Query psy581
Match_columns 343
No_of_seqs 159 out of 1833
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:35:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1umk_A B5R, NADH-cytochrome B5 100.0 2.1E-43 7.3E-48 326.1 29.2 272 38-343 4-275 (275)
2 2eix_A NADH-cytochrome B5 redu 100.0 2.7E-41 9.2E-46 306.4 27.0 241 42-343 3-243 (243)
3 2cnd_A NADH-dependent nitrate 100.0 5E-41 1.7E-45 309.3 27.0 258 45-342 7-268 (270)
4 2r6h_A NADH:ubiquinone oxidore 100.0 2.1E-36 7.2E-41 281.2 24.0 244 44-342 4-286 (290)
5 1tvc_A Methane monooxygenase c 100.0 6.3E-37 2.1E-41 279.1 18.4 232 46-342 6-241 (250)
6 1qfj_A Protein (flavin reducta 100.0 2.6E-36 9E-41 271.7 20.2 223 50-342 2-226 (232)
7 4eh1_A Flavohemoprotein; struc 100.0 6.6E-36 2.2E-40 270.8 22.6 229 48-342 1-232 (243)
8 1fdr_A Flavodoxin reductase; f 100.0 9.9E-36 3.4E-40 270.6 23.1 228 49-342 3-238 (248)
9 1cqx_A Flavohemoprotein; globi 100.0 3.5E-35 1.2E-39 285.6 25.4 235 47-342 151-393 (403)
10 1gvh_A Flavohemoprotein; oxido 100.0 1.7E-35 5.9E-40 287.0 21.8 231 47-342 149-387 (396)
11 1krh_A Benzoate 1,2-dioxygenas 100.0 3.3E-35 1.1E-39 279.3 20.6 227 47-342 105-332 (338)
12 4g1v_A Flavohemoglobin; three 100.0 1.3E-34 4.4E-39 281.3 24.2 233 47-342 146-387 (399)
13 3vo2_A Putative uncharacterize 100.0 1.8E-34 6E-39 271.3 21.4 226 39-285 22-270 (310)
14 2bgi_A Ferredoxin-NADP(H) redu 100.0 3E-34 1E-38 264.8 22.0 225 50-341 16-256 (272)
15 2qdx_A Ferredoxin reductase; o 100.0 1.4E-34 4.7E-39 264.6 19.0 223 49-338 2-239 (257)
16 4fk8_A Ferredoxin--NADP reduct 100.0 5.5E-35 1.9E-39 269.3 15.9 228 47-341 16-258 (271)
17 3jqq_A Ferredoxin NADP reducta 100.0 6.1E-34 2.1E-38 268.4 19.7 247 41-342 6-313 (316)
18 3lo8_A Ferredoxin--NADP reduct 100.0 1.7E-33 5.9E-38 264.5 21.4 235 32-285 10-271 (311)
19 2pia_A Phthalate dioxygenase r 100.0 7.5E-33 2.6E-37 261.5 21.7 222 44-311 2-227 (321)
20 1fnb_A Ferredoxin-NADP+ reduct 100.0 1.5E-32 5.1E-37 258.5 22.3 225 41-285 28-274 (314)
21 2b5o_A FNR, ferredoxin--NADP r 100.0 5.5E-32 1.9E-36 263.0 21.0 242 42-337 114-380 (402)
22 1ep3_B Dihydroorotate dehydrog 100.0 1.8E-32 6.2E-37 251.5 16.6 210 51-336 6-215 (262)
23 2bmw_A Ferredoxin--NADP reduct 100.0 1.7E-31 5.9E-36 250.0 22.4 226 40-285 11-264 (304)
24 2rc5_A Ferredoxin-NADP reducta 100.0 3.9E-31 1.3E-35 248.7 17.5 239 42-335 13-291 (314)
25 2gpj_A Siderophore-interacting 100.0 5.9E-30 2E-34 233.7 17.0 217 46-342 4-223 (252)
26 1ddg_A Sulfite reductase (NADP 99.9 6.7E-26 2.3E-30 218.0 19.7 216 45-285 6-330 (374)
27 4dql_A Bifunctional P-450/NADP 99.9 4.1E-23 1.4E-27 199.7 14.2 167 97-285 169-346 (393)
28 1f20_A Nitric-oxide synthase; 99.9 1.8E-23 6E-28 204.9 9.3 168 98-285 209-389 (435)
29 1tll_A Nitric-oxide synthase, 99.9 9.3E-23 3.2E-27 210.0 10.6 182 98-333 430-624 (688)
30 3qfs_A CPR, P450R, NADPH--cyto 99.9 2.7E-22 9.4E-27 196.9 13.4 168 97-285 232-412 (458)
31 2qtl_A MSR;, methionine syntha 99.9 1.1E-22 3.7E-27 203.8 10.0 170 98-285 290-493 (539)
32 2bpo_A CPR, P450R, NADPH-cytoc 99.9 1.8E-22 6E-27 207.8 7.1 173 98-285 428-637 (682)
33 3qe2_A CPR, P450R, NADPH--cyto 99.9 9.3E-22 3.2E-26 200.4 12.3 167 98-285 393-572 (618)
34 3lrx_A Putative hydrogenase; a 99.8 1.3E-21 4.3E-26 166.1 1.8 133 142-336 1-138 (158)
35 3a1f_A Cytochrome B-245 heavy 99.8 1E-19 3.4E-24 157.1 8.8 138 148-336 1-172 (186)
36 3lyu_A Putative hydrogenase; t 99.8 2.6E-20 8.8E-25 155.2 2.8 127 148-336 3-133 (142)
37 3s2u_A UDP-N-acetylglucosamine 65.5 6.3 0.00022 36.4 4.8 36 182-220 3-40 (365)
38 3qfs_A CPR, P450R, NADPH--cyto 50.1 21 0.00072 34.3 5.6 62 43-106 55-120 (458)
39 4dql_A Bifunctional P-450/NADP 42.1 42 0.0014 31.4 6.3 44 49-95 5-53 (393)
40 2f23_A Anti-cleavage anti-GREA 39.8 23 0.00078 28.7 3.5 62 80-156 82-146 (156)
41 2qtl_A MSR;, methionine syntha 37.3 66 0.0023 31.5 7.0 61 43-105 107-172 (539)
42 2ks1_B Epidermal growth factor 35.6 27 0.00093 22.0 2.5 8 2-9 10-17 (44)
43 2p4v_A Transcription elongatio 34.3 28 0.00096 28.3 3.2 62 80-156 84-145 (158)
44 2pn0_A Prokaryotic transcripti 34.2 45 0.0015 26.4 4.4 61 81-155 57-117 (141)
45 3bmb_A Regulator of nucleoside 30.2 36 0.0012 26.7 3.2 61 81-155 54-114 (136)
46 3qe2_A CPR, P450R, NADPH--cyto 29.3 74 0.0025 31.7 6.0 57 48-106 220-280 (618)
47 1f20_A Nitric-oxide synthase; 24.5 98 0.0034 29.2 5.6 60 45-105 25-89 (435)
48 1grj_A GREA protein; transcrip 23.9 44 0.0015 27.0 2.6 62 81-156 86-147 (158)
49 2l2t_A Receptor tyrosine-prote 20.7 37 0.0013 21.4 1.2 6 23-28 30-35 (44)
No 1
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=100.00 E-value=2.1e-43 Score=326.13 Aligned_cols=272 Identities=56% Similarity=1.019 Sum_probs=229.6
Q ss_pred ccccccccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEE
Q psy581 38 KKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLV 117 (343)
Q Consensus 38 ~~~~~~~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~ 117 (343)
+...+.+++|..+++++|++++.+++++++|+|+.+.......|.||||+.|.++.++....|+|||++.+.+.+.++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~ 83 (275)
T 1umk_A 4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLV 83 (275)
T ss_dssp -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEE
T ss_pred cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEE
Confidence 34556889999999999999999999999999998765455789999999999988888899999999998777899999
Q ss_pred EEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHH
Q psy581 118 VKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML 197 (343)
Q Consensus 118 Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~ 197 (343)
||++.+..++.++++|.+|+||+++++||+|.|+||+|.+.++++|.|.++. +...+.+....++++||||||||||++
T Consensus 84 vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~-~~~~~~~~~~~~~~vliagGtGIaP~~ 162 (275)
T 1umk_A 84 IKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPML 162 (275)
T ss_dssp EECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECS-STTSCCEEEECSEEEEEEEGGGHHHHH
T ss_pred EEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccc-cccccccccCCceEEEEecCccHhHHH
Confidence 9987555556666789999999999999999999999988777776677753 100000111368899999999999999
Q ss_pred HHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCC
Q psy581 198 QLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPD 277 (343)
Q Consensus 198 sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 277 (343)
++++++........+++|+|++|+.++++|.+||+++.++++++++++++.+++..+|.+..|+++++.+.+.+.....+
T Consensus 163 ~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~~~l~~~~~~ 242 (275)
T 1umk_A 163 QVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEE 242 (275)
T ss_dssp HHHHHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHHHHSCCGGGC
T ss_pred HHHHHHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHHHhcCCCCCC
Confidence 99999987532457899999999999999999999999988867999999888777788889999987777766543357
Q ss_pred cEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 278 NLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 278 ~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
..+|+||| ++|++.+++..|.++|+++++|++|
T Consensus 243 ~~vyvCGp---------------------------------~~m~~~~v~~~L~~~G~~~~~I~~f 275 (275)
T 1umk_A 243 PLVLMCGP---------------------------------PPMIQYACLPNLDHVGHPTERCFVF 275 (275)
T ss_dssp CEEEEESC---------------------------------HHHHHHTTHHHHHHHTCCGGGEEEC
T ss_pred eEEEEECC---------------------------------HHHHHHHHHHHHHHcCCCHHHEEeC
Confidence 89999999 9999966788999999999999987
No 2
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=100.00 E-value=2.7e-41 Score=306.44 Aligned_cols=241 Identities=47% Similarity=0.873 Sum_probs=212.0
Q ss_pred ccccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEE
Q psy581 42 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVY 121 (343)
Q Consensus 42 ~~~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~ 121 (343)
+..++|..+++++|++++.+++++.+++|+.++......++||||+.|.++.++....|+|||++.+.+.+.++|+||.+
T Consensus 3 ~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~ 82 (243)
T 2eix_A 3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVY 82 (243)
T ss_dssp CCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECC
T ss_pred cccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCcccCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEc
Confidence 46789999999999999999999999999987655557899999999999888888899999999987778999999975
Q ss_pred eecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHH
Q psy581 122 FKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVR 201 (343)
Q Consensus 122 ~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~ 201 (343)
++|.+|+||+++++||+|.|+||+| .|.++. ...++++||||||||||++++++
T Consensus 83 ---------~~G~~S~~l~~l~~Gd~v~v~gP~G--------~f~~~~---------~~~~~~vliagG~GiaP~~~~l~ 136 (243)
T 2eix_A 83 ---------EKGQMSQYIDHLNPGDFLQVRGPKG--------QFDYKP---------NMVKEMGMIAGGTGITPMLQVAR 136 (243)
T ss_dssp ---------TTCHHHHHHHTCCTTCEEEEEEEEC--------SCCCCT---------TSSSEEEEEEEGGGHHHHHHHHH
T ss_pred ---------CCCCcchHhhcCCCCCEEEEECCeE--------EEEeCC---------CCCcEEEEEecCccHHHHHHHHH
Confidence 6799999999999999999999999 565543 12578999999999999999999
Q ss_pred HHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEE
Q psy581 202 HITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVL 281 (343)
Q Consensus 202 ~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~ 281 (343)
++........+++++|++|+.++++|.++|+++.++++ +++++++++++.++|.+..|+++.+.+++.+.....+..+|
T Consensus 137 ~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~l~~~~~~~~~~~~vy 215 (243)
T 2eix_A 137 AIIKNPKEKTIINLIFANVNEDDILLRTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVM 215 (243)
T ss_dssp HHHTCTTCCCEEEEEEEEEEGGGCTTHHHHHHHHHHCT-TEEEEEEEEECCTTCCSEESSCCHHHHHHHSCCTTSSEEEE
T ss_pred HHHhCCCCCcEEEEEEEcCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCccccCcCCccCHHHHHHhcCCCCCCeEEE
Confidence 99865323578999999999999999999999998888 59999999887777777889999877777765444567899
Q ss_pred EeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEeC
Q psy581 282 MCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFSY 343 (343)
Q Consensus 282 vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~~ 343 (343)
+||| ++|++ ++++.|.++|+++++|++|
T Consensus 216 ~CGp---------------------------------~~m~~-~v~~~l~~~G~~~~~i~~f 243 (243)
T 2eix_A 216 MCGP---------------------------------PMMNK-AMQGHLETLGYTPEQWFIF 243 (243)
T ss_dssp EESS---------------------------------HHHHH-HHHHHHHHHTCCGGGEEEC
T ss_pred EECC---------------------------------HHHHH-HHHHHHHHcCCCHHHEEeC
Confidence 9999 99999 8889999999999999987
No 3
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=5e-41 Score=309.31 Aligned_cols=258 Identities=48% Similarity=0.912 Sum_probs=215.9
Q ss_pred cCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeec
Q psy581 45 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKN 124 (343)
Q Consensus 45 ~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~ 124 (343)
.+|..+++++|++++.+++++++|+|+.+.......++||||+.|.++.++....|+|||++.+.+.+.++|+||.+.+.
T Consensus 7 ~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~ 86 (270)
T 2cnd_A 7 SNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKN 86 (270)
T ss_dssp ----CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSS
T ss_pred CCCCceEEEEEEEEEEeCCCeEEEEEECCCCccccCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccC
Confidence 48888999999999999999999999988765557899999999999888888999999999887778999999976544
Q ss_pred CCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 125 VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 125 ~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
.+++++.+|.+|+||+++++||+|.|+||+|.+.|.+.|.|.++.. ....++++||||||||||++++++++.
T Consensus 87 ~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~-------~~~~~~~vliagGtGiaP~~~~l~~l~ 159 (270)
T 2cnd_A 87 EHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK-------QRNARRLAMICGGSGITPMYQIIQAVL 159 (270)
T ss_dssp CBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTE-------EECCSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred cccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCC-------cccCCEEEEEeccccHHHHHHHHHHHH
Confidence 4555556799999999999999999999999888877777887630 013578999999999999999999998
Q ss_pred hCC-CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecC---CCCCCcccccccCHHHHHhhcCCCCCCcEE
Q psy581 205 KDP-TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDR---PEDGWKYSTGFVSAEMIAEHLFPPSPDNLV 280 (343)
Q Consensus 205 ~~~-~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i 280 (343)
... ....+++|+|++|+.++++|.+||+++.+++++++++++++++ ++++|.+..|++++..+.+.+........+
T Consensus 160 ~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~v 239 (270)
T 2cnd_A 160 RDQPEDHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLA 239 (270)
T ss_dssp HTTTTCCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEE
T ss_pred hcCCCCCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHHhcCCCcCCEEE
Confidence 652 1347899999999999999999999999988877999988876 345677789999987777766544456789
Q ss_pred EEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 281 LMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 281 ~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
|+||| ++|++.+++..|.++|++.++|+.
T Consensus 240 yvCGp---------------------------------~~m~~~~~~~~L~~~G~~~~~i~~ 268 (270)
T 2cnd_A 240 LACGP---------------------------------PPMIQFAISPNLEKMKYDMANSFV 268 (270)
T ss_dssp EEECC---------------------------------HHHHHTTTHHHHHTTTCCHHHHEE
T ss_pred EEECC---------------------------------HHHHHHHHHHHHHHcCCChhhcEE
Confidence 99999 999995568899999999988875
No 4
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.1e-36 Score=281.21 Aligned_cols=244 Identities=24% Similarity=0.418 Sum_probs=195.8
Q ss_pred ccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-----------------------------
Q psy581 44 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN----------------------------- 94 (343)
Q Consensus 44 ~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~----------------------------- 94 (343)
.+.+ ..+.++|++++.+++++++|+|+.++.. .+.++||||+.|.++..
