RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy581
(343 letters)
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 361 bits (929), Expect = e-126
Identities = 153/307 (49%), Positives = 194/307 (63%), Gaps = 34/307 (11%)
Query: 37 SKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE 96
TL PD+K PL+L ++ I+HDTR FRF LPS +H+LGLP+GQH+ LSA I+
Sbjct: 3 RSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGN 62
Query: 97 FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156
V R YTP++SD+ G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G
Sbjct: 63 LVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL 122
Query: 157 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLI 216
L Y G G+F IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+
Sbjct: 123 LVYQGKGKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLL 181
Query: 217 FANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSP 276
FANQ+EKDILLR ELEE K+ +FKLWYT+DR + W Y GFV+ EMI +HL PP
Sbjct: 182 FANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEE 241
Query: 277 DNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336
+ LVLMC GPPPMI +AC PNLD +G+
Sbjct: 242 EPLVLMC---------------------------------GPPPMIQYACLPNLDHVGHP 268
Query: 337 EKLRFSY 343
+ F +
Sbjct: 269 TERCFVF 275
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 333 bits (857), Expect = e-115
Identities = 115/302 (38%), Positives = 166/302 (54%), Gaps = 61/302 (20%)
Query: 42 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARA 101
+ ++P+ L+EK INH+TR FRF L E V+GLPIGQH+S+ AT++ + + R
Sbjct: 3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVGLPIGQHMSVKATVDGKEIYRP 62
Query: 102 YTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 161
YTPV+SD+ GY DL++KVY + G+MSQ+++++ G+ + V GP+G+ Y
Sbjct: 63 YTPVSSDDEKGYFDLIIKVY---------EKGQMSQYIDHLNPGDFLQVRGPKGQFDYKP 113
Query: 162 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQS 221
N V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN +
Sbjct: 114 N-----------------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVN 156
Query: 222 EKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVL 281
E DILLR EL++ A K FK++Y ++ P GW GFVSA+MI +H PPS D V+
Sbjct: 157 EDDILLRTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDIKVM 215
Query: 282 MCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRF 341
MC GPP M A + +L+ LGY+ + F
Sbjct: 216 MC---------------------------------GPPMMNK-AMQGHLETLGYTPEQWF 241
Query: 342 SY 343
+
Sbjct: 242 IF 243
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 330 bits (849), Expect = e-114
Identities = 127/304 (41%), Positives = 178/304 (58%), Gaps = 44/304 (14%)
Query: 42 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARA 101
L +P ++ +L K E++ D R FRF LPS + VLGLPIG+H+ + ATI + RA
Sbjct: 4 PALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRA 63
Query: 102 YTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 161
YTP + + G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G
Sbjct: 64 YTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTG 123
Query: 162 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 220
G F I + +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 124 RGSFVINGKQR-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176
Query: 221 SEKDILLREELEEAAAKNPDQFKLWYTVD---RPEDGWKYSTGFVSAEMIAEHLFPPSPD 277
+E DILLR+EL+ AA+ PD+ K+WY +D RPE+GWKYS GFV+ ++ EH+ D
Sbjct: 177 TEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD 236
Query: 278 NLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSE 337
L L C GPPPMI FA PNL+K+ Y
Sbjct: 237 TLALAC---------------------------------GPPPMIQFAISPNLEKMKYDM 263
Query: 338 KLRF 341
F
Sbjct: 264 ANSF 267
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 149 bits (378), Expect = 2e-43
Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 37/250 (14%)
Query: 42 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPI----GQHLSLSATINDEF 97
+ ++ ++ +T F + E + GQ + L TI
Sbjct: 2 RISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDE-CGNRGVKFEPGQFMDL--TIPGTD 58
Query: 98 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGR 156
V+R+Y+P G ++ +++V G+ S +L + +VG+ ++V GP G
Sbjct: 59 VSRSYSPANLPNPEGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSVKGPLG- 108
Query: 157 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLI 216
F ++ +AGGTG+ P++ +VR + + N + +
Sbjct: 109 -------VFGLKERGMAP---------RYFVAGGTGLAPVVSMVRQMQEWTAPN-ETRIY 151
Query: 217 FANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSP 276
F +E ++ +EL+ + + V P W+ G + + E L
Sbjct: 152 FGVNTEPELFYIDELKSLERSMRN-LTVKACVWHPSGDWEGEQGSPI-DALREDLESSDA 209
Query: 277 DNLVLMCGPP 286
+ + +CGPP
Sbjct: 210 NPDIYLCGPP 219
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 121 bits (306), Expect = 5e-33
