCC
Q psy581 243 KLWYTVDRPEDGWKYSTGFVSAEMIAEHLFP-----PSPDNLVLMCGP 285 (343)
Q Consensus 243 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-----~~~~~~i~vCGp 285 (343)
+++++++++++.+ +..++++.. +.+.... ...++.+|+|||
T Consensus 308 ~~~~a~SRd~~~~-g~k~yVqd~-l~~~~~~~~~~l~~~~~~iYvCG~ 353 (398)
T cd06203 308 RLIVAFSRDENDG-STPKYVQDK-LEERGKKLVDLLLNSNAKIYVCGD 353 (398)
T ss_pred eEEEEECCCCCCC-CCceecchH-HHhCHHHHHHHHhcCCcEEEEECC
Confidence 7888888865532 245666652 3221100 124688999999
No 73
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.86 E-value=3.8e-21 Score=187.92 Aligned_cols=166 Identities=21% Similarity=0.330 Sum_probs=122.1
Q ss_pred eeeeeceeccCCCC-CCeEEEEEEEEeecCC--CCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCC
Q psy581 97 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 173 (343)
Q Consensus 97 ~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~--~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~ 173 (343)
...|+|||+|+|.. ++.++|+|++...... ......|.+|+||+++++|++|.+.++.+. .|.++. +
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~-------~F~lp~-~-- 244 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAP-------SFHLPE-D-- 244 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCC-------ccCCCC-C--
Confidence 57899999999863 6788888877533211 111246999999999999999999886542 576664 1
Q ss_pred CCCCCCCcceEEEEEcCcchHhHHHHHHHHHh-------CCCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcEEEE
Q psy581 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITK-------DPTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQFKLW 245 (343)
Q Consensus 174 ~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~-------~~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~~~~ 245 (343)
...+++|||+||||||+++++++... .....+++.|+|++|+. .|.+|.+||+++.+... .++++
T Consensus 245 ------~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~~~ 317 (406)
T cd06202 245 ------PSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV-LTEVY 317 (406)
T ss_pred ------CCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC-CceEE
Confidence 24789999999999999999998532 11134789999999999 89999999999988765 37788
Q ss_pred EEecCCCCCCcccccccCHHHHHh-------hcCCCCCCcEEEEeCC
Q psy581 246 YTVDRPEDGWKYSTGFVSAEMIAE-------HLFPPSPDNLVLMCGP 285 (343)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~l~~-------~~~~~~~~~~i~vCGp 285 (343)
+++++++.. ..++++. .+.+ .+. ..++.+|+|||
T Consensus 318 ~a~SR~~~~---~k~yVq~-~l~~~~~~v~~~l~--~~~~~iYvCG~ 358 (406)
T cd06202 318 TALSREPGK---PKTYVQD-LLKEQAESVYDALV--REGGHIYVCGD 358 (406)
T ss_pred EEEcCCCCC---CCeehhh-HHHHhHHHHHHHHH--hCCCEEEEeCC
Confidence 888875432 2355544 2222 221 24689999999
No 74
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.86 E-value=2.7e-21 Score=196.46 Aligned_cols=181 Identities=19% Similarity=0.256 Sum_probs=136.6
Q ss_pred CCCCCCCEEEEEEeeCCeeeeeeceeccCCC-CCCeEEEEEEEEeecCCCCCCCCCccchhhh-cCCCCCeEEEecCccc
Q psy581 79 LGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGR 156 (343)
Q Consensus 79 ~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~ 156 (343)
..+.+||++.+..+ ...|+|||+|+|. .++.++|+|++..+..+ ...+.|.+|.||. .+++|++|.|.+|.|.
T Consensus 370 ~~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~-g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~ 444 (600)
T PRK10953 370 AQLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIE-GRARAGGASSFLADRLEEEGEVRVFIEHND 444 (600)
T ss_pred CCCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecC-CCCcCceEhhhhhhcCCCCCEEEEEeccCC
Confidence 35778898887754 3579999999985 35789999876543322 2235789999996 6999999999998863
Q ss_pred eeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCC-chhhhhHHHHHHHH
Q psy581 157 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQS-EKDILLREELEEAA 235 (343)
Q Consensus 157 ~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~-~~~~~~~~el~~l~ 235 (343)
.|.++. + ...+++|||+||||||+++++++..... ...+++|+|++|+ ..|++|.+||+++.
T Consensus 445 -------~F~lp~-~--------~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~~El~~~~ 507 (600)
T PRK10953 445 -------NFRLPA-N--------PETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQVEWQRYV 507 (600)
T ss_pred -------cccCCC-C--------CCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHHHHHHHHH
Confidence 687765 1 2478999999999999999999987654 4578999999998 67999999999999
Q ss_pred HhCCCcEEEEEEecCCCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 236 AKNPDQFKLWYTVDRPEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
+++.. .++....++.+....|.+.++.+ +.+.+.+ ..+..+||||+
T Consensus 508 ~~g~l-~~l~~afSRd~~~k~YVQ~~l~e~~~~l~~~l---~~ga~~YVCG~ 555 (600)
T PRK10953 508 KEGLL-TRIDLAWSRDQKEKIYVQDKLREQGAELWRWI---NDGAHIYVCGD 555 (600)
T ss_pred HcCCc-ceEEEEECCCCCCCCcHHHHHHHHHHHHHHHH---HCCcEEEEECC
Confidence 88652 45777788766544455555543 2333333 24689999999
No 75
>PLN02631 ferric-chelate reductase
Probab=99.85 E-value=2.9e-20 Score=189.78 Aligned_cols=168 Identities=15% Similarity=0.251 Sum_probs=133.5
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCC-CCCeEEEEEEEEeecCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
..++++.+.+++++.++++..+.. ..+.||||+.|+++..+.++.||||+++.|+ +++.++|+||.
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~~---~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~---------- 375 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTPG---LHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR---------- 375 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCCC---CcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc----------
Confidence 367788888899999999975443 6789999999999987778999999999874 45789999994
Q ss_pred CCCccchhhh-cCCC-CC--eEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC
Q psy581 131 DGGKMSQFLE-NMKV-GE--PINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 206 (343)
Q Consensus 131 ~~G~~S~~L~-~l~~-G~--~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~ 206 (343)
.|.+|++|. .++. |+ +|.++|||| .+..+. .+.+++|+||||+||||++++++++...
T Consensus 376 -~Gg~T~~L~~~l~~~g~~i~V~VeGPYG--------~~~~~~---------~~~~~vVlIAGGsGITP~lSiL~~ll~~ 437 (699)
T PLN02631 376 -QGSWTQKLYTHLSSSIDSLEVSTEGPYG--------PNSFDV---------SRHNSLILVSGGSGITPFISVIRELIFQ 437 (699)
T ss_pred -CChHHHHHHHhhhcCCCeeEEEEECCCC--------CCCCCc---------CCCCcEEEEEeCcChHhHHHHHHHHHhc
Confidence 689999995 4543 44 688999999 333221 1367899999999999999999999754
Q ss_pred CC----CCccEEEEEecCCchhhhhHHHHHHH------HHhCCCcEEEEEEecCCC
Q psy581 207 PT----DNTKMSLIFANQSEKDILLREELEEA------AAKNPDQFKLWYTVDRPE 252 (343)
Q Consensus 207 ~~----~~~~v~li~~~r~~~~~~~~~el~~l------~~~~~~~~~~~~~~~~~~ 252 (343)
.. ..++++|+|++|+.+|+.+.|||+.+ .++. ++++..++++++
T Consensus 438 ~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~~--ni~i~iyVTR~~ 491 (699)
T PLN02631 438 SQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISRL--NLRIEAYITRED 491 (699)
T ss_pred ccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhcC--ceEEEEEEcCCC
Confidence 21 12479999999999999999999863 2222 699999998853
No 76
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.85 E-value=7.2e-20 Score=187.79 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=139.2
Q ss_pred EEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCC-CCCeEEEEEEEEeecCCCCCCCCC
Q psy581 55 LKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGG 133 (343)
Q Consensus 55 v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~~~~~G 133 (343)
+++.+..++++.++++..+.. ..|+||||+.+.++..+.++.||||++|.+. +++.++|+||. .|
T Consensus 316 vvs~~~~~~~~v~l~i~r~~~---~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~-----------~g 381 (722)
T PLN02844 316 ILSARLFPCKAIELVLPKDPG---LKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC-----------EG 381 (722)
T ss_pred EEEEEEecCCEEEEEEECCCC---CCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe-----------CC
Confidence 455667788888888876433 6899999999999877778899999999764 45789999996 36
Q ss_pred ccchhhh-c----CCCC------CeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHH
Q psy581 134 KMSQFLE-N----MKVG------EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 202 (343)
Q Consensus 134 ~~S~~L~-~----l~~G------~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~ 202 (343)
+.|+.|. . ++.| .++.|+|||| .+..+. ...+++++||||+||||+++++++
T Consensus 382 G~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG--------~~s~~~---------~~~~~lVLIAGGiGITPfLSiLrd 444 (722)
T PLN02844 382 GWTNSLYNKIQAELDSETNQMNCIPVAIEGPYG--------PASVDF---------LRYDSLLLVAGGIGITPFLSILKE 444 (722)
T ss_pred CchHHHHHHHHhhccCCCCcccceEEEEECCcc--------CCCCCc---------cCCCeEEEEEcCcCHHHHHHHHHH