T Consensus 4 ~~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~-~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 81 (290)
T 2r6h_A 4 VFGV-KEWECEVLSNKNVSTFIKEFVVKLPEGE-TMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKN 81 (290)
T ss_dssp --CC-CEEEEEEEEEEESSSSEEEEEEECSTTC-CCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEE
T ss_pred cccc-eEEEEEEEEeeecCCCeEEEEEEcCCCC-ccccCCCceEEEEcccccccccccccchhhcccccccccccccccC
Confidence 3444 4678999999999999999999987643 35699999999998742
Q ss_pred CeeeeeeceeccCCCCCCeEEEEEEEEeec---CCC---CCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeec
Q psy581 95 DEFVARAYTPVTSDEHHGYMDLVVKVYFKN---VHP---KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR 168 (343)
Q Consensus 95 g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~---~~~---~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~ 168 (343)
+....|+|||++.+.+.+.++|+||++.+. .++ +..+.|.+|+||+++++||+|.|+||+| .|.++
T Consensus 82 ~~~~~R~ySi~s~~~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G--------~f~~~ 153 (290)
T 2r6h_A 82 EEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYG--------DFHIQ 153 (290)
T ss_dssp CSCEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEEC--------CCCCC
T ss_pred CCCcceeeeccCCCCCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEeccc--------CCcCC
Confidence 346789999999998778999999963100 000 0124789999999999999999999999 55544
Q ss_pred cCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEe
Q psy581 169 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTV 248 (343)
Q Consensus 169 ~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~ 248 (343)
. ..++++||||||||||+++++++++.......+++|+|++|+.++++|.++|+++...+++ +++++++
T Consensus 154 ~----------~~~~~vliagGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~ 222 (290)
T 2r6h_A 154 D----------TDAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPN-FKFHIAL 222 (290)
T ss_dssp S----------SSCEEEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCTT-EEEEEEE
T ss_pred C----------CCCeEEEEECccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHHHHHHHHHHHhCCC-eEEEEEE
Confidence 3 3688999999999999999999887653235789999999999999999999999988884 9999998
Q ss_pred cCC--CCCCcccccccCHHHHHhhcCC--CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhh
Q psy581 249 DRP--EDGWKYSTGFVSAEMIAEHLFP--PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINF 324 (343)
Q Consensus 249 ~~~--~~~~~~~~g~~~~~~l~~~~~~--~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
+++ .+.|.+..|+++...+.+.+.. ...+..+|+||| ++|++
T Consensus 223 s~~~~~~~~~g~~g~v~~~~~~~~l~~~~~~~~~~vyvCGp---------------------------------~~m~~- 268 (290)
T 2r6h_A 223 SDPQPEDNWTGYVGFIHQVIYDNYLKDHDAPEDIEYYMCGP---------------------------------GPMAN- 268 (290)
T ss_dssp SSCCGGGCCCSCBSCHHHHHHHHTTTTCSCGGGEEEEEECC---------------------------------HHHHH-
T ss_pred ccCCcccCCCCeeEecCHHHHHhHHhhccCcCCcEEEEECC---------------------------------HHHHH-
Confidence 875 3456667899887655555432 124678999999 99999
Q ss_pred hhhhhHhhCCCCCCceEe
Q psy581 325 ACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 325 ~~~~~L~~~g~~~~~i~~ 342 (343)
++.+.|.++|+++++|+.
T Consensus 269 ~v~~~l~~~G~~~~~i~~ 286 (290)
T 2r6h_A 269 AVKGMLENLGVPRNMLFF 286 (290)
T ss_dssp HHHHHHHHHTCCGGGEEE
T ss_pred HHHHHHHHcCCCHHHEEe
Confidence 888999999999999985
No 5
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=6.3e-37 Score=279.08 Aligned_cols=232 Identities=21% Similarity=0.399 Sum_probs=194.2
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEEC-C-CCC-ccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEe
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFEL-P-SAE-HVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYF 122 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~-~-~~~-~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~ 122 (343)
....+++++|++++.+++++++|+|+. + +.. ....|+||||+.|.++ +....|+|||++.+.+.+.++|+||.+
T Consensus 6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~i~vk~~- 82 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIP--GTDVSRSYSPANLPNPEGRLEFLIRVL- 82 (250)
T ss_dssp CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTT--SCSSSEEECCBCCSSSSCCEEEEECCC-
T ss_pred CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCcccccCcCCCcEEEEEeC--CCccccccccCCCCCCCCeEEEEEEEC-
Confidence 344578899999999999999999997 6 532 2477999999999975 335789999999987678999999975
Q ss_pred ecCCCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHH
Q psy581 123 KNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVR 201 (343)
Q Consensus 123 ~~~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~ 201 (343)
++|.+|+||+ ++++||+|.|+||+| .|.++. ...++++||||||||||++++++
T Consensus 83 --------~~G~~s~~l~~~l~~Gd~v~v~gP~G--------~~~~~~---------~~~~~~vliagGtGiaP~~~~l~ 137 (250)
T 1tvc_A 83 --------PEGRFSDYLRNDARVGQVLSVKGPLG--------VFGLKE---------RGMAPRYFVAGGTGLAPVVSMVR 137 (250)
T ss_dssp --------TTSSSHHHHHHHSSSSSEEEEEEEEC--------CCSCCC---------CSSSCEEEEEESSTTHHHHHHHH
T ss_pred --------CCCCchHHHHhcCCCCCEEEEEcCcc--------ccccCc---------cCCceEEEEEeccCHHHHHHHHH
Confidence 6799999995 899999999999999 554443 12478999999999999999999
Q ss_pred HHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEE
Q psy581 202 HITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVL 281 (343)
Q Consensus 202 ~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~ 281 (343)
++...+ ...+++|+|++|+.++++|.++|+++.+.+++ +++++++++++++|.+..|++++... +.+.....+..+|
T Consensus 138 ~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~l~-~~~~~~~~~~~vy 214 (250)
T 1tvc_A 138 QMQEWT-APNETRIYFGVNTEPELFYIDELKSLERSMRN-LTVKACVWHPSGDWEGEQGSPIDALR-EDLESSDANPDIY 214 (250)
T ss_dssp HHHHHT-CCSCEEEEEECSSSTTCCCHHHHHHHHHHSSS-CEEEECCSSCSSCCSSSSSSSSHHHH-HHHHHSSSSSEEE
T ss_pred HHHhcC-CCceEEEEEEeCCHHHhhhHHHHHHHHHhCCC-eEEEEEeccCCCCcCCccceehHHHH-hhhhcccCCcEEE
Confidence 988654 35789999999999999999999999888875 99998888877777778899987543 3333213467899
Q ss_pred EeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 282 MCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 282 vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
+||| ++|++ .+...|+++|++.++|+.
T Consensus 215 vCGp---------------------------------~~m~~-~v~~~l~~~G~~~~~i~~ 241 (250)
T 1tvc_A 215 LCGP---------------------------------PGMID-AACELVRSRGIPGEQVFF 241 (250)
T ss_dssp EESS---------------------------------HHHHH-HHHHHHHHHCCCCSEEEE
T ss_pred EeCC---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 9999 99999 888999999999999985
No 6
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=100.00 E-value=2.6e-36 Score=271.72 Aligned_cols=223 Identities=18% Similarity=0.283 Sum_probs=185.4
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 129 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~ 129 (343)
.++++|++++.+++++++|+|+.+. ...|+||||+.|.++. ...|+|||++.+.+.+.++|+||.+
T Consensus 2 ~~~~~V~~~~~~~~~~~~l~l~~~~---~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~~~~~l~l~i~~~-------- 67 (232)
T 1qfj_A 2 TLSCKVTSVEAITDTVYRVRIVPDA---AFSFRAGQYLMVVMDE---RDKRPFSMASTPDEKGFIELHIGAS-------- 67 (232)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEESS---CCCCCTTCEEEEESSS---SCEEEEECCSCTTSTTCEEEEEC----------
T ss_pred ceEEEEEEEEecCCCEEEEEEecCC---CCCcCCCCEEEEECCC---CceeeeecCCCCCCCCcEEEEEEEc--------
Confidence 3679999999999999999999764 3689999999999863 4689999999988778999999986
Q ss_pred CCCCccchh-hhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC
Q psy581 130 PDGGKMSQF-LENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 208 (343)
Q Consensus 130 ~~~G~~S~~-L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~ 208 (343)
.+|.+|.+ ++++++||+|.|+||+| .|.+.. ...++++||||||||||++++++++...+
T Consensus 68 -~~G~~s~~~~~~l~~Gd~v~v~gP~G--------~~~~~~---------~~~~~~vliagG~GitP~~~~l~~l~~~~- 128 (232)
T 1qfj_A 68 -EINLYAKAVMDRILKDHQIVVDIPHG--------EAWLRD---------DEERPMILIAGGTGFSYARSILLTALARN- 128 (232)
T ss_dssp -----CCHHHHHHHHHHSEEEEEEEEC--------SCCCCS---------CSSSCEEEEEETTCHHHHHHHHHHHHHHC-
T ss_pred -cCCchhHHHHHhCCCCCEEEEeCCcc--------ceEeCC---------CCCCcEEEEEecccHhHHHHHHHHHHhcC-
Confidence 56777776 57899999999999999 554443 12578999999999999999999998754
Q ss_pred CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcc
Q psy581 209 DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRK 288 (343)
Q Consensus 209 ~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~ 288 (343)
...+++++|++|+.+++++.++|+++..++++ ++++.++++++++|.+..|++++..+.+ +.. ..+..+|+|||
T Consensus 129 ~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~g~~g~v~~~~~~~-~~~-~~~~~vyvCGp--- 202 (232)
T 1qfj_A 129 PNRDITIYWGGREEQHLYDLCELEALSLKHPG-LQVVPVVEQPEAGWRGRTGTVLTAVLQD-HGT-LAEHDIYIAGR--- 202 (232)
T ss_dssp TTCCEEEEEEESSGGGCTTHHHHHHHHHHCTT-EEEEEEESSCCTTCCSEESCHHHHHHHH-CSC-CTTCEEEEESC---
T ss_pred CCCcEEEEEeeCCHHHhhhHHHHHHHHHHCCC-eEEEEEEcCCCCCcCCceeeHHHHHHHh-cCC-ccccEEEEECC---
Confidence 45789999999999999999999999988885 9999999888777877889998755544 322 35688999999
Q ss_pred ccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhH-hhCCCCCCceEe
Q psy581 289 TVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNL-DKLGYSEKLRFS 342 (343)
Q Consensus 289 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~g~~~~~i~~ 342 (343)
++|++ ++++.| +++|+++++|+.
T Consensus 203 ------------------------------~~m~~-~v~~~l~~~~g~~~~~i~~ 226 (232)
T 1qfj_A 203 ------------------------------FEMAK-IARDLFCSERNAREDRLFG 226 (232)
T ss_dssp ------------------------------HHHHH-HHHHHHHHHSCCCGGGEEC
T ss_pred ------------------------------HHHHH-HHHHHHHHHcCCCHHHEEE
Confidence 99999 788888 899999999985
No 7
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=6.6e-36 Score=270.82 Aligned_cols=229 Identities=19% Similarity=0.235 Sum_probs=190.2
Q ss_pred CceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCee--eeeeceeccCCCCCCeEEEEEEEEeecC
Q psy581 48 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNV 125 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~--~~R~yTi~s~~~~~~~l~~~Vk~~~~~~ 125 (343)
+.|++++|++++.+++++++|+|+.++......|+||||+.|.++.++.. ..|+|||++.+.+ +.++|+||.+..
T Consensus 1 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~~-- 77 (243)
T 4eh1_A 1 RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKREGV-- 77 (243)
T ss_dssp CCCEEEEEEEEEECSSSEEEEEEEESSCSCCCCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS-SCEEEEEECTTT--
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCcCCCCEEEEEEecCCCccccceeeEeccCCCC-CeEEEEEEEeec--
Confidence 35789999999999999999999987765567899999999999876643 5799999998765 789999996311
Q ss_pred CCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH
Q psy581 126 HPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT 204 (343)
Q Consensus 126 ~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~ 204 (343)
...++|.+|+||+ ++++|++|.|+||+| .|.++. ..++++||||||||||++++++++.
T Consensus 78 --~~~~~G~~S~~l~~~l~~G~~v~v~gP~G--------~~~~~~----------~~~~~vliagGtGitp~~~~l~~l~ 137 (243)
T 4eh1_A 78 --GSDNPGLVSHYLHNNVKVGDSVKLYAPAG--------DFFYVE----------RERPVVLISAGVGATPMQAILHTLA 137 (243)
T ss_dssp --TSSSCCHHHHHHHHHCCTTCEEEEEEEEC--------SCCCCC----------CSSCEEEEEEGGGHHHHHHHHHHHH
T ss_pred --CCCCCCeehhHHHhcCCCCCEEEEEccCc--------ccCcCC----------CCCCEEEEEccccHHHHHHHHHHHH
Confidence 0113589999996 799999999999999 554443 3688999999999999999999998
Q ss_pred hCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeC
Q psy581 205 KDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCG 284 (343)
Q Consensus 205 ~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCG 284 (343)
..+ ... ++++|++|+.+++++.++|+++.+++ +++++++++++.+++. ..|+++...+ .+. ..+..+|+||
T Consensus 138 ~~~-~~~-v~l~~~~r~~~~~~~~~el~~l~~~~--~~~~~~~~s~~~~~~~-~~g~~~~~~~--~~~--~~~~~vyvCG 208 (243)
T 4eh1_A 138 KQN-KSG-VTYLYACNSAKEHTFAQETAQLIAQQ--GWMQQVWYRDESADDV-LQGEMQLAEL--ILP--IEDGDFYLCG 208 (243)
T ss_dssp HTT-CCS-EEEEEEESSGGGCTTHHHHHHHHHHH--TCEEEEEESSCCCTTC-EESSCCCTTS--CCC--TTTCEEEEEE
T ss_pred HcC-CCe-EEEEEEeCChhhhhHHHHHHHHHHhC--CeEEEEEEccCCCccc-ccCCccHHHe--ecc--CCCcEEEEEC
Confidence 765 233 99999999999999999999998877 4889888887665544 6788887544 232 3678999999
Q ss_pred CCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 285 PPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 285 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
| ++|++ ++++.|.++|++.++|++
T Consensus 209 p---------------------------------~~m~~-~v~~~l~~~g~~~~~i~~ 232 (243)
T 4eh1_A 209 P---------------------------------IGFMQ-YVVKQLLALGVDKARIHY 232 (243)
T ss_dssp C---------------------------------HHHHH-HHHHHHHHHTCCGGGEEE
T ss_pred C---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 9 99999 888999999999999975
No 8
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=100.00 E-value=9.9e-36 Score=270.59 Aligned_cols=228 Identities=21% Similarity=0.273 Sum_probs=186.4
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
.+++++|++++.+++++++|+|+. +. ..++||||+.|.++.++....|+|||++.+.+ +.++|+|+.+
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~~-~~---~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~------- 70 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVHA-PV---LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTV------- 70 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEC-CC---CCCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECC-------
T ss_pred ceEEEEEEEEEEcCCCEEEEEEeC-CC---CCcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEe-------
Confidence 578999999999999999999973 32 67999999999998767778999999998876 7899999975
Q ss_pred CCCCCccchhhhcCCCCCeEEEe-cCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~v~-GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
++|.+|+||+++++||+|.|+ ||+| .|.++. + ...++++||||||||||++++++++...+
T Consensus 71 --~~G~~s~~l~~l~~Gd~v~v~~gP~G--------~f~l~~-~-------~~~~~~vliagG~GitP~~~~l~~l~~~~ 132 (248)
T 1fdr_A 71 --PDGKLSPRLAALKPGDEVQVVSEAAG--------FFVLDE-V-------PHCETLWMLATGTAIGPYLSILRLGKDLD 132 (248)
T ss_dssp --TTCSSHHHHHTCCTTCEEEEESSCBC--------CCSGGG-S-------CCCSEEEEEEEGGGGHHHHHHHHHCCSCT
T ss_pred --CCCchhhHHHhCCCcCEEEEecCCcc--------eeEcCC-C-------CCCceEEEEEecccHHHHHHHHHHHHhhC
Confidence 679999999999999999999 9999 666554 0 02578999999999999999999976543
Q ss_pred CCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhh----c--CCCCCCcEEE
Q psy581 208 TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEH----L--FPPSPDNLVL 281 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~----~--~~~~~~~~i~ 281 (343)
...+++++|++|+.++++|.++|+++.+++++++++++++++++. +....|++++....+. + ..+..+..+|
T Consensus 133 -~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy 210 (248)
T 1fdr_A 133 -RFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVM 210 (248)
T ss_dssp -TCSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEE
T ss_pred -CCCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEE
Confidence 357899999999999999999999999888767999988887543 2235688876433221 1 1223578999
Q ss_pred EeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhH-hhCCCCCCceEe
Q psy581 282 MCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNL-DKLGYSEKLRFS 342 (343)
Q Consensus 282 vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~~g~~~~~i~~ 342 (343)
+||| ++|++ ++++.| +++|+++++|+.
T Consensus 211 ~CGp---------------------------------~~m~~-~v~~~l~~~~G~~~~~i~~ 238 (248)
T 1fdr_A 211 LCGN---------------------------------PQMVR-DTQQLLKETRQMTKHLRRR 238 (248)
T ss_dssp EEEC---------------------------------HHHHH-HHHHHHHHHHCCCBCBTTB
T ss_pred EeCC---------------------------------HHHHH-HHHHHHHHHcCCChHHcCC
Confidence 9999 99999 888999 999999998753
No 9
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=100.00 E-value=3.5e-35 Score=285.55 Aligned_cols=235 Identities=22% Similarity=0.315 Sum_probs=193.9
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCC--eeeeeeceeccCCCCCCeEEEEEEEEeec
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKN 124 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g--~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~ 124 (343)
...+++++|++++.+++++++|+|++++......|+||||+.|.++.++ ....|+|||++.|. .+.++|+||.+.