Identities = 40/237 (16%), Positives = 87/237 (36%), Gaps = 37/237 (15%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
+ K+ I R GQ+L + DE R ++ ++ +
Sbjct: 3 LSCKVTSVEAITDTVYRVRIVPD--AAFSFRA-GQYLMVVM---DERDKRPFSMASTPDE 56
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRA 169
G+++L + + ++ + + + I V P G E +R
Sbjct: 57 KGFIELHIGAS---------EINLYAKAVMDRILKDHQIVVDIPHG--------EAWLRD 99
Query: 170 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLRE 229
++ + +IAGGTG + ++ + +++ + + E+ +
Sbjct: 100 DEERP---------MILIAGGTGFSYARSILLTALARNPNR-DITIYWGGREEQHLYDLC 149
Query: 230 ELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286
ELE + K+P ++ V++PE GW+ TG V ++ +H D + + G
Sbjct: 150 ELEALSLKHPG-LQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHD--IYIAGRF 203
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 122 bits (307), Expect = 5e-33
Identities = 50/243 (20%), Positives = 85/243 (34%), Gaps = 39/243 (16%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
V K+ + P GQ L I+ E V RAY+ V +
Sbjct: 5 VTGKVTKVQNWTDALFSLTVHAPVLPFT----AGQFTKLGLEIDGERVQRAYSYV-NSPD 59
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 170
+ + + Y V GK+S L +K G+ + V F +
Sbjct: 60 NPDL----EFYLVTV-----PDGKLSPRLAALKPGDEVQVVSEAAG--------FFVL-- 100
Query: 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI-TKDPTDNTKMSLIFANQSEKDILLRE 229
D + + L M+A GT I P L ++R D + L+ A + D+
Sbjct: 101 ---DEVPHCE--TLWMLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAARYAADLSYLP 153
Query: 230 ELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLF-----PPSPDN-LVLMC 283
++E + + ++ V R E TG + A + + L P + + V++C
Sbjct: 154 LMQELEKRYEGKLRIQTVVSR-ETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLC 212
Query: 284 GPP 286
G P
Sbjct: 213 GNP 215
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 121 bits (305), Expect = 6e-32
Identities = 53/242 (21%), Positives = 101/242 (41%), Gaps = 38/242 (15%)
Query: 47 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLG-LPIGQHLSLSATINDEFVARAYTPV 105
L ++ T F +L + + L GQ++++ T+ R+Y+
Sbjct: 105 KIHHFEGTLARVENLSDSTITFDIQLDDGQPDIHFLA-GQYVNV--TLPGTTETRSYS-F 160
Query: 106 TSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGE 164
+S + VV+ GKMS++L K G+ ++ +GP G
Sbjct: 161 SSQPGNRLTGFVVRNV---------PQGKMSEYLSVQAKAGDKMSFTGPFG--------S 203
Query: 165 FHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKD 224
F++R V + P + M+AGGTGI P L +++ + + +++ + L+F + D
Sbjct: 204 FYLRDVKR---P-------VLMLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFGVTQDCD 252
Query: 225 ILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCG 284
++ E+L+ K P F+ V + G+V+ + + L D V +CG
Sbjct: 253 LVALEQLDALQQKLP-WFEYRTVVAHA-ESQHERKGYVTGHIEYDWLNGGEVD--VYLCG 308
Query: 285 PP 286
P
Sbjct: 309 PV 310
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: FAD; 2.95A {Porphyromonas gingivalis}
Length = 290
Score = 113 bits (285), Expect = 1e-29
Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 57/275 (20%)
Query: 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSA------------------ 91
+ ++ ++ + F +LP E + G + +
Sbjct: 9 EWECEVLSNKNVSTFIKEFVVKLPEGETMNFKS-GSYAQIKIPKYNIRYADYDIQDRFRG 67
Query: 92 -----------TINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD------GGK 134
N+E RAY+ + L V++ G
Sbjct: 68 DWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGI 127
Query: 135 MSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGIT 194
S ++ ++K G+ + +SGP G D + I GG G+
Sbjct: 128 SSSYIFSLKPGDKVMMSGPYGDFHI-----------QDTDAE-------MLYIGGGAGMA 169
Query: 195 PMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPD-QFKLWYTVDRPED 253
P+ + H+ + K+S + +S+ +I E+ E + P+ +F + + +PED
Sbjct: 170 PLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFPNFKFHIALSDPQPED 229
Query: 254 GWKYSTGFVSAEMIAEHL--FPPSPDNLVLMCGPP 286
W GF+ + +L D MCGP
Sbjct: 230 NWTGYVGFIHQVIYDNYLKDHDAPEDIEYYMCGPG 264
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 114 bits (286), Expect = 7e-29
Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 41/254 (16%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLG-LPIGQHLSLSATINDE--FVARAYTPVTSD 108
++ K + F E V P GQ+L + R Y+
Sbjct: 154 DFRIVAKTPRSALITSFELEPVDGGAVAEYRP-GQYLGVWLKPEGFPHQEIRQYSLTRKP 212
Query: 109 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHI 167
+ GY + K +GG++S +L + VG+ + + P G +F +
Sbjct: 213 DGKGY----------RIAVKREEGGQVSNWLHNHANVGDVVKLVAPAG--------DFFM 254
Query: 168 RAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILL 227
+++I+ G G TPML ++ + K +++ A ++
Sbjct: 255 AVADDTP---------VTLISAGVGQTPMLAMLDTLAKAGHT-AQVNWFHAAENGDVHAF 304
Query: 228 REELEEAAAKNPD-QFKLWYTVDRPED---GWKYSTGFVSAEMIAEHLFPPSPDNLVLMC 283
+E++E P WY D G S G + + P +C
Sbjct: 305 ADEVKELGQSLPRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAF--SDPTMQFYLC 362