Confidence 6777663 2 3344 3799999999 443222 135889999999999999999999
Q ss_pred HHhCCC----CCccEEEEEecCCchhhhhHHHHHHH-----HHhCCCcEEEEEEecCCCCCCcccccccCHH----HHHh
Q psy581 203 ITKDPT----DNTKMSLIFANQSEKDILLREELEEA-----AAKNPDQFKLWYTVDRPEDGWKYSTGFVSAE----MIAE 269 (343)
Q Consensus 203 ~~~~~~----~~~~v~li~~~r~~~~~~~~~el~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~l~~ 269 (343)
+..... ...+++++|++|+.+|+.+.+++... .++. +++++++++++.... .++.+. .+.+
T Consensus 445 l~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~--~lkl~iyVTRE~~~~----~rl~~~i~~~~~~~ 518 (722)
T PLN02844 445 IASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQL--NLKLKVFVTQEEKPN----ATLRELLNQFSQVQ 518 (722)
T ss_pred HHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhc--CceEEEEECCCCCCC----CchhhHhhccchhh
Confidence 986431 13579999999999999999998632 2222 578888888865431 133321 1111
Q ss_pred hcCCCCCCcEEEEeCC
Q psy581 270 HLFPPSPDNLVLMCGP 285 (343)
Q Consensus 270 ~~~~~~~~~~i~vCGp 285 (343)
.+.-..+...+.+|||
T Consensus 519 ~~~~~~~~~~~~i~G~ 534 (722)
T PLN02844 519 TVNFSTKCSRYAIHGL 534 (722)
T ss_pred hcCCCCCCCceEEeCC
Confidence 1222345677999999
No 77
>PRK06214 sulfite reductase; Provisional
Probab=99.85 E-value=2.8e-20 Score=185.73 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=121.7
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCC
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP 175 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~ 175 (343)
..|+|||+|+|.. ++.++|+|++..+.. .+..+.|.+|+||+ ++++|++|.|.++.+. .|.++. +
T Consensus 315 ~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~-------gF~lp~-~---- 381 (530)
T PRK06214 315 QPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAH-------GFALPA-D---- 381 (530)
T ss_pred CcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCC-------CCccCC-C----
Confidence 5699999999863 688999998764332 22335799999996 7999999999764331 366654 1
Q ss_pred CCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCC-chhhhhHHHHHHHHHhCCCcEEEEEEecCCCCC
Q psy581 176 PTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQS-EKDILLREELEEAAAKNPDQFKLWYTVDRPEDG 254 (343)
Q Consensus 176 ~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~-~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 254 (343)
...++||||+||||||+++++++..... ...+++|+|++|+ ..|++|.+||+++.+.... +++++..+++...
T Consensus 382 ----~~~PiImIg~GTGIAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l-~~l~~afSRd~~~ 455 (530)
T PRK06214 382 ----PNTPIIMVGPGTGIAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFYEDELNGLKAAGVL-TRLSLAWSRDGEE 455 (530)
T ss_pred ----CCCCEEEEcCCeeHHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHHHHHHHHHHHhCCc-eEEEEEEecCCCC
Confidence 2468999999999999999999875433 3468999999965 6799999999999987653 6677777876554
Q ss_pred CcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 255 WKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 255 ~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
..|.++++.+ ..+.+.+ ..+..+|||||
T Consensus 456 k~YVQ~~L~e~~~~l~~~l---~~~a~iYVCGp 485 (530)
T PRK06214 456 KTYVQDRMRENGAELWKWL---EEGAHFYVCGD 485 (530)
T ss_pred CCchhhHHHHHHHHHHhhh---cCCcEEEEeCC
Confidence 4455555533 1222222 24689999999
No 78
>KOG3378|consensus
Probab=99.83 E-value=1.1e-20 Score=168.27 Aligned_cols=222 Identities=23% Similarity=0.265 Sum_probs=151.0
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCC-ccCCCCCCCEEEEEEeeCCe--eee--eeceeccCCCCCCeEEEEEEEEe
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAE-HVLGLPIGQHLSLSATINDE--FVA--RAYTPVTSDEHHGYMDLVVKVYF 122 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~-~~~~~~pGq~v~l~~~~~g~--~~~--R~yTi~s~~~~~~~l~~~Vk~~~ 122 (343)
+.|.+++|++.+..++++..+.+.+..+. +.....|||||.|....++. ... |.||.++.. -.+.+.|.||..
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t-~rN~~R~sVr~~- 224 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDT-CRNQFRISVRRV- 224 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhh-hccceeEEEeeh-
Confidence 47889999999999999999999987663 46678999999998776653 333 444444433 346799999986
Q ss_pred ecCCCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHH
Q psy581 123 KNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVR 201 (343)
Q Consensus 123 ~~~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~ 201 (343)
.+|.+|+|+| ++++||.|.++.|-| +|.+... ..+.+++++++|||+||||+++|++
T Consensus 225 --------A~G~VS~~~H~~~KVGD~v~~S~PAG--------~F~~~r~------~~~~N~PL~~~a~GiGiTPLi~iiE 282 (385)
T KOG3378|consen 225 --------AGGVVSNFVHDNLKVGDIVGVSPPAG--------NFVYKRS------EENVNRPLLCFAGGIGITPLIPIIE 282 (385)
T ss_pred --------hchhhHHHhhccccccceeeccCCCc--------cceeehh------hhccCCceEEecCCcCccccHHHHH
Confidence 7899999995 799999999999999 5554431 1234689999999999999999999
Q ss_pred HHHhCCCCCccEEEEEecCCch---hhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCc
Q psy581 202 HITKDPTDNTKMSLIFANQSEK---DILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDN 278 (343)
Q Consensus 202 ~~~~~~~~~~~v~li~~~r~~~---~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~ 278 (343)
..+.-. +.+++..+...-+.+ ..-..++|.+ ...+ .+=.+ ++. .....++++.+++.. ...+
T Consensus 283 ~~~~C~-~~RP~~~~~~~~~~K~k~~~K~~e~~~~---E~s~-~~~~I-V~~------~~~~iI~~~~L~~~~---~s~~ 347 (385)
T KOG3378|consen 283 TALLCY-SSRPFKQWLEQLKLKYKENLKLKEFFSE---ESSV-TKEQI-VDE------VMTRIINEEDLEKLD---LSEC 347 (385)
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHH---hhcc-chhhh-hhh------hhhhhcCHHHhhhcC---hhhC
Confidence 865422 122221111111111 0111112211 1110 11011 111 123456666776653 4679
Q ss_pred EEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 279 ~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|+||| ..+|+ ++.+.|.++|+..+.|++
T Consensus 348 DiY~~G~---------------------------------~~~M~-~~~~~L~~L~~~~~~v~~ 377 (385)
T KOG3378|consen 348 DIYMLGP---------------------------------NNYMR-FVKQELVKLGVEPNKVQS 377 (385)
T ss_pred ceeeeCc---------------------------------HHHHH-HHHHHHHHhcCCccceec
Confidence 9999999 99999 788999999999988864
No 79
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.82 E-value=1.8e-19 Score=141.65 Aligned_cols=98 Identities=33% Similarity=0.698 Sum_probs=88.8
Q ss_pred eEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCC
Q psy581 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD 131 (343)
Q Consensus 52 ~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~ 131 (343)
+++|+++++++++++.|+|+.++......|.||||+.|.++.++....|+|||++.+.+.+.++|+||.+ +
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~---------~ 71 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRY---------P 71 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEEC---------T
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEec---------c
Confidence 5899999999999999999998766668899999999999988888999999999998889999999997 7
Q ss_pred CCccchhhhcCCCCCeEEEecCcccee
Q psy581 132 GGKMSQFLENMKVGEPINVSGPRGRLA 158 (343)
Q Consensus 132 ~G~~S~~L~~l~~G~~V~v~GP~G~~~ 158 (343)
+|.+|+||+++++||+|.++||+|+|.
T Consensus 72 ~G~~S~~L~~l~~Gd~v~i~gP~G~f~ 98 (99)
T PF00970_consen 72 NGRVSRYLHQLKPGDEVEIRGPYGNFT 98 (99)
T ss_dssp TSHHHHHHHTSCTTSEEEEEEEESSEE
T ss_pred CCHHHHHHHhCCCCCEEEEEEcccccC
Confidence 899999999999999999999999543
No 80
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.80 E-value=7.6e-19 Score=176.56 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=136.9
Q ss_pred eeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhcCCC-CCeEEEecCccceeecCCCceeeccCCCCC
Q psy581 97 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GEPINVSGPRGRLAYLGNGEFHIRAVSKKD 174 (343)
Q Consensus 97 ~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~-G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~ 174 (343)
+..|.|||+|++.. ++.++++|.++.+..+.+ ...|.+|.||+.+.. |++|.|....++ +|.++. +
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~-~r~GvcS~~L~~~~~~g~~i~v~v~~n~-------nf~lp~-~--- 438 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR-ERYGVCSGYLADLLEEGDTIPVFVQPNK-------NFRLPE-D--- 438 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCC-cccccchHHHHhhhcCCCeEEEEeccCC-------ccccCC-C---
Confidence 46799999999875 478999999887776655 678999999987666 999999987775 788887 2
Q ss_pred CCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCC-chhhhhHHHHHHHHHhCCCcEEEEEEecCCCC
Q psy581 175 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQS-EKDILLREELEEAAAKNPDQFKLWYTVDRPED 253 (343)
Q Consensus 175 ~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~-~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~ 253 (343)
...+++||+.||||||+++++++...+. ..++++|||++|+ ..|++|.+|++++....- .+++..+.++++.