T Consensus 151 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~-- 227 (403)
T 1cqx_A 151 WKGWRTFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREG-- 227 (403)
T ss_dssp CSSCEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCC--
T ss_pred CCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECC--
Confidence 4578899999999999999999999876544568999999999998655 26789999999886 478999999740
Q ss_pred CCCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 125 VHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 125 ~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
.++. ++|.+|+||+ ++++||+|.|+||+| .|.++. ...++++||||||||||++++++++
T Consensus 228 -~~~~-~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l 288 (403)
T 1cqx_A 228 -GGPQ-PPGYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDV---------DAKTPIVLISGGVGLTPMVSMLKVA 288 (403)
T ss_dssp -BTTB-CCCHHHHHHHHHCCTTCEEEECCCBC--------SCSCCT---------TCCSCEEEEESSCCHHHHHHHHHHH
T ss_pred -CCCC-CCCeehHHHhhCCCCCCEEEEecCcc--------CcccCC---------CCCCCEEEEEecccHhhHHHHHHHH
Confidence 0000 1599999998 699999999999999 665542 1357899999999999999999999
Q ss_pred HhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCC-----cccccccCHHHHHhhcCCCCCCc
Q psy581 204 TKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGW-----KYSTGFVSAEMIAEHLFPPSPDN 278 (343)
Q Consensus 204 ~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~l~~~~~~~~~~~ 278 (343)
.. . ...+++++|++|+.++++|.++|+++.+++++ ++++++++++...+ ....|+++.+.+.+.+.. .+.
T Consensus 289 ~~-~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~~~~--~~~ 363 (403)
T 1cqx_A 289 LQ-A-PPRQVVFVHGARNSAVHAMRDRLREAAKTYEN-LDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILL--PDA 363 (403)
T ss_dssp TC-S-SCCCEEEEEEESCSSSCHHHHHHHHHHHHCTT-EEEEEEESSCCTTCCBTTTBSEESSCCGGGSHHHHCC--TTC
T ss_pred Hh-C-CCCcEEEEEEeCChhhCcHHHHHHHHHHhCCC-cEEEEEECCCCcccccccccCcCCCcCHHHHhhccCC--CCC
Confidence 86 2 35789999999999999999999999998885 99998888765543 345789987656653221 267
Q ss_pred EEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 279 ~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
.+|+||| ++|++ +++..|.++|++.++|++
T Consensus 364 ~vyvCGp---------------------------------~~m~~-~v~~~L~~~Gv~~~~i~~ 393 (403)
T 1cqx_A 364 DYYICGP---------------------------------IPFMR-MQHDALKNLGIHEARIHY 393 (403)
T ss_dssp EEEEESS---------------------------------HHHHH-HHHHHHHHTTCCGGGEEE
T ss_pred EEEEeCC---------------------------------HHHHH-HHHHHHHHcCCCHHHeEE
Confidence 8999999 99999 888999999999999985
No 10
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=100.00 E-value=1.7e-35 Score=287.04 Aligned_cols=231 Identities=19% Similarity=0.293 Sum_probs=193.4
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCe--eeeeeceeccCCCCCCeEEEEEEEEeec
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKN 124 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~--~~~R~yTi~s~~~~~~~l~~~Vk~~~~~ 124 (343)
...+++++|++++.+++++++|+|++++......|+||||+.|.++.++. ...|+|||++.|. .+.++|+||.+
T Consensus 149 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~--- 224 (396)
T 1gvh_A 149 WEGTRDFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKRE--- 224 (396)
T ss_dssp CSSEEEEEEEEEEECSSSEEEEEEEETTCCCCCCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECC---
T ss_pred CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCeEEEEecCCCCccceeecceeccCCC-CCeEEEEEEEc---
Confidence 35789999999999999999999998765545689999999999985452 5799999999886 47899999975
Q ss_pred CCCCCCCCCccchhhhc-CCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 125 VHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 125 ~~~~~~~~G~~S~~L~~-l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
++|.+|+||++ +++||+|.|+||+| .|.++. ...++++||||||||||++++++++
T Consensus 225 ------~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l 281 (396)
T 1gvh_A 225 ------EGGQVSNWLHNHANVGDVVKLVAPAG--------DFFMAV---------ADDTPVTLISAGVGQTPMLAMLDTL 281 (396)
T ss_dssp ------TTCHHHHHHHHTCCTTCEEEEEEEEC--------SCCCCC---------CTTCCEEEEEEGGGGHHHHHHHHHH
T ss_pred ------CCCcchHHHHhcCCCCCEEEEEcCCc--------ceECCC---------CCCCCEEEEecchhHhHHHHHHHHH
Confidence 57999999985 99999999999999 666642 1367899999999999999999999
Q ss_pred HhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCC-----cccccccCHHHHHhhcCCCCCCc
Q psy581 204 TKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGW-----KYSTGFVSAEMIAEHLFPPSPDN 278 (343)
Q Consensus 204 ~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~l~~~~~~~~~~~ 278 (343)
...+ ...+++++|++|+.++++|.++|+++.+++++ ++++++++++...+ ....|+++.+.+.+... ..+.
T Consensus 282 ~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~~--~~~~ 357 (396)
T 1gvh_A 282 AKAG-HTAQVNWFHAAENGDVHAFADEVKELGQSLPR-FTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFS--DPTM 357 (396)
T ss_dssp HHHT-CCSCEEEEEEESCTTTCCSHHHHHHHHHTSSS-EEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCCC--CTTC
T ss_pred HhcC-CCCcEEEEEEeCCHHHhhhHHHHHHHHHHCCC-eEEEEEECCCCccccccCccCccCcCCHHHHhhccC--CCCC
Confidence 8654 35789999999999999999999999988885 99998888765322 23578888765554321 1267
Q ss_pred EEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 279 ~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
.+|+||| ++|++ ++++.|.++|++.++|+.
T Consensus 358 ~vyvCGp---------------------------------~~m~~-~v~~~L~~~Gv~~~~i~~ 387 (396)
T 1gvh_A 358 QFYLCGP---------------------------------VGFMQ-FTAKQLVDLGVKQENIHY 387 (396)
T ss_dssp EEEEESC---------------------------------HHHHH-HHHHHHHHTTCCGGGEEE
T ss_pred EEEEeCC---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 8999999 99999 888999999999999985
No 11
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=3.3e-35 Score=279.33 Aligned_cols=227 Identities=24% Similarity=0.385 Sum_probs=191.1
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCC
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH 126 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~ 126 (343)
+..+++++|++++.+++++++|+|+.+.......|.||||+.|.++. ....|+|||++.+. .+.++|+||.+
T Consensus 105 ~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~--~~~~R~ySi~s~~~-~~~l~~~vk~~----- 176 (338)
T 1krh_A 105 KIHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNVTLPG--TTETRSYSFSSQPG-NRLTGFVVRNV----- 176 (338)
T ss_dssp CCEEEEEEEEEEEESSSSEEEEEEEECTTCCCCCCCTTCEEEEECTT--SSCEEEEECCSCTT-CSEEEEEEECC-----
T ss_pred CceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCCCcCCCCeEEEEcCC--CCccccccccCCCC-CCeEEEEEEEc-----
Confidence 34678899999999999999999998764334789999999999863 34789999999987 68999999976
Q ss_pred CCCCCCCccchhh-hcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 127 PKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 127 ~~~~~~G~~S~~L-~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
++|.+|+|| .++++|++|.|+||+| .|.++. ..++++||||||||||++++++++..
T Consensus 177 ----~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~~~~----------~~~~~vliagGtGiaP~~s~l~~l~~ 234 (338)
T 1krh_A 177 ----PQGKMSEYLSVQAKAGDKMSFTGPFG--------SFYLRD----------VKRPVLMLAGGTGIAPFLSMLQVLEQ 234 (338)
T ss_dssp ----TTCHHHHHHHTTCCTTCEEEEEEEEC--------SCSCCC----------CSSCEEEEEEGGGHHHHHHHHHHHHH
T ss_pred ----CCCCchhhHhhccCCCCEEEEECCcc--------ceEeCC----------CCceEEEEEccccHhHHHHHHHHHHH
Confidence 679999999 5899999999999999 565544 24789999999999999999999987
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCC
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp 285 (343)
.+ ...+++|+|++|+.++++|.++|+++...+++ +++++++++++..|. ..|++++....+.+.. .+..+|+|||
T Consensus 235 ~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~-~~~~~~~s~~~~~~~-~~g~v~~~l~~~~~~~--~~~~vy~CGp 309 (338)
T 1krh_A 235 KG-SEHPVRLVFGVTQDCDLVALEQLDALQQKLPW-FEYRTVVAHAESQHE-RKGYVTGHIEYDWLNG--GEVDVYLCGP 309 (338)
T ss_dssp HC-CSSCEEEEEEESSGGGCCCHHHHHHHHHHCTT-EEEEEEETTCCSSSS-EESCSGGGCCGGGGGG--GCSEEEEEEE
T ss_pred cC-CCCeEEEEEEeCCHHHhhhHHHHHHHHHhCCC-eEEEEEEecCCCCCC-ccCccCHHHHHhhccc--CCcEEEEECC
Confidence 54 35789999999999999999999999988885 999999988765554 5788876433233332 4678999999
Q ss_pred CccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 286 PRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 286 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
++|++ ++++.|.++|++.++||+
T Consensus 310 ---------------------------------~~m~~-~v~~~l~~~G~~~~~i~~ 332 (338)
T 1krh_A 310 ---------------------------------VPMVE-AVRSWLDTQGIQPANFLF 332 (338)
T ss_dssp ---------------------------------HHHHH-HHHHHHHHHTCCCSEEEE
T ss_pred ---------------------------------HHHHH-HHHHHHHHcCCCHHHEEE
Confidence 99999 888999999999999985
No 12
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=100.00 E-value=1.3e-34 Score=281.33 Aligned_cols=233 Identities=18% Similarity=0.270 Sum_probs=192.5
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccC----CCCCCCEEEEEEeeC--Ce--eeeeeceeccCCCCCCeEEEEE
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVL----GLPIGQHLSLSATIN--DE--FVARAYTPVTSDEHHGYMDLVV 118 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~----~~~pGq~v~l~~~~~--g~--~~~R~yTi~s~~~~~~~l~~~V 118 (343)
-..|++++|++++.+++++++|+|++++..... .|+||||+.|+++.+ +. ...|+|||++.|.+ +.++|+|
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~-~~~~i~V 224 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTK-NGLRFAV 224 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT-TCEEEEE
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC-CeEEEEE
Confidence 567899999999999999999999988754433 899999999998655 43 67899999999865 7899999
Q ss_pred EEEeecCCCCCCCCCccchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHH
Q psy581 119 KVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML 197 (343)
Q Consensus 119 k~~~~~~~~~~~~~G~~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~ 197 (343)
|.+... ...+.|.+|+||+ ++++||+|.|+||+| .|.++. +. .....++++||||||||||++
T Consensus 225 k~~~~~---~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G--------~f~l~~-~~----~~~~~~~~vlIagG~GitP~~ 288 (399)
T 4g1v_A 225 KMEAAR---ENFPAGLVSEYLHKDAKVGDEIKLSAPAG--------DFAINK-EL----IHQNEVPLVLLSSGVGVTPLL 288 (399)
T ss_dssp ECCCCB---TTBCCCHHHHHHHHTCCTTCEEEEEEEEC--------SCCCCT-TT----TTCSSSCEEEEEEGGGHHHHH
T ss_pred EeccCC---CCCCCCEehhHHHhCCCCCCEEEEEeccc--------ceeeCc-cc----ccCCCCCEEEEecceeHhHHH
Confidence 973110 0003789999995 899999999999999 666554 00 000257899999999999999
Q ss_pred HHHHHHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCC
Q psy581 198 QLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPD 277 (343)
Q Consensus 198 sll~~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 277 (343)
+|++++...+ ...+++++|++|+.++++|.++|+++.+++++ ++++++.+++ .|+++.+.+.+.+.. +
T Consensus 289 s~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~-~~~~~~~s~~-------~g~~~~~~l~~~~~~---~ 356 (399)
T 4g1v_A 289 AMLEEQVKCN-PNRPIYWIQSSYDEKTQAFKKHVDELLAECAN-VDKIIVHTDT-------EPLINAAFLKEKSPA---H 356 (399)
T ss_dssp HHHHHHHHHC-TTSCEEEEEEESSSTTSTTHHHHHHHHTTCSS-EEEEEEETTT-------SCCCCHHHHHHHSCS---S
T ss_pred HHHHHHHHcC-CCCCEEEEEecCCHHHhhhHHHHHHHHHhCCC-cEEEEEEeCC-------CCcccHHHHHhhCCC---C
Confidence 9999998754 45789999999999999999999999988885 9999988874 378988777776643 7
Q ss_pred cEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceEe
Q psy581 278 NLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342 (343)
Q Consensus 278 ~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~~ 342 (343)
..+|+||| ++|++ .++..|.++|++.++|++
T Consensus 357 ~~vyvCGp---------------------------------~~m~~-~v~~~L~~~Gv~~~~i~~ 387 (399)
T 4g1v_A 357 ADVYTCGS---------------------------------LAFMQ-AMIGHLKELEHRDDMIHY 387 (399)
T ss_dssp CEEEEEEC---------------------------------HHHHH-HHHHHHHHTTCCGGGEEE
T ss_pred CEEEEECC---------------------------------HHHHH-HHHHHHHHcCCCHHHeee
Confidence 89999999 99999 888899999999999885
No 13
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=100.00 E-value=1.8e-34 Score=271.34 Aligned_cols=226 Identities=23% Similarity=0.308 Sum_probs=177.3
Q ss_pred cccccccCCCceEeEEEEEEEEeCCC-----EEEEEEECCCCCccCCCCCCCEEEEEEee---CCe-eeeeeceeccCCC
Q psy581 39 KELKTLVDPDVKVPLKLKEKIEINHD-----TRCFRFELPSAEHVLGLPIGQHLSLSATI---NDE-FVARAYTPVTSDE 109 (343)
Q Consensus 39 ~~~~~~~~p~~~~~~~v~~~~~i~~~-----~~~l~l~~~~~~~~~~~~pGq~v~l~~~~---~g~-~~~R~yTi~s~~~ 109 (343)
+.+.....|...++++|++++.++++ +++|+|+.+. .+.|.||||+.|.++. +|. ...|+|||++.+.
T Consensus 22 ~~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~---~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~ 98 (310)
T 3vo2_A 22 GLVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEG---EIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSAL 98 (310)
T ss_dssp TCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTT---CCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTT
T ss_pred CCceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCC---CCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCc
Confidence 44566788999999999999999998 9999999754 3679999999999864 232 3589999999886
Q ss_pred ----CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEE
Q psy581 110 ----HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLS 185 (343)
Q Consensus 110 ----~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv 185 (343)
+.+.++|+||.+.+..+....+.|.+|+||+++++|++|.|+||+|. .|.++. ...++++
T Consensus 99 ~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-------~~~~~~---------~~~~~~v 162 (310)
T 3vo2_A 99 GDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGK-------EMLMPK---------DPNATVI 162 (310)
T ss_dssp TTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS-------TTCCBS---------CTTCEEE
T ss_pred ccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCC-------cccCCC---------CCCCCEE
Confidence 46899999997532221111125999999999999999999999995 232332 1357899
Q ss_pred EEEcCcchHhHHHHHHHHHhCCCC----CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccc
Q psy581 186 MIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGF 261 (343)
Q Consensus 186 ~iA~GtGIap~~sll~~~~~~~~~----~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 261 (343)
||||||||||++++++++...... ..+++|+|++|+.++++|.++|+++.+++++++++++++++++++|.+..++
T Consensus 163 lIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~ 242 (310)
T 3vo2_A 163 MLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMY 242 (310)
T ss_dssp EEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCC
T ss_pred EEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCccee
Confidence 999999999999999998754311 2689999999999999999999999999886799999999987777666666
Q ss_pred cCHHHHH------hhcCCCCCCcEEEEeCC
Q psy581 262 VSAEMIA------EHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 262 ~~~~~l~------~~~~~~~~~~~i~vCGp 285 (343)
++..+.. +.+. ..+..+|+|||
T Consensus 243 v~~~l~~~~~~l~~~l~--~~~~~vyvCGp 270 (310)
T 3vo2_A 243 IQTRMAEYREELWELLK--KDNTYVYMCGL 270 (310)
T ss_dssp HHHHHHTTHHHHHHHHT--STTEEEEEEES
T ss_pred hHHHHHHHHHHHHHhcc--cCCcEEEEeCC
Confidence 6543211 1121 24789999999
No 14
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=100.00 E-value=3e-34 Score=264.84 Aligned_cols=225 Identities=19% Similarity=0.252 Sum_probs=184.5
Q ss_pred eEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEee-CCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 50 ~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~-~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
+++++|++++.+++++++|+|+.++. ..|+||||+.|.++. ++....|+|||++.+.+ +.++|+|+.+
T Consensus 16 ~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~------- 84 (272)
T 2bgi_A 16 PDAQTVTSVRHWTDTLFSFRVTRPQT---LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKV------- 84 (272)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECC-------
T ss_pred eEEEEEEEEEEcCCCEEEEEEeCCCC---CccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEc-------
Confidence 36799999999999999999998753 579999999999984 46678999999998875 8899999975
Q ss_pred CCCCCccchhhhcCCCCCeEEEe-cCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~v~-GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
++|.+|+||+++++||+|.|+ ||+| .|.++. + ...++++||||||||||++++++++....