Query: 284 GPPR--KTVKNNLK 295
GP + L
Sbjct: 363 GPVGFMQFTAKQLV 376
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 108 bits (271), Expect = 7e-28
Identities = 47/250 (18%), Positives = 88/250 (35%), Gaps = 39/250 (15%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLG-LPIGQHLSLSATINDE--FVARAYTPVTSD 108
++EK + F VL P GQ++ + T R Y+ +
Sbjct: 5 TFVVREKQVESAYVTSFVLVPADGGAVLDYQP-GQYIGIEVTPEGSDYREIRQYSLSHAS 63
Query: 109 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHI 167
Y ++ K + G +S +L N+KVG+ + + P G +F
Sbjct: 64 NGREY-----RISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAG--------DFFY 110
Query: 168 RAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILL 227
+ + +I+ G G TPM ++ + K + ++ ++A S K+
Sbjct: 111 VERERP----------VVLISAGVGATPMQAILHTLAKQNK--SGVTYLYACNSAKEHTF 158
Query: 228 REELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR 287
+E + A+ ++WY + +D G + L P D +CGP
Sbjct: 159 AQETAQLIAQQGWMQQVWYRDESADDVL---QGEMQ----LAELILPIEDGDFYLCGPIG 211
Query: 288 --KTVKNNLK 295
+ V L
Sbjct: 212 FMQYVVKQLL 221
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 111 bits (278), Expect = 9e-28
Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 37/254 (14%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLG-LPIGQHLSLSATINDE--FVARAYTPVTSD 108
++EK + F E V+ P GQ+ S++ + R Y+
Sbjct: 156 TFVIREKRPESDVITSFILEPADGGPVVNFEP-GQYTSVAIDVPALGLQQIRQYSLSDMP 214
Query: 109 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHI 167
Y + VK G +S L +++ VG+ + ++ P G FHI
Sbjct: 215 NGRTY-RISVK----REGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYG--------SFHI 261
Query: 168 RAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILL 227
+K + +I+GG G+TPM+ +++ + P ++ + ++ +
Sbjct: 262 DVDAKTP---------IVLISGGVGLTPMVSMLKVALQAP--PRQVVFVHGARNSAVHAM 310
Query: 228 REELEEAAAKNPD-QFKLWYTVDRPED---GWKYSTGFVSAEMIAEHLFPPSPDNLVLMC 283
R+ L EAA + ++Y PED G V + I + + P D +C
Sbjct: 311 RDRLREAAKTYENLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDAD--YYIC 368
Query: 284 GPPR--KTVKNNLK 295
GP + + LK
Sbjct: 369 GPIPFMRMQHDALK 382
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 104 bits (262), Expect = 1e-26
Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 40/247 (16%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
++ N F+ GQ + + ++ + RAY+ + +
Sbjct: 4 YTERVLSVHHWNDTLFSFKTTRNPGLRFK---TGQFVMIGLEVDGRPLMRAYSIASPNYE 60
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 170
+KV G ++ L+++K G+ + VS +
Sbjct: 61 EHLEFFSIKV----------PDGPLTSRLQHLKEGDELMVSRK--------PTGTLVH-- 100
Query: 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREE 230
P L +++ GTG+ P L +++ + K+ L+ + ++ +
Sbjct: 101 -DDLLPGK----HLYLLSTGTGMAPFLSVIQDP-ETYERYEKVILVHGVRWVSELAYADF 154
Query: 231 LEEAAAKNP-------DQFKLWYTVDR-PEDGWKYSTGFVSAEMIAEHLFPPSPDNL--- 279
+ + ++ ++ + V R P T + + + E + P +
Sbjct: 155 ITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDR 214
Query: 280 VLMCGPP 286
++CG P
Sbjct: 215 AMICGSP 221
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 102 bits (255), Expect = 2e-25
Identities = 38/258 (14%), Positives = 85/258 (32%), Gaps = 42/258 (16%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
+ F A L G+ + ++ + + RAY+ V S +
Sbjct: 20 DTATVLSVHHWTDTLFSFTCTRDQA---LRFNNGEFTMVGLEVDGKPLTRAYSIV-SPNY 75
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 170
++ + + V G ++ L+++KVG+P+ + G +
Sbjct: 76 EEHL----EFFSIKV-----QNGPLTSRLQHLKVGDPVLIGKKPT-------GTLVADNL 119
Query: 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREE 230
M++ GTG+ P + ++R K+ L + + ++ +
Sbjct: 120 LPGKTLW--------MLSTGTGLAPFMSIIRDP-DIYERFDKVVLTHTCRLKGELAYMDY 170
Query: 231 LEEAAAKNP-------DQFKLWYTVDRPE-DGWKYSTGFVSAEMIAEHLFPPSPDNL--- 279
++ + ++ + TV R E + T +++ + L P
Sbjct: 171 IKHDLPGHEYLGDVIREKLVYYPTVTREEFENEGRITDLIASGKLFTDLDMPPFSPEQDR 230
Query: 280 VLMCGPPR--KTVKNNLK 295
V++CG K LK
Sbjct: 231 VMLCGSTAMLKDTTELLK 248
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 91.0 bits (226), Expect = 2e-21
Identities = 44/258 (17%), Positives = 87/258 (33%), Gaps = 51/258 (19%)
Query: 46 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPI--GQHLSLSAT-INDEFVARAY 102
+ + FR P L G+ + + N + + RAY
Sbjct: 12 AKVLPDAQTVTSVRHWTDTLFSFRVTRPQ-----TLRFRSGEFVMIGLLDDNGKPIMRAY 66
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 162
+ + S ++ G ++ L+++KVGE I +
Sbjct: 67 S-IASPAWDEELEFYSIKV---------PDGPLTSRLQHIKVGEQIILRPKPV------- 109
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G I A+ L +A GTGI P L+R + ++ ++ A ++
Sbjct: 110 GTLVIDALLPGKR--------LWFLATGTGIAPFASLMREP-EAYEKFDEVIMMHACRTV 160
Query: 223 KDILLREELEEAAAKNP-------DQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLF--- 272
++ +L EA ++P + K + T R E G ++ + + +F
Sbjct: 161 AELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHH---MGRITDNLASGKVFEDL 217