T Consensus 439 -----~~~PiIMIG~GTGIAPFRafvq~r~~~~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~-~~~l~~AfSRdq~ 511 (587)
T COG0369 439 -----PETPIIMIGPGTGIAPFRAFVQERAANG-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGV-LTRLDLAFSRDQE 511 (587)
T ss_pred -----CCCceEEEcCCCCchhHHHHHHHHHhcc-ccCceEEEecCCCCccchhhHHHHHHHHhcCC-ceeEEEEEeecCC
Confidence 2389999999999999999999988766 4558999999999 679999999999877643 3788888899887
Q ss_pred CCcccccccCH--HHHHhhcCCCCCCcEEEEeC-C
Q psy581 254 GWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCG-P 285 (343)
Q Consensus 254 ~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCG-p 285 (343)
...|.+-++.+ +.+.+.+. ++..+|||| .
T Consensus 512 ~KiYVQd~lre~~del~~~l~---~ga~~YVCGd~ 543 (587)
T COG0369 512 EKIYVQDRLREQADELWEWLE---EGAHIYVCGDA 543 (587)
T ss_pred CCccHHHHHHHhHHHHHHHHH---CCCEEEEeCCC
Confidence 77777777755 56666664 348999999 6
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.75 E-value=1.9e-18 Score=137.79 Aligned_cols=98 Identities=37% Similarity=0.743 Sum_probs=82.9
Q ss_pred EEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHH
Q psy581 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAE 265 (343)
Q Consensus 186 ~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 265 (343)
||||||||||++++++++.... ...+++|+|++|+.++++|.++|.++...++++++++.+ ++..+.+....|+++..
T Consensus 1 lIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~v~~~ 78 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLERN-DNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGRVTDL 78 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHHT-CTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESSHHHH
T ss_pred CeecceeHHHHHHHHHHHHHhC-CCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceeehhHH
Confidence 7999999999999999998763 568999999999999999999999999999877887766 66666777889999886
Q ss_pred HHHhhcC--CCCCCcEEEEeCC
Q psy581 266 MIAEHLF--PPSPDNLVLMCGP 285 (343)
Q Consensus 266 ~l~~~~~--~~~~~~~i~vCGp 285 (343)
.+.+.+. ....+..+|+|||
T Consensus 79 ~~~~~~~~~~~~~~~~v~iCGp 100 (109)
T PF00175_consen 79 LLEDLLPEKIDPDDTHVYICGP 100 (109)
T ss_dssp HHHHHHHHHHCTTTEEEEEEEE
T ss_pred HHHhhcccccCCCCCEEEEECC
Confidence 6555443 2346889999999
No 82
>KOG1158|consensus
Probab=99.69 E-value=2.5e-16 Score=158.59 Aligned_cols=171 Identities=24% Similarity=0.280 Sum_probs=123.0
Q ss_pred eeeeeeceeccCCC-CCCeEEEEEEEEeecCCCC-CCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCC
Q psy581 96 EFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPK-FPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 173 (343)
Q Consensus 96 ~~~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~~~~-~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~ 173 (343)
++.+|.|||+|++. .++.+.+++-+..+..... ..+.|.+|.||.++++|+.+..-+|.++. .|.++. |
T Consensus 419 ~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s------~frlp~-d-- 489 (645)
T KOG1158|consen 419 RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKS------MFRLPS-D-- 489 (645)
T ss_pred cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeeccc------ceecCC-C--
Confidence 47899999999875 3466777766543332211 22348999999999999988754455532 466665 1
Q ss_pred CCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC-----CCccEEEEEecCCchhh-hhHHHHHHHHHhCCCcEEEEEE
Q psy581 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT-----DNTKMSLIFANQSEKDI-LLREELEEAAAKNPDQFKLWYT 247 (343)
Q Consensus 174 ~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~-----~~~~v~li~~~r~~~~~-~~~~el~~l~~~~~~~~~~~~~ 247 (343)
...+++||+.||||||+++++++...... ... ++|+|+||+.++. +|.+|++++... +...++.+.
T Consensus 490 ------p~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~~l~~A 561 (645)
T KOG1158|consen 490 ------PSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILTRLDVA 561 (645)
T ss_pred ------CCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccchhheee
Confidence 35789999999999999999999864321 223 8999999998865 999999998544 334778888
Q ss_pred ecCCC-CCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 248 VDRPE-DGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 248 ~~~~~-~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
+++.+ ....|.+-++.+ +.+.+.+. .++.++||||+
T Consensus 562 ~SReq~~~k~YVQd~l~e~~d~v~~~L~--~~~g~iYvCGd 600 (645)
T KOG1158|consen 562 FSREQTPKKIYVQDRLREYADEVWELLK--KEGGHIYVCGD 600 (645)
T ss_pred eeccCCCCceehhhHHHHHHHHHHHHHh--cCCcEEEEecC
Confidence 99886 444455555433 45666664 24899999999
No 83
>KOG0039|consensus
Probab=99.68 E-value=9e-16 Score=157.49 Aligned_cols=167 Identities=16% Similarity=0.279 Sum_probs=126.2
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
...++.+...+..++..++++.|.. +.++||||++|.++.-..+++|||||+|+| +++++.++||.
T Consensus 355 ~~~~i~~~~llp~~vi~L~~~Kp~~---f~y~~Gqyifv~~p~ls~~qwHPFTItSsp-~dd~lsvhIk~---------- 420 (646)
T KOG0039|consen 355 KNVKIAKVVLLPSDVLELIMSKPPG---FKYKPGQYIFVNCPSLSKLEWHPFTITSAP-EDDFLSVHIKA---------- 420 (646)
T ss_pred cCceEEEEEEcCCCeEEEEEeCCCC---CCCCCCCEEEEECccccccccCCceeecCC-CCCEEEEEEEe----------
Confidence 3478999999999999999988743 889999999999998888999999999999 66899999995
Q ss_pred CCCccchhhhc-CC------------CCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHH
Q psy581 131 DGGKMSQFLEN-MK------------VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML 197 (343)
Q Consensus 131 ~~G~~S~~L~~-l~------------~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~ 197 (343)
.|++|+.|.+ +. ..-++.|+||||.- .-. -.+.+.+++|++|+|+||+.
T Consensus 421 -~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~------s~d-----------~~~~e~~vLV~~GiGvtPf~ 482 (646)
T KOG0039|consen 421 -LGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAP------SQD-----------VFKYEVLVLVGGGIGVTPFA 482 (646)
T ss_pred -cCcHHHHHHHHHhhhcccccccccccCceEEEECCCCCC------chh-----------hhhcceEEEEccCcccCccH
Confidence 6999998843 32 13479999999941 111 12467889999999999999
Q ss_pred HHHHHHHhCCC---------------CCccEEEEEecCCchhh-hhHHHHHHHHHhCCC-cEEEEEEec
Q psy581 198 QLVRHITKDPT---------------DNTKMSLIFANQSEKDI-LLREELEEAAAKNPD-QFKLWYTVD 249 (343)
Q Consensus 198 sll~~~~~~~~---------------~~~~v~li~~~r~~~~~-~~~~el~~l~~~~~~-~~~~~~~~~ 249 (343)
|+++++..+.. ...++.++|.+|...++ ++.+.+..+...... -.+++.+.+
T Consensus 483 sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t 551 (646)
T KOG0039|consen 483 SILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVT 551 (646)
T ss_pred HHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehh
Confidence 99999974321 23467899998887765 555555555433211 144555544
No 84
>KOG1159|consensus
Probab=99.56 E-value=1.9e-14 Score=137.71 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=122.7
Q ss_pred eeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCC
Q psy581 98 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 177 (343)
Q Consensus 98 ~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~ 177 (343)
..|.|||+|.+... .++++|-++.+.+-.+.++.|.+|+||++|++|+.|.+.--.| .+.++. +
T Consensus 367 rPR~fSIas~~~~~-~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g--------~l~~p~-~------ 430 (574)
T KOG1159|consen 367 RPRAFSIASSPGAH-HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPG--------TLYFPS-D------ 430 (574)
T ss_pred ccceeeeccCCCCC-ceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecC--------ccccCC-C------
Confidence 67999999998774 4999998888888889999999999999999999988887777 444443 1
Q ss_pred CCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCch-hhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCc
Q psy581 178 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEK-DILLREELEEAAAKNPDQFKLWYTVDRPEDGWK 256 (343)
Q Consensus 178 ~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (343)
-..+++||+-||||||+++++++..-.. .....+||+||+.+ |.+|.++...+.. ..++...+++++...