T Consensus 85 --~~G~~s~~l~~l~~Gd~v~v~~gP~G--------~f~~~~-~-------~~~~~~vliagG~GiaP~~~~l~~l~~~~ 146 (272)
T 2bgi_A 85 --PDGPLTSRLQHIKVGEQIILRPKPVG--------TLVIDA-L-------LPGKRLWFLATGTGIAPFASLMREPEAYE 146 (272)
T ss_dssp --TTCTTHHHHTTCCTTCEEEEEEEEEC--------SCCGGG-B-------CCCSEEEEEEEGGGGHHHHHHTTCGGGGT
T ss_pred --cCCCchhHHHhCCCCCEEEEeeCCCC--------cccccc-c-------ccCCeEEEEeecccHHHHHHHHHHHHhcC
Confidence 679999999999999999999 9999 565554 0 02578999999999999999999876543
Q ss_pred CCCccEEEEEecCCchhhhhHHHHH-HHHH-----hC-CCcEEEEEEecCCCCCCcccccccCHHHHHhh------cC-C
Q psy581 208 TDNTKMSLIFANQSEKDILLREELE-EAAA-----KN-PDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEH------LF-P 273 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~-~l~~-----~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~-~ 273 (343)
...+++++|++|+.++++|.++|+ ++.+ ++ +.+++++++++++.. ...|++++...... +. .
T Consensus 147 -~~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~ 222 (272)
T 2bgi_A 147 -KFDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEF---HHMGRITDNLASGKVFEDLGIAPM 222 (272)
T ss_dssp -SCSEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSCC---SSBCCHHHHHHSCHHHHHHTCCCC
T ss_pred -CCCcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCcc---ccCceechHHHhhhHhhhcccccC
Confidence 347899999999999999999999 9987 55 346999988887632 25678776433221 11 1
Q ss_pred CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceE
Q psy581 274 PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRF 341 (343)
Q Consensus 274 ~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~ 341 (343)
...+..+|+||| ++|++ ++.+.|.++|+++++|+
T Consensus 223 ~~~~~~vyvCGp---------------------------------~~m~~-~v~~~l~~~G~~~~~i~ 256 (272)
T 2bgi_A 223 NPETDRAMVCGS---------------------------------LAFNV-DVMKVLESYGLREGANS 256 (272)
T ss_dssp CTTTEEEEEEEC---------------------------------HHHHH-HHHHHHHTTTCCBCBTT
T ss_pred CCCCcEEEEECC---------------------------------HHHHH-HHHHHHHHcCCChHHcC
Confidence 235789999999 99999 88899999999998765
No 15
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=100.00 E-value=1.4e-34 Score=264.64 Aligned_cols=223 Identities=17% Similarity=0.267 Sum_probs=182.6
Q ss_pred ceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCC
Q psy581 49 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 128 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~ 128 (343)
.+++++|++++.+++++++|+|+.++. ..|+||||+.|.++.++....|+|||++.+.+ +.++|+|+.+
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~------- 70 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG---LRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKV------- 70 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT---CCCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECC-------
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC---CccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEe-------
Confidence 478899999999999999999998754 57899999999999878888999999999876 8899999975
Q ss_pred CCCCCccchhhhcCCCCCeEEEe-cCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC
Q psy581 129 FPDGGKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207 (343)
Q Consensus 129 ~~~~G~~S~~L~~l~~G~~V~v~-GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~ 207 (343)
++|.+|+||+++++||+|.|+ ||+| .|.++. . ...++++||||||||||++++++++...+
T Consensus 71 --~~G~~s~~l~~l~~Gd~v~v~~gp~G--------~f~~~~-~-------~~~~~~vliagG~GitP~~~~l~~l~~~~ 132 (257)
T 2qdx_A 71 --PDGPLTSRLQHLKEGDELMVSRKPTG--------TLVHDD-L-------LPGKHLYLLSTGTGMAPFLSVIQDPETYE 132 (257)
T ss_dssp --TTCTTHHHHTTCCTTCEEEECSCCBC--------SCCGGG-B-------CSCSEEEEEEEGGGGHHHHHHTTCHHHHH
T ss_pred --CCCcchhHHHhCCCCCEEEEecCCCC--------CccCCc-c-------cCCCeEEEEEeceEHHHHHHHHHHHHhcC
Confidence 679999999999999999999 8999 565553 0 02578999999999999999999876532
Q ss_pred CCCccEEEEEecCCchhhhhHHHHH-HHHH-----hC-CCcEEEEEEecCCCCCCcccccccCHHHHHhh----c--C-C
Q psy581 208 TDNTKMSLIFANQSEKDILLREELE-EAAA-----KN-PDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEH----L--F-P 273 (343)
Q Consensus 208 ~~~~~v~li~~~r~~~~~~~~~el~-~l~~-----~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~----~--~-~ 273 (343)
...+++++|++|+.++++|.++|+ ++.+ ++ +.+++++++++++.. ...|+++.....+. + . .
T Consensus 133 -~~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~ 208 (257)
T 2qdx_A 133 -RYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPM 208 (257)
T ss_dssp -HCSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCC
T ss_pred -CCCeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccC
Confidence 236899999999999999999999 8865 32 225999888887632 24677776433221 1 1 1
Q ss_pred CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCC
Q psy581 274 PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEK 338 (343)
Q Consensus 274 ~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~ 338 (343)
...+..+|+||| ++|++ ++.+.|.++|++++
T Consensus 209 ~~~~~~vyvCGp---------------------------------~~m~~-~v~~~l~~~G~~~~ 239 (257)
T 2qdx_A 209 NPQDDRAMICGS---------------------------------PSMLE-ETSAVLDSFGLKIS 239 (257)
T ss_dssp CTTTEEEEEEEC---------------------------------HHHHH-HHHHHHHHTTCCBC
T ss_pred CcCCCEEEEECC---------------------------------HHHHH-HHHHHHHHcCCChH
Confidence 235789999999 99999 88899999999998
No 16
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=100.00 E-value=5.5e-35 Score=269.30 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=183.4
Q ss_pred CCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCC
Q psy581 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH 126 (343)
Q Consensus 47 p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~ 126 (343)
...+++++|++++.+++++++|+|+.++. ..|+||||+.|.++.++....|+|||++.+.+ +.++|+|+.+
T Consensus 16 ~~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~~v~~~----- 86 (271)
T 4fk8_A 16 MSKFDTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE-EHLEFFSIKV----- 86 (271)
T ss_dssp --CEEEEEEEEEEEEETTEEEEEECCCTT---CCCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SSEEEEEECC-----
T ss_pred cccceeEEEEEEEEcCCCEEEEEEEcCCC---CCcCCCCEEEEEccCCCceeeeeEeccCCCCC-CcEEEEEEEE-----
Confidence 34689999999999999999999987653 68999999999999888888999999998754 6799999875
Q ss_pred CCCCCCCccchhhhcCCCCCeEEEe-cCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh
Q psy581 127 PKFPDGGKMSQFLENMKVGEPINVS-GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 205 (343)
Q Consensus 127 ~~~~~~G~~S~~L~~l~~G~~V~v~-GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~ 205 (343)
++|.+|+||+++++|++|.|+ ||+| .|.++.. ...++++||||||||||++++++++..
T Consensus 87 ----~~G~~s~~l~~l~~Gd~v~v~~gP~G--------~~~~~~~--------~~~~~~vliagG~GitP~~~~l~~l~~ 146 (271)
T 4fk8_A 87 ----QNGPLTSRLQHLKVGDPVLIGKKPTG--------TLVADNL--------LPGKTLWMLSTGTGLAPFMSIIRDPDI 146 (271)
T ss_dssp ----TTCTTHHHHTTCCTTCEEEEESCCBC--------SCCGGGB--------CCCSEEEEEECGGGGHHHHHHTTCHHH
T ss_pred ----CCCchhhHHhcCCCCCEEEEecCCCc--------ceecCCc--------CCCCeEEEEECCEEHHHHHHHHHHHHh
Confidence 679999999999999999999 9999 5544430 136889999999999999999999865
Q ss_pred CCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCC-------cEEEEEEecCCCCCCcccccccCHHHHHh----hc--C
Q psy581 206 DPTDNTKMSLIFANQSEKDILLREELEEAAAKNPD-------QFKLWYTVDRPEDGWKYSTGFVSAEMIAE----HL--F 272 (343)
Q Consensus 206 ~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~l~~----~~--~ 272 (343)
.+ ...+++++|++|+.+++++.++|+++.+++++ +++++.+.+++.. ...|+++.....+ .+ .
T Consensus 147 ~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~~l~~~~~~~ 222 (271)
T 4fk8_A 147 YE-RFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASGKLFTDLDMP 222 (271)
T ss_dssp HH-HCSEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHSHHHHHTTCC
T ss_pred cC-CCCCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcchhhhhcccc
Confidence 43 34689999999999999999999998877662 4888887776543 2567887644331 11 1
Q ss_pred -CCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCCCCceE
Q psy581 273 -PPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRF 341 (343)
Q Consensus 273 -~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~i~ 341 (343)
....+..+|+||| ++|++ ++++.|+++|+++++++
T Consensus 223 ~~~~~~~~v~vCGp---------------------------------~~m~~-~v~~~l~~~gv~~~~i~ 258 (271)
T 4fk8_A 223 PFSPEQDRVMLCGS---------------------------------TAMLK-DTTELLKKAGLVEGKNS 258 (271)
T ss_dssp CCCTTTEEEEEEEC---------------------------------HHHHH-HHHHHHHHTTCCBCBTT
T ss_pred cCCCCCCEEEEECC---------------------------------HHHHH-HHHHHHHHcCCchhhcC
Confidence 1245789999999 99999 88899999999998764
No 17
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=100.00 E-value=6.1e-34 Score=268.40 Aligned_cols=247 Identities=18% Similarity=0.273 Sum_probs=190.1
Q ss_pred cccccCCCceEeEEEEEEEEeC-----CCEEEEEEECCCCCccCCCCCCCEEEEEEeeC---------------------
Q psy581 41 LKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGLPIGQHLSLSATIN--------------------- 94 (343)
Q Consensus 41 ~~~~~~p~~~~~~~v~~~~~i~-----~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~--------------------- 94 (343)
......|...+.++|++++.++ ++++.++|..+.. +.|.+|||+.|.++..
T Consensus 6 ~~~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (316)
T 3jqq_A 6 FINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL---FKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTN 82 (316)
T ss_dssp CBTSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC---CCCCTTCEEEECTTCC---------------------
T ss_pred ceeeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC---cceecCcEeEEECCCcccccccccccccccccccccc
Confidence 3557788889999999999998 8899999998543 8999999999987542
Q ss_pred -------------CeeeeeeceeccCCCCCCeEEEEEEEEeecCC---CCCCCCCccchhhhcCCCCCeEEEecCcccee
Q psy581 95 -------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVH---PKFPDGGKMSQFLENMKVGEPINVSGPRGRLA 158 (343)
Q Consensus 95 -------------g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~---~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~ 158 (343)
+....|+|||+|.+.+ +.++|+||+..+... ....++|.+|+||+++++|++|.|+||+|
T Consensus 83 ~~~h~~~~~~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G--- 158 (316)
T 3jqq_A 83 HTNHNNIALSHIKKQRCARLYSISSSNNM-ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG--- 158 (316)
T ss_dssp --------------CCCCEEEEBCSCTTS-SSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEEC---
T ss_pred cccccccccccCCCcccceeeecccCCCC-CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCC---
Confidence 3468999999999876 789999996311100 01224699999999999999999999999
Q ss_pred ecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC---------CCccEEEEEecCCchhhhhHH
Q psy581 159 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT---------DNTKMSLIFANQSEKDILLRE 229 (343)
Q Consensus 159 ~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~---------~~~~v~li~~~r~~~~~~~~~ 229 (343)
.|.++. +. ....+++|||||||||||+++|++++..... ...+++|+|++|+.++++|.+
T Consensus 159 -----~f~l~~-~~-----~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~ 227 (316)
T 3jqq_A 159 -----YFNLPN-DA-----IQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLN 227 (316)
T ss_dssp -----CCCCCT-TH-----HHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHH
T ss_pred -----ceEcCC-cc-----cCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHH
Confidence 666654 00 0015789999999999999999999976531 236899999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHh------hcCCCCCCcEEEEeCCCccccccccCCCCcccce
Q psy581 230 ELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAE------HLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMK 303 (343)
Q Consensus 230 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~------~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~ 303 (343)
+|+++.++++++++++++++++ ++|.+..|+++...... .+. ..+..+|+|||
T Consensus 228 eL~~l~~~~~~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~--~~~~~vyvCGP------------------ 286 (316)
T 3jqq_A 228 ELEYFQKMYPNNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFN--NYKCELYICGK------------------ 286 (316)
T ss_dssp HHHHHHHHCTTTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHH--HTCCEEEEEEC------------------
T ss_pred HHHHHHHhCCCcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhc--cCCeEEEEeCC------------------
Confidence 9999999988679999999886 44556677776643321 111 14679999999
Q ss_pred eeeeccccccccCCCCcchhhhhhhhHhhCCC----CCCceEe
Q psy581 304 TLFSEFNKMKIHEGPPPMINFACKPNLDKLGY----SEKLRFS 342 (343)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~----~~~~i~~ 342 (343)
++|++ ++..+|.++|+ +.++|+.
T Consensus 287 ---------------~~m~~-~v~~~l~~~G~~~~v~~~rih~ 313 (316)
T 3jqq_A 287 ---------------KSIRY-KVMDILKSHDQFDEKKKKRVHV 313 (316)
T ss_dssp ---------------STHHH-HHHHHHHC----CHHHHTTEEE
T ss_pred ---------------HHHHH-HHHHHHHHcCCCcccccccEEE
Confidence 99999 88899999994 8888875
No 18
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=100.00 E-value=1.7e-33 Score=264.49 Aligned_cols=235 Identities=18% Similarity=0.197 Sum_probs=176.3
Q ss_pred ccccccccccccccCCCceEeEEEEEEEEeC-----CCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-----C-eeeee
Q psy581 32 KASRSSKKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-----D-EFVAR 100 (343)
Q Consensus 32 ~~~~~~~~~~~~~~~p~~~~~~~v~~~~~i~-----~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-----g-~~~~R 100 (343)
..+.+.+..+....+|...++++|++++.++ +++++|+|+.+.. ..|+||||+.|.++.. | ....|
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~~~~pGQ~v~l~~~~~~~~~~g~~~~~R 86 (311)
T 3lo8_A 10 LHLESAKEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---VPYWEGQSYGVIPPGENPKKPGAPQNVR 86 (311)
T ss_dssp GGGGCCSSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---SCCCTTCEEEEECSSBCTTSTTCBCCCE
T ss_pred cchhhcccCCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---CcccCCCEEEEeCCCCccccCCCCCCce
Confidence 3445566667778889999999999999999 9999999998753 7899999999998753 2 24789
Q ss_pred eceeccCCCC----CCeEEEEEEEEeecCC----CCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCC
Q psy581 101 AYTPVTSDEH----HGYMDLVVKVYFKNVH----PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 172 (343)
Q Consensus 101 ~yTi~s~~~~----~~~l~~~Vk~~~~~~~----~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~ 172 (343)
+|||++.+.+ .+.++|+||.+.+..+ ....++|.+|+||+++++|++|.|+||+|.+ |..+.