Query: 273 ---PPSPDN-LVLMCGPP 286
P +P+ ++CG
Sbjct: 218 GIAPMNPETDRAMVCGSL 235
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 81.2 bits (201), Expect = 7e-18
Identities = 47/249 (18%), Positives = 87/249 (34%), Gaps = 45/249 (18%)
Query: 54 KLKEKIEINHDTRCFRFELPS-AEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHG 112
+ + E+ ++ + E L P GQ L L+ + R + + D+
Sbjct: 9 TVVSQREVAYNIFEMVLKGTLVDEMDL--P-GQFLHLAVPNGAMLLRRPISISSWDKRAK 65
Query: 113 YMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 172
++ ++ + + L ++ G ++V GP LGNG F + V+
Sbjct: 66 TCTILYRIGDE---------TTGTYKLSKLESGAKVDVMGP------LGNG-FPVAEVTS 109
Query: 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELE 232
D +I GG G+ P+ +L + + K +M+++ SE +L E
Sbjct: 110 TDKIL--------IIGGGIGVPPLYELAKQLEK---TGCQMTILLGFASENVKILENEFS 158
Query: 233 EAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR--KTV 290
L D G K G V ++ E F + + CG P K V
Sbjct: 159 NLKNVT-----LKIATDDGSYGTK---GHVG-MLMNEIDFEV---DALYTCGAPAMLKAV 206
Query: 291 KNNLKPEDK 299
++
Sbjct: 207 AKKYDQLER 215
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 66.2 bits (162), Expect = 1e-13
Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 32/154 (20%)
Query: 148 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 207
+NV+GP LG + K + I TGI + + + +
Sbjct: 3 LNVAGP------LGTP-VPMEKFGK-----------ILAIGAYTGIVEVYPIAKAWQEIG 44
Query: 208 TDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA--- 264
D T E ++L+EELE+A + + P + + VS
Sbjct: 45 NDVT----TLHVTFEPMVILKEELEKAV----TRHIVEPVPLNPNQDFLANMKNVSQRLK 96
Query: 265 EMIAEHLFPPSPDNLVLMCGPPR--KTVKNNLKP 296
E + E L D LV M GP K V +K
Sbjct: 97 EKVRELLESEDWD-LVFMVGPVGDQKQVFEVVKE 129
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 68.0 bits (167), Expect = 5e-13
Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 44/237 (18%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 111
LK+ K +I D F P + G +L++ + + R Y+ +
Sbjct: 10 RLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTV--AVPNGSR-RTYSLCNDSQER 66
Query: 112 GYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 170
+ VK + +G S ++ G+ + VS PR + I
Sbjct: 67 NRYVIAVK--------RDSNGRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFI--- 115
Query: 171 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREE 230
++AGG GITPML + R + + + L + + + +E
Sbjct: 116 ---------------LVAGGIGITPMLSMARQLRAEGLRS--FRLYYLTRDPEGTAFFDE 158
Query: 231 LEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR 287
L + + K+ + P + P V CGP
Sbjct: 159 L--TSDEWRSDVKIHHDHGDPTKAFD----------FWSVFEKSKPAQHVYCCGPQA 203
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.60A {Pyrococcus
furiosus}
Length = 158
Score = 63.2 bits (154), Expect = 2e-12
Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 31/149 (20%)
Query: 142 MKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV 200
MK G+ + NV+GP LG + K + I TGI + +
Sbjct: 1 MKEGDSLLNVAGP------LGTP-VPMEKFGK-----------ILAIGAYTGIVEVYPIA 42
Query: 201 RHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTG 260
+ + D T E ++L+EELE+A + + P + +
Sbjct: 43 KAWQEIGNDVT----TLHVTFEPMVILKEELEKAV----TRHIVEPVPLNPNQDFLANMK 94
Query: 261 FVSA---EMIAEHLFPPSPDNLVLMCGPP 286
VS E + E L D LV M GP
Sbjct: 95 NVSQRLKEKVRELLESEDWD-LVFMVGPV 122
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 60.9 bits (148), Expect = 1e-10
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 37/163 (22%)
Query: 99 ARAY----TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKM-----SQFLENMKVGEPIN 149
R Y T D + L V+ + K P+ G+ S +L +++ G +
Sbjct: 77 LRLYSIASTRHGDDVDDKTISLCVRQ----LEYKHPESGETVYGVCSTYLTHIEPGSEVK 132
Query: 150 VSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPM--------LQLVR 201
++GP G+ E P + + + M+AGGTGITPM R
Sbjct: 133 ITGPVGK-------EML--------LPDDPEANVI-MLAGGTGITPMRTYLWRMFKDAER 176
Query: 202 HITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKL 244
+ L+F + +IL +EELEE K PD F+L
Sbjct: 177 AANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRL 219
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 59.0 bits (143), Expect = 4e-10
Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 27/139 (19%)
Query: 117 VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 176
+ K P + G S F++N+K+ + I ++G +G F+ P
Sbjct: 120 IHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGA--------HGYFN--------LP 163
Query: 177 TNLKVTQLS--MIAGGTGITPMLQLVRHITKDPTDNT---------KMSLIFANQSEKDI 225
+ + IA GTGI+P + ++ + +N +++ + +E I
Sbjct: 164 NDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSI 223
Query: 226 LLREELEEAAAKNPDQFKL 244
L ELE P+ +
Sbjct: 224 LYLNELEYFQKMYPNNINI 242
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 55.2 bits (133), Expect = 9e-09
Identities = 22/153 (14%), Positives = 56/153 (36%), Gaps = 23/153 (15%)