T Consensus 431 --~~~PlImVGPGTGvAPfRa~i~er~~q~--~~~~~lFfGCR~K~~Df~y~~eW~~~~~-----~~~~~AFSRDqe~kv 501 (574)
T KOG1159|consen 431 --LNKPLIMVGPGTGVAPFRALIQERIYQG--DKENVLFFGCRNKDKDFLYEDEWTELNK-----RAFHTAFSRDQEQKV 501 (574)
T ss_pred --CCCCeEEEcCCCCcccHHHHHHHHHhhc--cCCceEEEecccCCccccccchhhhhhc-----chhhhhcccccccce
Confidence 2578999999999999999999976433 23458999999876 7888877655433 445657788777666
Q ss_pred ccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 257 YSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 257 ~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
|.+-++.+ ..+.+++. ..+..+||||+
T Consensus 502 YVQh~i~e~g~~v~~Ll~--~~gA~~fvaGs 530 (574)
T KOG1159|consen 502 YVQHKIRENGEEVWDLLD--NLGAYFFVAGS 530 (574)
T ss_pred eHHHHHHHhhHHHHHHHh--ccCCEEEEecC
Confidence 65555443 23444443 35789999999
No 85
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.3e-12 Score=118.47 Aligned_cols=214 Identities=17% Similarity=0.253 Sum_probs=158.4
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCC-EEEEEEeeCCe--------------------eeeeeceecc
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQ-HLSLSATINDE--------------------FVARAYTPVT 106 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq-~v~l~~~~~g~--------------------~~~R~yTi~s 106 (343)
...+.++|+.+++++++..++.|..+.........+++ |+.|.++.++. ...|.|||..
T Consensus 15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~ 94 (265)
T COG2375 15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRA 94 (265)
T ss_pred ccceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeee
Confidence 35788999999999999999999988765443445555 99999986432 4589999998
Q ss_pred CCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEE
Q psy581 107 SDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 186 (343)
Q Consensus 107 ~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~ 186 (343)
.+.+.+.+.+-+-.+ +.+|.+|.|..+.++||+|.|.||.| .+..+. ..+.+++
T Consensus 95 ~d~~~~e~~vDfVlH--------~~~gpas~WA~~a~~GD~l~i~GP~g--------~~~p~~----------~~~~~lL 148 (265)
T COG2375 95 VDAAAGELDVDFVLH--------GEGGPASRWARTAQPGDTLTIMGPRG--------SLVPPE----------AADWYLL 148 (265)
T ss_pred ecccccEEEEEEEEc--------CCCCcchhhHhhCCCCCEEEEeCCCC--------CCCCCC----------CcceEEE
Confidence 887778877777664 25799999999999999999999999 443333 4789999
Q ss_pred EEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHH
Q psy581 187 IAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEM 266 (343)
Q Consensus 187 iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 266 (343)
++.-|++..+.++|+++... .+.+.+....+..+. ....++..+++........ .....
T Consensus 149 igDetAlPAIa~iLE~lp~~----~~~~a~lev~d~ad~--------~~l~~~~~l~~~Wl~r~~~---------~~~~l 207 (265)
T COG2375 149 IGDETALPAIARILETLPAD----TPAEAFLEVDDAADR--------DELPSPDDLELEWLARDDA---------PTEQL 207 (265)
T ss_pred eccccchHHHHHHHHhCCCC----CceEEEEEeCChHHh--------hccCCCCceeEEEecCCCc---------cchHH
Confidence 99999999999999987544 355777777777654 1222333577777654321 12222
Q ss_pred HHhhc---CCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhh-CCCCCCceEe
Q psy581 267 IAEHL---FPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDK-LGYSEKLRFS 342 (343)
Q Consensus 267 l~~~~---~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~g~~~~~i~~ 342 (343)
+...+ ..+.....+++.|- ..+++ ++++.|++ .|+++++|..
T Consensus 208 l~~a~~~~~~P~~~~~vwiagE---------------------------------~~~v~-~~Rk~L~~e~g~dk~~i~a 253 (265)
T COG2375 208 LAAALAQAALPAGDYYVWIAGE---------------------------------ASAVK-AIRKFLRNERGFDKSRVRA 253 (265)
T ss_pred HHHHHhcccCCCCceEEEEecc---------------------------------HHHHH-HHHHHHhhhcCCCHHHhhh
Confidence 22222 22334589999999 99999 88999965 5999988764
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.47 E-value=5.8e-13 Score=139.62 Aligned_cols=132 Identities=16% Similarity=0.281 Sum_probs=105.3
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC--e-eeeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND--E-FVARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g--~-~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
....++|++++.++++++.+++..|... ..++||||+.|+++..+ . ...||+|+++.+.+.+.++|+++..
T Consensus 789 ~~l~~~Vv~~~~lap~i~~L~l~aP~iA--~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvV---- 862 (1028)
T PRK06567 789 YLLTSRVNKINILDDKTFELIIHSPLAA--KNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEV---- 862 (1028)
T ss_pred hhhceEEEEEEEecCCEEEEEEeCcchh--hcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEE----
Confidence 4567899999999999999999877532 35789999999975333 2 2557999999988889999999974
Q ss_pred CCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 126 HPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
|..|+.|+++++||.|.|.||+|. .|.++. .+++++||||+|+|| +++++.+
T Consensus 863 -------GkgT~~Ls~l~~Gd~v~v~GPLG~-------pF~i~~-----------~k~vLLVgGGVGiAp---Lak~Lk~ 914 (1028)
T PRK06567 863 -------GKSTSLCKTLSENEKVVLMGPTGS-------PLEIPQ-----------NKKIVIVDFEVGNIG---LLKVLKE 914 (1028)
T ss_pred -------ChHHHHHhcCCCCCEEEEEcccCC-------CCCCCC-----------CCeEEEEEccccHHH---HHHHHHH
Confidence 999999999999999999999996 566543 468999999999997 5566554
Q ss_pred CCCCCccEEEEE
Q psy581 206 DPTDNTKMSLIF 217 (343)
Q Consensus 206 ~~~~~~~v~li~ 217 (343)
.+ .++..+.
T Consensus 915 ~G---~~V~~~~ 923 (1028)
T PRK06567 915 NN---NEVIFVT 923 (1028)
T ss_pred CC---CeEEEEE
Confidence 44 3444444
No 87
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.30 E-value=3e-12 Score=108.60 Aligned_cols=71 Identities=21% Similarity=0.487 Sum_probs=49.2
Q ss_pred cceEEEEEcCcchHhHHHHHHHHHhCC----CCCccEEEEEecCCchhh-hhHHHHHHHHHhCC-CcEEEEEEecCC
Q psy581 181 VTQLSMIAGGTGITPMLQLVRHITKDP----TDNTKMSLIFANQSEKDI-LLREELEEAAAKNP-DQFKLWYTVDRP 251 (343)
Q Consensus 181 ~~~vv~iA~GtGIap~~sll~~~~~~~----~~~~~v~li~~~r~~~~~-~~~~el~~l~~~~~-~~~~~~~~~~~~ 251 (343)
++.+||||||+||||++++++++.... ....+|+|+|.+|+.+++ ++.++|.++..... ..+++++++++.
T Consensus 1 y~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~ 77 (156)
T PF08030_consen 1 YDNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRE 77 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-
T ss_pred CCEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCC
Confidence 367999999999999999999996432 135789999999999987 55544444433222 258888888764
No 88
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=99.00 E-value=1.4e-09 Score=88.09 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=65.6
Q ss_pred EEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe---------------------eeeeeceeccCCCCCC
Q psy581 54 KLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE---------------------FVARAYTPVTSDEHHG 112 (343)
Q Consensus 54 ~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~---------------------~~~R~yTi~s~~~~~~ 112 (343)
+|++++.+++++++++|..++........+||++.|.++.++. ...|.||+...+.+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 5899999999999999998776555556899999999987553 2689999999988888
Q ss_pred eEEEEEEEEeecCCCCCCCC-CccchhhhcCCCCCeEEEecCcc
Q psy581 113 YMDLVVKVYFKNVHPKFPDG-GKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 113 ~l~~~Vk~~~~~~~~~~~~~-G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
.++|-+-.+ .+ |..++|+.++++||.|.|.||.|
T Consensus 81 ~l~iDfv~H---------g~~Gpas~WA~~A~pGd~v~v~gP~g 115 (117)
T PF08021_consen 81 ELDIDFVLH---------GDEGPASRWARSARPGDRVGVTGPRG 115 (117)
T ss_dssp EEEEEEE-----------SS--HHHHHHHH--TT-EEEEEEEE-
T ss_pred EEEEEEEEC---------CCCCchHHHHhhCCCCCEEEEeCCCC
Confidence 898888775 33 89999999999999999999998
No 89
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.96 E-value=8e-11 Score=93.58 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=5.8
Q ss_pred EEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC--eeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 53 ~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g--~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
.++.+++.+..++.++++..+... ..|+||||++|+++... .+++|||||++.+. .+.+.|+||.