T Consensus 87 ~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~-------~~~~~--- 156 (311)
T 3lo8_A 87 LYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKI-------MLLPE--- 156 (311)
T ss_dssp EEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCT-------TCCCC---
T ss_pred eeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCc-------ccCCC---
Confidence 9999998864 4789999996311000 0111459999999999999999999999942 22221
Q ss_pred CCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCC----CccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEe
Q psy581 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTV 248 (343)
Q Consensus 173 ~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~----~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~ 248 (343)
....++++||||||||||++++++++...... ..+++|+|++|+.++++|.++|+++.+.+++++++++++
T Consensus 157 -----~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~ 231 (311)
T 3lo8_A 157 -----EDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKAL 231 (311)
T ss_dssp -----SCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEE
T ss_pred -----cCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEE
Confidence 01368899999999999999999998764311 257999999999999999999999999988679999999
Q ss_pred cCCCCCCcccccccCHHHHHhhc----CCCCCCcEEEEeCC
Q psy581 249 DRPEDGWKYSTGFVSAEMIAEHL----FPPSPDNLVLMCGP 285 (343)
Q Consensus 249 ~~~~~~~~~~~g~~~~~~l~~~~----~~~~~~~~i~vCGp 285 (343)
+++.++|.+..++++.. +.+.. .....+..+|+|||
T Consensus 232 s~~~~~~~g~~~~v~~~-l~~~~~~~~~~~~~~~~vyvCGp 271 (311)
T 3lo8_A 232 SREQKNRSGGKMYVQDK-IEEYSDEIFKLLDGGAHIYFCGL 271 (311)
T ss_dssp TTTC-------CCHHHH-HHHTHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCcccCCCcceehHH-HHHHHHHHHHhhcCCcEEEEECC
Confidence 98877666666666542 22210 00024679999999
No 19
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=100.00 E-value=7.5e-33 Score=261.48 Aligned_cols=222 Identities=23% Similarity=0.350 Sum_probs=178.0
Q ss_pred ccCCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEee
Q psy581 44 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 123 (343)
Q Consensus 44 ~~~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~ 123 (343)
+..|+.+++++|++++.+++++++|+|+.++......|+||||+.|.++ ++ ..|+|||++.+.+.+.++|+||.+
T Consensus 2 ~p~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~~~~~l~i~Vk~~-- 76 (321)
T 2pia_A 2 TPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVP-NG--SRRTYSLCNDSQERNRYVIAVKRD-- 76 (321)
T ss_dssp CTTTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCCCCCTTCEEEEECT-TS--CEEEEECCSCTTCCSEEEEEEECC--
T ss_pred CCCCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCCCCCCCCEEEEECC-CC--CcEEEEeCCCCCCCCeEEEEEEEe--
Confidence 3466789999999999999999999999887644457999999999986 34 789999999988778999999975
Q ss_pred cCCCCCCCCCc-cchhhh-cCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHH
Q psy581 124 NVHPKFPDGGK-MSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVR 201 (343)
Q Consensus 124 ~~~~~~~~~G~-~S~~L~-~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~ 201 (343)
.+|. +|+||+ ++++||+|.|+||+| .|.++. ..++++|||||+||||+++|++
T Consensus 77 -------~~G~g~S~~L~~~l~~Gd~v~v~gP~g--------~f~l~~----------~~~~~vliagG~GItP~~s~l~ 131 (321)
T 2pia_A 77 -------SNGRGGSISFIDDTSEGDAVEVSLPRN--------EFPLDK----------RAKSFILVAGGIGITPMLSMAR 131 (321)
T ss_dssp -------TTSCSHHHHHHHSCCTTCEEEECCCBC--------CSCCCT----------TCSEEEEEEEGGGHHHHHHHHH
T ss_pred -------cCCcchhHHHHhcCCCCCEEEEeCCcc--------ccccCC----------CCCCEEEEEecccHhHHHHHHH
Confidence 5677 999998 899999999999999 676654 3578999999999999999999
Q ss_pred HHHhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEE
Q psy581 202 HITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVL 281 (343)
Q Consensus 202 ~~~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~ 281 (343)
++...+ . .+++|+|++|+.++++|.++|.++. ++.++++++ ++.. ..|+.....+.+. ......+|
T Consensus 132 ~l~~~~-~-~~v~l~~~~r~~~~~~~~~el~~l~--~~~~~~~~~--~~~~-----~~g~~~~~~ll~~---~~~~~~vy 197 (321)
T 2pia_A 132 QLRAEG-L-RSFRLYYLTRDPEGTAFFDELTSDE--WRSDVKIHH--DHGD-----PTKAFDFWSVFEK---SKPAQHVY 197 (321)
T ss_dssp HHHHHC-S-SEEEEEEEESCGGGCTTHHHHHSTT--TTTTEEEEE--CTTC-----TTSCCCHHHHHSS---CCTTEEEE
T ss_pred HHHHcC-C-CcEEEEEEECChhhhHHHHHHhcCc--cCCeEEEEE--CCCc-----ccCccCHHHHhcc---cCCCCEEE
Confidence 998754 2 6899999999999999999999885 334677764 3322 1345544333322 23568999
Q ss_pred EeCCCc--cccccccCCCCcccceeeeecccc
Q psy581 282 MCGPPR--KTVKNNLKPEDKKEMKTLFSEFNK 311 (343)
Q Consensus 282 vCGp~~--~~~~~~l~~~~~~~~~~~~~~~~~ 311 (343)
+|||.+ +.+++.|+. ++..++|+|.|..
T Consensus 198 vCGP~~m~~~v~~~l~~--~~~~~i~~E~F~~ 227 (321)
T 2pia_A 198 CCGPQALMDTVRDMTGH--WPSGTVHFESFGA 227 (321)
T ss_dssp EESCHHHHHHHHHHTTT--SCTTCEEEECCCC
T ss_pred EECCHHHHHHHHHHHHh--CCHhhEEEEecCC
Confidence 999966 667777766 6677777777763
No 20
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=100.00 E-value=1.5e-32 Score=258.47 Aligned_cols=225 Identities=21% Similarity=0.281 Sum_probs=172.4
Q ss_pred cccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeC---C-eeeeeeceeccCCC--
Q psy581 41 LKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATIN---D-EFVARAYTPVTSDE-- 109 (343)
Q Consensus 41 ~~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~---g-~~~~R~yTi~s~~~-- 109 (343)
+.....+..++.++|++++.+++ +++.|+|+.+.. ..|+||||+.|.++.. + ....|+|||++.+.
T Consensus 28 ~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~ 104 (314)
T 1fnb_A 28 TVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGD 104 (314)
T ss_dssp CCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCT
T ss_pred CccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCccc
Confidence 34556778889999999999998 899999998753 6799999999998642 2 24689999999875
Q ss_pred --CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEE
Q psy581 110 --HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 187 (343)
Q Consensus 110 --~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~i 187 (343)
+.+.++|+||.+.+.........|.+|+||+++++|++|.|+||+|. .|.++. ...++++||
T Consensus 105 ~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-------~~~~~~---------~~~~~~vlI 168 (314)
T 1fnb_A 105 FGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK-------EMLMPK---------DPNATIIML 168 (314)
T ss_dssp TSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECS-------TTCCBS---------CTTCEEEEE
T ss_pred CCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCC-------ceeCCC---------CCCCCEEEE
Confidence 35889999996322110001135889999999999999999999994 223332 125789999
Q ss_pred EcCcchHhHHHHHHHHHhCCC----CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccC
Q psy581 188 AGGTGITPMLQLVRHITKDPT----DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVS 263 (343)
Q Consensus 188 A~GtGIap~~sll~~~~~~~~----~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 263 (343)
||||||||++++++++..... ...+++|+|++|+.++++|.+||+++.+++++++++++++++++++|.+..|+++
T Consensus 169 agGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~ 248 (314)
T 1fnb_A 169 GTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQ 248 (314)
T ss_dssp EEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHH
T ss_pred eCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceech
Confidence 999999999999999876531 1368999999999999999999999999887669999999987666655566665
Q ss_pred HHHHHhhc----C-CCCCCcEEEEeCC
Q psy581 264 AEMIAEHL----F-PPSPDNLVLMCGP 285 (343)
Q Consensus 264 ~~~l~~~~----~-~~~~~~~i~vCGp 285 (343)
.. +.+.+ . ....+..+|+|||
T Consensus 249 ~~-l~~~~~~~~~~~~~~~~~vyvCGp 274 (314)
T 1fnb_A 249 TR-MAQYAVELWEMLKKDNTYVYMCGL 274 (314)
T ss_dssp HH-HHTTHHHHHHHTTSTTEEEEEEEC
T ss_pred HH-HHHhHHHHHHHHhcCCeEEEEECC
Confidence 42 32211 0 0124678999999
No 21
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=100.00 E-value=5.5e-32 Score=263.01 Aligned_cols=242 Identities=23% Similarity=0.342 Sum_probs=186.0
Q ss_pred ccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEee---CCe-eeeeeceeccCCCC--
Q psy581 42 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATI---NDE-FVARAYTPVTSDEH-- 110 (343)
Q Consensus 42 ~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~---~g~-~~~R~yTi~s~~~~-- 110 (343)
...+.+..++.++|++++.+++ +++.|+|+.+.. ...|+||||+.|.++. ++. ...|+|||++.+.+
T Consensus 114 ~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~ 191 (402)
T 2b5o_A 114 VNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEG--DLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDM 191 (402)
T ss_dssp CCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTS--CCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTT
T ss_pred cccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCC--CCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCcccc
Confidence 3456677789999999999999 999999998754 3789999999998763 233 47899999998763
Q ss_pred --CCeEEEEEEEEeecC-CCCCCCCCccchhhhcCCCC-CeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEE
Q psy581 111 --HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVG-EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 186 (343)
Q Consensus 111 --~~~l~~~Vk~~~~~~-~~~~~~~G~~S~~L~~l~~G-~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~ 186 (343)
.+.++|+||...+.. .....+.|.+|+||+++++| |.|.|.||+|. .|.++. ...++++|
T Consensus 192 ~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~-------~~~l~~---------~~~~~vvl 255 (402)
T 2b5o_A 192 EDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGK-------EMLLPD---------DEDATVVM 255 (402)
T ss_dssp TSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECS-------TTCCCS---------CTTCEEEE
T ss_pred CCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCC-------cccCCc---------cCCCCEEE
Confidence 588999999621110 00001368999999999999 99999999995 233332 12578999
Q ss_pred EEcCcchHhHHHHHHHHHhCCC----CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCccccccc
Q psy581 187 IAGGTGITPMLQLVRHITKDPT----DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFV 262 (343)
Q Consensus 187 iA~GtGIap~~sll~~~~~~~~----~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 262 (343)
|||||||||++++++++..... ...+++|+|++|+.++++|.+||+++..+++++++++++++++.++|.+..+++
T Consensus 256 IAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v 335 (402)
T 2b5o_A 256 LATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYV 335 (402)
T ss_dssp EEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCH
T ss_pred EEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccch
Confidence 9999999999999999886541 136899999999999999999999999988867999999998766665555555
Q ss_pred CHHHH------HhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 263 SAEMI------AEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 263 ~~~~l------~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
+..+. .+.+. ..+..+|+||| ++|++ ++..+|.++|..
T Consensus 336 ~~~l~~~~~~l~~~l~--~~~~~vyvCGP---------------------------------~~M~~-~v~~~L~~~g~~ 379 (402)
T 2b5o_A 336 QSRVSEYADELFEMIQ--KPNTHVYMCGL---------------------------------KGMQP-PIDETFTAEAEK 379 (402)
T ss_dssp HHHHHHTHHHHHHHHT--STTEEEEEEEC---------------------------------GGGHH-HHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhc--cCCcEEEEECC---------------------------------HHHHH-HHHHHHHHHHHH
Confidence 44211 11222 24678999999 99999 778888876654
Q ss_pred C
Q psy581 337 E 337 (343)
Q Consensus 337 ~ 337 (343)
.
T Consensus 380 ~ 380 (402)
T 2b5o_A 380 R 380 (402)
T ss_dssp T
T ss_pred c
Confidence 3
No 22
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=100.00 E-value=1.8e-32 Score=251.50 Aligned_cols=210 Identities=19% Similarity=0.273 Sum_probs=169.6
Q ss_pred EeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCC
Q psy581 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFP 130 (343)
Q Consensus 51 ~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~ 130 (343)
++++|++++.+++++++|+|+.+.. ...|+||||+.|.++..+....|+|||++.+.+.+.++|+||.+
T Consensus 6 ~~~~V~~~~~~t~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~--------- 74 (262)
T 1ep3_B 6 EMMTVVSQREVAYNIFEMVLKGTLV--DEMDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG--------- 74 (262)
T ss_dssp EEEEEEEEEEEETTEEEEEEESGGG--GGCCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECC---------
T ss_pred cceEEEEEEEecCCEEEEEEEcCcc--cccCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEe---------
Confidence 4799999999999999999997652 46789999999999865567899999999887778999999975
Q ss_pred CCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCC
Q psy581 131 DGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDN 210 (343)
Q Consensus 131 ~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~ 210 (343)
+.|.+|+||+++++||+|.|+||+|+ .|.++. + ...++++||||||||||++++++++...+
T Consensus 75 ~~G~~S~~l~~l~~Gd~v~v~gP~G~-------~f~l~~-~-------~~~~~~lliagGtGitP~~s~l~~l~~~~--- 136 (262)
T 1ep3_B 75 DETTGTYKLSKLESGAKVDVMGPLGN-------GFPVAE-V-------TSTDKILIIGGGIGVPPLYELAKQLEKTG--- 136 (262)
T ss_dssp CTTSHHHHHHTCCTTCEEEEEEEESB-------CCCCTT-C-------CTTSEEEEEEEGGGSHHHHHHHHHHHHHT---
T ss_pred cCCchHHHHhcCCCCCEEEEEcccCC-------CccCCC-c-------cCCCeEEEEECcCcHHHHHHHHHHHHHcC---
Confidence 57999999999999999999999994 276654 0 02578999999999999999999998753
Q ss_pred ccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCcccc
Q psy581 211 TKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTV 290 (343)
Q Consensus 211 ~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~ 290 (343)
.+++|+|++|+.++++|.++|+++... +++++.+ +++....|++++ .+.+.++ +...+|+|||
T Consensus 137 ~~v~l~~~~r~~~~~~~~~el~~l~~~-----~~~~~~~---~~~~~~~g~v~~-~l~~~~~---~~~~vyvCGp----- 199 (262)
T 1ep3_B 137 CQMTILLGFASENVKILENEFSNLKNV-----TLKIATD---DGSYGTKGHVGM-LMNEIDF---EVDALYTCGA----- 199 (262)
T ss_dssp CEEEEEEEESSGGGCCCHHHHHTSTTE-----EEEEEET---TCSSSEESCHHH-HHHHCCS---CCSEEEEESC-----
T ss_pred CeEEEEEEcCCHHHhhhHHHHhhhccC-----cEEEEEC---CCCCcceeehHH-HHHhhcc---CCCEEEEECC-----
Confidence 689999999999999999999886432 3343322 234446788876 5665443 2579999999
Q ss_pred ccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 291 KNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
++|++ ++++ |.++|++
T Consensus 200 ----------------------------~~m~~-~v~~-l~~~gv~ 215 (262)
T 1ep3_B 200 ----------------------------PAMLK-AVAK-KYDQLER 215 (262)
T ss_dssp ----------------------------HHHHH-HHHH-HTTTCSS
T ss_pred ----------------------------HHHHH-HHHH-HHhCCCC
Confidence 78887 6666 7777776
No 23
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=100.00 E-value=1.7e-31 Score=249.96 Aligned_cols=226 Identities=23% Similarity=0.337 Sum_probs=169.5
Q ss_pred ccccccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeC---Ce-eeeeeceeccCCC-
Q psy581 40 ELKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDE- 109 (343)
Q Consensus 40 ~~~~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~---g~-~~~R~yTi~s~~~- 109 (343)
.+.....+...+.++|++++.+++ +++.++|+.+... +.|+||||+.|.++.. +. ...|+|||++.+.
T Consensus 11 ~~~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~--~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~ 88 (304)
T 2bmw_A 11 VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN--LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHG 88 (304)
T ss_dssp CCCCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC--CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTT
T ss_pred CcccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc--cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcc
Confidence 334566777788999999999999 8999999987542 6799999999998642 22 4689999999875
Q ss_pred ---CCCeEEEEEEEEeecCCC-CCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEE
Q psy581 110 ---HHGYMDLVVKVYFKNVHP-KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLS 185 (343)
Q Consensus 110 ---~~~~l~~~Vk~~~~~~~~-~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv 185 (343)
+.+.++|+||...+.... .....|.+|+||+++++|++|.|+||+|. .|.++. ...++++
T Consensus 89 ~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~-------~~~~~~---------~~~~~~v 152 (304)
T 2bmw_A 89 DDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGK-------EMLLPD---------DPEANVI 152 (304)
T ss_dssp TTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECS-------SSCCCS---------CTTCEEE
T ss_pred cCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCC-------ceeCCC---------CCCCCEE
Confidence 358999999962111000 00125889999999999999999999994 233332 1257899
Q ss_pred EEEcCcchHhHHHHHHHHHhCC------C--CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcc
Q psy581 186 MIAGGTGITPMLQLVRHITKDP------T--DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKY 257 (343)
Q Consensus 186 ~iA~GtGIap~~sll~~~~~~~------~--~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~ 257 (343)
||||||||||+++++++++... . ...+++|+|++|+.++++|.+||+++.++++++++++++++++.+.|.+
T Consensus 153 lIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~ 232 (304)
T 2bmw_A 153 MLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQG 232 (304)
T ss_dssp EEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTS
T ss_pred EEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCC
Confidence 9999999999999999986431 0 1367999999999999999999999999887669999999887655443
Q ss_pred cccccCHH------HHHhhcCCCCCCcEEEEeCC
Q psy581 258 STGFVSAE------MIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 258 ~~g~~~~~------~l~~~~~~~~~~~~i~vCGp 285 (343)
..++++.. .+.+.+. ..+..+|+|||
T Consensus 233 ~~~~v~~~l~~~~~~l~~~~~--~~~~~vyvCGp 264 (304)
T 2bmw_A 233 GRMYIQDRVAEHADQLWQLIK--NQKTHTYICGP 264 (304)
T ss_dssp SBCCHHHHHHHTHHHHHHHHT--STTEEEEEEEC
T ss_pred CcceehHHHHHhHHHHHHHhh--cCCcEEEEECC
Confidence 34444321 1222232 24678999999
No 24
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.97 E-value=3.9e-31 Score=248.71 Aligned_cols=239 Identities=15% Similarity=0.288 Sum_probs=178.5
Q ss_pred ccccCCCceEeEEEEEEEEeCCC--------------EEEEEEECCCCCccCCCCCCCEEEEEEeeC---Ce--------
Q psy581 42 KTLVDPDVKVPLKLKEKIEINHD--------------TRCFRFELPSAEHVLGLPIGQHLSLSATIN---DE-------- 96 (343)
Q Consensus 42 ~~~~~p~~~~~~~v~~~~~i~~~--------------~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~---g~-------- 96 (343)
.....+...+.++|++++.++++ +++|+|+.+.. .+.|+||||+.|.++.. +.