Query: 99 ARAY----TPVTSDEHHGYMDL-VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGP 153
R Y + ++ + + + + G S ++ ++K G+ + ++GP
Sbjct: 93 VRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGP 152
Query: 154 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT-- 211
G+ +F + P + +A GTGI P + + + +
Sbjct: 153 SGK-------KFLL--------PNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTG 197
Query: 212 KMSLIFANQSEKDILLREELEEAAAKNPDQFKL 244
++L++ ++++ + L+ FKL
Sbjct: 198 NITLVYGAPYSDELVMMDYLKG-LESKHKNFKL 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 1e-08
Identities = 48/242 (19%), Positives = 71/242 (29%), Gaps = 69/242 (28%)
Query: 63 HDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTS----DEHHGYMDLVV 118
+ TR S EHVL +P S + ++F P DE +LV
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 119 KVYF-----KNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL-----AYLGNGEFHIR 168
K F V P K+ QF + + + L YL + H
Sbjct: 63 K--FLGYVSSLVEP-----SKVGQFDQVLNLC-----------LTEFENCYLEGNDIHAL 104
Query: 169 AVS--KKDPPTNLKVTQL------SMIAGGTGITPMLQ--LVRHITKDPTDNTKMSLIFA 218
A +++ T +K +L + I L R + N ++ IF
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG---EGNAQLVAIFG 161
Query: 219 NQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSA--EMIAEHLFPPSP 276
Q D EEL + L+ T Y V + AE L
Sbjct: 162 GQGNTDDYF-EELRD----------LYQT---------YHV-LVGDLIKFSAETLSELIR 200
Query: 277 DN 278
Sbjct: 201 TT 202
Score = 48.5 bits (115), Expect = 2e-06
Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 82/194 (42%)
Query: 157 LAYLGNGEFHIRAVSKKD-PPTNL--KVTQLSMIAGGTGI-TPMLQLVRHITKDPTDNTK 212
+ L F I + P T+L + + S + G+ +PML + ++T
Sbjct: 300 ITVL----FFIGVRCYEAYPNTSLPPSILEDS-LENNEGVPSPML-SISNLT-------- 345
Query: 213 MSLIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLF 272
+E++++ K P V I+ L
Sbjct: 346 ---------------QEQVQDYVNKTNSHL--------PAGKQ------VE---IS--LV 371
Query: 273 PPSPDNLVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLD- 331
NLV+ GPP+ + L K K LD
Sbjct: 372 N-GAKNLVV-SGPPQ-------------SLYGLNLTLRKAK------------APSGLDQ 404
Query: 332 -KLGYSE-KLRFSY 343
++ +SE KL+FS
Sbjct: 405 SRIPFSERKLKFSN 418
Score = 44.7 bits (105), Expect = 4e-05
Identities = 38/266 (14%), Positives = 72/266 (27%), Gaps = 111/266 (41%)
Query: 10 GLIVVVGFIISAIQESKSKKKDKASRSSKKELKTL---------VDPDVKVPLK-LKEKI 59
G +++A+ +++ + S +K + L P+ +P L++ +
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 60 EINHDTRC-------------------FRFELPSAEHVLGLPIGQHLSLSATIN--DEFV 98
E N LP+ + V +SL +N V
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-------EISL---VNGAKNLV 378
Query: 99 ARAYTPVTSDEHHGY-MDLV-VKVYFKNVHPKFPDGG-----KMSQ--------FLENMK 143
V+ G L + + + K P G S+ FL
Sbjct: 379 ------VS-----GPPQSLYGLNLTLRKA--KAPSGLDQSRIPFSERKLKFSNRFL---- 421
Query: 144 VGEPINVSGPRGRLAYLGNGEFH----IRAVSK--KD--------PPTNLKVTQLSMIAG 189
P+ P FH + A KD ++++ G
Sbjct: 422 ---PVAS--P-----------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465
Query: 190 ------GTGITPMLQLVRHITKDPTD 209
I+ ++V I + P
Sbjct: 466 SDLRVLSGSISE--RIVDCIIRLPVK 489
Score = 32.3 bits (73), Expect = 0.31
Identities = 50/314 (15%), Positives = 79/314 (25%), Gaps = 132/314 (42%)
Query: 16 GFIISAIQESKSK--------KKDKASRSSKKELKTLVDPDVKVPLKLKEKI--EINHDT 65
GF I I + +K K R + + D K+ EKI EIN +
Sbjct: 1658 GFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT---EKIFKEINEHS 1714
Query: 66 RCFRFELPSAE-------------------HVL---GL-PIGQ----HLSL---SATIND 95
+ F L GL P H SL +A
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-SLGEYAA---- 1769
Query: 96 EFVARAYTPVTSDEHHGYMDL--VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGP 153
+ A M + +V+V F
Sbjct: 1770 -LASLA----------DVMSIESLVEVVFY------------------------------ 1788
Query: 154 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIA---GGTGITPMLQLVRHITKDPTDN 210
RG AV P L + MIA G + + ++++ +
Sbjct: 1789 RGMTMQ--------VAV----PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 211 TKMSLIFAN------Q-----SEKDI-LLREELEEAAAKNPDQFKLWYTVDRPEDGWKYS 258
T + N Q + + + L + D +L +
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL------QKS----- 1885
Query: 259 TGFVSAEMIAEHLF 272
+S E + HLF
Sbjct: 1886 ---LSLEEVEGHLF 1896
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 54.0 bits (130), Expect = 2e-08
Identities = 30/137 (21%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 116 LVVKVYFKNVHPKFPDG----GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 171
L V+ + G S FL N K G+ I ++GP G+ +
Sbjct: 106 LCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGK-------IMLL---- 154
Query: 172 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMS----LIFANQSEKDILL 227
P + MIA GTG+ P +R + + N + L + +L
Sbjct: 155 ---PEEDPN-ATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLY 210
Query: 228 REELEEAAAKNPDQFKL 244