T Consensus 4 ~~~~~v~~~~~~~v~i~i~~~~~~--~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~-~~~i~l~ik~---------- 70 (105)
T PF08022_consen 4 VRIASVELLPDDVVEITIPKPSSP--FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE-DNSITLIIKA---------- 70 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEEcCCCEEEEEEECCCCC--CCCCCceEEEEEEcCcCcCcccccccEeeccCC-CCEEEEEEEe----------
Confidence 467788889999999999866532 78999999999998777 45999999999887 5889999995
Q ss_pred CCCccchhhhcC--------CCCCeEEEecCcc
Q psy581 131 DGGKMSQFLENM--------KVGEPINVSGPRG 155 (343)
Q Consensus 131 ~~G~~S~~L~~l--------~~G~~V~v~GP~G 155 (343)
.|++|+.|.+. ..+-+|.|+||||
T Consensus 71 -~g~~T~~L~~~~~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 71 -RGGWTKRLYEHLSESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp ---------------------------TTSTTS
T ss_pred -CCCchHHHHHHHhhhcccCCCceEEEEECCCC
Confidence 58888888543 2345799999999
No 90
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=96.08 E-value=0.023 Score=45.98 Aligned_cols=110 Identities=13% Similarity=0.243 Sum_probs=66.6
Q ss_pred ceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccc
Q psy581 182 TQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGF 261 (343)
Q Consensus 182 ~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (343)
++++|++.-|++..+.++|+++.. ..+++++.-+.+.++...... +.+++++.+...... ..+.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp~----~~~~~v~iev~~~~d~~~l~~--------~~~~~v~wv~r~~~~----~~~~ 65 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALPA----DAPGTVFIEVPDEADRQPLPA--------PAGVEVTWVPRDGPA----AQGS 65 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-T----T-EEEEEEEESSGGG---------------TEEEEEEEE-SS------TT-H
T ss_pred ceEEEEeccccHHHHHHHHHhCCC----CCeEEEEEEECChHhcccCCC--------CCCCEEEEEeCCCCC----chHH
Confidence 578999999999999999998632 357888888888776443222 235888777654320 1111
Q ss_pred cCHHHHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHh-hCCCCCCce
Q psy581 262 VSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLD-KLGYSEKLR 340 (343)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~g~~~~~i 340 (343)
.-.+.+.+ +..+.....++++|- ..+++ .++..|. ++|+++++|
T Consensus 66 ~l~~al~~-~~~~~~~~~vW~AgE---------------------------------~~~~r-~lR~~l~~~~g~~~~~~ 110 (119)
T PF04954_consen 66 ALADALRD-LPLPAGDGYVWVAGE---------------------------------ASAVR-ALRRHLREERGLPRDRI 110 (119)
T ss_dssp HHHHHHTT-S---SS-EEEEEEEE---------------------------------HHHHH-HHHHHHHHH----GGGE
T ss_pred HHHHHHHH-hhccCCCeEEEEEec---------------------------------HHHHH-HHHHHHHHhhCCCHHHe
Confidence 22222333 233356899999999 99999 7888886 789999998
Q ss_pred Ee
Q psy581 341 FS 342 (343)
Q Consensus 341 ~~ 342 (343)
+.
T Consensus 111 ~~ 112 (119)
T PF04954_consen 111 YA 112 (119)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 91
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=80.53 E-value=1.3 Score=39.51 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=27.2
Q ss_pred CCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEE
Q psy581 46 DPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSA 91 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~ 91 (343)
+....+.++|++++.+++ +++.|+|+..+. ...|+||+++.|..
T Consensus 4 ~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~--~l~Y~pGD~l~V~P 52 (219)
T PF00667_consen 4 SRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDS--GLSYQPGDHLGVYP 52 (219)
T ss_dssp BTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS--TG---TT-EEEEE-
T ss_pred CCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC--CCcccCCCEEEEEc
Confidence 455678889999998877 278888887654 37788999888853
No 92
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=68.42 E-value=42 Score=32.18 Aligned_cols=88 Identities=16% Similarity=0.256 Sum_probs=56.3
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEE------EeeCCe------eeeeeceeccCCCCCCeE
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLS------ATINDE------FVARAYTPVTSDEHHGYM 114 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~------~~~~g~------~~~R~yTi~s~~~~~~~l 114 (343)
+-.-.+++|++++.+.-+-+...=+. ..+.+|+=..|- +....+ ..+|||-+ +.|-+
T Consensus 164 ~l~L~~a~Vt~V~~vG~GdRVCVDtc------sll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRV-----NAGaV 232 (344)
T PRK02290 164 KLELVPATVTRVEPVGMGDRVCVDTC------SLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRV-----NAGAV 232 (344)
T ss_pred cceeEEEEEEEEEEcCCccEEEEEcc------ccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeE-----ecCcc
Confidence 44567899999999988776543222 122344332221 111111 23344444 23668
Q ss_pred EEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 115 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 115 ~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
.-|++. .|..|+||..|+.|++|.+..-.|+
T Consensus 233 haYv~~-----------pgg~T~YLsEL~sG~eVlvVd~~G~ 263 (344)
T PRK02290 233 HAYVRV-----------PGDKTRYLSELRSGDEVLVVDADGN 263 (344)
T ss_pred eeEEEc-----------CCCcchhhHhhcCCCEEEEEeCCCC
Confidence 888884 5889999999999999999998883
No 93
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=67.32 E-value=41 Score=32.36 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=55.6
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEE------EEeeCCe------eeeeeceeccCCCCCCeE
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSL------SATINDE------FVARAYTPVTSDEHHGYM 114 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l------~~~~~g~------~~~R~yTi~s~~~~~~~l 114 (343)
.-...+++|++++.+.-+-+...=+. ..+.+|+=..| -+....+ ...|||-+ +.|-+
T Consensus 174 ~l~L~~a~Vt~V~~vGmGdRVCVDtc------sll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRV-----NAGaV 242 (354)
T PF01959_consen 174 KLELVPATVTRVEPVGMGDRVCVDTC------SLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRV-----NAGAV 242 (354)
T ss_pred cceeEEEEEEEEEEcCCccEEEEEcc------ccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceE-----ecCcc
Confidence 34567899999999987765443221 12233332221 1111112 33444444 23668
Q ss_pred EEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 115 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 115 ~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
.-|+.. .|.-|+||..|+.|++|.+....|.
T Consensus 243 HaYv~~-----------pg~kT~YLSEL~sG~~VlvVd~~G~ 273 (354)
T PF01959_consen 243 HAYVLM-----------PGGKTRYLSELRSGDEVLVVDADGR 273 (354)
T ss_pred eeEEEc-----------CCCceeehhhhcCCCEEEEEeCCCC
Confidence 888884 5889999999999999999998883
No 94
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=58.81 E-value=23 Score=31.47 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=13.6
Q ss_pred Cccchhhh--cCCCCCeEEEecCc
Q psy581 133 GKMSQFLE--NMKVGEPINVSGPR 154 (343)
Q Consensus 133 G~~S~~L~--~l~~G~~V~v~GP~ 154 (343)
-.+.+.|+ .+.....|.+..-.
T Consensus 57 ~~V~~~l~~lgl~~d~~v~~~~~~ 80 (219)
T PF00667_consen 57 EEVERLLKRLGLDPDEPVTLKPKE 80 (219)
T ss_dssp HHHHHHHHHHTSGTTSEEEEEESS
T ss_pred HHHHHHHHHhCCCcceEEEEEecc
Confidence 45667775 45556667777644
No 95
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=57.88 E-value=26 Score=28.43 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeecccc
Q psy581 232 EEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNK 311 (343)
Q Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~ 311 (343)
-....++|.++++.-+- -.|+++...+.+.+....+...+.-|.|.. +-+.+... ..
T Consensus 19 g~~~~~~p~~vriIrvp---------C~Grv~~~~il~Af~~GADGV~V~gC~~g~---------Ch~~~Gn~----~a- 75 (124)
T PF02662_consen 19 GVSRLQYPPNVRIIRVP---------CSGRVDPEFILRAFEKGADGVLVAGCHPGD---------CHYREGNY----RA- 75 (124)
T ss_pred hhccCCCCCCeEEEEcc---------CCCccCHHHHHHHHHcCCCEEEEeCCCCCC---------CCcchhhH----HH-
Confidence 33445677777766543 358899888887776544555555677611 11111100 00
Q ss_pred ccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 312 MKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
..-++ .+++.|+++|++.+||..