T Consensus 13 ~~~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~ 90 (314)
T 2rc5_A 13 INLFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AYPYVIGQSGGVIPPGEDPEKKAKGLADVG 90 (314)
T ss_dssp CCSBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TCCCCTTCEEEEECSSBCHHHHHTTCSCCB
T ss_pred cCCCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cCcccCCCEEEEECCCCccccCccchhhcC
Confidence 34456667789999999999998 99999998653 36799999999998643 21
Q ss_pred eeeeeceeccCCC----CCCeEEEEEEEEeecC-CCCCCCCCccchhhhcCCCCCeEEEecCccceeecCCCceeeccCC
Q psy581 97 FVARAYTPVTSDE----HHGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 171 (343)
Q Consensus 97 ~~~R~yTi~s~~~----~~~~l~~~Vk~~~~~~-~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~ 171 (343)
...|+|||++.+. +.+.++|+||.+.+.. +.+..+.|.+|+||+++++|++|.|+||+|.+ |.++.
T Consensus 91 ~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~-------~~~~~-- 161 (314)
T 2rc5_A 91 YTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKK-------FLLPN-- 161 (314)
T ss_dssp CCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSS-------SCCCS--
T ss_pred CCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCc-------eeCCC--
Confidence 3679999999875 4688999999741100 00000257899999999999999999999942 22221
Q ss_pred CCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCC--CCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEec
Q psy581 172 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT--DNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVD 249 (343)
Q Consensus 172 ~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~--~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 249 (343)
....++++||||||||||++++++++..... ...+++|+|++|+.++++|.++|+++..+++ +++++++++
T Consensus 162 ------~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s 234 (314)
T 2rc5_A 162 ------TDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLESKHK-NFKLITAIS 234 (314)
T ss_dssp ------SCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHHHHHS-SEEEEEEET
T ss_pred ------CCCCCCEEEEECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCC-cEEEEEEEC
Confidence 0135789999999999999999999976531 1368999999999999999999999988777 599999998
Q ss_pred CCCCCC-cccccccCHHH------HHhhcCCCCCCcEEEEe-CCCccccccccCCCCcccceeeeeccccccccCCCCcc
Q psy581 250 RPEDGW-KYSTGFVSAEM------IAEHLFPPSPDNLVLMC-GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPM 321 (343)
Q Consensus 250 ~~~~~~-~~~~g~~~~~~------l~~~~~~~~~~~~i~vC-Gp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (343)
++.+++ .+..|+++... +.+.+.. .. .+|+| || ++|
T Consensus 235 ~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~--~~-~~yvCGGp---------------------------------~~m 278 (314)
T 2rc5_A 235 REEKNSFDGGRMYISHRVREQAEAVKKILNG--GG-RFYICGGP---------------------------------KGM 278 (314)
T ss_dssp TTCBCTTTSSBCCHHHHHHHTHHHHHHHHHH--TC-EEEEEESS---------------------------------TTT
T ss_pred CCCCcccCCCceehhHHHHHhHHHHHHHhhc--CC-eEEEeCCc---------------------------------HHH
Confidence 765433 44455554321 1121211 23 35999 99 999
Q ss_pred hhhhhhhhHhhCCC
Q psy581 322 INFACKPNLDKLGY 335 (343)
Q Consensus 322 ~~~~~~~~L~~~g~ 335 (343)
++ ++++.|.++|+
T Consensus 279 ~~-~v~~~L~~~g~ 291 (314)
T 2rc5_A 279 EK-GVIEEIQKISG 291 (314)
T ss_dssp HH-HHHHHHHHHHT
T ss_pred HH-HHHHHHHHHHh
Confidence 99 88889988877
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.97 E-value=5.9e-30 Score=233.66 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=165.3
Q ss_pred CCCceEeEEEEEEEEeCCCEEEEEEECCCCCccCCCCCCCEEEEEEeeC-CeeeeeeceeccCCCCCCeEEEEEEEEeec
Q psy581 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKVYFKN 124 (343)
Q Consensus 46 ~p~~~~~~~v~~~~~i~~~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~-g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~ 124 (343)
.+..+++++|++++.+++++++|+|+.++......+.||||+.|.++.+ +....|+||+++.+. +.++|.++.+
T Consensus 4 ~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~--- 78 (252)
T 2gpj_A 4 NKPAPRELEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLH--- 78 (252)
T ss_dssp --CCCEEEEEEEEEEEETTEEEEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECC---
T ss_pred CCCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEe---
Confidence 4556889999999999999999999987654434689999999999863 456889999999765 6788888763
Q ss_pred CCCCCCCC-CccchhhhcCCCCCeEEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHH
Q psy581 125 VHPKFPDG-GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203 (343)
Q Consensus 125 ~~~~~~~~-G~~S~~L~~l~~G~~V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~ 203 (343)
.+ |.+|+||+++++||+|.|.||.| .|.++. ..++++||||||||||+++|++++
T Consensus 79 ------~~~G~~S~~l~~l~~Gd~l~v~gP~G--------~f~l~~----------~~~~~lliagGtGitPi~s~l~~l 134 (252)
T 2gpj_A 79 ------DTDGPASSWAKTAQVGELIQIGGPGL--------KKLINF----------EADWFLLAGDMTALPAISVNLAKL 134 (252)
T ss_dssp ------SSCCHHHHHHHHCCTTCEEEEEEEEC--------CCCCCS----------SSSEEEEEEEGGGHHHHHHHHHHS
T ss_pred ------CCCCcHHHHHhhCCCCCEEEEecCCC--------CCcCCC----------CCceEEEEcchhhHHHHHHHHHhC
Confidence 34 89999999999999999999999 676654 247899999999999999999997
Q ss_pred HhCCCCCccEEEEEecCCchhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCHHHHHhhcCCCCCCcEEEEe
Q psy581 204 TKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMC 283 (343)
Q Consensus 204 ~~~~~~~~~v~li~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vC 283 (343)
.. ..++++++.+++.+++...+ ..+ +++++++.++... + .|....+.+.+. ..+.....+|+|
T Consensus 135 ~~----~~~~~~~~~~~~~~d~~~l~-------~~~-~~~v~~~~~~~~~-~---~g~~~~~~l~~~-~~~~~~~~vy~C 197 (252)
T 2gpj_A 135 PN----NAVGYAVIEVLSEADIQPLV-------HPE-HVELHWVINPEAD-P---EGRPLVERIAQL-PWLAGEPAVWIA 197 (252)
T ss_dssp CT----TCEEEEEEEESSGGGCCCCC-------CCT-EEEEEEEECSSCC-T---TCHHHHHHHTTS-CCCSSCEEEEEE
T ss_pred CC----CCcEEEEEEECCHHHhhccc-------CCC-CcEEEEEeCCCCC-c---ccHHHHHHHHhc-cCCCCCcEEEEE
Confidence 43 24788888999988765321 123 5888777655322 1 132222333332 112246789999
Q ss_pred CCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHh-hCCCCCCceEe
Q psy581 284 GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLD-KLGYSEKLRFS 342 (343)
Q Consensus 284 Gp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~g~~~~~i~~ 342 (343)
|| ++||+ +++..|. ++|++.++||+
T Consensus 198 GP---------------------------------~~m~~-av~~~l~~~~G~~~~~i~~ 223 (252)
T 2gpj_A 198 CE---------------------------------FNSMR-ALRRHFKQAHALPKSHFYT 223 (252)
T ss_dssp EE---------------------------------HHHHH-HHHHHHHHHCCCCGGGEEE
T ss_pred cC---------------------------------HHHHH-HHHHHHHHhcCCCHHHeEE
Confidence 99 99999 8888887 79999999985
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.94 E-value=6.7e-26 Score=218.01 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=164.1
Q ss_pred cCCCceEeEEEEEEEEeCCC-----EEEEEEECCCCCccCCCCCCCEEEEEEeeCC------------------------
Q psy581 45 VDPDVKVPLKLKEKIEINHD-----TRCFRFELPSAEHVLGLPIGQHLSLSATIND------------------------ 95 (343)
Q Consensus 45 ~~p~~~~~~~v~~~~~i~~~-----~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g------------------------ 95 (343)
.+....+.++|++++.+++. ++.|+|+.... .+.|+||+++.|...++.
T Consensus 6 ~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~--~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~~~~ 83 (374)
T 1ddg_A 6 YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDS--GLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKT 83 (374)
T ss_dssp CBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTS--CCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETTEE
T ss_pred CCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCC--CcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEECCCC
Confidence 44555677899999999863 78899987543 278999999999865320
Q ss_pred -------------------------------------------------------------------------eeeeeec
Q psy581 96 -------------------------------------------------------------------------EFVARAY 102 (343)
Q Consensus 96 -------------------------------------------------------------------------~~~~R~y 102 (343)
....|+|
T Consensus 84 ~tl~~~l~~~~di~~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~~~~~~~vl~~~p~~~~~Gq~v~l~~~~~~R~Y 163 (374)
T 1ddg_A 84 LPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLY 163 (374)
T ss_dssp EEHHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHHSCHHHHHHHSCCCCCHHHHHHHSCBCCCEEE
T ss_pred ccHHHHHHhcccCCCCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHcCCCHHHHHHHCCCCCCHHHHHhhccCCCCccc
Confidence 1246999
Q ss_pred eeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhc-CCCCCeEEEec-CccceeecCCCceeeccCCCCCCCCCC
Q psy581 103 TPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSG-PRGRLAYLGNGEFHIRAVSKKDPPTNL 179 (343)
Q Consensus 103 Ti~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~-l~~G~~V~v~G-P~G~~~~~~~~~f~l~~~~~~~~~~~~ 179 (343)
||+|++.+ ++.++|+|+++.+..+ ...+.|.+|+||++ +++|++|.|.| |.| .|.++. +
T Consensus 164 SIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g--------~F~lp~-~-------- 225 (374)
T 1ddg_A 164 SIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHND--------NFRLPA-N-------- 225 (374)
T ss_dssp EBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSCEEEEEEECCT--------TSCCCS-S--------
T ss_pred eecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCCEEEEEEeeCC--------CccCCC-C--------
Confidence 99999875 6899999998643222 22235899999987 99999999999 555 677664 1
Q ss_pred CcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcEEEEEEecCCCCCCccc
Q psy581 180 KVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYS 258 (343)
Q Consensus 180 ~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 258 (343)
..++++|||+||||||++++++++...+ ...+++|+|++|+. ++++|.+||+++.++++. +++++++++++..+.|.
T Consensus 226 ~~~piimIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~~-~~l~~a~Srd~~~k~yV 303 (374)
T 1ddg_A 226 PETPVIMIGPGTGIAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVL-TRIDLAWSRDQKEKVYV 303 (374)
T ss_dssp TTSCEEEECCGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTTHHHHHHHHHTTSC-CEEEEEETTSSSSCCCH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhHHHHHHHHHHhCCC-cEEEEEEecCCCCCccH
Confidence 2578999999999999999999987654 35789999999998 799999999999887763 78888888876544555
Q ss_pred ccccCH--HHHHhhcCCCCCCcEEEEeC-C
Q psy581 259 TGFVSA--EMIAEHLFPPSPDNLVLMCG-P 285 (343)
Q Consensus 259 ~g~~~~--~~l~~~~~~~~~~~~i~vCG-p 285 (343)
++++.+ +.+.+.+. .+..+|+|| |
T Consensus 304 q~~l~~~~~~l~~~l~---~~~~vYvCG~p 330 (374)
T 1ddg_A 304 QDKLREQGAELWRWIN---DGAHIYVCGDA 330 (374)
T ss_dssp HHHHHHTHHHHHHHHH---TTCEEEEEECT
T ss_pred HHHHHHhHHHHHHHHh---CCcEEEEECCC
Confidence 555543 22333332 367899999 8
No 27
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.89 E-value=4.1e-23 Score=199.66 Aligned_cols=167 Identities=23% Similarity=0.333 Sum_probs=123.1
Q ss_pred eeeeeceeccCCCC-CCeEEEEEEEEeecCC-CCCCCCCccchhhhcCCCCCeEE--EecCccceeecCCCceeeccCCC
Q psy581 97 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVH-PKFPDGGKMSQFLENMKVGEPIN--VSGPRGRLAYLGNGEFHIRAVSK 172 (343)
Q Consensus 97 ~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~-~~~~~~G~~S~~L~~l~~G~~V~--v~GP~G~~~~~~~~~f~l~~~~~ 172 (343)
...|+|||+|+|.. ++.++|+|+++..... .+....|.+|+||+++++|++|. |+||+| .|.++. +
T Consensus 169 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g--------~F~lp~-~- 238 (393)
T 4dql_A 169 IRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS--------EFTLPK-D- 238 (393)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS--------CCCCCS-S-
T ss_pred CcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC--------CcccCc-c-
Confidence 47899999999875 5889999987533210 01112388999999999999998 789999 677765 1
Q ss_pred CCCCCCCCcceEEEEEcCcchHhHHHHHHHH---HhCCCCCccEEEEEecCC-chhhhhHHHHHHHHHhCCCcEEEEEEe
Q psy581 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHI---TKDPTDNTKMSLIFANQS-EKDILLREELEEAAAKNPDQFKLWYTV 248 (343)
Q Consensus 173 ~~~~~~~~~~~vv~iA~GtGIap~~sll~~~---~~~~~~~~~v~li~~~r~-~~~~~~~~el~~l~~~~~~~~~~~~~~ 248 (343)
...+++|||+||||||+++++++. ...+....+++|+|++|+ .++++|.+||+++.+. + .+++++++
T Consensus 239 -------~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~-~l~l~~a~ 309 (393)
T 4dql_A 239 -------PETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-G-IITLHTAF 309 (393)
T ss_dssp -------TTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-T-SCEEEEEE
T ss_pred -------CCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-C-CeEEEEEE
Confidence 246899999999999999999984 233323468999999999 5899999999999875 3 58999999
Q ss_pred cCCC-CCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 249 DRPE-DGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 249 ~~~~-~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
++++ ....|.+.++.+ +.+.+.+ ..+..+|+|||
T Consensus 310 Sr~~~~~k~yVq~~l~~~~~~l~~~l---~~~~~vYvCGp 346 (393)
T 4dql_A 310 SRMPNQPKTYVQHVMEQDGKKLIELL---DQGAHFYICGD 346 (393)
T ss_dssp SSCTTSCCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEE
T ss_pred eCCCCCCCcchhhHHHhCHHHHHHHH---hCCcEEEEECC
Confidence 8843 333334444322 2333333 24689999999
No 28
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.89 E-value=1.8e-23 Score=204.90 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=122.1
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCC--CCCCCCccchhhhcCCCCCeEEEec-CccceeecCCCceeeccCCCC
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHP--KFPDGGKMSQFLENMKVGEPINVSG-PRGRLAYLGNGEFHIRAVSKK 173 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~--~~~~~G~~S~~L~~l~~G~~V~v~G-P~G~~~~~~~~~f~l~~~~~~ 173 (343)
..|+|||+|++.+ ++.++|+|+++.+.+.. ...+.|.+|+||+++++|++|.|.| |.| .|.++. +
T Consensus 209 ~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g--------~F~lp~-~-- 277 (435)
T 1f20_A 209 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP--------SFHLPR-N-- 277 (435)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCT--------TSSCCS-C--
T ss_pred CCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCC--------CccCCC-C--
Confidence 5699999999875 68899999864222100 0112489999999999999999999 566 676664 1
Q ss_pred CCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC----CCCCccEEEEEecCCch-hhhhHHHHHHHHHhCCCcEEEEEEe
Q psy581 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQSEK-DILLREELEEAAAKNPDQFKLWYTV 248 (343)
Q Consensus 174 ~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~----~~~~~~v~li~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~ 248 (343)
...+++||||||||||++++++++... .....+++|+|++|+.+ |++|.+||+++...++ .+++++++
T Consensus 278 ------~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~l~~a~ 350 (435)
T 1f20_A 278 ------PQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGV-FRELYTAY 350 (435)
T ss_dssp ------TTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTS-EEEEEEEE
T ss_pred ------CCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHcCC-ccEEEEEE
Confidence 257899999999999999999988652 11347899999999997 7899999999988765 37888888
Q ss_pred cCCCCC-CcccccccCHH---HHHhhcCCCCCCcEEEEeCC
Q psy581 249 DRPEDG-WKYSTGFVSAE---MIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 249 ~~~~~~-~~~~~g~~~~~---~l~~~~~~~~~~~~i~vCGp 285 (343)
+++... ..|.++++.+. .+.+.+. ..+..+|+|||
T Consensus 351 Sr~~~~~k~yVq~~l~~~l~~~~~~~l~--~~~~~vYvCGp 389 (435)
T 1f20_A 351 SREPDRPKKYVQDVLQEQLAESVYRALK--EQGGHIYVCGD 389 (435)
T ss_dssp SSCTTSCCCCHHHHHHHHSHHHHHHHHH--TSCCEEEEEEC
T ss_pred CCCCCCCCcchhhHHHhhhHHHHHHHHh--cCCcEEEEeCC
Confidence 887543 23333333221 1111121 24678999999
No 29
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.87 E-value=9.3e-23 Score=209.98 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=134.8
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCC--CCCCCCccchhhhcCCCCCeEEEec-CccceeecCCCceeeccCCCC
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHP--KFPDGGKMSQFLENMKVGEPINVSG-PRGRLAYLGNGEFHIRAVSKK 173 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~--~~~~~G~~S~~L~~l~~G~~V~v~G-P~G~~~~~~~~~f~l~~~~~~ 173 (343)
..|+|||++.|.+ ++.++|+|++..+.... ...+.|.+|+||+++++|+.|.|.+ |.| .|.++. +
T Consensus 430 ~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g--------~F~lp~-~-- 498 (688)
T 1tll_A 430 QPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP--------SFHLPR-N-- 498 (688)
T ss_dssp CCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCG--------GGSCCS-C--
T ss_pred ceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCC--------CcccCc-C--
Confidence 5799999999875 68899999864322100 0112489999999999999999999 666 677664 1
Q ss_pred CCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC----CCCCccEEEEEecCCch-hhhhHHHHHHHHHhCCCcEEEEEEe
Q psy581 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQSEK-DILLREELEEAAAKNPDQFKLWYTV 248 (343)
Q Consensus 174 ~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~----~~~~~~v~li~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~~~ 248 (343)
...+++||||||||||++++++++... +....+++|+|++|+.+ |++|.+||+++...++ .+++++++
T Consensus 499 ------~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~~~-~~~l~~a~ 571 (688)
T 1tll_A 499 ------PQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGV-FRELYTAY 571 (688)
T ss_dssp ------TTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHTTS-EEEEEEEE
T ss_pred ------CCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHcCC-ceEEEEEE
Confidence 257899999999999999999998652 12357899999999998 7899999999988776 37888888
Q ss_pred cCCCCC-CcccccccCHH---HHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhh
Q psy581 249 DRPEDG-WKYSTGFVSAE---MIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINF 324 (343)
Q Consensus 249 ~~~~~~-~~~~~g~~~~~---~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (343)
+++... ..|.++++.+. .+.+.+. ..+..+|+||| ++|++
T Consensus 572 Sr~~~~~k~yVq~~l~~~l~~~l~~~l~--~~~~~vYvCGp---------------------------------~~M~~- 615 (688)
T 1tll_A 572 SREPDRPKKYVQDVLQEQLAESVYRALK--EQGGHIYVCGD---------------------------------VTMAA- 615 (688)
T ss_dssp SSCTTSCCCCHHHHHHHSSHHHHHHHHH--TSCCEEEEEEE---------------------------------HHHHH-
T ss_pred CCCCCCCccchhhhhHHhHHHHHHHhhc--cCCcEEEEeCC---------------------------------HHHHH-
Confidence 887543 23344444321 1111221 24679999999 99999
Q ss_pred hhhhhHhhC
Q psy581 325 ACKPNLDKL 333 (343)
Q Consensus 325 ~~~~~L~~~ 333 (343)
.+..+|.++
T Consensus 616 ~V~~~L~~i 624 (688)
T 1tll_A 616 DVLKAIQRI 624 (688)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777877765
No 30
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.87 E-value=2.7e-22 Score=196.90 Aligned_cols=168 Identities=16% Similarity=0.251 Sum_probs=123.7
Q ss_pred eeeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCC------eEEEecCccceeecCCCceeecc
Q psy581 97 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE------PINVSGPRGRLAYLGNGEFHIRA 169 (343)
Q Consensus 97 ~~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~------~V~v~GP~G~~~~~~~~~f~l~~ 169 (343)
...|+|||+|++.. ++.++|+|++..+....+..+.|.+|+||+++.+|+ .|.|.+|.| .|.++.