EE + PD F+
Sbjct: 211 DEEFTSYLKQYPDNFRY 227
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 53.6 bits (129), Expect = 2e-08
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 136 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 195
S FL ++K G + ++GP G+ E P + T + M+ GTGI P
Sbjct: 133 SNFLCDLKPGAEVKLTGPVGK-------EML--------MPKDPNATII-MLGTGTGIAP 176
Query: 196 MLQLVRHITKDPTDNTKMS----LIFANQSEKDILLREELEEAAAKNPDQFKL 244
+ + + D+ K + L + +L +EE E+ K PD F+L
Sbjct: 177 FRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRL 229
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 50.3 bits (120), Expect = 4e-07
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 40/201 (19%)
Query: 62 NHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFV----ARAY----TPVTSDEHHGY 113
+ R +E L GQ + + D+ R Y T E +
Sbjct: 139 SGTVR--HVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKT 196
Query: 114 MDLVVKVYFKNVHPKFPDGGKM-----SQFLENMKVG-EPINVSGPRGRLAYLGNGEFHI 167
+ L V+ + + P+ G+ S +L N+ VG + + ++GP G+ E
Sbjct: 197 VSLCVRQ----LEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGK-------EML- 244
Query: 168 RAVSKKDPPTNLKVTQLSMIAGGTGITP----MLQLVRHITKDPTDNTKMSLIFANQSEK 223
P + T + M+A GTGI P + ++ + +D K LIF
Sbjct: 245 -------LPDDEDATVV-MLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTA 296
Query: 224 DILLREELEEAAAKNPDQFKL 244
+IL +++ E+ AA+NPD F+L
Sbjct: 297 NILYKDDFEKMAAENPDNFRL 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 6e-05
Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 85/281 (30%)
Query: 17 FIISAIQES-----------KSKKKDKASRSSKKELKTLVDP---------------DVK 50
+S I ES K DK + + L L +P
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAH 386
Query: 51 VPLKL--------KEKIEINHDTRCFRFEL---PSAEHVLGLPIGQHLSLSATINDEF-- 97
+P L + + + ++ L E + +P +L L + +E+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEYAL 445
Query: 98 ---VARAYTPVTSDEHHGYMDLVVKVYFKNV---HPKFPD-GGKMSQFLENMKVGEPINV 150
+ Y + + + + YF + H K + +M+ F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------------ 493
Query: 151 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVR----HITK- 205
R+ +L + F + +K ++ + A G I LQ ++ +I
Sbjct: 494 -----RMVFL-DFRF----LEQK-----IRHDSTAWNASG-SILNTLQQLKFYKPYICDN 537
Query: 206 DPTDNTKMSLI--FANQSEKDILLREELE--EAAAKNPDQF 242
DP ++ I F + E++++ + + A D+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 39.5 bits (91), Expect = 0.002
Identities = 44/300 (14%), Positives = 84/300 (28%), Gaps = 98/300 (32%)
Query: 117 VVKVYFKNVH-PKFPDGGKMSQFLENMKVGEPINVSGP-------RGRLAYLGNGEFHIR 168
+V+ + + V + FL + E S R RL Y N F
Sbjct: 78 MVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKY 129
Query: 169 AVSKKDPPTNLK--VTQLS---------MIAGGTGITPMLQLVRHITKDPTDNTKMS--- 214
VS+ P L+ + +L + G+G T + + KM
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGV--LGSGKT---WVALDVCLSYKVQCKMDFKI 184
Query: 215 --LIFANQSEKDILLREELEEAAAKNPDQFKLWYTVD-----RPEDGWKYSTGFVSAEMI 267
L N + + +L E L+ KL Y +D R + S +
Sbjct: 185 FWLNLKNCNSPETVL-EMLQ----------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 268 AEHLF--PPSPDNLVLM---------------C------------------GPPRKTVKN 292
L P + L+++ C ++ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 293 NLKPEDKKEMKTLFSEFNKMKIHEGPP------P----MINFACKPNLDKLGYSEKLRFS 342
+ E+K+L ++ + + P P +I + + L + +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Score = 38.7 bits (89), Expect = 0.002
Identities = 43/351 (12%), Positives = 101/351 (28%), Gaps = 95/351 (27%)
Query: 16 GFIISAIQ-ESKSKKKDKASRSSKKELKTLVDPDVKVPL---KLKEKIEINHDTRCFRFE 71
F++S I+ E + +++ + D V +L+ +++
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLR--------- 141
Query: 72 LPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD------LVVKVY-FKN 124
+ +L L +++ + G + + + V
Sbjct: 142 ----QALLELRPAKNVLI---------------------DG-VLGSGKTWVALDVCLSYK 175
Query: 125 VHPKFPDGG---KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKV 181
V K + V E + +L Y + + R+ + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQ------KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 182 TQ--LSMIAGGTGITPMLQLVRHITKDP---------------TDNTKMSLIFANQSEKD 224
Q L + L ++ ++ ++ T +++ + +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 225 ILLREE---LEEAAAKNPDQFKLWYTV---DRPEDGWKYSTGFVSAEMIAEHL--FPPSP 276
I L L K + D P + + +S +IAE + +
Sbjct: 289 ISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLS--IIAESIRDGLATW 344
Query: 277 DN-LVLMCGPPRKTVK---NNLKPEDKKEMKTLFSEFNK-MKIHEGPPPMI 322
DN + C ++ N L+P + ++M S F I P ++
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTIL 391
Score = 32.1 bits (72), Expect = 0.30
Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 62/134 (46%)
Query: 200 VRHITKDPTDNTKMSLIFANQSEKDILLREE-------LEEAAAKN-------------- 238
+ HI + +F LL ++ +EE N