T Consensus 76 -------~~Rv~-~~k~~L~~~Gi~~eRv~~ 98 (124)
T PF02662_consen 76 -------EKRVE-RLKKLLEELGIEPERVRL 98 (124)
T ss_pred -------HHHHH-HHHHHHHHcCCChhHeEE
Confidence 23344 567788889999888865
No 96
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=57.57 E-value=45 Score=31.25 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=52.6
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEE----EEEEeeC--CeeeeeeceeccCCCCCCeEEEEEEEEee
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHL----SLSATIN--DEFVARAYTPVTSDEHHGYMDLVVKVYFK 123 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v----~l~~~~~--g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~ 123 (343)
...++|+.++.+...-+.+.=+..--..-..+..|.+- .|..... .=...|||-+ +.|.+.-+|++
T Consensus 199 L~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRV-----NAG~VhaYi~v--- 270 (376)
T COG1465 199 LVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRV-----NAGAVHAYIRV--- 270 (376)
T ss_pred EEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceee-----cccceeEEEEc---
Confidence 35688999999988765443221100000112233221 2221111 1134455544 23678999996
Q ss_pred cCCCCCCCCCccchhhhcCCCCCeEEEecCcc
Q psy581 124 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 124 ~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
.|.-|+||+.|+.||.|.|----|
T Consensus 271 --------Pg~kTkYLaEL~aGDeV~iVD~dG 294 (376)
T COG1465 271 --------PGGKTKYLAELKAGDEVLIVDFDG 294 (376)
T ss_pred --------CCCceEEhhhhcCCCeEEEEecCC
Confidence 578999999999999999887666
No 97
>KOG1611|consensus
Probab=56.46 E-value=38 Score=30.71 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=35.6
Q ss_pred EEEEcCc-chHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEE
Q psy581 185 SMIAGGT-GITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWY 246 (343)
Q Consensus 185 v~iA~Gt-GIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~ 246 (343)
+||+|+. ||. +++++++++.. .-.+++..+|+.+.. ..|++.+...++ |+++.-
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~~---~i~~iiat~r~~e~a--~~~l~~k~~~d~-rvHii~ 60 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKDK---GIEVIIATARDPEKA--ATELALKSKSDS-RVHIIQ 60 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcCC---CcEEEEEecCChHHh--hHHHHHhhccCC-ceEEEE
Confidence 5666654 665 56888887654 455677888877765 566777666666 466543
No 98
>PRK00036 primosomal replication protein N; Reviewed
Probab=51.50 E-value=22 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.9
Q ss_pred CeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCcc
Q psy581 112 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 112 ~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
..+.+.|.+. -.|..+..+.++++|..+.+.|-..
T Consensus 43 Rqv~~~i~av---------a~G~~a~~~~~l~~Gs~v~v~GFLa 77 (107)
T PRK00036 43 RRVELTISAV---------ALGDLALLLADTPLGTEMQVQGFLA 77 (107)
T ss_pred ceEEEEEEEE---------EEhhHHHHhcccCCCCEEEEEEEEE
Confidence 4456666554 4688999999999999999999554
No 99
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=48.02 E-value=25 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=12.5
Q ss_pred cccccccCCCceEeEEEEEEEEeC
Q psy581 39 KELKTLVDPDVKVPLKLKEKIEIN 62 (343)
Q Consensus 39 ~~~~~~~~p~~~~~~~v~~~~~i~ 62 (343)
.-......|.....++|++|+...
T Consensus 25 ~~~~n~~aP~~sv~a~Vv~Kr~~~ 48 (110)
T PF10694_consen 25 QWAKNNNAPVRSVPATVVDKRTEV 48 (110)
T ss_dssp ---------EEEEEEEEEEEEEEE
T ss_pred HHHhcCCCCcEEEEEEEEEeEeEE
Confidence 344556778888899999998663
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=46.92 E-value=12 Score=30.44 Aligned_cols=19 Identities=16% Similarity=-0.064 Sum_probs=9.3
Q ss_pred CCceehhhhHHHHHHHHHH
Q psy581 2 VPSILVGVGLIVVVGFIIS 20 (343)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (343)
.|.+..++.++|++++...
T Consensus 63 ~~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHH
Confidence 3455555555555554433
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=45.54 E-value=33 Score=32.90 Aligned_cols=25 Identities=24% Similarity=0.620 Sum_probs=21.6
Q ss_pred ceEEEEEcCcc--hHhHHHHHHHHHhC
Q psy581 182 TQLSMIAGGTG--ITPMLQLVRHITKD 206 (343)
Q Consensus 182 ~~vv~iA~GtG--Iap~~sll~~~~~~ 206 (343)
+++++.||||| |.|.+++++++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 35999999997 99999999998753
No 102
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=43.98 E-value=22 Score=23.62 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHhhhhhccccc
Q psy581 8 GVGLIVVVGFIISAIQESKSKKKD 31 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (343)
++++++..++.++.++|.+++|++
T Consensus 12 ~~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 12 SIGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHcccch
Confidence 345555555555556667765333
No 103
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=38.70 E-value=2.5e+02 Score=27.58 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCceEeEEEEEEEE-eC--CCEEEEEEECCCCCccCCCCCCCEEEEEEee
Q psy581 47 PDVKVPLKLKEKIE-IN--HDTRCFRFELPSAEHVLGLPIGQHLSLSATI 93 (343)
Q Consensus 47 p~~~~~~~v~~~~~-i~--~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~ 93 (343)
|...+.++|..+.. ++ ..++.+++..+... ..++||+|+.+.+..
T Consensus 274 ~~~~~~g~v~~i~p~vd~~trt~~vrv~l~N~~--~~L~pGm~v~v~i~~ 321 (409)
T PRK09783 274 PDKTFTIRKWTLLPSVDAATRTLQLRLEVDNAD--EALKPGMNAWLQLNT 321 (409)
T ss_pred CCCEEEEEEEEEccccCCCCcEEEEEEEEeCCC--CccCCCCEEEEEEec
Confidence 55566777776654 33 34556666665543 457899999999864
No 104
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=37.27 E-value=66 Score=27.03 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 80 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 80 ~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
.+..|..|.+.....+ ....|+++..... +.-...|- ...+..+.|-..++||.|.+..|.|.
T Consensus 85 ~V~~Gs~V~l~~~~~~--~~~~~~lvg~~e~-d~~~~~IS-----------~~SPlG~aLlGk~~Gd~v~~~~p~g~ 147 (157)
T PRK00226 85 KVKFGSTVTLKDLDTD--EEETYQIVGSDEA-DPKQGKIS-----------IESPIARALIGKKVGDTVEVTTPGGE 147 (157)
T ss_pred EEecCCEEEEEECCCC--CEEEEEEEChhhc-CccCCeec-----------cCChHHHHHhCCCCCCEEEEEcCCCc
Confidence 3457888888754333 3567888753322 21112222 35778888989999999999999994
No 105
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=36.15 E-value=51 Score=24.04 Aligned_cols=59 Identities=27% Similarity=0.427 Sum_probs=38.5
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCC---CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~---~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
...|..|.+.....+ ..+.|++..... +.+ .|- ...+..+.|-..++||.|.+..|.|.
T Consensus 6 V~~Gs~V~l~~~~~~--~~~~~~lv~~~~~~~~~~----~IS-----------~~SPLG~ALlG~~~Gd~v~~~~~~g~ 67 (77)
T PF01272_consen 6 VTIGSTVTLKDLDDG--EEETYTLVGPDEADPDNG----KIS-----------IDSPLGKALLGKKVGDEVEVELPGGE 67 (77)
T ss_dssp -STTEEEEEEETTTT--EEEEEEEE-GGG-BSTST----EEE-----------TTSHHHHHHTT-BTT-EEEEEETTBE
T ss_pred EEeCCEEEEEECCCC--CEEEEEEEeEhHhCCcee----EEE-----------ecCHHHHHhcCCCCCCEEEEEeCCce
Confidence 458888888764444 456777765322 223 222 46788888988999999999999994
No 106
>PRK06214 sulfite reductase; Provisional
Probab=32.83 E-value=76 Score=32.47 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=38.1
Q ss_pred cCCCceEeEEEEEEEEeCCC-----EEEEEEECCCCCccCCCCCCCEEEEEEeeCC
Q psy581 45 VDPDVKVPLKLKEKIEINHD-----TRCFRFELPSAEHVLGLPIGQHLSLSATIND 95 (343)
Q Consensus 45 ~~p~~~~~~~v~~~~~i~~~-----~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g 95 (343)
.+....+.++|++++.+++. ++.|+|++.+. .+.|+||+++.|...++.
T Consensus 163 ~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~--~l~Y~~GD~l~V~P~N~~ 216 (530)
T PRK06214 163 TSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGS--GLDYEVGDSLGLFPANDP 216 (530)
T ss_pred cCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCC--CCccCCCCEEEEeccCCH
Confidence 34556678999999999863 88899987643 278999999999887543
No 107
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=28.96 E-value=21 Score=30.02 Aligned_cols=9 Identities=44% Similarity=0.730 Sum_probs=4.6
Q ss_pred ehhhhHHHH
Q psy581 6 LVGVGLIVV 14 (343)
Q Consensus 6 ~~~~~~~~~ 14 (343)
++|+|..++
T Consensus 55 VVGVGg~il 63 (154)
T PF04478_consen 55 VVGVGGPIL 63 (154)
T ss_pred EecccHHHH
Confidence 456655444
No 108
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=28.86 E-value=1.2e+02 Score=25.05 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=39.6
Q ss_pred CCCCEEEEEEeeCCeeeeeeceeccCCC---CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 82 PIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 82 ~pGq~v~l~~~~~g~~~~R~yTi~s~~~---~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
..|..|.+.....+ ..+.|+++...+ ..+.+. -..++.+.|-..++||.|.+..|.|.