T Consensus 232 l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g--------~F~lp~ 303 (458)
T 3qfs_A 232 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLPF 303 (458)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECC--------SCCCCS
T ss_pred CcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCC--------CcccCC
Confidence 47899999999864 688999997654333223345699999998877765 599999999 677765
Q ss_pred CCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHH---hCCCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcEEEE
Q psy581 170 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT---KDPTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQFKLW 245 (343)
Q Consensus 170 ~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~---~~~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~~~~ 245 (343)
+ ...+++|||+||||||+++++++.. ..+....+++|+|++|+. +|++|.+||+++.++++. ++++
T Consensus 304 -~--------~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~g~l-~~l~ 373 (458)
T 3qfs_A 304 -K--------ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGAL-TQLN 373 (458)
T ss_dssp -S--------TTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTSS-SEEE
T ss_pred -C--------CCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHcCCC-CEEE
Confidence 1 2578999999999999999999853 222134689999999996 799999999999988652 4788
Q ss_pred EEecCCCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 246 YTVDRPEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
+++++++....|.+.++.+ +.+.+.+ ..+..+|+|||
T Consensus 374 ~a~SRd~~~k~yVqd~l~~~~~~l~~~l---~~~~~vYvCGp 412 (458)
T 3qfs_A 374 VAFSREQSHKVYVQHLLKQDREHLWKLI---EGGAHIYVCGD 412 (458)
T ss_dssp EEETTSSSSCCCHHHHHHHTHHHHHHHH---HTTCEEEEEEE
T ss_pred EEEECCCCCcccHhHHHHHhHHHHHHHh---cCCCEEEEECC
Confidence 8888865433333333322 2233333 24689999999
No 31
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.87 E-value=1.1e-22 Score=203.77 Aligned_cols=170 Identities=20% Similarity=0.288 Sum_probs=120.9
Q ss_pred eeeeceeccCCC-CCCeEEEEEEEEeecC--CCCCCCCCccchhhhcC-----------CCCC-------eEEEecCccc
Q psy581 98 VARAYTPVTSDE-HHGYMDLVVKVYFKNV--HPKFPDGGKMSQFLENM-----------KVGE-------PINVSGPRGR 156 (343)
Q Consensus 98 ~~R~yTi~s~~~-~~~~l~~~Vk~~~~~~--~~~~~~~G~~S~~L~~l-----------~~G~-------~V~v~GP~G~ 156 (343)
..|+|||+|++. +++.++|+|+++.+.. .....+.|.+|.||+++ ++|+ .|.|.+|.|.
T Consensus 290 ~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~ 369 (539)
T 2qtl_A 290 QPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTN 369 (539)
T ss_dssp CCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSCC
T ss_pred cceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCC
Confidence 579999999986 4689999999764321 11122458899999876 8999 9999999863
Q ss_pred eeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh---CC--CCCccEEEEEecCCc-hhhhhHHH
Q psy581 157 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DP--TDNTKMSLIFANQSE-KDILLREE 230 (343)
Q Consensus 157 ~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~---~~--~~~~~v~li~~~r~~-~~~~~~~e 230 (343)
.|.++. + ...+++|||+||||||++++++++.. .+ ....+++|||++|+. .|++|.+|
T Consensus 370 -------~F~Lp~-~--------~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dE 433 (539)
T 2qtl_A 370 -------SFHLPD-D--------PSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKE 433 (539)
T ss_dssp -------CCCCCS-S--------TTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHH
T ss_pred -------CccCCc-c--------CCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHH
Confidence 677765 1 25789999999999999999998532 11 124789999999999 79999999
Q ss_pred HHHHHHhCCCcEEEEEEecCCCC--CCcccccccCHHHHHhhcCC-----CCCCcEEEEeCC
Q psy581 231 LEEAAAKNPDQFKLWYTVDRPED--GWKYSTGFVSAEMIAEHLFP-----PSPDNLVLMCGP 285 (343)
Q Consensus 231 l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~l~~~~~~-----~~~~~~i~vCGp 285 (343)
|+++.+.++. ++++++++++.. .|.+..|+++. .+.+.... ...+..+|+|||
T Consensus 434 L~~~~~~g~~-~~l~~afSRd~~~~~~~g~k~yVqd-~l~e~~~~l~~~l~~~~a~vYVCGp 493 (539)
T 2qtl_A 434 LRHFLKHGIL-THLKVSFSRDAPVGEEEAPAKYVQD-NIQLHGQQVARILLQENGHIYVCGD 493 (539)
T ss_dssp HHHHHHTTSS-CEEEEEESSSCC------CCCSHHH-HHHHTHHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHhCCC-cEEEEEEccCCCccccCCCccchhH-HHHHhHHHHHHhhccCCcEEEEECC
Confidence 9999987763 788888888654 24445677764 23322110 013578999999
No 32
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.86 E-value=1.8e-22 Score=207.83 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=125.0
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCC---CCCCCCccchhhhcCCC------------CCeEEEecCccce----
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHP---KFPDGGKMSQFLENMKV------------GEPINVSGPRGRL---- 157 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~---~~~~~G~~S~~L~~l~~------------G~~V~v~GP~G~~---- 157 (343)
..|+|||+|++.. ++.++|+|++..+.... +....|.+|+||+++++ |++|.|.||+|.+
T Consensus 428 ~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~ 507 (682)
T 2bpo_A 428 TPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYK 507 (682)
T ss_dssp CCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTTE
T ss_pred ccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccccccceeeccCcCcccCce
Confidence 5799999999875 58899988654333221 33457999999987776 9999999999975
Q ss_pred --eecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCC---------CCCccEEEEEecCCchhhh
Q psy581 158 --AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP---------TDNTKMSLIFANQSEKDIL 226 (343)
Q Consensus 158 --~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~---------~~~~~v~li~~~r~~~~~~ 226 (343)
.+...+.|.++. ....+++|||+||||||++++++++.... ....+++|+|++|+.+|++
T Consensus 508 v~v~vr~~~F~Lp~---------~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~l 578 (682)
T 2bpo_A 508 LPVHVRRSNFRLPS---------NPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFL 578 (682)
T ss_dssp ECEEEECCSCCCCS---------STTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEEEESSSSSCT
T ss_pred EEEEEecCcccCCC---------CCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEEecCChhhhh
Confidence 122223455543 12578999999999999999999986421 1246899999999999999
Q ss_pred hHHHHHHHHHhCCCcEEEEEEecCCCCCCcccccccCH------HHHHhhcCCCCCCcEEEEeCC
Q psy581 227 LREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA------EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 227 ~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~l~~~~~~~~~~~~i~vCGp 285 (343)
|.+||+++..+.+..+++++++++++.. ..++++. +.+.+.+. .+..+|||||
T Consensus 579 y~dEl~~~~~~~g~~~~l~~afSr~d~~---~k~yVqd~l~e~~~~l~~~l~---~~~~vYvCGp 637 (682)
T 2bpo_A 579 YQDEWPEYAKKLDGSFEMVVAHSRLPNT---KKVYVQDKLKDYEDQVFEMIN---NGAFIYVCGD 637 (682)
T ss_dssp TTTTHHHHHHHHGGGEEEEEEESCCTTS---CCCCHHHHHHHTHHHHHHHHT---TTCEEEEEEC
T ss_pred hHHHHHHHHHhcCCceEEEEEECCCCCC---CCcchHHHHHhhHHHHHHHHh---CCcEEEEeCC
Confidence 9999999965443358999999884221 2344443 22333342 4679999999
No 33
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.86 E-value=9.3e-22 Score=200.37 Aligned_cols=167 Identities=17% Similarity=0.272 Sum_probs=123.4
Q ss_pred eeeeceeccCCCC-CCeEEEEEEEEeecCCCCCCCCCccchhhhcCCC-CC-----eEEEecCccceeecCCCceeeccC
Q psy581 98 VARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GE-----PINVSGPRGRLAYLGNGEFHIRAV 170 (343)
Q Consensus 98 ~~R~yTi~s~~~~-~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~-G~-----~V~v~GP~G~~~~~~~~~f~l~~~ 170 (343)
..|+|||+|++.. ++.++|+|++..+....+..+.|.+|+||+++.+ |+ +|.|.+|.| .|.++.
T Consensus 393 ~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g--------~F~lp~- 463 (618)
T 3qe2_A 393 QARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLPF- 463 (618)
T ss_dssp CCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECC--------SCCCCS-
T ss_pred ccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecC--------cccCCC-
Confidence 6799999999865 5789998876444332333456999999998887 88 999999999 677765
Q ss_pred CCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHh---CCCCCccEEEEEecCCc-hhhhhHHHHHHHHHhCCCcEEEEE
Q psy581 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DPTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQFKLWY 246 (343)
Q Consensus 171 ~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~---~~~~~~~v~li~~~r~~-~~~~~~~el~~l~~~~~~~~~~~~ 246 (343)
+ ...+++|||+||||||++++++++.. .+....+++|+|++|+. .|++|.+||+++.+... .+++++
T Consensus 464 ~--------~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~g~-l~~l~~ 534 (618)
T 3qe2_A 464 K--------ATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRDGA-LTQLNV 534 (618)
T ss_dssp S--------TTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHHTS-SSEEEE
T ss_pred C--------CCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhcCC-CcEEEE
Confidence 1 25789999999999999999999753 22234689999999999 59999999999988753 248888
Q ss_pred EecCCCCCCcccccccCH--HHHHhhcCCCCCCcEEEEeCC
Q psy581 247 TVDRPEDGWKYSTGFVSA--EMIAEHLFPPSPDNLVLMCGP 285 (343)
Q Consensus 247 ~~~~~~~~~~~~~g~~~~--~~l~~~~~~~~~~~~i~vCGp 285 (343)
+++++.....|.+.++.+ +.+.+.+ ..+..+|+|||
T Consensus 535 a~Srd~~~k~yVqd~l~~~~~~l~~~l---~~~a~vYvCGp 572 (618)
T 3qe2_A 535 AFSREQSHKVYVQHLLKQDREHLWKLI---EGGAHIYVCGD 572 (618)
T ss_dssp EETTSSSSCCCHHHHHHHTHHHHHHHH---HHTCEEEEEEE
T ss_pred EEcCCCCCCCcHHHHHHHhHHHHHHHH---hCCcEEEEECC
Confidence 888876544444444332 2222333 24679999999
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.82 E-value=1.3e-21 Score=166.10 Aligned_cols=133 Identities=23% Similarity=0.277 Sum_probs=93.1
Q ss_pred CCCCCe-EEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecC
Q psy581 142 MKVGEP-INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 220 (343)
Q Consensus 142 l~~G~~-V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r 220 (343)
+++||+ +.|+||+|+ .|.++ ..++++|||||+||||++++++++.+.+ .+++++ ++|
T Consensus 1 L~~Gd~vl~v~gP~G~-------~f~~~-----------~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r 58 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGT-------PVPME-----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVT 58 (158)
T ss_dssp -----------CCCCC-------CBCCC-----------CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EEC
T ss_pred CcCCCEeeEEECCCCC-------CCccC-----------CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeC
Confidence 578999 599999995 23322 2578999999999999999999987654 489999 999
Q ss_pred CchhhhhHHHHHHHHHhCCCcEEEEEEecCC----CCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccccCC
Q psy581 221 SEKDILLREELEEAAAKNPDQFKLWYTVDRP----EDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKP 296 (343)
Q Consensus 221 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~ 296 (343)
+.++++|.++|+++.. ++.++.+.+++ +++|.+..|++++ .+.+.+... ....+|+|||
T Consensus 59 ~~~d~~~~~el~~l~~----~~~~~~v~~~~~~~~~~~~~g~~G~v~~-~l~~~l~~~-~~~~vy~CGP----------- 121 (158)
T 3lrx_A 59 FEPMVILKEELEKAVT----RHIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLESE-DWDLVFMVGP----------- 121 (158)
T ss_dssp BGGGCCSHHHHHHHSS----EEEECCBCCCTTSCHHHHHHHHHHHHHH-HHHHHHHHS-CCSEEEEESC-----------
T ss_pred CHHHhhHHHHHHHHHh----ceEEEEeeccccccCCCCCCCCcccccH-HHHHhhccC-CCCEEEEECC-----------
Confidence 9999999999998753 35444333332 2235556788876 455444322 4568999999
Q ss_pred CCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 297 EDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
++|++ ++.+.|+++|++
T Consensus 122 ----------------------~~mm~-~v~~~l~~~Gv~ 138 (158)
T 3lrx_A 122 ----------------------VGDQK-QVFEVVKEYGVP 138 (158)
T ss_dssp ----------------------HHHHH-HHHHHHGGGTCC
T ss_pred ----------------------HHHHH-HHHHHHHHcCCC
Confidence 99999 888999999998
No 35
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=157.14 Aligned_cols=138 Identities=13% Similarity=0.167 Sum_probs=102.2
Q ss_pred EEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhC------CCCCccEEEEEecCC
Q psy581 148 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD------PTDNTKMSLIFANQS 221 (343)
Q Consensus 148 V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~------~~~~~~v~li~~~r~ 221 (343)
|.|+||+| .|.++. ...+++|||||||||||++++++++... .....+++|+|++|+
T Consensus 1 v~v~GP~G--------~~~~~~---------~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~ 63 (186)
T 3a1f_A 1 IAVDGPFG--------TASEDV---------FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRD 63 (186)
T ss_dssp CCTTSTTS--------HHHHHH---------TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESC
T ss_pred CeEECCCC--------CCccCh---------hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECC
Confidence 45789999 554432 1368999999999999999999998753 113578999999999
Q ss_pred chhhh-hHHHHHHHHHhC-----CCcEEEEEEecCCCCC---------------Cc-----ccccccCHHHH-HhhcCC-
Q psy581 222 EKDIL-LREELEEAAAKN-----PDQFKLWYTVDRPEDG---------------WK-----YSTGFVSAEMI-AEHLFP- 273 (343)
Q Consensus 222 ~~~~~-~~~el~~l~~~~-----~~~~~~~~~~~~~~~~---------------~~-----~~~g~~~~~~l-~~~~~~- 273 (343)
.+++. |.++|.++...+ +++++++++++++... +. ...||++.+.+ .+....