Sbjct: 51 IDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 239 P----DQF-----KLW--------YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSP-DNLV 280
P + +L+ Y V R + K + + L P N++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK----------LRQALLELRPAKNVL 154
Query: 281 L--M--CGPPRKTV 290
+ + G KT
Sbjct: 155 IDGVLGSG---KTW 165
>2gpj_A Siderophore-interacting protein; structural genomics, joint for
structural genomics, JCSG; HET: FAD; 2.20A {Shewanella
putrefaciens}
Length = 252
Score = 42.7 bits (100), Expect = 7e-05
Identities = 18/152 (11%), Positives = 35/152 (23%), Gaps = 29/152 (19%)
Query: 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEF-VARAYTPVTSDEHH 111
L++ I ++ L E + R YT +
Sbjct: 11 LEVIRSTYITPHMLRITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRDDE 70
Query: 112 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 171
+D V G S + + +VGE I + GP +
Sbjct: 71 IDVDFV----------LHDTDGPASSWAKTAQVGELIQIGGPGLKKL------------- 107
Query: 172 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 203
+ T + + + +
Sbjct: 108 ---INFE--ADWFLLAGDMTALPAISVNLAKL 134
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450
reductase, diflavin reductase, FAD, FMN-binding,
electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces
cerevisiae} PDB: 2bn4_A* 2bf4_A*
Length = 682
Score = 37.5 bits (87), Expect = 0.006
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 19/134 (14%)
Query: 121 YFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA-YLGNGEFHIRAVSKKDPPTNL 179
+N+ + L +L ++ F P+N
Sbjct: 472 LLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFR--------LPSNP 523
Query: 180 KVTQLSMIAGGTGITPM---------LQLVRHITKDPTDNTKMSLIFANQSEKDILLREE 230
T + MI GTG+ P + + K L + +++ D L ++E
Sbjct: 524 S-TPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDE 582
Query: 231 LEEAAAKNPDQFKL 244
E A K F++
Sbjct: 583 WPEYAKKLDGSFEM 596
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.008
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 24 ESKSKKKDKASRSSKKELKTLVDPDVKVP-LKLKEKIE 60
E ++ KK +AS LK L D P L +K +E
Sbjct: 18 EKQALKKLQAS------LK-LYADD-SAPALAIKATME 47
Score = 29.1 bits (64), Expect = 1.2
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 8/30 (26%)
Query: 298 DKKEMKTLFSEFNKMKIHEGP---PPM-IN 323
+K+ +K L + +K++ P + I
Sbjct: 18 EKQALKKL--Q-ASLKLYA-DDSAPALAIK 43
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 35.9 bits (82), Expect = 0.008
Identities = 17/162 (10%), Positives = 44/162 (27%), Gaps = 36/162 (22%)
Query: 186 MIAGGTGITPMLQLVRHI------TKDPTDNTKMSLIFANQSEKDI-LLREELEEAAAKN 238
++ G G+TP +++ + K+ + + + L+ ++
Sbjct: 22 LVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM 81
Query: 239 PDQFKLWY-------------TVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNL------ 279
++ + + ++ P+ DN
Sbjct: 82 QERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIAS 141
Query: 280 --------VLMCGPPR--KTVKNNLKPEDKKEMKTLFSEFNK 311
V +CGP +T+ + + + FNK
Sbjct: 142 QHPNTRIGVFLCGPEALAETLSKQSISNSESGPRGVHFIFNK 183
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD
and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4;
2.15A {Bacillus megaterium} PDB: 4dqk_A*
Length = 393
Score = 34.1 bits (79), Expect = 0.061
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 21/126 (16%)
Query: 117 VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 176
V V + G S +L ++ G+ I EF P
Sbjct: 191 VSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCF-ISTP-----QSEFT--------LP 236
Query: 177 TNLKVTQLSMIAGGTGITPM---LQLVRHITKDPTDN-TKMSLIFANQ-SEKDILLREEL 231
+ + T L M+ GTG+ P +Q R K+ + + L F + +D L +EEL
Sbjct: 237 KDPE-TPLIMVGPGTGVAPFRGFVQ-ARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEEL 294
Query: 232 EEAAAK 237
E A ++
Sbjct: 295 ENAQSE 300
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+,
oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus
norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Length = 688
Score = 33.3 bits (76), Expect = 0.14
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 23/108 (21%)
Query: 136 SQFLENMKVGEPINVSGPRGRLAYL-GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGIT 194
S +L ++ + + ++ G FH P N + ++ GTGI
Sbjct: 471 SSWLNRIQADDVVPC--------FVRGAPSFH--------LPRNPQ-VPCILVGPGTGIA 513
Query: 195 PM---LQLVRHITKDPTDNT-KMSLIFANQ-SEKDILLREELEEAAAK 237
P Q + + N M L+F + S+ D + REE +A K
Sbjct: 514 PFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK 561
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG,
structural genomics, PSI-2, protein initiative; 1.90A
{Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Length = 115
Score = 30.5 bits (69), Expect = 0.24
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 21/74 (28%)
Query: 133 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGE----FHIRAVSKKDPPTNLKVTQLSMIA 188