T Consensus 56 ~~Gs~V~~~~~~~~--~~~~~~iVg~~Ead~~~~~IS---------------i~SPlG~ALlG~~~Gd~v~v~~p~G~ 116 (137)
T PRK05753 56 TMNSRVRFRDLSSG--EERVRTLVYPADADDSEGQLS---------------VLAPVGAALLGLSVGQSIDWPLPGGK 116 (137)
T ss_pred EeCCEEEEEECCCC--CEEEEEEEChhHcCccCCcCc---------------ccCHHHHHHcCCCCCCEEEEECCCCC
Confidence 35677777654344 567888886432 223222 23677788888999999999999993
No 109
>KOG1159|consensus
Probab=28.54 E-value=39 Score=33.98 Aligned_cols=64 Identities=28% Similarity=0.441 Sum_probs=47.3
Q ss_pred ccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccC
Q psy581 42 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTS 107 (343)
Q Consensus 42 ~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~ 107 (343)
...+.|+...++++++++.+|+ +++.|+|+.++. ...|.||+.+.|...+.++-+.|......-
T Consensus 188 ~~v~~~~~~~~~k~~~N~rlT~~~HfQDVR~~~F~i~~s--~~~~epGDvl~l~P~N~de~V~~Fie~~gl 256 (574)
T KOG1159|consen 188 DIVLEPQGQIPAKLVENRRLTSADHFQDVRLFEFDIPDS--YEEFEPGDVLSLLPSNSDETVQRFIEYLGL 256 (574)
T ss_pred hhhhccccccccchhcceeecCcchhheeeEEEEecCCc--cccccCCCEEEEecCCchHHHHHHHHHcCC
Confidence 3456677788899999998876 489999998873 378999999999876655444444444443
No 110
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=28.38 E-value=2.5e+02 Score=20.87 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=47.7
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
..++|.+++... +..+++++.|+. ....+..|+.+.+ +|. ..|+.... .+.|.|.+-
T Consensus 6 ~~g~I~~i~~~~-~~~~~~i~~~~~-~~~~~~~g~SIav----nGv----cLTV~~~~--~~~f~~~l~----------- 62 (85)
T PF00677_consen 6 GTGKIISIEKNG-DSQRLRIEIPDK-ILSDLKIGGSIAV----NGV----CLTVTDIN--EDWFEVDLI----------- 62 (85)
T ss_dssp EEEEEEEEEEES-SEEEEEEEESTG-GGGTG-TTSEEEE----TTE----EEEEEEEE--TTEEEEEEE-----------
T ss_pred EEEEEEEEEECC-CCEEEEEEcCHH-HHhhCccCcEEEE----CCe----eeEEEEec--CCEEEEech-----------
Confidence 356778877764 467888887743 3356888987665 452 44555544 255666664
Q ss_pred CCCccchhhhcCCCCCeEEEe
Q psy581 131 DGGKMSQFLENMKVGEPINVS 151 (343)
Q Consensus 131 ~~G~~S~~L~~l~~G~~V~v~ 151 (343)
+.-.....|..+++|+.|.++
T Consensus 63 ~eTl~~T~l~~~~~G~~VNlE 83 (85)
T PF00677_consen 63 PETLRRTTLGNLKVGDRVNLE 83 (85)
T ss_dssp HHHHHCSSGGG--TTSEEEEE
T ss_pred HHHhhhchhccCCCCCEEEEe
Confidence 223334457889999999875
No 111
>PF11325 DUF3127: Domain of unknown function (DUF3127); InterPro: IPR021474 This bacterial family of proteins has no known function.
Probab=27.86 E-value=1.5e+02 Score=22.30 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe-eeeeece
Q psy581 63 HDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE-FVARAYT 103 (343)
Q Consensus 63 ~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~-~~~R~yT 103 (343)
|....|.|.-.......++.+|+.|.|.+...++ +..|.|+
T Consensus 35 P~~i~f~~~~dk~~~l~~~~~Gd~V~Vsf~i~~RE~~gr~fn 76 (84)
T PF11325_consen 35 PQKICFEFWGDKIDLLDNFQVGDEVKVSFNIEGREWNGRWFN 76 (84)
T ss_pred CceEEEEEEcchhhhhccCCCCCEEEEEEEeeccEecceEee
Confidence 3456677765444444689999999999986662 4444443
No 112
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=26.30 E-value=1.9e+02 Score=24.37 Aligned_cols=58 Identities=21% Similarity=0.453 Sum_probs=39.8
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCC---CCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSD---EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~---~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
+..|..|.|.- ..+ ....|+++... ...+.+.+ ..++.+.|-..++||+|.+..|.|.
T Consensus 86 V~~Gs~V~l~d-~~~--~~~~~~iVgp~e~d~~~~~IS~---------------~SPlG~ALlGk~vGd~v~v~~p~g~ 146 (157)
T PRK01885 86 VFFGAWVEIEN-EDG--EEKRFRIVGPDEIDGRKGYISI---------------DSPMARALLKKEVGDEVTVNTPAGE 146 (157)
T ss_pred EEeCCEEEEEE-CCC--CEEEEEEEChHHhCcCCCeEec---------------cCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 45778888765 344 35578776532 22233322 3778888989999999999999994
No 113
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=26.18 E-value=4.2e+02 Score=25.09 Aligned_cols=58 Identities=12% Similarity=0.231 Sum_probs=40.6
Q ss_pred eEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcE
Q psy581 183 QLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQF 242 (343)
Q Consensus 183 ~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~ 242 (343)
+++++++|...-.++.++.++.... ...++++.-+...-.-.+.+.+.+|...+...+
T Consensus 2 ~~~vv~~g~~~~~~~~~lkSil~~n--~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i 59 (304)
T cd06430 2 HLAVVACGERLEETLTMLKSAIVFS--QKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKF 59 (304)
T ss_pred EEEEEEcCCcHHHHHHHHHHHHHhC--CCCEEEEEEECCccCHHHHHHHHHHHHhcccee
Confidence 4788999999999999999987654 256666666654344456666888866554445
No 114
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=25.72 E-value=1.7e+02 Score=24.52 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=42.7
Q ss_pred CCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCcc
Q psy581 80 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 80 ~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
...-|+.|.+...+.+ ....|+|........ -.=.|. -..++.+.|-..++||.+.+.+|.|
T Consensus 78 ~V~~Gs~V~~~~~~~g--e~~~~~iVg~~ead~-~~~~IS-----------~~SPig~aLlGk~vGd~v~v~~p~g 139 (151)
T COG0782 78 VVTFGSTVTLENLDDG--EEVTYTIVGPDEADP-AKGKIS-----------VDSPLGRALLGKKVGDTVEVNTPGG 139 (151)
T ss_pred EEecCCEEEEEECCCC--CEEEEEEEccccccc-ccCcee-----------ccCHHHHHHhCCCCCCEEEEecCCc
Confidence 3557888888765544 567899987643221 000111 2477889999999999999999965
No 115
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=25.59 E-value=1.5e+02 Score=24.64 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=40.3
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
...|..|.+.....+ ....|+++.......... .|- ...++.+.|-..++||.|.+..|.|.
T Consensus 81 V~~Gs~V~l~~~~~g--~~~~~~lVgp~e~d~~~~-~IS-----------~~SPlG~ALlG~~~Gd~v~v~~p~g~ 142 (151)
T TIGR01462 81 VGFGSTVTIKDLDTG--EEETYTIVGSWEADPKEG-KIS-----------IDSPLGKALIGKKVGDVVEVQTPKGE 142 (151)
T ss_pred EeeCCEEEEEECCCC--CEEEEEEECchhcCccCC-eec-----------CCCHHHHHHcCCCCCCEEEEEeCCCc
Confidence 457787777754334 345777776432211111 121 45778888988999999999999994
No 116
>PF12669 P12: Virus attachment protein p12 family
Probab=25.54 E-value=53 Score=22.87 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHhhhhh
Q psy581 9 VGLIVVVGFIISAIQESK 26 (343)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (343)
++++++.+++++++++.+
T Consensus 4 I~~Ii~~~~~~v~~r~~~ 21 (58)
T PF12669_consen 4 IGIIILAAVAYVAIRKFI 21 (58)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555554443223333
No 117
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=24.97 E-value=4e+02 Score=23.78 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=29.3
Q ss_pred CceEeEEEEEEEEeC-C--CEEEEEEECCCCCccCCCCCCCEEEEEEeeC
Q psy581 48 DVKVPLKLKEKIEIN-H--DTRCFRFELPSAEHVLGLPIGQHLSLSATIN 94 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~-~--~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~ 94 (343)
...++++|..+.... + ..+.+++.++... ..+.+|+++.+.+..+
T Consensus 152 ~~~~~g~v~~I~~~~~~~~~~~~v~~~~~~~~--~~l~~G~~v~v~i~~~ 199 (265)
T TIGR00999 152 GRPLPARVDYVGPEVDGSSRTAKVRVLIKNEN--LTLKPGLFVQVRVETK 199 (265)
T ss_pred CCEEEEEEEEEccccCCCCceEEEEEEEeCCC--CccCCCCEEEEEEecC
Confidence 345778888877443 2 3455666655432 3578999999998643
No 118
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.82 E-value=70 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHhhhhhcc
Q psy581 8 GVGLIVVVGFIISAIQESKSK 28 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (343)
+.|+++.++++++++|+.|+.