T Consensus 64 ~~~~~w~~~~l~~l~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~ 143 (186)
T 3a1f_A 64 THAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQH 143 (186)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhC
Confidence 99998 999999998764 5569999888865221 11 12378876543 332211
Q ss_pred CCCCcEEEEeCCCccccccccCCCCcccceeeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 274 PSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 274 ~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
...+..+|+||| ++|++ .++.+|.++|++
T Consensus 144 ~~~~~~v~~CGP---------------------------------~~m~~-~v~~~l~~~g~~ 172 (186)
T 3a1f_A 144 PNTRIGVFLCGP---------------------------------EALAE-TLSKQSISNSES 172 (186)
T ss_dssp TTCEEEEEEESC---------------------------------HHHHH-HHHHHHHHTCCC
T ss_pred CCCcEEEEEeCC---------------------------------HHHHH-HHHHHHHHhhcc
Confidence 124688999999 99999 888999999985
No 36
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.78 E-value=2.6e-20 Score=155.21 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=94.3
Q ss_pred EEEecCccceeecCCCceeeccCCCCCCCCCCCcceEEEEEcCcchHhHHHHHHHHHhCCCCCccEEEEEecCCchhhhh
Q psy581 148 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILL 227 (343)
Q Consensus 148 V~v~GP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vv~iA~GtGIap~~sll~~~~~~~~~~~~v~li~~~r~~~~~~~ 227 (343)
+.|+||+|+ .|.. + ..++++|||||+||||++++++++.+.+ .+++++ ++|+.+++++
T Consensus 3 ~~v~GP~G~-------~~~~-~----------~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~ 60 (142)
T 3lyu_A 3 LNVAGPLGT-------PVPM-E----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVIL 60 (142)
T ss_dssp ----CCCSC-------CBCC-C----------CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCS
T ss_pred eeeeCCCCC-------CccC-C----------CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhH
Confidence 578999995 2322 2 2578999999999999999999998764 579999 9999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEecCC----CCCCcccccccCHHHHHhhcCCCCCCcEEEEeCCCccccccccCCCCcccce
Q psy581 228 REELEEAAAKNPDQFKLWYTVDRP----EDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDKKEMK 303 (343)
Q Consensus 228 ~~el~~l~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~l~~~~~~~~~~~~i~vCGp~~~~~~~~l~~~~~~~~~ 303 (343)
.+||+++.. ++.++.+.+++ +++|.+..|++++ .+.+.+.. .....+|+|||
T Consensus 61 ~~el~~l~~----~~~~~~~~~~~~~~~~d~~~g~~G~v~~-~l~~~~~~-~~~~~vy~CGP------------------ 116 (142)
T 3lyu_A 61 KEELEKAVT----RHIVEPVPLNPNQDFLANMKNVSQRLKE-KVRELLES-EDWDLVFMVGP------------------ 116 (142)
T ss_dssp HHHHHTTSS----EEEEEEECCCTTSCHHHHHHHHHHHHHH-HHHHHHHS-SCCSEEEEESC------------------
T ss_pred HHHHHHHHh----heEEEEeecccccCCCCCCCCCccchhH-HHHHhccc-CCCCEEEEECC------------------
Confidence 999988653 35555444432 2335556788875 45555443 24568999999
Q ss_pred eeeeccccccccCCCCcchhhhhhhhHhhCCCC
Q psy581 304 TLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336 (343)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~ 336 (343)
++|++ ++.+.+++.|++
T Consensus 117 ---------------~~Mm~-av~~~l~~~~~~ 133 (142)
T 3lyu_A 117 ---------------VGDQK-QVFEVVKEYGVP 133 (142)
T ss_dssp ---------------HHHHH-HHHHHHHHHTCC
T ss_pred ---------------HHHHH-HHHHHHHHcCCc
Confidence 99999 888999999986
No 37
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=65.51 E-value=6.3 Score=36.39 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=27.4
Q ss_pred ceEEEEEcCcc--hHhHHHHHHHHHhCCCCCccEEEEEecC
Q psy581 182 TQLSMIAGGTG--ITPMLQLVRHITKDPTDNTKMSLIFANQ 220 (343)
Q Consensus 182 ~~vv~iA~GtG--Iap~~sll~~~~~~~~~~~~v~li~~~r 220 (343)
+++++.||||| |.|++++++++.+.+ .+|.++-+.+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g---~~V~~vg~~~ 40 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARG---YAVHWLGTPR 40 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTT---CEEEEEECSS
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCC---CEEEEEECCc
Confidence 57999999996 889999999998765 4665554333
No 38
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=50.15 E-value=21 Score=34.35 Aligned_cols=62 Identities=8% Similarity=0.171 Sum_probs=44.7
Q ss_pred cccCCCceEeEEEEEEEEeCC----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceecc
Q psy581 43 TLVDPDVKVPLKLKEKIEINH----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVT 106 (343)
Q Consensus 43 ~~~~p~~~~~~~v~~~~~i~~----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s 106 (343)
...+....+.++|++.+.++. +++.|+|..+... +.|+||+++-|...++...+.+-.....
T Consensus 55 ~~~~~~~p~~a~v~~n~~Lt~~~~r~~~hie~dl~~s~--l~Y~~GD~l~V~p~N~~~~V~~~l~~l~ 120 (458)
T 3qfs_A 55 PPFDAKNPFLAAVTTNRKLNQGTERHLMHLELDISDSK--IRYESGDHVAVYPANDSALVNQLGKILG 120 (458)
T ss_dssp SCCCSSSCEEEEEEEEEECCSSSSSCEEEEEEECTTSC--CCCCTTCEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEEEEEEEcCCCCCCCEEEEEEEeCCCC--cccCCCCEEEEEeeCCHHHHHHHHHHhC
Confidence 345556678899999999975 4899999986542 7899999999998765443333333333
No 39
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=42.12 E-value=42 Score=31.42 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=35.5
Q ss_pred ceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCC
Q psy581 49 VKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATIND 95 (343)
Q Consensus 49 ~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g 95 (343)
..+.++|++.+.+++ +++.|+|+.+.. ..|+||+++.|...++.
T Consensus 5 ~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~---~~Y~~GD~l~v~p~N~~ 53 (393)
T 4dql_A 5 GAFSTNVVASKELQQPGSARSTRHLEIELPKE---ASYQEGDHLGVIPRNYE 53 (393)
T ss_dssp CCEEEEEEEEEECSCTTCSCCEEEEEEECCTT---CCCCTTCEEEECCCCCH
T ss_pred CcEEEEEEeEEEcCCCCCCceEEEEEEECCCC---CccCCCCEEEEEccCCH
Confidence 346789999999975 589999998753 78999999999876543
No 40
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=39.85 E-value=23 Score=28.67 Aligned_cols=62 Identities=18% Similarity=0.345 Sum_probs=44.3
Q ss_pred CCCCCCEEEEEEeeCCeeeeeeceeccCCC---CCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 80 GLPIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 80 ~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~---~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
....|..|.+.....+ ..+.|+++.... ..+ . +.|- ...++.+.|-..++||.|.+..|.|.
T Consensus 82 ~V~~Gs~V~l~~~~~~--~~~~~~iVg~~ead~~~~-~-~~IS-----------~~SPlG~ALlGk~~GD~v~~~~p~G~ 146 (156)
T 2f23_A 82 VIGLGSVVELEDPLSG--ERLSVQVVSPAEANVLDT-P-MKIS-----------DASPMGKALLGHRVGDVLSLDTPKGK 146 (156)
T ss_dssp CCCTTCEEEEECTTTC--CEEEEEEECGGGCBTTSS-S-EEEE-----------TTSHHHHHHTTCCTTCEEEEEETTEE
T ss_pred EEEeCcEEEEEEcCCC--CEEEEEEEChhHcCcCCC-C-EEEC-----------CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 4568998888754344 457788876432 223 2 3333 57889999999999999999999994
No 41
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=37.27 E-value=66 Score=31.51 Aligned_cols=61 Identities=10% Similarity=0.232 Sum_probs=40.9
Q ss_pred cccCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceec
Q psy581 43 TLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPV 105 (343)
Q Consensus 43 ~~~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~ 105 (343)
...+....+.++|++.+.+++ +++.|+|..+... +.|+||+++.|...++...+.+-....
T Consensus 107 ~~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~--l~Y~~GD~l~V~P~N~~~~V~~~l~~l 172 (539)
T 2qtl_A 107 SVTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTD--FSYQPGDAFSVICPNSDSEVQSLLQRL 172 (539)
T ss_dssp ------CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC--CCCCTTCEEEEECCCCHHHHHHHHHHT
T ss_pred CCCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCC--cCcCCCCEEEEEeCCCHHHHHHHHHHh
Confidence 334555677899999999985 4889999987542 689999999999876544333333333
No 42
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.57 E-value=27 Score=21.99 Aligned_cols=8 Identities=50% Similarity=0.995 Sum_probs=3.7
Q ss_pred CCceehhh
Q psy581 2 VPSILVGV 9 (343)
Q Consensus 2 ~~~~~~~~ 9 (343)
+|.++.++
T Consensus 10 ~~~IA~gV 17 (44)
T 2ks1_B 10 IPSIATGM 17 (44)
T ss_dssp SSSSTHHH
T ss_pred cceEEeeh
Confidence 34555544
No 43
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=34.29 E-value=28 Score=28.26 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 80 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 80 ~~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
....|..|.+.. ..+ ..+.|+|+....... ..-.|- ...++.+.|-..++||.|.+..|.|.
T Consensus 84 ~V~~Gs~V~l~~-~~g--~~~~y~iVg~~ead~-~~~~IS-----------~~SPlg~ALlGk~vGD~v~v~~P~G~ 145 (158)
T 2p4v_A 84 KVFFGAWVEIEN-DDG--VTHRFRIVGYDEIFG-RKDYIS-----------IDSPMARALLKKEVGDLAVVNTPAGE 145 (158)
T ss_dssp SCSSSCEEEEEC-TTC--CCEEEEBCCSTTCCS-SSCCBC-----------TTSHHHHHSTTCCTTCEEEEECSSCE
T ss_pred EEeccEEEEEEE-CCC--CEEEEEEECHHHcCc-cCCeec-----------CCCHHHHHhcCCCCCCEEEEEcCCCc
Confidence 356899888865 444 467899976543211 111111 46788888988999999999999994
No 44
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=34.16 E-value=45 Score=26.42 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=42.7
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCcc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
...|..|.+.....+ ..+.|+++....... ..-.|- ...++.+.|-..++||.|.+..|.|
T Consensus 57 V~~Gs~V~l~d~~~g--~~~~~~iVg~~ead~-~~~~IS-----------~~SPlG~ALlGk~vGD~v~v~~P~G 117 (141)
T 2pn0_A 57 VTMNSTVRFRVESSA--EEFCLTLVYPKDVDT-SGEKIS-----------ILAPVGSALLGLAQGDEIEWPKPGG 117 (141)
T ss_dssp CCTTCEEEEEETTTC--CEEEEEEECGGGCCS-SSCEEE-----------TTSTTHHHHTTCBTTCEEEEECTTS
T ss_pred EEeCcEEEEEECCCC--CEEEEEEECHhHcCc-cCCEEc-----------CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 568898888654344 457888876443211 111222 4688999999999999999999999
No 45
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=30.16 E-value=36 Score=26.73 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCcc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G 155 (343)
...|..|.+.....+ ..+.|+++..... +...-.|- ...++.+.|-..++||.|.+..|.|
T Consensus 54 V~~Gs~V~l~~~~~g--~~~~~~iVg~~ea-d~~~~~IS-----------~~SPlG~ALlGk~~GD~v~v~~p~G 114 (136)
T 3bmb_A 54 VTMNSRVKFRNLSDG--EVRVRTLVYPAKM-TDSNTQLS-----------VMAPVGAALLGLRVGDSIHWELPGG 114 (136)
T ss_dssp CCTTCEEEEEETTTC--CEEEEEEECGGGC-CCTTTEEE-----------TTSHHHHHHTTCBTTCEEEEEETTT
T ss_pred EEeCcEEEEEECCCC--CEEEEEEEChHHc-CccccEec-----------CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 568898888654334 3567888753321 11111222 4688889999999999999999999
No 46
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=29.27 E-value=74 Score=31.69 Aligned_cols=57 Identities=7% Similarity=0.169 Sum_probs=40.5
Q ss_pred CceEeEEEEEEEEeCC----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceecc
Q psy581 48 DVKVPLKLKEKIEINH----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVT 106 (343)
Q Consensus 48 ~~~~~~~v~~~~~i~~----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~s 106 (343)
...+.++|+..+.+++ +++.|+|.++... +.|+||+++.|...++...+.+-.....
T Consensus 220 ~~~~~a~v~~n~~Lt~~~~~~~~hie~~~~~~~--~~Y~~GD~l~V~p~N~~~~V~~~l~~l~ 280 (618)
T 3qe2_A 220 KNPFLAAVTTNRKLNQGTERHLMHLELDISDSK--IRYESGDHVAVYPANDSALVNQLGKILG 280 (618)
T ss_dssp SSCEEEEEEEEEECSCCSSSCEEEEEEECTTSC--CCCCTTCEEEECCCCCHHHHHHHHHHTT
T ss_pred CCcEEEEEEeEEEcCCCCCCcEEEEEEEcCCCC--cccccCCEEEEEcCCCHHHHHHHHHHhC
Confidence 3457899999999864 4889999986542 7899999999987655443333333333
No 47
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=24.47 E-value=98 Score=29.23 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred cCCCceEeEEEEEEEEeCC-----CEEEEEEECCCCCccCCCCCCCEEEEEEeeCCeeeeeeceec
Q psy581 45 VDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPV 105 (343)
Q Consensus 45 ~~p~~~~~~~v~~~~~i~~-----~~~~l~l~~~~~~~~~~~~pGq~v~l~~~~~g~~~~R~yTi~ 105 (343)
.+....+.++|++.+.+++ +++.|+|...... -..|+||+++.|...++...+.+-....
T Consensus 25 ~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~-~~~Y~~GD~l~V~p~N~~~~V~~~l~~l 89 (435)
T 1f20_A 25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQ-ELQYQPGDHLGVFPGNHEDLVNALIERL 89 (435)
T ss_dssp HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCG-GGCCCTTCEEEECCCCCHHHHHHHHTTB
T ss_pred cccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCC-CCcCCCCCEEEEEecCCHHHHHHHHHHh
Confidence 3445667899999999985 4888999875431 2779999999999876554444444443
No 48
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.86 E-value=44 Score=27.02 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=38.8
Q ss_pred CCCCCEEEEEEeeCCeeeeeeceeccCCCCCCeEEEEEEEEeecCCCCCCCCCccchhhhcCCCCCeEEEecCccc
Q psy581 81 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156 (343)
Q Consensus 81 ~~pGq~v~l~~~~~g~~~~R~yTi~s~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~~l~~G~~V~v~GP~G~ 156 (343)
...|..|.+.....+ ..+.|+++..... +...-.|- ...++.+.|-..++||.|.+..|.|.
T Consensus 86 V~~Gs~V~l~~~~~~--~~~~y~iVg~~ea-d~~~~~IS-----------~~SPlG~ALlGk~~GD~v~v~~p~G~ 147 (158)
T 1grj_A 86 VIFGATVTVLNLDSD--EEQTYRIVGDDEA-DFKQNLIS-----------VNSPIARGLIGKEEDDVVVIKTPGGE 147 (158)
T ss_dssp CCTTCEEEEEETTTT--EEEEEEEECTTTC-BGGGTEEE-----------SSSHHHHHHTTCBTTCEECC------
T ss_pred EEeCcEEEEEECCCC--CEEEEEEECHHHh-CCcCCEEc-----------CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 568998888654344 4678999865432 21111222 46889999999999999999999994
No 49
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=20.68 E-value=37 Score=21.38 Aligned_cols=6 Identities=0% Similarity=-0.219 Sum_probs=2.6
Q ss_pred hhhhcc
Q psy581 23 QESKSK 28 (343)
Q Consensus 23 ~~~~~~ 28 (343)
+++|.|
T Consensus 30 ~~~~~R 35 (44)
T 2l2t_A 30 FAVYVR 35 (44)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 344444
Done!