G ++ L + +G + V G LA H+ Q IA
Sbjct: 55 GDLALLLADTPLGTEMQVQ---GFLAPARKDSVKVKLHL--------------QQARRIA 97
Query: 189 GGTGITPMLQLVRH 202
G G P++ L H
Sbjct: 98 GSMGRDPLVGLEHH 111
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler
syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET:
FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A*
1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A*
3fjo_A* 1b1c_A*
Length = 618
Score = 31.9 bits (73), Expect = 0.29
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 186 MIAGGTGITPM---LQLVRHITKDPTDNTKMSLIFANQ-SEKDILLREELEEAAAK 237
M+ GTG+ P +Q + + + + L + + S++D L REEL +
Sbjct: 471 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD 526
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain,
FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus
norvegicus} SCOP: b.43.4.1 c.25.1.4
Length = 435
Score = 31.5 bits (72), Expect = 0.36
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 136 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 195
S +L ++ + + RG FH P N + ++ GTGI P
Sbjct: 250 SSWLNRIQADDVVPCF-VRG------APSFH--------LPRNPQ-VPCILVGPGTGIAP 293
Query: 196 M---LQLVRHITKDPTDNT-KMSLIFANQ-SEKDILLREELEEAAAK 237
Q + + N M L+F + S+ D + REE +A K
Sbjct: 294 FRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK 340
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD,
oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB:
3qft_A*
Length = 458
Score = 30.4 bits (69), Expect = 0.81
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 186 MIAGGTGITPM---LQLVRHITKDPTDNTKMSLIFANQ-SEKDILLREELEEAAAK 237
M+ GTG+ P +Q + + + + L + + S++D L REEL +
Sbjct: 311 MVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD 366
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.3
Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 220 QSEKDILLREELEEAAAKNPDQFKLWYTVDRPE--DGWKYSTGFVSAEMIAE 269
S+ +E E A K+ ++ W + E + K + +
Sbjct: 104 ASKVM---EQEWREKAKKDLEE---WNQ-RQSEQVEKNKINNRIADKAFYQQ 148
Score = 28.2 bits (62), Expect = 2.9
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 23 QESKSKKKDKASRSSKKELKTLVDPDV-KVPLKLKEKIEINH-DTR 66
Q + ++ D AS+ ++E + D+ + + E++E N + R
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 29.4 bits (66), Expect = 1.6
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 142 MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 174
K P++ S GR+ L +G I + + D
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETD 175
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET:
ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 29.4 bits (66), Expect = 2.2
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 19 ISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRC 67
+ A + +K K SKK + L P + +L+ +E ++ + C
Sbjct: 13 LKAREGGGGNRKGK----SKKWRQMLQFPHISQCEELRLSLERDYHSLC 57
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 28.5 bits (64), Expect = 3.1
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 10/111 (9%)
Query: 136 SQFLENMKVGEPINVSGPRGRLAYLGNGEF---HIRAVSKKDPPTNLKVTQLSMIAGGTG 192
+ +L + + R + P + + M+ GTG
Sbjct: 331 TGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPS-IPIIMVGPGTG 389
Query: 193 ITPM---LQLVRHITKDPTDNT--KMSLIFANQ-SEKDILLREELEEAAAK 237
I P LQ + + D M L F + ++D L R+EL
Sbjct: 390 IAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKH 440
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 28.3 bits (63), Expect = 3.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 142 MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 174
+ P+ ++ + R NG +I V D
Sbjct: 45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASD 77
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 27.7 bits (61), Expect = 5.1
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 227 LREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGP 285
L +LE ++ + + P G+ Y G +A + P + ++ GP
Sbjct: 20 LNAQLEGWLSQVQSTKRPARAIIAPHAGYTYC-GSCAAHAYK-QVDPSITRRIFIL-GP 75
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 27.4 bits (61), Expect = 8.9
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 23 QESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFR 69
+ S ASR +K L L P + L+E +++ + C
Sbjct: 19 RGSFDASSGPASRD-RKYLARLKLPPLSKCEALRESLDLGFEGMCLE 64
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Length = 117
Score = 26.1 bits (57), Expect = 8.9
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 13/57 (22%)
Query: 284 GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLR 340
G K V N+ +++T E + I AC+ + G + +
Sbjct: 48 GASVKLVAND------TQVQTEILEMLQSGITI-------EACQDCCENFGVASIIT 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,351,922
Number of extensions: 324055
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 64
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)