T Consensus 12 a~~t~~~~l~fiavi~~ayr~ 32 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRP 32 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 468888888888877777775
No 119
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=23.70 E-value=4.4e+02 Score=23.08 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=37.9
Q ss_pred eCCCEEEEEEECCCCC-ccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhh
Q psy581 61 INHDTRCFRFELPSAE-HVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL 139 (343)
Q Consensus 61 i~~~~~~l~l~~~~~~-~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L 139 (343)
..+...+++|...... ....|+|-|. .+.+. +|+...-.|...+..+. ..+-..+= ++ ..+.++.|+
T Consensus 60 ~~~R~I~V~F~a~~~~~lpW~F~P~q~-~v~V~-pGE~~~~~y~a~N~sd~-~i~g~A~~----nV-----~P~~a~~YF 127 (188)
T PRK05089 60 DLSRTITVEFDANVNGGLPWEFKPEQR-SVDVH-PGELNLVFYEAENLSDR-PIVGQAIP----SV-----TPGQAGAYF 127 (188)
T ss_pred cCCcEEEEEEeccCCCCCCceEEeeee-EEEEc-CCCeEEEEEEEECCCCC-cEEEEEec----cc-----CHHHHhhhc
Confidence 3445566667643221 2233445553 23332 56655566666654433 22222221 22 345666666
Q ss_pred hc----------CCCCCeEEE
Q psy581 140 EN----------MKVGEPINV 150 (343)
Q Consensus 140 ~~----------l~~G~~V~v 150 (343)
++ |++|+++++
T Consensus 128 ~KieCFCF~eQ~L~pgE~~~m 148 (188)
T PRK05089 128 NKIECFCFTQQTLQPGETREM 148 (188)
T ss_pred cceeeecccCcccCCCCeEec
Confidence 43 567877766
No 120
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=22.71 E-value=2.3e+02 Score=29.53 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=37.4
Q ss_pred CCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe
Q psy581 46 DPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDE 96 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~ 96 (343)
+....+.++|+.++.+++ +++.|+|.+... -+.|+||+++-|...++..
T Consensus 233 ~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~--~l~Y~~GD~lgV~P~N~~~ 286 (600)
T PRK10953 233 SKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDS--GLRYQPGDALGVWYQNDPA 286 (600)
T ss_pred CCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCC--CCcccCCCEEEEEcCCCHH
Confidence 444567889999999975 388899987543 2689999999999876543
No 121
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=22.66 E-value=2.5e+02 Score=27.68 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=34.1
Q ss_pred eEeEEEEEEEEeCC----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe
Q psy581 50 KVPLKLKEKIEINH----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDE 96 (343)
Q Consensus 50 ~~~~~v~~~~~i~~----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~ 96 (343)
.+.++|++.+.+++ +++.++|+.++. ...|+||+++.|...++..
T Consensus 5 ~~~~~v~~~~~lt~~~~~~~~~~~ld~~~~--~~~Y~~GD~l~I~p~N~~~ 53 (416)
T cd06204 5 PFLAPVAVSRELFTGSDRSCLHIEFDISGS--GIRYQTGDHLAVWPTNPSE 53 (416)
T ss_pred CeEeEEEEEeeccCCCCccEEEEEEeCCCC--CCcccCCCEEEEEcCCCHH
Confidence 45678888888774 688899987553 3689999999998876543
No 122
>KOG1478|consensus
Probab=22.63 E-value=5.4e+02 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.407 Sum_probs=36.3
Q ss_pred ceEEEEEc---CcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCc-EEEEEEe
Q psy581 182 TQLSMIAG---GTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQ-FKLWYTV 248 (343)
Q Consensus 182 ~~vv~iA~---GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~-~~~~~~~ 248 (343)
+.+++|.| |.|.+ ++..++...+.+-+.+++..||+.... .+-..++.+-||++ +++.++.
T Consensus 3 RKvalITGanSglGl~----i~~RLl~~~De~~~ltl~ltcR~~~ka--e~vc~~lk~f~p~~~i~~~yvl 67 (341)
T KOG1478|consen 3 RKVALITGANSGLGLA----ICKRLLAEDDENVRLTLCLTCRNMSKA--EAVCAALKAFHPKSTIEVTYVL 67 (341)
T ss_pred ceEEEEecCCCcccHH----HHHHHHhccCCceeEEEEEEeCChhHH--HHHHHHHHHhCCCceeEEEEEE
Confidence 45777765 44555 444544444445678999999988642 23455666667742 4444443
No 123
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=22.47 E-value=71 Score=33.67 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=31.4
Q ss_pred EEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCC
Q psy581 214 SLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 214 ~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp 285 (343)
.+-|++.+..+-++-.+|-..... + .++++-+.++.. ....+.......+|+|||
T Consensus 202 ~~~~~~~~~gerylst~~~~~~~~-~-~l~lyNTltr~k---------------e~f~P~~~~~V~mYvCGP 256 (699)
T PRK14535 202 NVPWSVSTGTEQKLSSEQQRLIHN-P-MTTIYNTLTRQK---------------EPFAPIDPENVRMYVCGM 256 (699)
T ss_pred CCCceeccCcceeechhhhccccc-C-ceEEEECCCCCe---------------eccccCCCCceEEEecCC
Confidence 355777777776666665544433 2 466665554421 111222345789999999
No 124
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=21.80 E-value=2.2e+02 Score=24.09 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.5
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCCCCCe--EEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGY--MDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~--l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
+..|..|.|.. .++ ..+.|+|...+..... -.-.|- ...++.+.|-..++||.|.+..|.|.
T Consensus 83 V~~Gs~Vtl~~-~~g--~~~~~~IVg~~e~d~~~~~~~~IS-----------~~SPlG~ALlGk~vGD~v~v~~p~g~ 146 (158)
T PRK05892 83 LPGGTEVTLRF-PDG--EVETMHVISVVEETPVGREAETLT-----------ADSPLGQALAGHQAGDTVTYSTPQGP 146 (158)
T ss_pred EEcCcEEEEEE-CCC--CEEEEEEeCchhcCcccccCCEEc-----------cCCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 45788888875 344 4678999875433110 011121 46888899989999999999999994
No 125
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=21.00 E-value=2.5e+02 Score=21.17 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=17.2
Q ss_pred CCccchhhhcCCCCCeEEEecCcc
Q psy581 132 GGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 132 ~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
.|.+.+....++.||.|.+.|-..
T Consensus 38 ~g~~~~~~~~l~~Gd~V~v~G~v~ 61 (91)
T cd04482 38 TKEFRDVVRLLIPGDEVTVYGSVR 61 (91)
T ss_pred ccccccccCCCCCCCEEEEEEEEe
Confidence 455555557788999999888544
No 126
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.41 E-value=93 Score=31.18 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.2
Q ss_pred CCCcEEEEeCC
Q psy581 275 SPDNLVLMCGP 285 (343)
Q Consensus 275 ~~~~~i~vCGp 285 (343)
......|+|||
T Consensus 20 ~~~V~mYvCGp 30 (464)
T COG0215 20 PGKVKMYVCGP 30 (464)
T ss_pred CCeEEEEecCC
Confidence 34589999999
No 127
>PF08877 MepB: MepB protein; InterPro: IPR011235 This is a family of uncharacterised bacterial proteins.
Probab=20.14 E-value=4.5e+02 Score=21.36 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=32.2
Q ss_pred EeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEE
Q psy581 60 EINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 119 (343)
Q Consensus 60 ~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk 119 (343)
.++....++|+.... +-++||||.++-.... ...+||+.... .+.+.+.|.
T Consensus 13 ~l~~~~~~~R~AK~T-----P~K~G~FVt~Wkr~~~-g~~~Pf~~~d~---~d~liI~v~ 63 (123)
T PF08877_consen 13 KLNGKTIRFRLAKKT-----PKKPGQFVTFWKRDEN-GKNQPFDEEDS---FDFLIINVI 63 (123)
T ss_pred EECCcEEEEEecccC-----CCcccEEEEEEEECCC-CCccCCccccC---CCEEEEEEE
Confidence 345556777776543 3469999999987533 35677775433 345666665
No 128
>TIGR03500 FliO_TIGR flagellar biosynthetic protein FliO. This short protein found in flagellar biosynthesis operons contains a highly hydrophobic N-terminal sequence followed generally by two basic amino acids. This region is reminiscent of but distinct from the twin-arginine translocation signal sequence. Some instances of this gene have been names "FliZ" but phylogenetic tree building supports a single FliO family.
Probab=20.10 E-value=3e+02 Score=19.32 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=18.6
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPS 74 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~ 74 (343)
...++++...++++-....++..+
T Consensus 29 ~~i~vl~~~~Lg~~~~l~vV~v~~ 52 (69)
T TIGR03500 29 KGLKVLESLPLGPKESLVLVEVGD 52 (69)
T ss_pred ccEEEEEEEeECCCCEEEEEEECC
Confidence 347899999999998877776543
Done!